# Description: A reference-guided assembler for RNA-Seq experiments # URL: https://github.com/cole-trapnell-lab/cufflinks # Maintainer: Petar Petrov, slackalaxy at gmail dot com # Depends on: samtools0 name=cufflinks version=2.2.1 release=2 source=(http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/cufflinks-2.2.1.Linux_x86_64.tar.gz) build() { cd cufflinks-${version}.Linux_x86_64 install -D -m 755 cuffcompare $PKG/usr/bin/cuffcompare install -D -m 755 cuffdiff $PKG/usr/bin/cuffdiff install -D -m 755 cufflinks $PKG/usr/bin/cufflinks install -D -m 755 cuffmerge $PKG/usr/bin/cuffmerge install -D -m 755 cuffnorm $PKG/usr/bin/cuffnorm install -D -m 755 cuffquant $PKG/usr/bin/cuffquant install -D -m 755 gffread $PKG/usr/bin/gffread install -D -m 755 gtf_to_sam $PKG/usr/bin/gtf_to_sam }