drwxr-xr-x	root/root	usr/
drwxr-xr-x	root/root	usr/bin/
-rwxr-xr-x	root/root	usr/bin/annotateBed
-rwxr-xr-x	root/root	usr/bin/bamToBed
-rwxr-xr-x	root/root	usr/bin/bamToFastq
-rwxr-xr-x	root/root	usr/bin/bed12ToBed6
-rwxr-xr-x	root/root	usr/bin/bedToBam
-rwxr-xr-x	root/root	usr/bin/bedToIgv
-rwxr-xr-x	root/root	usr/bin/bedpeToBam
-rwxr-xr-x	root/root	usr/bin/bedtools
-rwxr-xr-x	root/root	usr/bin/closestBed
-rwxr-xr-x	root/root	usr/bin/clusterBed
-rwxr-xr-x	root/root	usr/bin/complementBed
-rwxr-xr-x	root/root	usr/bin/coverageBed
-rwxr-xr-x	root/root	usr/bin/expandCols
-rwxr-xr-x	root/root	usr/bin/fastaFromBed
-rwxr-xr-x	root/root	usr/bin/flankBed
-rwxr-xr-x	root/root	usr/bin/genomeCoverageBed
-rwxr-xr-x	root/root	usr/bin/getOverlap
-rwxr-xr-x	root/root	usr/bin/groupBy
-rwxr-xr-x	root/root	usr/bin/intersectBed
-rwxr-xr-x	root/root	usr/bin/linksBed
-rwxr-xr-x	root/root	usr/bin/mapBed
-rwxr-xr-x	root/root	usr/bin/maskFastaFromBed
-rwxr-xr-x	root/root	usr/bin/mergeBed
-rwxr-xr-x	root/root	usr/bin/multiBamCov
-rwxr-xr-x	root/root	usr/bin/multiIntersectBed
-rwxr-xr-x	root/root	usr/bin/nucBed
-rwxr-xr-x	root/root	usr/bin/pairToBed
-rwxr-xr-x	root/root	usr/bin/pairToPair
-rwxr-xr-x	root/root	usr/bin/randomBed
-rwxr-xr-x	root/root	usr/bin/shiftBed
-rwxr-xr-x	root/root	usr/bin/shuffleBed
-rwxr-xr-x	root/root	usr/bin/slopBed
-rwxr-xr-x	root/root	usr/bin/sortBed
-rwxr-xr-x	root/root	usr/bin/subtractBed
-rwxr-xr-x	root/root	usr/bin/tagBam
-rwxr-xr-x	root/root	usr/bin/unionBedGraphs
-rwxr-xr-x	root/root	usr/bin/windowBed
-rwxr-xr-x	root/root	usr/bin/windowMaker
drwxr-xr-x	root/root	usr/share/
drwxr-xr-x	root/root	usr/share/bedtools/
drwxr-xr-x	root/root	usr/share/bedtools/data/
-rw-r--r--	root/root	usr/share/bedtools/data/aluY.chr1.bed.gz
-rw-r--r--	root/root	usr/share/bedtools/data/gerp.chr1.bed.gz
-rwxr-xr-x	root/root	usr/share/bedtools/data/knownGene.hg18.chr21.bed
-rw-r--r--	root/root	usr/share/bedtools/data/knownGene.hg18.chr21.short.bed
-rw-r--r--	root/root	usr/share/bedtools/data/refseq.chr1.exons.bed.gz
-rw-r--r--	root/root	usr/share/bedtools/data/simpleRepeats.chr1.bed.gz
drwxr-xr-x	root/root	usr/share/bedtools/genomes/
-rw-r--r--	root/root	usr/share/bedtools/genomes/human.hg18.genome
-rw-r--r--	root/root	usr/share/bedtools/genomes/human.hg19.genome
-rw-r--r--	root/root	usr/share/bedtools/genomes/human.hg38.genome
-rw-r--r--	root/root	usr/share/bedtools/genomes/mouse.mm10.genome
-rw-r--r--	root/root	usr/share/bedtools/genomes/mouse.mm8.genome
-rw-r--r--	root/root	usr/share/bedtools/genomes/mouse.mm9.genome
drwxr-xr-x	root/root	usr/share/bedtools/scripts/
-rwxr-xr-x	root/root	usr/share/bedtools/scripts/makeBashScripts.py
-rwxr-xr-x	root/root	usr/share/bedtools/scripts/vcfsort.sh