# Description: A reference-guided assembler for RNA-Seq experiments
# URL: https://github.com/cole-trapnell-lab/cufflinks
# Maintainer: Petar Petrov, slackalaxy at gmail dot com
# Depends on: samtools0

name=cufflinks
version=2.2.1
release=2
source=(http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/cufflinks-2.2.1.Linux_x86_64.tar.gz)

build() {
	cd cufflinks-${version}.Linux_x86_64
	
	install -D -m 755 cuffcompare $PKG/usr/bin/cuffcompare
	install -D -m 755 cuffdiff $PKG/usr/bin/cuffdiff
	install -D -m 755 cufflinks $PKG/usr/bin/cufflinks
	install -D -m 755 cuffmerge $PKG/usr/bin/cuffmerge
	install -D -m 755 cuffnorm $PKG/usr/bin/cuffnorm
	install -D -m 755 cuffquant $PKG/usr/bin/cuffquant
	install -D -m 755 gffread $PKG/usr/bin/gffread
	install -D -m 755 gtf_to_sam $PKG/usr/bin/gtf_to_sam
}