hub TsudaMegaExp
shortLabel Tsuda Mega Exp
longLabel Tsuda Mega Exp ATACseq
useOneFile on
email stsuda@ufl.edu

genome mm39

track Milner_TRM
compositeTrack on
shortLabel Milner D7 TRM
longLabel Milner D7 TRM ATAC Nature 2017
type bigWig
visibility full
allButtonPair on

  track D7_IEL_rep1
  parent Milner_TRM on 
  shortLabel D7 IEL rep1
  longLabel D7 IEL rep1 LCMV-Arm Milner 2017 Nature
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 237,99,53
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/D7_IEL_Rep1.bw

  track D7_IEL_rep2
  parent Milner_TRM on  
  shortLabel D7 IEL rep2
  longLabel D7 IEL rep2 LCMV-Arm Milner 2017 Nature
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 237,99,53
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/D7_IEL_Rep2.bw

  track D7_Kidney_rep1
  parent Milner_TRM on  
  shortLabel D7 Kidney rep1
  longLabel D7 Kidney rep1 LCMV-Arm Milner 2017 Nature
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 141,180,173
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/D7_Kidney_Rep1.bw

  track D7_Kidney_rep2
  parent Milner_TRM on  
  shortLabel D7 Kidney rep2
  longLabel D7 Kidney rep2 LCMV-Arm Milner 2017 Nature
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 141,180,173
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/D7_Kidney_Rep2.bw

  track D7_Spleen_rep1
  parent Milner_TRM on 
  shortLabel D7 Spleen rep1
  longLabel D7 Spleen rep1 LCMV-Arm Milner 2017 Nature
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 2,108,128
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/D7_Spleen_Rep1.bw

  track D7_Spleen_rep2
  parent Milner_TRM on  
  shortLabel D7 Spleen rep2
  longLabel D7 Spleen rep2 LCMV-Arm Milner 2017 Nature
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 2,108,128
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/D7_Spleen_Rep2.bw

track mulitWig_Milner
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
shortLabel Milner D7 TRM
longLabel Milner D7 TRM ATAC Nature 2017
type bigWig
visibility hide
allButtonPair on

  track D7_IEL_rep1multi
  parent mulitWig_Milner on 
  shortLabel D7 IEL rep1
  longLabel D7 IEL rep1 LCMV-Arm Milner 2017 Nature
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 237,99,53
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/D7_IEL_Rep1.bw

  track D7_IEL_rep2multi
  parent mulitWig_Milner on  
  shortLabel D7 IEL rep2
  longLabel D7 IEL rep2 LCMV-Arm Milner 2017 Nature
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 237,99,53
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/D7_IEL_Rep2.bw


track D5_shEts1_ATAC
compositeTrack on
shortLabel D5_shEts1_ATAC
longLabel D5 shEts1 ATAC spleen
type bigWig
visibility full
allButtonPair on

  track D5_shEts1_rep1
  parent D5_shEts1_ATAC on
  shortLabel D5 shEts1 rep1 
  longLabel D5 shEts1 rep1 spleen 
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 126,85,147
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/shEts1_D5_Rep1.bw

  track D5_shEts1_rep2
  parent D5_shEts1_ATAC on
  shortLabel D5 shEts1 rep2
  longLabel D5 shEts1 rep2 spleen 
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 126,85,147
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/shEts1_D5_Rep2.bw

  track D5_shCD19_rep1
  parent D5_shEts1_ATAC on
  shortLabel D5 shCD19 rep1
  longLabel D5 shCD19 rep1 spleen
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 135,133,162
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/shCD19_D5_Rep1.bw

  track D5_shCD19_rep2
  parent D5_shEts1_ATAC on
  shortLabel D5 shCD19 rep2
  longLabel D5 shCD19 rep2 spleen
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 135,133,162
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/shCD19_D5_Rep2.bw

track ScottBrowne_ATAC
compositeTrack on
shortLabel ScottBrowne_ATAC
longLabel ScottBrowne_ATAC 2016 Immunity
type bigWig
visibility full
allButtonPair on

  track CTLmem_rep1
  parent ScottBrowne_ATAC on
  shortLabel CTLmem 1
  longLabel CTLmem rep1 D35 LCMV-Arm Scott-Browne 2016 Immunity
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 98,192,203
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/ScottBrowne2016/CTLmem_Rep1.bw
  
