drwxr-xr-x root/root usr/ drwxr-xr-x root/root usr/bin/ -rwxr-xr-x root/root usr/bin/dendropy-format -rwxr-xr-x root/root usr/bin/sumlabels.py -rwxr-xr-x root/root usr/bin/sumtrees.py drwxr-xr-x root/root usr/lib/ drwxr-xr-x root/root usr/lib/python3.10/ drwxr-xr-x root/root usr/lib/python3.10/site-packages/ drwxr-xr-x root/root usr/lib/python3.10/site-packages/DendroPy-4.6.1-py3.10.egg-info/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/DendroPy-4.6.1-py3.10.egg-info/PKG-INFO -rw-r--r-- root/root usr/lib/python3.10/site-packages/DendroPy-4.6.1-py3.10.egg-info/SOURCES.txt -rw-r--r-- root/root usr/lib/python3.10/site-packages/DendroPy-4.6.1-py3.10.egg-info/dependency_links.txt -rw-r--r-- root/root usr/lib/python3.10/site-packages/DendroPy-4.6.1-py3.10.egg-info/requires.txt -rw-r--r-- root/root usr/lib/python3.10/site-packages/DendroPy-4.6.1-py3.10.egg-info/top_level.txt -rw-r--r-- root/root usr/lib/python3.10/site-packages/DendroPy-4.6.1-py3.10.egg-info/zip-safe drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/__init__.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/__main__.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/__pycache__/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/__pycache__/__init__.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/__pycache__/__main__.cpython-310.pyc drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/calculate/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/__init__.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/calculate/__pycache__/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/__pycache__/__init__.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/__pycache__/combinatorics.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/__pycache__/mathfn.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/__pycache__/phylogeneticdistance.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/__pycache__/popgenstat.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/__pycache__/probability.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/__pycache__/profiledistance.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/__pycache__/statistics.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/__pycache__/treecompare.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/__pycache__/treemeasure.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/__pycache__/treescore.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/__pycache__/treesum.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/combinatorics.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/mathfn.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/phylogeneticdistance.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/popgenstat.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/probability.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/profiledistance.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/statistics.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/treecompare.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/treemeasure.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/treescore.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/calculate/treesum.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/dataio/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/__init__.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/dataio/__pycache__/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/__pycache__/__init__.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/__pycache__/fastareader.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/__pycache__/fastawriter.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/__pycache__/ioservice.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/__pycache__/multiphylipreader.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/__pycache__/newick.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/__pycache__/newickreader.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/__pycache__/newickwriter.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/__pycache__/newickyielder.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/__pycache__/nexmlreader.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/__pycache__/nexmlwriter.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/__pycache__/nexmlyielder.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/__pycache__/nexusprocessing.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/__pycache__/nexusreader.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/__pycache__/nexuswriter.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/__pycache__/nexusyielder.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/__pycache__/phylipreader.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/__pycache__/phylipwriter.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/__pycache__/tokenizer.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/__pycache__/xmlprocessing.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/fastareader.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/fastawriter.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/ioservice.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/multiphylipreader.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/newick.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/newickreader.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/newickwriter.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/newickyielder.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/nexmlreader.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/nexmlwriter.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/nexmlyielder.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/nexusprocessing.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/nexusreader.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/nexuswriter.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/nexusyielder.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/phylipreader.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/phylipwriter.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/tokenizer.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/dataio/xmlprocessing.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/datamodel/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/__init__.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/datamodel/__pycache__/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/__pycache__/__init__.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/__pycache__/basemodel.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/__pycache__/charmatrixmodel.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/__pycache__/charstatemodel.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/__pycache__/datasetmodel.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/__pycache__/taxonmodel.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/__pycache__/treecollectionmodel.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/basemodel.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/charmatrixmodel.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/charstatemodel.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/datasetmodel.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/taxonmodel.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/treecollectionmodel.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/datamodel/treemodel/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/treemodel/__init__.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/datamodel/treemodel/__pycache__/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/treemodel/__pycache__/__init__.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/treemodel/__pycache__/_bipartition.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/treemodel/__pycache__/_edge.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/treemodel/__pycache__/_node.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/treemodel/__pycache__/_tree.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/treemodel/_bipartition.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/treemodel/_edge.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/treemodel/_node.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/datamodel/treemodel/_tree.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/interop/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/__init__.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/interop/__pycache__/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/__pycache__/__init__.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/__pycache__/ape.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/__pycache__/biopython.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/__pycache__/entrez.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/__pycache__/ete.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/__pycache__/gbif.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/__pycache__/genbank.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/__pycache__/itol.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/__pycache__/muscle.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/__pycache__/paup.