{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Introduction\n",
    "\n",
    "QA plots for the INTT detector"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:07.615228Z",
     "iopub.status.busy": "2025-03-24T23:02:07.614647Z",
     "iopub.status.idle": "2025-03-24T23:02:07.622212Z",
     "shell.execute_reply": "2025-03-24T23:02:07.620989Z"
    }
   },
   "outputs": [],
   "source": [
    "# imports to write dynamic markdown contents\n",
    "import os\n",
    "from IPython.display import display, Markdown, Latex\n",
    "from IPython.display import HTML"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:07.626620Z",
     "iopub.status.busy": "2025-03-24T23:02:07.626144Z",
     "iopub.status.idle": "2025-03-24T23:02:07.642784Z",
     "shell.execute_reply": "2025-03-24T23:02:07.641720Z"
    }
   },
   "outputs": [
    {
     "data": {
      "text/markdown": [
       "*For the result HTML page:* "
      ],
      "text/plain": [
       "<IPython.core.display.Markdown object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "text/html": [
       "<script>\n",
       "code_show=true; \n",
       "function code_toggle() {\n",
       " if (code_show){\n",
       " $('div.input').hide();\n",
       " $('div.jp-CodeMirrorEditor').hide(); // for newer versions of nbviewer.org\n",
       " } else {\n",
       " $('div.input').show();\n",
       " $('div.jp-CodeMirrorEditor').show(); // for newer versions of nbviewer.org\n",
       " }\n",
       " code_show = !code_show\n",
       "} \n",
       "$( document ).ready(code_toggle);\n",
       "</script>\n",
       "<form action=\"javascript:code_toggle()\"><input type=\"submit\" value=\"Click here to toggle on/off the raw code.\"></form>"
      ],
      "text/plain": [
       "<IPython.core.display.HTML object>"
      ]
     },
     "execution_count": 2,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# turn off/on code for the result HTML page\n",
    "\n",
    "display(Markdown('*For the result HTML page:* '))\n",
    "    \n",
    "HTML('''<script>\n",
    "code_show=true; \n",
    "function code_toggle() {\n",
    " if (code_show){\n",
    " $('div.input').hide();\n",
    " $('div.jp-CodeMirrorEditor').hide(); // for newer versions of nbviewer.org\n",
    " } else {\n",
    " $('div.input').show();\n",
    " $('div.jp-CodeMirrorEditor').show(); // for newer versions of nbviewer.org\n",
    " }\n",
    " code_show = !code_show\n",
    "} \n",
    "$( document ).ready(code_toggle);\n",
    "</script>\n",
    "<form action=\"javascript:code_toggle()\"><input type=\"submit\" value=\"Click here to toggle on/off the raw code.\"></form>''')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:07.713768Z",
     "iopub.status.busy": "2025-03-24T23:02:07.713155Z",
     "iopub.status.idle": "2025-03-24T23:02:07.723910Z",
     "shell.execute_reply": "2025-03-24T23:02:07.722598Z"
    }
   },
   "outputs": [
    {
     "data": {
      "text/markdown": [
       "[//]: # (This section starts with a 2nd level heading and get embedded in the result QA report at https://github.com/sPHENIX-Collaboration/QA-gallery/tree/QA-tracking-low-occupancy)\n",
       "\n",
       "## Tracking QA at low occupancy\n",
       "\n",
       "Low occupancy tracking QA concists full tracker + reconstruction of events with 20 $\\pi^+$,  20 $\\pi^-$ and one $\\Upsilon(1S) \\rightarrow e^+ e^-$. Please note the calorimeters are disabled to improve execution speed, which also removed some of the correlated albedo background for the tracker. \n",
       "\n",
       "The source code of the macro can be found at https://github.com/sPHENIX-Collaboration/macros/tree/QA-tracking-low-occupancy or [comparing it to the master branch](https://github.com/sPHENIX-Collaboration/macros/compare/QA-tracking-low-occupancy?expand=1).\n"
      ],
      "text/plain": [
       "<IPython.core.display.Markdown object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "import os.path\n",
    "\n",
    "# readme file of the macros, available if run under JenkinsCI\n",
    "# https://github.com/sPHENIX-Collaboration/utilities/blob/master/jenkins/built-test/test-tracking-qa.sh \n",
    "\n",
    "macro_markdown = 'Fun4All-macros-README.md'\n",
    "\n",
    "if os.path.isfile(macro_markdown) :\n",
    "    with open(macro_markdown, 'r') as file:\n",
    "        display(Markdown(file.read()))"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## `pyROOT` env check"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:07.727530Z",
     "iopub.status.busy": "2025-03-24T23:02:07.727062Z",
     "iopub.status.idle": "2025-03-24T23:02:16.806107Z",
     "shell.execute_reply": "2025-03-24T23:02:16.804210Z"
    }
   },