  track CTLmem_rep2
  parent ScottBrowne_ATAC on
  shortLabel CTLmem 2
  longLabel CTLmem rep2 D35 LCMV-Arm Scott-Browne 2016 Immunity
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 98,192,203
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/ScottBrowne2016/CTLmem_Rep2.bw

  track MPEC_1
  parent ScottBrowne_ATAC on
  shortLabel MPEC 1
  longLabel MPEC 1 D8 LCMV-Arm Scott-Browne 2016 Immunity
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 70,149,180
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/ScottBrowne2016/MPEC_Rep1.bw

  track MPEC_2
  parent ScottBrowne_ATAC on
  shortLabel MPEC 2
  longLabel MPEC 2 D8 LCMV-Arm Scott-Browne 2016 Immunity
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 70,149,180
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/ScottBrowne2016/MPEC_Rep2.bw

  track MPEC_3
  parent ScottBrowne_ATAC on
  shortLabel MPEC 3
  longLabel MPEC 3 D8 LCMV-Arm Scott-Browne 2016 Immunity
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 70,149,180
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/ScottBrowne2016/MPEC_Rep3.bw
 
  track SLEC_1
  parent ScottBrowne_ATAC on
  shortLabel SLEC 1
  longLabel SLEC 1 D8 LCMV-Arm Scott-Browne 2016 Immunity
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 245,174,119
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/ScottBrowne2016/SLEC_Rep1.bw

  track SLEC_2
  parent ScottBrowne_ATAC on
  shortLabel SLEC 2
  longLabel SLEC 2 D8 LCMV-Arm Scott-Browne 2016 Immunity
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 245,174,119
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/ScottBrowne2016/SLEC_Rep2.bw

  track SLEC_3
  parent ScottBrowne_ATAC on
  shortLabel SLEC 3
  longLabel SLEC 3 D8 LCMV-Arm Scott-Browne 2016 Immunity
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 245,174,119
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/ScottBrowne2016/SLEC_Rep3.bw

  track KLRG1_d35_rep1
  parent ScottBrowne_ATAC on
  shortLabel KLRG1 D35 1
  longLabel D35 KLRG1hi spleen rep1 LCMV-Arm Scott-Browne 2016 Immunity
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 233,127,76
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/ScottBrowne2016/KLRG1_d35_Rep1.bw

track Ets1KO_invitro_ATAC
compositeTrack on
shortLabel Ets1KO_invitro_ATAC
longLabel Ets1KO_invitro_ATAC activation time course
type bigWig
visibility full
allButtonPair on

  track naive_WT_rep1
  parent Ets1KO_invitro_ATAC on
  shortLabel naive_WT_rep1
  longLabel WT naive 0h dLck rep1 invitro 
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 57,65,77
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/Ets1KO_invitro/WT1_0h_dLck_rep1.bw

  track naive_Ets1KO_rep1
  parent Ets1KO_invitro_ATAC on
  shortLabel naive_Ets1KO_rep1
  longLabel Ets1KO naive 0h dLck rep1 invitro 
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 183,162,247
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/Ets1KO_invitro/KO7_0h_dLck_rep1.bw
   
  track 2h_WT_rep1
  parent Ets1KO_invitro_ATAC on
  shortLabel 2h_WT_rep1
  longLabel WT 2h dLck rep1 invitro
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 57,65,77
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/Ets1KO_invitro/WT2_2h_dLck_rep1.bw
  
  track 2h_Ets1KO_rep1
  parent Ets1KO_invitro_ATAC on
  shortLabel 2h_Ets1KO_rep1
  longLabel Ets1KO 2h dLck rep1 invitro
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 183,162,247
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/Ets1KO_invitro/KO8_2h_dLck_rep1.bw
  
  track 6h_WT_rep1
  parent Ets1KO_invitro_ATAC on
  shortLabel 6h_WT_rep1
  longLabel WT 6h dLck rep1 invitro
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 57,65,77
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/Ets1KO_invitro/WT3_6h_dLck_rep1.bw
  
  track 6h_Ets1KO_rep1
  parent Ets1KO_invitro_ATAC on
  shortLabel 6h_Ets1KO_rep1
  longLabel Ets1KO 6h dLck rep1 invitro
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 183,162,247
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/Ets1KO_invitro/KO9_6h_dLck_rep1.bw
  
