drwxr-xr-x	root/root	usr/
drwxr-xr-x	root/root	usr/include/
drwxr-xr-x	root/root	usr/include/Bpp/
drwxr-xr-x	root/root	usr/include/Bpp/Seq/
drwxr-xr-x	root/root	usr/include/Bpp/Seq/Alphabet/
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h
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-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/DNA.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/DefaultAlphabet.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/IntegerAlphabet.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/LexicalAlphabet.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h
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-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/ProteicAlphabetState.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/RNA.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/RNY.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/WordAlphabet.h
drwxr-xr-x	root/root	usr/include/Bpp/Seq/AlphabetIndex/
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AAChargeIndex.h
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-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AAMassIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AASEA1030Index.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AASEASup30Index.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h
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-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/BLOSUM50.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/CodonFromProteicAlphabetIndex1.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/CodonFromProteicAlphabetIndex2.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/KD_AAHydropathyIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/SimpleScore.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/UserAlphabetIndex1.h
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drwxr-xr-x	root/root	usr/include/Bpp/Seq/App/
-rw-r--r--	root/root	usr/include/Bpp/Seq/App/BppSequenceApplication.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/App/SequenceApplicationTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/CodonSiteTools.h
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drwxr-xr-x	root/root	usr/include/Bpp/Seq/Container/
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h
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-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/AlignmentData.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/CompressedVectorSiteContainer.h
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-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/PositionedNamedContainer.h
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-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/SequenceContainerIterator.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/SequenceContainerTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/SequenceData.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/SequencedValuesContainer.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/SiteContainer.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/SiteContainerExceptions.h
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-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/SiteContainerTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/VectorMappedContainer.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/VectorPositionedContainer.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/VectorSequenceContainer.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/VectorSiteContainer.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/CoreSequence.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/CoreSite.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/CoreSymbolList.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/DNAToRNA.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/DistanceMatrix.h
drwxr-xr-x	root/root	usr/include/Bpp/Seq/GeneticCode/
-rw-r--r--	root/root	usr/include/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/GeneticCode/CiliateNuclearGeneticCode.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/GeneticCode/GeneticCode.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/GeneticCode/StandardGeneticCode.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/IntSymbolList.h
drwxr-xr-x	root/root	usr/include/Bpp/Seq/Io/
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/AbstractIAlignment.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/AbstractISequence.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/AbstractOAlignment.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/AbstractOSequence.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/BppOAlignmentReaderFormat.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/BppOAlignmentWriterFormat.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/BppOAlphabetIndex1Format.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/BppOAlphabetIndex2Format.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/BppOSequenceReaderFormat.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/BppOSequenceWriterFormat.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/Clustal.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/Csv.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/Dcse.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/Fasta.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/FastaCsv.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/GenBank.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/ISequence.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/ISequenceStream.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/IoDistanceMatrix.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/IoDistanceMatrixFactory.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/IoSequence.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/IoSequenceFactory.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/IoSequenceStream.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/Mase.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/MaseTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/NexusIoSequence.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/NexusTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/OSequence.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/OSequenceStream.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/Pasta.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/PhredPhd.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/PhredPoly.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/Phylip.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/PhylipDistanceMatrixFormat.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/SequenceFileIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/Stockholm.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/StreamSequenceIterator.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/NucleicAcidsReplication.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/ProbabilisticSequence.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/ProbabilisticSite.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/ProbabilisticSymbolList.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Sequence.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SequenceExceptions.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SequenceIterator.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SequencePositionIterators.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SequenceTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SequenceWalker.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SequenceWithAnnotation.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SequenceWithAnnotationTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SequenceWithQuality.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SequenceWithQualityTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Site.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SiteExceptions.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SiteIterator.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SiteTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/StringSequenceTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SymbolList.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SymbolListTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Transliterator.h
drwxr-xr-x	root/root	usr/lib/
drwxr-xr-x	root/root	usr/lib/cmake/
drwxr-xr-x	root/root	usr/lib/cmake/bpp-seq/
-rw-r--r--	root/root	usr/lib/cmake/bpp-seq/bpp-seq-config-version.cmake
-rw-r--r--	root/root	usr/lib/cmake/bpp-seq/bpp-seq-config.cmake
-rw-r--r--	root/root	usr/lib/cmake/bpp-seq/bpp-seq-targets-release.cmake
-rw-r--r--	root/root	usr/lib/cmake/bpp-seq/bpp-seq-targets.cmake
lrwxrwxrwx	root/root	usr/lib/libbpp-seq.so -> libbpp-seq.so.14
lrwxrwxrwx	root/root	usr/lib/libbpp-seq.so.14 -> libbpp-seq.so.14.0.0
-rwxr-xr-x	root/root	usr/lib/libbpp-seq.so.14.0.0