   "outputs": [
    {
     "data": {
      "text/markdown": [
       "via sPHENIX software distribution at `/var/lib/jenkins/workspace/sPHENIX/Build-Master-gcc14/build/new/install.1`"
      ],
      "text/plain": [
       "<IPython.core.display.Markdown object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "import ROOT\n",
    "\n",
    "OFFLINE_MAIN = os.getenv(\"OFFLINE_MAIN\")\n",
    "if OFFLINE_MAIN is not None:\n",
    "    display(Markdown(f\"via sPHENIX software distribution at `{OFFLINE_MAIN}`\"))"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Plotting source code"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:16.811614Z",
     "iopub.status.busy": "2025-03-24T23:02:16.811232Z",
     "iopub.status.idle": "2025-03-24T23:02:16.949689Z",
     "shell.execute_reply": "2025-03-24T23:02:16.948333Z"
    }
   },
   "outputs": [
    {
     "data": {
      "text/markdown": [
       "View the source code repository at https://github.com/sPHENIX-Collaboration/QA-gallery.git"
      ],
      "text/plain": [
       "<IPython.core.display.Markdown object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "import subprocess\n",
    "\n",
    "try:\n",
    "    git_url = \\\n",
    "        subprocess.run(['git','remote','get-url','origin'], stdout=subprocess.PIPE)\\\n",
    "        .stdout.decode('utf-8').strip()\\\n",
    "        .replace('git@github.com:','https://github.com/')\n",
    "\n",
    "    display(Markdown(f\"View the source code repository at {git_url}\"))\n",
    "except: # catch *all* exceptions\n",
    "    #     well do nothing\n",
    "    pass"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## JenkinsCI information (if available)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:16.954531Z",
     "iopub.status.busy": "2025-03-24T23:02:16.954071Z",
     "iopub.status.idle": "2025-03-24T23:02:17.085051Z",
     "shell.execute_reply": "2025-03-24T23:02:17.083644Z"
    }
   },
   "outputs": [
    {
     "data": {
      "text/markdown": [
       "Some further details about the QA run, if executed under the Jenkins CI:"
      ],
      "text/plain": [
       "<IPython.core.display.Markdown object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "text/markdown": [
       "* The commit being checked is sPHENIX-Collaboration/coresoftware/a31efaeddc6c0746d9d331f2948fb8ec821d73ac"
      ],
      "text/plain": [
       "<IPython.core.display.Markdown object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "text/markdown": [
       "* Link to the pull request: https://github.com/sPHENIX-Collaboration/coresoftware/pull/3493"
      ],
      "text/plain": [
       "<IPython.core.display.Markdown object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "text/markdown": [
       "* Link to the build: https://web.sdcc.bnl.gov/jenkins-sphenix/job/sPHENIX/job/test-tracking-low-occupancy-qa/7015/"
      ],
      "text/plain": [
       "<IPython.core.display.Markdown object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "text/markdown": [
       "* Git repo for macros: https://github.com/sPHENIX-Collaboration/macros.git , which merges `master` and the QA tracking branch"
      ],
      "text/plain": [
       "<IPython.core.display.Markdown object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "text/markdown": [
       "* Download the QA ROOT files: https://web.sdcc.bnl.gov/jenkins-sphenix/job/sPHENIX/job/test-tracking-low-occupancy-qa/7015/display/redirect?page=artifacts"
      ],
      "text/plain": [
       "<IPython.core.display.Markdown object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "text/markdown": [
       "Automatically generated by [sPHENIX Jenkins continuous integration](https://web.sdcc.bnl.gov/jenkins-sphenix/) [![sPHENIX](https://raw.githubusercontent.com/sPHENIX-Collaboration/utilities/master/jenkins/material/sphenix-logo-white-bg-72p.png)](https://www.sphenix.bnl.gov/web/) &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; [![jenkins.io](https://raw.githubusercontent.com/sPHENIX-Collaboration/utilities/master/jenkins/material/jenkins_logo_title-72p.png)](https://jenkins.io/)"
      ],
      "text/plain": [
       "<IPython.core.display.Markdown object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "display(Markdown('Some further details about the QA run, if executed under the Jenkins CI:'))\n",
    "\n",
    "checkrun_repo_commit = os.getenv(\"checkrun_repo_commit\")\n",
    "if checkrun_repo_commit is not None:\n",
    "    display(Markdown(f\"* The commit being checked is {checkrun_repo_commit}\"))\n",
    "        \n",
    "ghprbPullLink = os.getenv(\"ghprbPullLink\")\n",
    "if ghprbPullLink is not None:\n",