  track 12h_WT_rep1
  parent Ets1KO_invitro_ATAC on
  shortLabel 12h_WT_rep1
  longLabel WT 12h dLck rep1 invitro
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 57,65,77
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/Ets1KO_invitro/WT4_12h_dLck_rep1.bw
  
  track 12h_Ets1KO_rep1
  parent Ets1KO_invitro_ATAC on
  shortLabel 12h_Ets1KO_rep1
  longLabel Ets1KO 12h dLck rep1 invitro
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 183,162,247
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/Ets1KO_invitro/KO10_12h_dLck_rep1.bw
  
  track 24h_WT_rep1
  parent Ets1KO_invitro_ATAC on
  shortLabel 24h_WT_rep1
  longLabel WT 24h dLck rep1 invitro
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 57,65,77
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/Ets1KO_invitro/WT5_24h_dLck_rep1.bw
  
  track 24h_Ets1KO_rep3
  parent Ets1KO_invitro_ATAC on
  shortLabel 24h_Ets1KO_rep3
  longLabel Ets1KO 24h dLck rep3 invitro
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 183,162,247
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/Ets1KO_invitro/KO35_24h_dLck_rep3.bw
  
  track 48h_WT_rep1
  parent Ets1KO_invitro_ATAC on
  shortLabel 48h_WT_rep1
  longLabel WT 48h dLck rep1 invitro
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 57,65,77
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/Ets1KO_invitro/WT6_48h_dLck_rep1.bw
  
  track 48h_Ets1KO_rep1
  parent Ets1KO_invitro_ATAC on
  shortLabel 48h_Ets1KO_rep1
  longLabel Ets1KO 48h dLck rep1 invitro
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 183,162,247
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/Ets1KO_invitro/KO12_48h_dLck_rep1.bw
  
track Runx3KO_invitro_ATAC
compositeTrack on
shortLabel Runx3KO_invitro_ATAC
longLabel Runx3KO_invitro_ATAC activation time course
type bigWig
visibility full
allButtonPair on

  track 0H_WT_rep1
  parent Runx3KO_invitro_ATAC on
  shortLabel 0H_WT_rep1
  longLabel 0H_WT_rep1 invitro
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 1,64,64
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/Wang2018/0H_WT_Rep1.bw
  
  track 0H_WT_rep2
  parent Runx3KO_invitro_ATAC on
  shortLabel 0H_WT_rep2
  longLabel 0H_WT_rep2 invitro
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 1,64,64
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/Wang2018/0H_WT_Rep2.bw
  
  track 0H_Runx3_KO_rep1
  parent Runx3KO_invitro_ATAC on
  shortLabel 0H_Runx3_KO_rep1
  longLabel 0H_Runx3_KO_rep1 invitro
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 166,59,13
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/Wang2018/0H_Runx3_KO_Rep1.bw
  
  track 0H_Runx3_KO_rep2
  parent Runx3KO_invitro_ATAC on
  shortLabel 0H_Runx3_KO_rep2
  longLabel 0H_Runx3_KO_rep2 invitro
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 166,59,13
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/Wang2018/0H_Runx3_KO_Rep2.bw
  
  track 24H_WT_rep1
  parent Runx3KO_invitro_ATAC on
  shortLabel 24H_WT_rep1
  longLabel 24H_WT_rep1 invitro
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 1,64,64
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/Wang2018/24H_WT_Rep1.bw
  
  track 24H_WT_rep2
  parent Runx3KO_invitro_ATAC on
  shortLabel 24H_WT_rep2
  longLabel 24H_WT_rep2 invitro
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 1,64,64
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/Wang2018/24H_WT_Rep2.bw
  
  track 24H_Runx3_KO_rep1
  parent Runx3KO_invitro_ATAC on
  shortLabel 24H_Runx3_KO_rep1
  longLabel 24H_Runx3_KO_rep1 invitro
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 166,59,13
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/Wang2018/24H_Runx3_KO_Rep1.bw
  
  track 24H_Runx3_KO_rep2
  parent Runx3KO_invitro_ATAC on
  shortLabel 24H_Runx3_KO_rep2
  longLabel 24H_Runx3_KO_rep2 invitro
  type bigWig
  maxHeightPixels 30
  autoScale group
  color 166,59,13
  bigDataUrl https://data.cyverse.org/dav-anon/iplant/home/stsuda/Wang2018/24H_Runx3_KO_Rep2.bw