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/__pycache__/raxml.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/__pycache__/rspr.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/__pycache__/rstats.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/__pycache__/seqgen.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/ape.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/biopython.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/entrez.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/ete.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/gbif.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/genbank.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/itol.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/muscle.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/paup.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/raxml.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/rspr.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/rstats.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/interop/seqgen.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/legacy/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/__init__.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/legacy/__pycache__/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/__pycache__/__init__.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/__pycache__/coalescent.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/__pycache__/continuous.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/__pycache__/ncbi.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/__pycache__/popgensim.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/__pycache__/popgenstat.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/__pycache__/reconcile.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/__pycache__/seqmodel.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/__pycache__/seqsim.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/__pycache__/treecalc.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/__pycache__/treemanip.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/__pycache__/treesim.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/__pycache__/treesplit.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/__pycache__/treesum.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/coalescent.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/continuous.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/ncbi.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/popgensim.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/popgenstat.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/reconcile.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/seqmodel.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/seqsim.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/treecalc.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/treemanip.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/treesim.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/treesplit.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/legacy/treesum.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/mathlib/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/mathlib/__init__.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/mathlib/__pycache__/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/mathlib/__pycache__/__init__.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/mathlib/__pycache__/mathfn.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/mathlib/__pycache__/probability.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/mathlib/__pycache__/statistics.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/mathlib/mathfn.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/mathlib/probability.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/mathlib/statistics.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/model/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/model/__init__.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/model/__pycache__/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/model/__pycache__/__init__.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/model/__pycache__/birthdeath.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/model/__pycache__/coalescent.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/model/__pycache__/continuous.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/model/__pycache__/discrete.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/model/__pycache__/multispeciescoalescent.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/model/__pycache__/parsimony.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/model/__pycache__/protractedspeciation.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/model/__pycache__/reconcile.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/model/__pycache__/treeshape.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/model/birthdeath.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/model/coalescent.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/model/continuous.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/model/discrete.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/model/multispeciescoalescent.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/model/parsimony.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/model/protractedspeciation.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/model/reconcile.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/model/treeshape.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/simulate/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/simulate/__init__.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/simulate/__pycache__/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/simulate/__pycache__/__init__.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/simulate/__pycache__/charsim.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/simulate/__pycache__/popgensim.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/simulate/__pycache__/treesim.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/simulate/charsim.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/simulate/popgensim.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/simulate/treesim.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/utility/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/__init__.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/utility/__pycache__/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/__pycache__/__init__.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/__pycache__/bibtex.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/__pycache__/bitprocessing.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/__pycache__/cli.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/__pycache__/constants.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/__pycache__/container.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/__pycache__/debug.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/__pycache__/deprecate.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/__pycache__/error.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/__pycache__/filesys.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/__pycache__/messaging.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/__pycache__/metavar.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/__pycache__/processio.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/__pycache__/terminal.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/__pycache__/textprocessing.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/__pycache__/timeprocessing.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/__pycache__/urlio.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/__pycache__/vcsinfo.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/bibtex.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/bitprocessing.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/cli.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/constants.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/container.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/debug.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/deprecate.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/error.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/filesys.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/utility/libexec/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/libexec/__init__.py drwxr-xr-x root/root usr/lib/python3.10/site-packages/dendropy/utility/libexec/__pycache__/ -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/libexec/__pycache__/__init__.cpython-310.pyc -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/messaging.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/metavar.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/processio.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/terminal.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/textprocessing.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/timeprocessing.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/urlio.py -rw-r--r-- root/root usr/lib/python3.10/site-packages/dendropy/utility/vcsinfo.py