#!/bin/bash

## adpated from https://raw.githubusercontent.com/rocker-org/rocker-versioned2/master/scripts/install_tidyverse.sh

## build ARGs
NCPUS=${NCPUS:-1}

# Override CRAN to a public mirror that should be reachable
ENV CRAN=https://cloud.r-project.org

set -e
apt-get update -qq && apt-get -y --no-install-recommends install \
    libxml2-dev \
    libcairo2-dev \
    libgit2-dev \
    default-libmysqlclient-dev \
    libpq-dev \
    libsasl2-dev \
    libsqlite3-dev \
    libssh2-1-dev \
    libxtst6 \
    libcurl4-openssl-dev \
    unixodbc-dev && \
  rm -rf /var/lib/apt/lists/*

install2.r --error --skipinstalled -r $CRAN -n $NCPUS \
    tidyverse \
    devtools \
    rmarkdown \
    BiocManager \
    vroom \
    gert

## dplyr database backends
install2.r --error --skipinstalled -r $CRAN -n $NCPUS \
    arrow \
    dbplyr \
    DBI \
    dtplyr \
    nycflights13 \
    Lahman \
    RMariaDB \
    RPostgres \
    RSQLite \
    fst

## additional packages
install2.r --error --skipinstalled -r $CRAN -n $NCPUS \
    qqman \
    data.table \
    ggplot2 \
    RColorBrewer \
    ggrepel \
    optparse \
    ggthemes \
    plotrix \
    R.utils


## a bridge to far? -- brings in another 60 packages
# install2.r --error --skipinstalled -r $CRAN -n $NCPUS tidymodels

 rm -rf /tmp/downloaded_packages