    "    display(Markdown(f\"* Link to the pull request: {ghprbPullLink}\"))\n",
    "\n",
    "BUILD_URL =  os.getenv(\"BUILD_URL\")\n",
    "if BUILD_URL is not None:\n",
    "    display(Markdown(f\"* Link to the build: {BUILD_URL}\"))\n",
    "\n",
    "git_url_macros =  os.getenv(\"git_url_macros\")\n",
    "sha_macros =  os.getenv(\"sha_macros\")\n",
    "if git_url_macros is not None:\n",
    "    display(Markdown(f\"* Git repo for macros: {git_url_macros} , which merges `{sha_macros}` and the QA tracking branch\"))\n",
    "\n",
    "RUN_ARTIFACTS_DISPLAY_URL = os.getenv(\"RUN_ARTIFACTS_DISPLAY_URL\")\n",
    "if RUN_ARTIFACTS_DISPLAY_URL is not None:\n",
    "    display(Markdown(f\"* Download the QA ROOT files: {RUN_ARTIFACTS_DISPLAY_URL}\"))\n",
    "\n",
    "JENKINS_URL  = os.getenv(\"JENKINS_URL\")\n",
    "if JENKINS_URL is not None:\n",
    "    display(Markdown(f\"Automatically generated by [sPHENIX Jenkins continuous integration]({JENKINS_URL}) [![sPHENIX](https://raw.githubusercontent.com/sPHENIX-Collaboration/utilities/master/jenkins/material/sphenix-logo-white-bg-72p.png)](https://www.sphenix.bnl.gov/web/) &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; &nbsp; [![jenkins.io](https://raw.githubusercontent.com/sPHENIX-Collaboration/utilities/master/jenkins/material/jenkins_logo_title-72p.png)](https://jenkins.io/)\"))"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "\n",
    "# Initialization"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:17.089623Z",
     "iopub.status.busy": "2025-03-24T23:02:17.089101Z",
     "iopub.status.idle": "2025-03-24T23:02:17.928998Z",
     "shell.execute_reply": "2025-03-24T23:02:17.927710Z"
    },
    "scrolled": true
   },
   "outputs": [],
   "source": [
    "%%cpp -d\n",
    "\n",
    "#include \"QA_Draw_Utility.C\"\n",
    "\n",
    "#include <sPhenixStyle.C>\n",
    "\n",
    "#include <TFile.h>\n",
    "#include <TLine.h>\n",
    "#include <TString.h>\n",
    "#include <TTree.h>\n",
    "#include <cassert>\n",
    "#include <cmath>"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:17.933216Z",
     "iopub.status.busy": "2025-03-24T23:02:17.932773Z",
     "iopub.status.idle": "2025-03-24T23:02:18.690728Z",
     "shell.execute_reply": "2025-03-24T23:02:18.689411Z"
    }
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "sPhenixStyle: Applying nominal settings.\n",
      "sPhenixStyle: ROOT6 mode\n"
     ]
    }
   ],
   "source": [
    "%%cpp\n",
    "\n",
    "SetsPhenixStyle();\n",
    "TVirtualFitter::SetDefaultFitter(\"Minuit2\");\n",
    "\n",
    "// test sPHENIX lib load\n",
    "// gSystem->Load(\"libg4eval.so\");\n",
    "\n",
    "// test libs\n",
    "// gSystem->ListLibraries();"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:18.695363Z",
     "iopub.status.busy": "2025-03-24T23:02:18.694814Z",
     "iopub.status.idle": "2025-03-24T23:02:18.853648Z",
     "shell.execute_reply": "2025-03-24T23:02:18.852247Z"
    }
   },
   "outputs": [],
   "source": [
    "%jsroot on"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Inputs and file checks"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:18.858509Z",
     "iopub.status.busy": "2025-03-24T23:02:18.858051Z",
     "iopub.status.idle": "2025-03-24T23:02:18.969155Z",
     "shell.execute_reply": "2025-03-24T23:02:18.967778Z"
    }
   },
   "outputs": [],
   "source": [
    "\n",
    "qa_file_name_new = os.getenv(\"qa_file_name_new\")\n",
    "if qa_file_name_new is None:\n",
    "    qa_file_name_new = \"G4sPHENIX_test-tracking-low-occupancy-qa_Event100_Sum10_qa.root\"\n",
    "    display(Markdown(f\"`qa_file_name_new` env not set. use the default `qa_file_name_new={qa_file_name_new}`\"))\n",
    "\n",
    "qa_file_name_ref = os.getenv(\"qa_file_name_ref\")\n",
    "if qa_file_name_ref is None:\n",
    "    qa_file_name_ref = \"reference/G4sPHENIX_test-tracking-low-occupancy-qa_Event100_Sum10_qa.root\"\n",
    "    display(Markdown(f\"`qa_file_name_ref` env not set. use the default `qa_file_name_ref={qa_file_name_ref}`\"))\n",
    "elif qa_file_name_ref == 'None':\n",
    "    qa_file_name_ref = None\n",
    "    display(Markdown(f\"`qa_file_name_ref` = None and we are set to not to use the reference histograms\"))\n",
    "    \n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:18.973904Z",
     "iopub.status.busy": "2025-03-24T23:02:18.973329Z",
     "iopub.status.idle": "2025-03-24T23:02:19.165626Z",
     "shell.execute_reply": "2025-03-24T23:02:19.164294Z"
    }
   },
   "outputs": [
    {
     "data": {
      "text/markdown": [
       "Openning QA file at `G4sPHENIX_test-tracking_Event400_Sum28_qa.root`"
      ],
      "text/plain": [
