{ "baseline_file": "benchmarks/mfass/results/baseline-kmer-position.predictions.tsv", "candidate_file": "benchmarks/mfass/results/spliceai-1.3.1.predictions.tsv", "capacity": 100, "seed": 20260914, "denominators": { "baseline_scored": 8324, "candidate_scored": 8194, "common": 8194, "baseline_only": 130, "candidate_only": 0 }, "on_common_subset": { "baseline": { "n": 8194, "positives": 308, "prevalence": 0.03758847937515255, "capacity": 100, "precision_at_capacity": 0.62, "recall_at_capacity": 0.2012987012987013, "average_precision_sklearn": 0.2898037399638589, "auroc": 0.7686260132208649 }, "candidate": { "n": 8194, "positives": 308, "prevalence": 0.03758847937515255, "capacity": 100, "precision_at_capacity": 0.64, "recall_at_capacity": 0.2077922077922078, "average_precision_sklearn": 0.2986855472760137, "auroc": 0.8055241740253153 } }, "independent_groups": 454, "paired": { "precision_at_capacity": { "metric": "precision_at_capacity", "observed_delta": 0.020000000000000018, "resample_mean_delta": 0.01067758794207996, "bootstrap_bias": -0.009322412057920058, "mean_delta": 0.01067758794207996, "realised_capacity": { "requested": 100, "mean": 100.064, "min": 80, "max": 132, "list_fraction": 0.0122 }, "ci95_low": -0.09002272727272735, "ci95_high": 0.10526315789473684, "draws": 2000, "single_class_skipped": 0, "independent_groups": 454 }, "average_precision_sklearn": { "metric": "average_precision_sklearn", "observed_delta": 0.008881807312154821, "resample_mean_delta": 0.008226023680229663, "bootstrap_bias": -0.0006557836319251581, "mean_delta": 0.008226023680229663, "realised_capacity": { "requested": 100, "mean": 100.064, "min": 80, "max": 132, "list_fraction": 0.0122 }, "ci95_low": -0.04041644340047911, "ci95_high": 0.05602398700542567, "draws": 2000, "single_class_skipped": 0, "independent_groups": 454 }, "auroc": { "metric": "auroc", "observed_delta": 0.03689816080445041, "resample_mean_delta": 0.03693402182878345, "bootstrap_bias": 3.586102433304067e-05, "mean_delta": 0.03693402182878345, "realised_capacity": { "requested": 100, "mean": 100.064, "min": 80, "max": 132, "list_fraction": 0.0122 }, "ci95_low": 0.0022783026372199867, "ci95_high": 0.07499135881603218, "draws": 2000, "single_class_skipped": 0, "independent_groups": 454 } } }