drwxr-xr-x	root/root	usr/
drwxr-xr-x	root/root	usr/include/
drwxr-xr-x	root/root	usr/include/Bpp/
drwxr-xr-x	root/root	usr/include/Bpp/Seq/
drwxr-xr-x	root/root	usr/include/Bpp/Seq/Alphabet/
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/Alphabet.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/AlphabetExceptions.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/AlphabetNumericState.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/AlphabetState.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/AlphabetTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/BinaryAlphabet.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/DNA.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/DefaultAlphabet.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/IntegerAlphabet.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/LexicalAlphabet.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/NumericAlphabet.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/ProteicAlphabetState.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/RNA.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/RNY.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Alphabet/WordAlphabet.h
drwxr-xr-x	root/root	usr/include/Bpp/Seq/AlphabetIndex/
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AAChargeIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AAMassIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AASEA1030Index.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AASEASup30Index.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/BLOSUM50.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/SimpleScore.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/AlphabetIndex/UserAlphabetIndex1.h
drwxr-xr-x	root/root	usr/include/Bpp/Seq/App/
-rw-r--r--	root/root	usr/include/Bpp/Seq/App/SequenceApplicationTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/CodonSiteTools.h
drwxr-xr-x	root/root	usr/include/Bpp/Seq/Container/
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/CompressedVectorSiteContainer.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/MapSequenceContainer.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/SequenceContainer.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/SequenceContainerIterator.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/SequenceContainerTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/SiteContainer.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/SiteContainerExceptions.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/SiteContainerIterator.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/SiteContainerTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/VectorSequenceContainer.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Container/VectorSiteContainer.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/CoreSequence.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/CoreSite.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/DNAToRNA.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/DistanceMatrix.h
drwxr-xr-x	root/root	usr/include/Bpp/Seq/GeneticCode/
-rw-r--r--	root/root	usr/include/Bpp/Seq/GeneticCode/AscidianMitochondrialGeneticCode.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/GeneticCode/GeneticCode.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/GeneticCode/MoldMitochondrialGeneticCode.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/GeneticCode/StandardGeneticCode.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h
drwxr-xr-x	root/root	usr/include/Bpp/Seq/Io/
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/AbstractIAlignment.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/AbstractISequence.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/AbstractOAlignment.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/AbstractOSequence.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/BppOAlignmentReaderFormat.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/BppOAlignmentWriterFormat.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/BppOAlphabetIndex1Format.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/BppOAlphabetIndex2Format.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/BppOSequenceReaderFormat.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/BppOSequenceWriterFormat.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/Clustal.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/Dcse.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/Fasta.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/GenBank.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/ISequence.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/ISequenceStream.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/IoSequence.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/IoSequenceFactory.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/IoSequenceStream.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/Mase.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/MaseTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/NexusIoSequence.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/NexusTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/OSequence.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/OSequenceStream.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/PhredPhd.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/PhredPoly.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/Phylip.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/SequenceFileIndex.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/Stockholm.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Io/StreamSequenceIterator.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/NucleicAcidsReplication.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Sequence.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SequenceExceptions.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SequenceIterator.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SequencePositionIterators.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SequenceTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SequenceWalker.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SequenceWithAnnotation.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SequenceWithAnnotationTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SequenceWithQuality.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SequenceWithQualityTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Site.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SiteExceptions.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SiteIterator.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SiteTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/StringSequenceTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SymbolList.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/SymbolListTools.h
-rw-r--r--	root/root	usr/include/Bpp/Seq/Transliterator.h
drwxr-xr-x	root/root	usr/lib64/
drwxr-xr-x	root/root	usr/lib64/cmake/
drwxr-xr-x	root/root	usr/lib64/cmake/bpp-seq/
-rw-r--r--	root/root	usr/lib64/cmake/bpp-seq/bpp-seq-config-version.cmake
-rw-r--r--	root/root	usr/lib64/cmake/bpp-seq/bpp-seq-config.cmake
-rw-r--r--	root/root	usr/lib64/cmake/bpp-seq/bpp-seq-targets-release.cmake
-rw-r--r--	root/root	usr/lib64/cmake/bpp-seq/bpp-seq-targets.cmake
-rw-r--r--	root/root	usr/lib64/libbpp-seq.a
lrwxrwxrwx	root/root	usr/lib64/libbpp-seq.so -> libbpp-seq.so.12
lrwxrwxrwx	root/root	usr/lib64/libbpp-seq.so.12 -> libbpp-seq.so.12.0.0
-rwxr-xr-x	root/root	usr/lib64/libbpp-seq.so.12.0.0