""" ====================================================== Scalable learning with polynomial kernel approximation ====================================================== .. currentmodule:: sklearn.kernel_approximation This example illustrates the use of :class:`PolynomialCountSketch` to efficiently generate polynomial kernel feature-space approximations. This is used to train linear classifiers that approximate the accuracy of kernelized ones. We use the Covtype dataset [2], trying to reproduce the experiments on the original paper of Tensor Sketch [1], i.e. the algorithm implemented by :class:`PolynomialCountSketch`. First, we compute the accuracy of a linear classifier on the original features. Then, we train linear classifiers on different numbers of features (`n_components`) generated by :class:`PolynomialCountSketch`, approximating the accuracy of a kernelized classifier in a scalable manner. """ # Authors: The scikit-learn developers # SPDX-License-Identifier: BSD-3-Clause # %% # Preparing the data # ------------------ # # Load the Covtype dataset, which contains 581,012 samples # with 54 features each, distributed among 6 classes. The goal of this dataset # is to predict forest cover type from cartographic variables only # (no remotely sensed data). After loading, we transform it into a binary # classification problem to match the version of the dataset in the # LIBSVM webpage [2], which was the one used in [1]. from sklearn.datasets import fetch_covtype X, y = fetch_covtype(return_X_y=True) y[y != 2] = 0 y[y == 2] = 1 # We will try to separate class 2 from the other 6 classes. # %% # Partitioning the data # --------------------- # # Here we select 5,000 samples for training and 10,000 for testing. # To actually reproduce the results in the original Tensor Sketch paper, # select 100,000 for training. from sklearn.model_selection import train_test_split X_train, X_test, y_train, y_test = train_test_split( X, y, train_size=5_000, test_size=10_000, random_state=42 ) # %% # Feature normalization # --------------------- # # Now scale features to the range [0, 1] to match the format of the dataset in # the LIBSVM webpage, and then normalize to unit length as done in the # original Tensor Sketch paper [1]. from sklearn.pipeline import make_pipeline from sklearn.preprocessing import MinMaxScaler, Normalizer mm = make_pipeline(MinMaxScaler(), Normalizer()) X_train = mm.fit_transform(X_train) X_test = mm.transform(X_test) # %% # Establishing a baseline model # ----------------------------- # # As a baseline, train a linear SVM on the original features and print the # accuracy. We also measure and store accuracies and training times to # plot them later. import time from sklearn.svm import LinearSVC results = {} lsvm = LinearSVC() start = time.time() lsvm.fit(X_train, y_train) lsvm_time = time.time() - start lsvm_score = 100 * lsvm.score(X_test, y_test) results["LSVM"] = {"time": lsvm_time, "score": lsvm_score} print(f"Linear SVM score on raw features: {lsvm_score:.2f}%") # %% # Establishing the kernel approximation model # ------------------------------------------- # # Then we train linear SVMs on the features generated by # :class:`PolynomialCountSketch` with different values for `n_components`, # showing that these kernel feature approximations improve the accuracy # of linear classification. In typical application scenarios, `n_components` # should be larger than the number of features in the input representation # in order to achieve an improvement with respect to linear classification. # As a rule of thumb, the optimum of evaluation score / run time cost is # typically achieved at around `n_components` = 10 * `n_features`, though this # might depend on the specific dataset being handled. Note that, since the # original samples have 54 features, the explicit feature map of the # polynomial kernel of degree four would have approximately 8.5 million # features (precisely, 54^4). Thanks to :class:`PolynomialCountSketch`, we can # condense most of the discriminative information of that feature space into a # much more compact representation. While we run the experiment only a single time # (`n_runs` = 1) in this example, in practice one should repeat the experiment several # times to compensate for the stochastic nature of :class:`PolynomialCountSketch`. from sklearn.kernel_approximation import PolynomialCountSketch n_runs = 1 N_COMPONENTS = [250, 500, 1000, 2000] for n_components in N_COMPONENTS: ps_lsvm_time = 0 ps_lsvm_score = 0 for _ in range(n_runs): pipeline = make_pipeline( PolynomialCountSketch(n_components=n_components, degree=4), LinearSVC(), ) start = time.time() pipeline.fit(X_train, y_train) ps_lsvm_time += time.time() - start ps_lsvm_score += 100 * pipeline.score(X_test, y_test) ps_lsvm_time /= n_runs ps_lsvm_score /= n_runs results[f"LSVM + PS({n_components})"] = { "time": ps_lsvm_time, "score": ps_lsvm_score, } print( f"Linear SVM score on {n_components} PolynomialCountSketch " + f"features: {ps_lsvm_score:.2f}%" ) # %% # Establishing the kernelized SVM model # ------------------------------------- # # Train a kernelized SVM to see how well :class:`PolynomialCountSketch` # is approximating the performance of the kernel. This, of course, may take # some time, as the SVC class has a relatively poor scalability. This is the # reason why kernel approximators are so useful: from sklearn.svm import SVC ksvm = SVC(C=500.0, kernel="poly", degree=4, coef0=0, gamma=1.0) start = time.time() ksvm.fit(X_train, y_train) ksvm_time = time.time() - start ksvm_score = 100 * ksvm.score(X_test, y_test) results["KSVM"] = {"time": ksvm_time, "score": ksvm_score} print(f"Kernel-SVM score on raw features: {ksvm_score:.2f}%") # %% # Comparing the results # --------------------- # # Finally, plot the results of the different methods against their training # times. As we can see, the kernelized SVM achieves a higher accuracy, # but its training time is much larger and, most importantly, will grow # much faster if the number of training samples increases. import matplotlib.pyplot as plt fig, ax = plt.subplots(figsize=(7, 7)) ax.scatter( [ results["LSVM"]["time"], ], [ results["LSVM"]["score"], ], label="Linear SVM", c="green", marker="^", ) ax.scatter( [ results["LSVM + PS(250)"]["time"], ], [ results["LSVM + PS(250)"]["score"], ], label="Linear SVM + PolynomialCountSketch", c="blue", ) for n_components in N_COMPONENTS: ax.scatter( [ results[f"LSVM + PS({n_components})"]["time"], ], [ results[f"LSVM + PS({n_components})"]["score"], ], c="blue", ) ax.annotate( f"n_comp.={n_components}", ( results[f"LSVM + PS({n_components})"]["time"], results[f"LSVM + PS({n_components})"]["score"], ), xytext=(-30, 10), textcoords="offset pixels", ) ax.scatter( [ results["KSVM"]["time"], ], [ results["KSVM"]["score"], ], label="Kernel SVM", c="red", marker="x", ) ax.set_xlabel("Training time (s)") ax.set_ylabel("Accuracy (%)") ax.legend() plt.show() # %% # References # ========== # # [1] Pham, Ninh and Rasmus Pagh. "Fast and scalable polynomial kernels via # explicit feature maps." KDD '13 (2013). # https://doi.org/10.1145/2487575.2487591 # # [2] LIBSVM binary datasets repository # https://www.csie.ntu.edu.tw/~cjlin/libsvmtools/datasets/binary.html