       "<IPython.core.display.Markdown object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "text/markdown": [
       "Openning QA reference file at `reference/G4sPHENIX_test-tracking_Event400_Sum28_qa.root`"
      ],
      "text/plain": [
       "<IPython.core.display.Markdown object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "# qa_file_new = ROOT.TFile.Open(qa_file_name_new);\n",
    "\n",
    "# assert qa_file_new.IsOpen()\n",
    "# qa_file_new.ls()\n",
    "display(Markdown(f\"Openning QA file at `{qa_file_name_new}`\"))\n",
    "ROOT.gInterpreter.ProcessLine(f\"TFile *qa_file_new = new TFile(\\\"{qa_file_name_new}\\\");\")\n",
    "ROOT.gInterpreter.ProcessLine(f\"const char * qa_file_name_new = \\\"{qa_file_name_new}\\\";\")\n",
    "\n",
    "if qa_file_name_ref is not None:\n",
    "#     qa_file_ref = ROOT.TFile.Open(qa_file_name_ref);\n",
    "\n",
    "#     assert qa_file_ref.IsOpen()\n",
    "    display(Markdown(f\"Openning QA reference file at `{qa_file_name_ref}`\"))\n",
    "    ROOT.gInterpreter.ProcessLine(f\"TFile *qa_file_ref = new TFile(\\\"{qa_file_name_ref}\\\");\")\n",
    "    ROOT.gInterpreter.ProcessLine(f\"const char *  qa_file_name_ref = \\\"{qa_file_name_ref}\\\";\")\n",
    "else:\n",
    "    ROOT.gInterpreter.ProcessLine(f\"TFile *qa_file_ref = nullptr;\")\n",
    "    ROOT.gInterpreter.ProcessLine(f\"const char *  qa_file_name_ref = nullptr;\")\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:19.170211Z",
     "iopub.status.busy": "2025-03-24T23:02:19.169654Z",
     "iopub.status.idle": "2025-03-24T23:02:19.295733Z",
     "shell.execute_reply": "2025-03-24T23:02:19.294397Z"
    },
    "scrolled": true
   },
   "outputs": [],
   "source": [
    "%%cpp\n",
    "\n",
    "if (qa_file_new == nullptr) \n",
    "{\n",
    "    cout <<\"Error, can not open QA root file\"<<qa_file_name_new<<endl;\n",
    "    exit(1);\n",
    "}\n",
    "\n",
    "// list inputs histograms if needed\n",
    "// qa_file_new ->ls();\n",
    "\n",
    "//TFile *qa_file_ref = NULL;\n",
    "//if (qa_file_name_ref)\n",
    "//{\n",
    "//    qa_file_ref = new TFile(qa_file_name_ref);\n",
    "//  \n",
    "//    if (qa_file_ref == nullptr) \n",
    "//    {\n",
    "//        cout <<\"Error, can not open QA root file\"<<qa_file_name_ref<<endl;\n",
    "//        exit(1);\n",
    "//    }\n",
    "//}"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Utilities (invisible to HTML output)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:19.300459Z",
     "iopub.status.busy": "2025-03-24T23:02:19.300008Z",
     "iopub.status.idle": "2025-03-24T23:02:19.421621Z",
     "shell.execute_reply": "2025-03-24T23:02:19.420264Z"
    }
   },
   "outputs": [],
   "source": [
    "%%cpp\n",
    "//constants\n",
    "\n",
    "const char *hist_name_prefix = \"QAG4SimulationIntt\";\n",
    "\n",
    "// assume INTT layers are 3 to 6\n",
    "static constexpr int first_layer_intt = 3;\n",
    "static constexpr int nlayers_intt = 4;"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:19.426161Z",
     "iopub.status.busy": "2025-03-24T23:02:19.425704Z",
     "iopub.status.idle": "2025-03-24T23:02:19.566764Z",
     "shell.execute_reply": "2025-03-24T23:02:19.565473Z"
    }
   },
   "outputs": [],
   "source": [
    "%%cpp -d\n",
    "// utility functions for batch plotting\n",
    "\n",
    "TCanvas* Draw( TFile* qa_file_new, TFile* qa_file_ref, const TString& hist_name_prefix, const TString& tag )\n",
    "{\n",
    "\n",
    "    const TString prefix = TString(\"h_\") + hist_name_prefix + TString(\"_\");\n",
    "\n",
    "    auto cv = new TCanvas(\n",
    "      TString(\"QA_Draw_Intt_\") + tag + TString(\"_\") + hist_name_prefix,\n",
    "      TString(\"QA_Draw_Intt_\") + tag + TString(\"_\") + hist_name_prefix,\n",
    "      950, 600);\n",
    "\n",
    "    DivideCanvas( cv, nlayers_intt );\n",
    "    for( int ilayer = 0; ilayer < nlayers_intt; ++ilayer )\n",
    "    {\n",
    "\n",
    "      const int layer = ilayer + first_layer_intt;\n",
    "\n",
    "      // get histograms\n",
    "      auto hnew = static_cast<TH1*>( qa_file_new->GetObjectChecked( Form( \"%s%s_%i\", prefix.Data(), tag.Data(), layer ), \"TH1\" ) );\n",
    "      hnew->Scale( 1./hnew->GetEntries() );\n",
    "      hnew->SetMinimum(0);\n",
    "\n",
    "      // reference\n",
    "      auto href = qa_file_ref ? static_cast<TH1*>( qa_file_ref->GetObjectChecked( Form( \"%s%s_%i\", prefix.Data(), tag.Data(), layer ), \"TH1\" ) ) : nullptr;\n",
    "      if( href )\n",
    "      {\n",
    "        href->Scale( 1./href->GetEntries() );\n",
    "        href->SetMinimum(0);\n",
    "      }\n",
    "\n",
    "      // draw\n",
    "      cv->cd( ilayer+1 );\n",
