# ============================================================================
# Config file for Sequana bioconvert
# ==========================================[ Sections for the users ]========
#
# One of input_directory, input_pattern and input_samples must be provided
# If input_directory provided, use it otherwise if input_pattern provided,
# use it, otherwise use input_samples.
# ============================================================================
sequana_wrappers: v23.12.5


input_directory: /home/cokelaer/Work/github/sequana_bioconvert
input_pattern: '*fastq.gz'

# ======================================= [apptainers] ======================
#
apptainers:
  bioconvert: "https://zenodo.org/record/7704649/files/bioconvert_1.0.0.img"
  graphviz: "https://zenodo.org/record/7928262/files/graphviz_7.0.5.img"

##############################################################################
# Your section
#
# :Parameters:
#
# - options: string with any valid FastQC options
bioconvert:
    command: fastq2fasta
    input_extension: fastq.gz
    output_extension: fasta.gz
    method: ''
    resources:
        mem: 4G