drwxr-xr-x root/root usr/ drwxr-xr-x root/root usr/bin/ -rwxr-xr-x root/root usr/bin/check_structure drwxr-xr-x root/root usr/lib/ drwxr-xr-x root/root usr/lib/python3.10/ drwxr-xr-x root/root usr/lib/python3.10/site-packages/ drwxr-xr-x root/root usr/lib/python3.10/site-packages/biobb_structure_checking-3.13.4-py3.10.egg-info/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking-3.13.4-py3.10.egg-info/PKG-INFO -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking-3.13.4-py3.10.egg-info/SOURCES.txt -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking-3.13.4-py3.10.egg-info/dependency_links.txt -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking-3.13.4-py3.10.egg-info/entry_points.txt -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking-3.13.4-py3.10.egg-info/requires.txt -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking-3.13.4-py3.10.egg-info/top_level.txt drwxr-xr-x root/root usr/lib/python3.10/site-packages/biobb_structure_checking/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/__init__.py (EMPTY) drwxr-xr-x root/root usr/lib/python3.10/site-packages/biobb_structure_checking/__pycache__/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/__pycache__/__init__.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/__pycache__/check_structure.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/__pycache__/constants.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/__pycache__/modeller_manager.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/__pycache__/mutation_manager.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/__pycache__/structure_checking.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/__pycache__/structure_manager.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/check_structure.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__init__.py (EMPTY) drwxr-xr-x root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__pycache__/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__pycache__/__init__.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__pycache__/add_hydrogen.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__pycache__/altloc.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__pycache__/amide.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__pycache__/backbone.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__pycache__/chains.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__pycache__/chiral.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__pycache__/chiral_bck.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__pycache__/cistransbck.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__pycache__/clashes.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__pycache__/fixside.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__pycache__/getss.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__pycache__/inscodes.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__pycache__/ligands.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__pycache__/metals.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__pycache__/models.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__pycache__/mutateside.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__pycache__/rem_hydrogen.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__pycache__/sequences.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/__pycache__/water.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/add_hydrogen.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/altloc.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/amide.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/backbone.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/chains.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/chiral.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/chiral_bck.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/cistransbck.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/clashes.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/fixside.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/getss.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/inscodes.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/ligands.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/metals.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/models.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/mutateside.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/rem_hydrogen.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/sequences.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/commands/water.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/constants.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/biobb_structure_checking/dat/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/dat/ADT_prm.json -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/dat/CMIP_prm.json -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/dat/all_residues.in -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/dat/commands.hlp -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/dat/data_lib.json drwxr-xr-x root/root usr/lib/python3.10/site-packages/biobb_structure_checking/io/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/io/PDBIO_extended.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/io/__init__.py (EMPTY) drwxr-xr-x root/root usr/lib/python3.10/site-packages/biobb_structure_checking/io/__pycache__/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/io/__pycache__/PDBIO_extended.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/io/__pycache__/__init__.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/io/__pycache__/bare_builder.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/io/__pycache__/json_writer.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/io/__pycache__/mmb_server.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/io/__pycache__/param_input.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/io/bare_builder.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/io/json_writer.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/io/mmb_server.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/io/param_input.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/biobb_structure_checking/libs/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/libs/__init__.py (EMPTY) drwxr-xr-x root/root usr/lib/python3.10/site-packages/biobb_structure_checking/libs/__pycache__/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/libs/__pycache__/__init__.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/libs/__pycache__/data_lib_manager.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/libs/__pycache__/residue_lib_manager.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/libs/data_lib_manager.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/libs/residue_lib_manager.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/modeller_manager.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/biobb_structure_checking/modelling/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/modelling/__init__.py (EMPTY) drwxr-xr-x root/root usr/lib/python3.10/site-packages/biobb_structure_checking/modelling/__pycache__/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/modelling/__pycache__/__init__.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/modelling/__pycache__/chainsdata.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/modelling/__pycache__/modelsdata.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/modelling/__pycache__/residue_set.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/modelling/__pycache__/sequencedata.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/modelling/__pycache__/structuredata.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/modelling/__pycache__/utils.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/modelling/chainsdata.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/modelling/modelsdata.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/modelling/residue_set.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/modelling/sequencedata.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/modelling/structuredata.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/modelling/utils.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/mutation_manager.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/structure_checking.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/biobb_structure_checking/structure_manager.py