    "      DrawReference(hnew, href);\n",
    "\n",
    "      auto line = VerticalLine( gPad, 0 );\n",
    "      line->Draw();\n",
    "    }\n",
    "\n",
    "    return cv;\n",
    "\n",
    "}\n"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Azimuthal arc-length, $r \\Delta\\phi$, residuals, errors and pulls"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Residuals"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 15,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:19.571622Z",
     "iopub.status.busy": "2025-03-24T23:02:19.571179Z",
     "iopub.status.idle": "2025-03-24T23:02:19.959766Z",
     "shell.execute_reply": "2025-03-24T23:02:19.958865Z"
    }
   },
   "outputs": [
    {
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       "   Core.settings.HandleKeys = false;\n",
       "   Core.draw(\"root_plot_1742857339926\", obj, \"\");\n",
       "}\n",
       "\n",
       "function script_load_root_plot_1742857339926(src, on_error) {\n",
       "    let script = document.createElement('script');\n",
       "    script.src = src;\n",
       "    script.onload = function() { display_root_plot_1742857339926(JSROOT); };\n",
       "    script.onerror = function() { script.remove(); on_error(); };\n",
       "    document.head.appendChild(script);\n",
       "}\n",
       "\n",
       "if (typeof requirejs !== 'undefined') {\n",
       "\n",
       "    // We are in jupyter notebooks, use require.js which should be configured already\n",
       "    requirejs.config({\n",
       "       paths: { 'JSRootCore' : [ 'build/jsroot', 'https://root.cern/js/7.7.2/build/jsroot', 'https://jsroot.gsi.de/7.7.2/build/jsroot' ] }\n",
       "    })(['JSRootCore'],  function(Core) {\n",
       "       display_root_plot_1742857339926(Core);\n",
       "    });\n",
       "\n",
       "} else if (typeof JSROOT !== 'undefined') {\n",
       "\n",
       "   // JSROOT already loaded, just use it\n",
       "   display_root_plot_1742857339926(JSROOT);\n",
       "\n",
       "} else {\n",
       "\n",
       "    // We are in jupyterlab without require.js, directly loading jsroot\n",
       "    // Jupyterlab might be installed in a different base_url so we need to know it.\n",
       "    try {\n",
       "        var base_url = JSON.parse(document.getElementById('jupyter-config-data').innerHTML).baseUrl;\n",
       "    } catch(_) {\n",
       "        var base_url = '/';\n",
       "    }\n",
       "\n",
       "    // Try loading a local version of requirejs and fallback to cdn if not possible.\n",
       "    script_load_root_plot_1742857339926(base_url + 'static/build/jsroot.js', function(){\n",
       "        console.error('Fail to load JSROOT locally, please check your jupyter_notebook_config.py file');\n",
       "        script_load_root_plot_1742857339926('https://root.cern/js/7.7.2/build/jsroot.js', function(){\n",
       "            document.getElementById(\"root_plot_1742857339926\").innerHTML = \"Failed to load JSROOT\";\n",
       "        });\n",
       "    });\n",
       "}\n",
       "\n",
       "</script>\n"
      ],
      "text/plain": [
       "<IPython.core.display.HTML object>"
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     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "%%cpp\n",
    "\n",
    "Draw( qa_file_new, qa_file_ref, hist_name_prefix, \"drphi\" )-> Draw();"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Errors "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:19.965993Z",
     "iopub.status.busy": "2025-03-24T23:02:19.965594Z",
     "iopub.status.idle": "2025-03-24T23:02:20.115611Z",
     "shell.execute_reply": "2025-03-24T23:02:20.114356Z"
    }
   },
   "outputs": [
    {
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       "\n",
       "<script>\n",
       "\n",
       "function display_root_plot_1742857340100(Core) {\n",
       "   let obj = 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       "        console.error('Fail to load JSROOT locally, please check your jupyter_notebook_config.py file');\n",
       "        script_load_root_plot_1742857340100('https://root.cern/js/7.7.2/build/jsroot.js', function(){\n",
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   ],
   "source": [
    "%%cpp\n",
    "\n",
    "Draw( qa_file_new, qa_file_ref, hist_name_prefix, \"rphi_error\" )-> Draw();"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Pulls"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 17,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:20.121627Z",
     "iopub.status.busy": "2025-03-24T23:02:20.121072Z",
     "iopub.status.idle": "2025-03-24T23:02:20.272522Z",
