drwxr-xr-x	root/root	usr/
drwxr-xr-x	root/root	usr/bin/
-rwxr-xr-x	root/root	usr/bin/aline
-rwxr-xr-x	root/root	usr/bin/convertdump
drwxr-xr-x	root/root	usr/lib/
drwxr-xr-x	root/root	usr/lib/aline/
drwxr-xr-x	root/root	usr/lib/aline/plugins/
-rw-r--r--	root/root	usr/lib/aline/plugins/AlinePlugin.pm
-rw-r--r--	root/root	usr/lib/aline/plugins/aColourPicker.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/aDeleteResidues.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/aProtTool.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/cCalCons.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/cCalSim.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/cClearSeq.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/cColBfac.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/cColRes.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/eAddBlast.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/eSeqList.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/fInputPDB.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/fInputPIR.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/mDefaultCM.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/mDefaultTooltips.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/mKeycodeTest.inactive
-rw-r--r--	root/root	usr/lib/aline/plugins/sPrint.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/tAddConsensus.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/tAddDisEmbl.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/tAddGraph.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/tAddNumbers.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/tAddSecStruct.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/tAddSignalP.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/tAlignment.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/tClearGapCols.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/tCorrMutations.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/tFixDbnames.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/tMatchPattern.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/tPymolColors.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/tRunChainsaw.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/tUnattachAll.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/tUndupe.plugin
-rw-r--r--	root/root	usr/lib/aline/plugins/test.dat
drwxr-xr-x	root/root	usr/share/
drwxr-xr-x	root/root	usr/share/aline/
drwxr-xr-x	root/root	usr/share/aline/colourschemes/
-rw-r--r--	root/root	usr/share/aline/colourschemes/Cyan to Red (50 levels).alc
-rw-r--r--	root/root	usr/share/aline/colourschemes/Greyscale (10 levels).alc
-rw-r--r--	root/root	usr/share/aline/colourschemes/Saturation (Blue, 50 levels).alc
-rw-r--r--	root/root	usr/share/aline/colourschemes/Saturation (Red, 50 levels).alc
-rw-r--r--	root/root	usr/share/aline/colourschemes/Saturation (Yellow, 50 levels).alc
drwxr-xr-x	root/root	usr/share/aline/example/
-rw-r--r--	root/root	usr/share/aline/example/rada.aline
-rw-r--r--	root/root	usr/share/aline/example/rada.eps
-rw-r--r--	root/root	usr/share/aline/example/rada.png
drwxr-xr-x	root/root	usr/share/applications/
-rw-r--r--	root/root	usr/share/applications/aline.desktop
drwxr-xr-x	root/root	usr/share/pixmaps/
-rw-r--r--	root/root	usr/share/pixmaps/aline.png