assembly:
  assem_level: scaffold
  assem_version: 1
  sample_id: OscheiusSUBSET
  latin_name: to_provide_taxonomic_rank
  defined_class: nematode
  project_id: DTOL
reference_file: /lustre/scratch123/tol/resources/treeval/treeval-testdata/TreeValSmallData/assembly/draft/SUBSET_genome/Oscheius_SUBSET.fasta
map_order: length
assem_reads:
  read_type: hifi
  read_data:
    - /lustre/scratch123/tol/resources/treeval/treeval-testdata/TreeValSmallData/genomic_data/pacbio/subset.fasta.gz
  supplementary_data: path
hic_data:
  hic_cram:
    - /lustre/scratch123/tol/resources/treeval/treeval-testdata/TreeValSmallData/genomic_data/hic-arima2/SUBSET-1000.cram
    - /lustre/scratch123/tol/resources/treeval/treeval-testdata/TreeValSmallData/genomic_data/hic-arima2/SUBSET-2000.cram
alignment:
  genesets:
    - /lustre/scratch123/tol/resources/treeval/treeval-testdata/TreeValSmallData/gene_set/nematode/csv_data/CaenorhabditisElegans.WBcel235-data.csv
intron:
  size: "50k"
telomere:
  teloseq: TTAGGG
synteny:
  - /lustre/scratch123/tol/resources/treeval/synteny/bird/bCucCan1.fasta
  - /lustre/scratch123/tol/resources/treeval/synteny/bird/bGalGal1.fasta
busco:
  lineages_path: /lustre/scratch123/tol/resources/busco/v5
  lineage: nematoda_odb10