     "shell.execute_reply": "2025-03-24T23:02:20.271262Z"
    }
   },
   "outputs": [
    {
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       "function display_root_plot_1742857340256(Core) {\n",
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   "source": [
    "%%cpp\n",
    "\n",
    "Draw( qa_file_new, qa_file_ref, hist_name_prefix, \"phi_pulls\" )-> Draw();"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# $z$ residuals, errors and pulls"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Residuals"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 18,
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     "shell.execute_reply": "2025-03-24T23:02:20.426594Z"
    }
   },
   "outputs": [
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       "   Core.settings.HandleKeys = false;\n",
       "   Core.draw(\"root_plot_1742857340411\", obj, \"\");\n",
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       "    let script = document.createElement('script');\n",
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       "    script.onload = function() { display_root_plot_1742857340411(JSROOT); };\n",
       "    script.onerror = function() { script.remove(); on_error(); };\n",
       "    document.head.appendChild(script);\n",
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       "if (typeof requirejs !== 'undefined') {\n",
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       "    // We are in jupyter notebooks, use require.js which should be configured already\n",
       "    requirejs.config({\n",
       "       paths: { 'JSRootCore' : [ 'build/jsroot', 'https://root.cern/js/7.7.2/build/jsroot', 'https://jsroot.gsi.de/7.7.2/build/jsroot' ] }\n",
       "    })(['JSRootCore'],  function(Core) {\n",
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       "   display_root_plot_1742857340411(JSROOT);\n",
       "\n",
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       "    // We are in jupyterlab without require.js, directly loading jsroot\n",
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       "    try {\n",
       "        var base_url = JSON.parse(document.getElementById('jupyter-config-data').innerHTML).baseUrl;\n",
       "    } catch(_) {\n",
       "        var base_url = '/';\n",
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       "    script_load_root_plot_1742857340411(base_url + 'static/build/jsroot.js', function(){\n",
       "        console.error('Fail to load JSROOT locally, please check your jupyter_notebook_config.py file');\n",
       "        script_load_root_plot_1742857340411('https://root.cern/js/7.7.2/build/jsroot.js', function(){\n",
       "            document.getElementById(\"root_plot_1742857340411\").innerHTML = \"Failed to load JSROOT\";\n",
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       "\n",
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     "metadata": {},
     "output_type": "display_data"
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   ],
   "source": [
    "%%cpp\n",
    "\n",
    "Draw( qa_file_new, qa_file_ref, hist_name_prefix, \"dz\" )-> Draw();"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Errors "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 19,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:20.433885Z",
     "iopub.status.busy": "2025-03-24T23:02:20.433376Z",
     "iopub.status.idle": "2025-03-24T23:02:20.580600Z",
     "shell.execute_reply": "2025-03-24T23:02:20.579323Z"
    }
   },
   "outputs": [
    {
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       "<script>\n",
       "\n",
       "function display_root_plot_1742857340564(Core) {\n",
       "   let obj = 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       "        console.error('Fail to load JSROOT locally, please check your jupyter_notebook_config.py file');\n",
       "        script_load_root_plot_1742857340564('https://root.cern/js/7.7.2/build/jsroot.js', function(){\n",
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    }
   ],
   "source": [
    "%%cpp\n",
    "\n",
    "Draw( qa_file_new, qa_file_ref, hist_name_prefix, \"z_error\" )-> Draw();"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Pulls"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 20,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:20.586112Z",
     "iopub.status.busy": "2025-03-24T23:02:20.585563Z",
     "iopub.status.idle": "2025-03-24T23:02:20.736604Z",
     "shell.execute_reply": "2025-03-24T23:02:20.735398Z"
    }
   },
   "outputs": [
    {
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       "function display_root_plot_1742857340720(Core) {\n",
