drwxr-xr-x	root/root	etc/
drwxr-xr-x	root/root	etc/revdep.d/
-rw-r--r--	root/root	etc/revdep.d/bpp1-seq
drwxr-xr-x	root/root	usr/
drwxr-xr-x	root/root	usr/include/
drwxr-xr-x	root/root	usr/include/Seq/
-rw-r--r--	root/root	usr/include/Seq/AAChargeIndex.h
-rw-r--r--	root/root	usr/include/Seq/AAIndex1Entry.h
-rw-r--r--	root/root	usr/include/Seq/AAIndex2Entry.h
-rw-r--r--	root/root	usr/include/Seq/AbstractAlphabet.h
-rw-r--r--	root/root	usr/include/Seq/AbstractISequence.h
-rw-r--r--	root/root	usr/include/Seq/AbstractISequence2.h
-rw-r--r--	root/root	usr/include/Seq/AbstractOSequence.h
-rw-r--r--	root/root	usr/include/Seq/AbstractSequenceContainer.h
-rw-r--r--	root/root	usr/include/Seq/AlignedSequenceContainer.h
-rw-r--r--	root/root	usr/include/Seq/Alphabet.h
-rw-r--r--	root/root	usr/include/Seq/AlphabetExceptions.h
-rw-r--r--	root/root	usr/include/Seq/AlphabetIndex1.h
-rw-r--r--	root/root	usr/include/Seq/AlphabetIndex2.h
-rw-r--r--	root/root	usr/include/Seq/AlphabetState.h
-rw-r--r--	root/root	usr/include/Seq/AlphabetTools.h
-rw-r--r--	root/root	usr/include/Seq/BLOSUM50.h
-rw-r--r--	root/root	usr/include/Seq/Clustal.h
-rw-r--r--	root/root	usr/include/Seq/CodonAlphabet.h
-rw-r--r--	root/root	usr/include/Seq/CodonSiteTools.h
-rw-r--r--	root/root	usr/include/Seq/CompressedVectorSiteContainer.h
-rw-r--r--	root/root	usr/include/Seq/DCSE.h
-rw-r--r--	root/root	usr/include/Seq/DNA.h
-rw-r--r--	root/root	usr/include/Seq/DNAToRNA.h
-rw-r--r--	root/root	usr/include/Seq/DefaultAlphabet.h
-rw-r--r--	root/root	usr/include/Seq/DefaultNucleotideScore.h
-rw-r--r--	root/root	usr/include/Seq/DistanceMatrix.h
-rw-r--r--	root/root	usr/include/Seq/EchinodermMitochondrialCodonAlphabet.h
-rw-r--r--	root/root	usr/include/Seq/EchinodermMitochondrialGeneticCode.h
-rw-r--r--	root/root	usr/include/Seq/Fasta.h
-rw-r--r--	root/root	usr/include/Seq/GenBank.h
-rw-r--r--	root/root	usr/include/Seq/GeneticCode.h
-rw-r--r--	root/root	usr/include/Seq/GranthamAAChemicalDistance.h
-rw-r--r--	root/root	usr/include/Seq/GranthamAAPolarityIndex.h
-rw-r--r--	root/root	usr/include/Seq/GranthamAAVolumeIndex.h
-rw-r--r--	root/root	usr/include/Seq/IOSequence.h
-rw-r--r--	root/root	usr/include/Seq/IOSequenceFactory.h
-rw-r--r--	root/root	usr/include/Seq/IOSequenceStream.h
-rw-r--r--	root/root	usr/include/Seq/ISequence.h
-rw-r--r--	root/root	usr/include/Seq/ISequenceStream.h
-rw-r--r--	root/root	usr/include/Seq/InvertebrateMitochondrialCodonAlphabet.h
-rw-r--r--	root/root	usr/include/Seq/InvertebrateMitochondrialGeneticCode.h
-rw-r--r--	root/root	usr/include/Seq/KleinAANetChargeIndex.h
-rw-r--r--	root/root	usr/include/Seq/LetterAlphabet.h
-rw-r--r--	root/root	usr/include/Seq/MapSequenceContainer.h
-rw-r--r--	root/root	usr/include/Seq/Mase.h
-rw-r--r--	root/root	usr/include/Seq/MaseTools.h
-rw-r--r--	root/root	usr/include/Seq/MiyataAAChemicalDistance.h
-rw-r--r--	root/root	usr/include/Seq/NexusIOSequence.h
-rw-r--r--	root/root	usr/include/Seq/NexusTools.h
