XML files take precedence over open images.
i.e., if an xml file is given for either the moving (or target) source,
then the image that is specified for the moving (target) source will be ignored. ") DOCMSG #@ File(label="Moving xml", required=false, style="extensions:xml" ) movingXml #@ File(label="Target xml", required=false, style="extensions:xml" ) targetXml #@ ImagePlus(label="Moving image", autofill=true, required=false, description="Only used if moving xml is empty" ) movingIp #@ ImagePlus(label="Target image", autofill=true, required=false, description="Only used if target xml is empty" ) targetIp #@ File(label="Landmark file", required=false, style="extensions:csv") landmarksFile import java.lang.Exception; import bigwarp.BigWarp; import bigwarp.BigWarpInit; import bigwarp.landmarks.LandmarkTableModel; import bdv.export.ProgressWriterConsole; data = null; if( movingXml != null && targetXml != null ){ data = BigWarpInit.createBigWarpDataFromXML( movingXml.getAbsolutePath(), targetXml.getAbsolutePath()); } else if( movingXml != null ){ data = BigWarpInit.createBigWarpDataFromXMLImagePlus( movingXml.getAbsolutePath(), targetIp ); } else if( targetXml != null ) { data = BigWarpInit.createBigWarpDataFromImagePlus( movingXml.getAbsolutePath(), targetIp ); } else{ data = BigWarpInit.createBigWarpDataFromImages( movingIp, targetIp); } try { bw = new BigWarp( data, "bigwarp", new ProgressWriterConsole() ); /* load the landmark points if there are any */ if ( landmarksFile != null ) bw.getLandmarkPanel().getTableModel().load( landmarksFile ); }catch(Exception e) { e.printStackTrace(); }