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       "   Core.settings.HandleKeys = false;\n",
       "   Core.draw(\"root_plot_1742857340720\", obj, \"\");\n",
       "}\n",
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       "    let script = document.createElement('script');\n",
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       "    script.onload = function() { display_root_plot_1742857340720(JSROOT); };\n",
       "    script.onerror = function() { script.remove(); on_error(); };\n",
       "    document.head.appendChild(script);\n",
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       "    requirejs.config({\n",
       "       paths: { 'JSRootCore' : [ 'build/jsroot', 'https://root.cern/js/7.7.2/build/jsroot', 'https://jsroot.gsi.de/7.7.2/build/jsroot' ] }\n",
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       "\n",
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       "\n",
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       "\n",
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       "\n",
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       "    // Jupyterlab might be installed in a different base_url so we need to know it.\n",
       "    try {\n",
       "        var base_url = JSON.parse(document.getElementById('jupyter-config-data').innerHTML).baseUrl;\n",
       "    } catch(_) {\n",
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       "        console.error('Fail to load JSROOT locally, please check your jupyter_notebook_config.py file');\n",
       "        script_load_root_plot_1742857340720('https://root.cern/js/7.7.2/build/jsroot.js', function(){\n",
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       "</script>\n"
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     "metadata": {},
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    }
   ],
   "source": [
    "%%cpp\n",
    "\n",
    "Draw( qa_file_new, qa_file_ref, hist_name_prefix, \"z_pulls\" )-> Draw();"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Cluster sizes"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Cluster size"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 21,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:20.742856Z",
     "iopub.status.busy": "2025-03-24T23:02:20.742347Z",
     "iopub.status.idle": "2025-03-24T23:02:20.890014Z",
     "shell.execute_reply": "2025-03-24T23:02:20.888798Z"
    }
   },
   "outputs": [
    {
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       "function display_root_plot_1742857340874(Core) {\n",
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       "    } catch(_) {\n",
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       "        console.error('Fail to load JSROOT locally, please check your jupyter_notebook_config.py file');\n",
       "        script_load_root_plot_1742857340874('https://root.cern/js/7.7.2/build/jsroot.js', function(){\n",
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    }
   ],
   "source": [
    "%%cpp\n",
    "\n",
    "Draw( qa_file_new, qa_file_ref, hist_name_prefix, \"clus_size\" )-> Draw();"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Cluster azimuthal size "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 22,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:20.895534Z",
     "iopub.status.busy": "2025-03-24T23:02:20.895018Z",
     "iopub.status.idle": "2025-03-24T23:02:21.041641Z",
     "shell.execute_reply": "2025-03-24T23:02:21.040383Z"
    }
   },
   "outputs": [
    {
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       "\n",
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       "    requirejs.config({\n",
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       "    })(['JSRootCore'],  function(Core) {\n",
       "       display_root_plot_1742857341025(Core);\n",
       "    });\n",
       "\n",
       "} else if (typeof JSROOT !== 'undefined') {\n",
       "\n",
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       "\n",
       "} else {\n",
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       "    try {\n",
       "        var base_url = JSON.parse(document.getElementById('jupyter-config-data').innerHTML).baseUrl;\n",
       "    } catch(_) {\n",
       "        var base_url = '/';\n",
       "    }\n",
       "\n",
       "    // Try loading a local version of requirejs and fallback to cdn if not possible.\n",
       "    script_load_root_plot_1742857341025(base_url + 'static/build/jsroot.js', function(){\n",
       "        console.error('Fail to load JSROOT locally, please check your jupyter_notebook_config.py file');\n",
       "        script_load_root_plot_1742857341025('https://root.cern/js/7.7.2/build/jsroot.js', function(){\n",