-rw-r--r--	root/root	usr/include/Seq/NucleicAcidsReplication.h
-rw-r--r--	root/root	usr/include/Seq/NucleicAlphabet.h
-rw-r--r--	root/root	usr/include/Seq/NucleicAlphabetState.h
-rw-r--r--	root/root	usr/include/Seq/OSequence.h
-rw-r--r--	root/root	usr/include/Seq/OSequenceStream.h
-rw-r--r--	root/root	usr/include/Seq/OrderedSequenceContainer.h
-rw-r--r--	root/root	usr/include/Seq/PhredPhd.h
-rw-r--r--	root/root	usr/include/Seq/PhredPoly.h
-rw-r--r--	root/root	usr/include/Seq/Phylip.h
-rw-r--r--	root/root	usr/include/Seq/ProteicAlphabet.h
-rw-r--r--	root/root	usr/include/Seq/ProteicAlphabetState.h
-rw-r--r--	root/root	usr/include/Seq/RNA.h
-rw-r--r--	root/root	usr/include/Seq/Sequence.h
-rw-r--r--	root/root	usr/include/Seq/SequenceApplicationTools.h
-rw-r--r--	root/root	usr/include/Seq/SequenceContainer.h
-rw-r--r--	root/root	usr/include/Seq/SequenceContainerExceptions.h
-rw-r--r--	root/root	usr/include/Seq/SequenceContainerTools.h
-rw-r--r--	root/root	usr/include/Seq/SequenceExceptions.h
-rw-r--r--	root/root	usr/include/Seq/SequencePositionIterators.h
-rw-r--r--	root/root	usr/include/Seq/SequenceTools.h
-rw-r--r--	root/root	usr/include/Seq/SequenceWithQuality.h
-rw-r--r--	root/root	usr/include/Seq/SimpleIndexDistance.h
-rw-r--r--	root/root	usr/include/Seq/SimpleScore.h
-rw-r--r--	root/root	usr/include/Seq/Site.h
-rw-r--r--	root/root	usr/include/Seq/SiteContainer.h
-rw-r--r--	root/root	usr/include/Seq/SiteContainerExceptions.h
-rw-r--r--	root/root	usr/include/Seq/SiteContainerTools.h
-rw-r--r--	root/root	usr/include/Seq/SiteExceptions.h
-rw-r--r--	root/root	usr/include/Seq/SiteIterator.h
-rw-r--r--	root/root	usr/include/Seq/SiteTools.h
-rw-r--r--	root/root	usr/include/Seq/StandardCodonAlphabet.h
-rw-r--r--	root/root	usr/include/Seq/StandardGeneticCode.h
-rw-r--r--	root/root	usr/include/Seq/StringSequenceTools.h
-rw-r--r--	root/root	usr/include/Seq/SymbolList.h
-rw-r--r--	root/root	usr/include/Seq/SymbolListTools.h
-rw-r--r--	root/root	usr/include/Seq/Translator.h
-rw-r--r--	root/root	usr/include/Seq/VectorSequenceContainer.h
-rw-r--r--	root/root	usr/include/Seq/VectorSiteContainer.h
-rw-r--r--	root/root	usr/include/Seq/VertebrateMitochondrialCodonAlphabet.h
-rw-r--r--	root/root	usr/include/Seq/VertebrateMitochondrialGeneticCode.h
-rw-r--r--	root/root	usr/include/Seq/WordAlphabet.h
-rw-r--r--	root/root	usr/include/Seq/aadistances
-rw-r--r--	root/root	usr/include/Seq/alphabets
-rw-r--r--	root/root	usr/include/Seq/containers
-rw-r--r--	root/root	usr/include/Seq/geneticcodes
-rw-r--r--	root/root	usr/include/Seq/ioseq
-rw-r--r--	root/root	usr/include/Seq/sequences
drwxr-xr-x	root/root	usr/lib/
drwxr-xr-x	root/root	usr/lib/Bpp1/
-rw-r--r--	root/root	usr/lib/Bpp1/libbpp-seq.a
lrwxrwxrwx	root/root	usr/lib/Bpp1/libbpp-seq.so -> libbpp-seq.so.9
lrwxrwxrwx	root/root	usr/lib/Bpp1/libbpp-seq.so.9 -> libbpp-seq.so.9.0.0
-rwxr-xr-x	root/root	usr/lib/Bpp1/libbpp-seq.so.9.0.0