{ "completion": "complete", "coverage": { "denominator": 184, "scored": 184, "unscored": 0 }, "coverage_context": { "not_selected": 0, "selected": 184, "unscored_file_scope": "selected inputs only; not_selected counted separately" }, "created_at": "2026-09-20T20:46:19.203286+00:00", "dataset_id": "flip2-rhomax-by-wild-type", "environment": { "architecture": "arm64", "container_digest": "unreported", "container_runtime": "unreported", "platform": "macOS-26.6.2-arm64-arm-64bit", "python": "3.11.13", "rewirebench": "0.4.0", "sdk_code_sha256": "fcc5ab65e6753cf29aabbdae231cbb5cdf72a3dd40ba8f109802c33223b33536", "sif_sha256": "unreported" }, "execution": { "adapter": "TrainMean", "batch_size": 32, "fitting": "train_only", "inference_and_fit_seconds": 0.0009417090041097254, "mode": "local_adapter", "prediction_type": "scalar" }, "independently_reproduced": false, "input_information": "Complete source sequence only; no assay labels during prediction", "kind": "rewire_local_evaluation", "metrics": { "n": 184, "ndcg": 0.9206667522227658, "spearman": null }, "model": { "name": "Training mean (Rewire control)", "training_overlap": "No pretraining; fitted only on this protocol training split. Split is not a claim of homology separation." }, "model_configuration": { "constant": "arithmetic mean of training targets", "fit_split": "train", "validation_used": false }, "packages": { "numpy": "1.26.4", "pandas": "2.3.3", "pyarrow": "23.0.1", "rewirebench": "0.4.0", "scikit-learn": "1.8.0", "scipy": "1.15.3" }, "predictions_sha256": "599dca4e6fa643a7cdfc96ac339033f61e5846ce225af17ac2ac3917ecc14fac", "prepared_sha256": "f417d43497e0c8c453bd7c66cfea05959b4d6d47462283096e42a2dae8b72419", "protocol_configuration": { "adapter_input_contract": "opaque-sequence-inputs-v1", "canonical_split_counts": { "test": 184, "train": 584, "validation": 116 }, "canonical_test_count": 184, "data_verification": "pinned_source_bytes", "dataset": "rhomax", "embedding_probe": { "alpha": 10.0, "feature_scaling": "none", "fit_intercept": true, "max_iter": 1000000, "name": "rewire-frozen-embedding-ridge-v1", "refit": "train only", "relationship_to_published_baseline": "Frozen-embedding extension of upstream alpha-10 ridge. The published baseline uses one-hot features and scales targets using train plus validation rows. This extension is not that published baseline.", "solver": "auto", "target_scaling": "StandardScaler fitted only on train labels", "tol": 1e-05, "validation_use": "none; fixed hyperparameters" }, "input_representation": "amino-acid sequence", "metric": "spearman", "metric_direction": "higher", "metrics": [ "spearman", "ndcg" ], "prepared_rows_sha256": "d86fe3926529df72649f4638ffa0d89ec62460d831ceb62ad47ff86249469a12", "smoke_limit_per_split": null, "source_note": null, "source_reuse_terms": "CC-BY-4.0 archive; source attribution under resources/flip2", "split": "by_wild_type", "split_counts": { "test": 184, "train": 584, "validation": 116 }, "suite_complete": false, "target_units": "nm", "task": "regression" }, "protocol_id": "flip2-fitness-v1", "protocol_results": { "complete": true, "coverage": { "denominator": 184, "scored": 184, "selected": 184, "unscored": 0 }, "metrics": { "n": 184, "ndcg": 0.9206667522227658, "spearman": null }, "metrics_scope": "Scored test rows of this archived split only; no suite aggregate", "protocol_id": "flip2-fitness-v1", "protocol_notes": [], "scope": "full", "score_direction": "higher", "suite_complete": false, "unavailable_metrics": { "spearman": "Undefined correlation for constant targets or predictions" }, "unscored_reasons": { "missing_prediction": 0, "not_selected": 0 } }, "protocol_version": "1", "provenance": { "data_verification": "pinned_source_bytes", "dataset_version": "zenodo-18433203-v3", "evaluator_url": "https://github.com/J-SNACKKB/FLIP/blob/62cace8735f5610e2743cf06ce0f944b37fffaa6/baselines/aggregate.py#L131-L135", "source_csv_sha256": "8e78f6a16cd5298131dca83130d4b94cc0ab4ae9c699460880441c19a65f656f", "source_sha256": "7c6d2f02cb89310378ac9897c321fbbd909fb0757ac88803dcce84f5f6b05ce3", "source_url": "https://zenodo.org/api/records/18433203/files/rhomax/by_wild_type.csv.gz/content", "split_origin": "Archived assignments: validation=True held out of training", "upstream_revision": "62cace8735f5610e2743cf06ce0f944b37fffaa6" }, "publication_note": "Sanitized local execution report. Raw inputs, source membership, predictions and machine paths remain local. No published-score reproduction claim.", "release_wheel_sha256": "f5956f616c20f58299eef4d654b1297b0ce21e0033014cc5cb2c1a406f4b494a", "review_status": "unreviewed_local_run", "schema_version": "1.0", "scope": "full", "timing_seconds": { "evaluation": 0.016455832999781705 } }