       "            document.getElementById(\"root_plot_1742857341025\").innerHTML = \"Failed to load JSROOT\";\n",
       "        });\n",
       "    });\n",
       "}\n",
       "\n",
       "</script>\n"
      ],
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       "<IPython.core.display.HTML object>"
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     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "%%cpp\n",
    "\n",
    "Draw( qa_file_new, qa_file_ref, hist_name_prefix, \"clus_size_phi\" )-> Draw();"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Cluster $z$-size"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 23,
   "metadata": {
    "execution": {
     "iopub.execute_input": "2025-03-24T23:02:21.047145Z",
     "iopub.status.busy": "2025-03-24T23:02:21.046599Z",
     "iopub.status.idle": "2025-03-24T23:02:21.193222Z",
     "shell.execute_reply": "2025-03-24T23:02:21.191926Z"
    }
   },
   "outputs": [
    {
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    "%%cpp\n",
    "\n",
    "Draw( qa_file_new, qa_file_ref, hist_name_prefix, \"clus_size_z\" )-> Draw();"
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  {
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   "source": [
    "# Summary statistics"
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  {
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   "execution_count": 24,
   "metadata": {
    "execution": {
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     "text": [
      "This notebook contains 36 KSTets: combined Chi2/nDoF = -0 / 72, and combined __p-Value = 1__\n"
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   "source": [
    "%%cpp\n",
    "\n",
    "KSTestSummary::getInstance()->make_summary_txt(\"QA-Intt.txt\");"
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   "execution_count": 25,
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       "function display_root_plot_1742857341480(Core) {\n",
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       "   Core.settings.HandleKeys = false;\n",
       "   Core.draw(\"root_plot_1742857341480\", obj, \"\");\n",
       "}\n",
       "\n",
       "function script_load_root_plot_1742857341480(src, on_error) {\n",
       "    let script = document.createElement('script');\n",
       "    script.src = src;\n",
       "    script.onload = function() { display_root_plot_1742857341480(JSROOT); };\n",
       "    script.onerror = function() { script.remove(); on_error(); };\n",
       "    document.head.appendChild(script);\n",
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       "\n",
       "if (typeof requirejs !== 'undefined') {\n",
       "\n",
       "    // We are in jupyter notebooks, use require.js which should be configured already\n",
       "    requirejs.config({\n",
       "       paths: { 'JSRootCore' : [ 'build/jsroot', 'https://root.cern/js/7.7.2/build/jsroot', 'https://jsroot.gsi.de/7.7.2/build/jsroot' ] }\n",
       "    })(['JSRootCore'],  function(Core) {\n",
       "       display_root_plot_1742857341480(Core);\n",
       "    });\n",
       "\n",
       "} else if (typeof JSROOT !== 'undefined') {\n",
       "\n",
       "   // JSROOT already loaded, just use it\n",
       "   display_root_plot_1742857341480(JSROOT);\n",
       "\n",
       "} else {\n",
       "\n",
       "    // We are in jupyterlab without require.js, directly loading jsroot\n",
       "    // Jupyterlab might be installed in a different base_url so we need to know it.\n",
       "    try {\n",
       "        var base_url = JSON.parse(document.getElementById('jupyter-config-data').innerHTML).baseUrl;\n",
       "    } catch(_) {\n",
       "        var base_url = '/';\n",
       "    }\n",
       "\n",
       "    // Try loading a local version of requirejs and fallback to cdn if not possible.\n",
       "    script_load_root_plot_1742857341480(base_url + 'static/build/jsroot.js', function(){\n",
       "        console.error('Fail to load JSROOT locally, please check your jupyter_notebook_config.py file');\n",
       "        script_load_root_plot_1742857341480('https://root.cern/js/7.7.2/build/jsroot.js', function(){\n",
       "            document.getElementById(\"root_plot_1742857341480\").innerHTML = \"Failed to load JSROOT\";\n",
       "        });\n",
       "    });\n",
       "}\n",
       "\n",
       "</script>\n"
      ],
      "text/plain": [
       "<IPython.core.display.HTML object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "%%cpp\n",
    "\n",
    "KSTestSummary::getInstance()->make_summary_TCanvas() -> Draw();"
   ]
  }
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