# ============================================================================
# Config file for Quality Control
# ==========================================[ Sections for the users ]========
#
# One of input_directory, input_pattern and input_samples must be provided
# If input_directory provided, use it otherwise if input_pattern provided,
# use it, otherwise use input_samples.
# ============================================================================


input_directory: /home/cokelaer/Work/github/sequana_bioconvert
input_readtag: _R[12]_
input_pattern: '*fastq.gz'


##############################################################################
# Your section
#
# :Parameters:
#
# - options: string with any valid FastQC options
bioconvert:
    command: fastq2fasta
    input_extension: fastq.gz
    output_extension: fasta.gz
    method: ''