# Description: Bio++ 1 Phyl Library
# URL: http://biopp.univ-montp2.fr/
# Maintainer: Petar Petrov, slackalaxy at gmail dot com
# Depends on: bpp1-seq

name=bpp1-phyl
version=1.9.0
release=1
source=(https://raw.githubusercontent.com/slackalaxy/sources/main/bpp-phyl-$version.tar.gz
	caps_TreeTemplateTools.patch)

build() {
	cd bpp-phyl-$version
	
	# build fails with gcc 12
	export CXX=g++-5
	
	# This is needed for vCAPS to find its libraries at runtime. Thanks Urachlay!
	LIBDIRPATH="-Wl,-rpath,/usr/lib/Bpp1"

	# CAPS wants TreeTemplateTools to be modified a bit...
	patch -p1 -i $SRC/caps_TreeTemplateTools.patch

	# Use custom install place, so libs can coexist with latest bpp
	export PATH="/usr/lib/Bpp1/:$PATH"
	sed -i "s:/lib/:/lib/Bpp1/:g" Phyl.spec

	mkdir -p build
	cd build
	cmake \
	-DCMAKE_CXX_FLAGS:STRING="$CFLAGS $LIBDIRPATH" \
	-DCMAKE_INSTALL_PREFIX=/usr \
	-DCMAKE_BUILD_TYPE=Release ..

	sed -i "s:/lib\b:/lib/Bpp1:g" Phyl/cmake_install.cmake
	sed -i "s:Bpp1/Bpp1:Bpp1:g" Phyl/cmake_install.cmake

	make
	make DESTDIR=$PKG install
	
	mkdir -p $PKG/etc/revdep.d
	echo "/usr/lib/Bpp1" > $PKG/etc/revdep.d/$name
}