drwxr-xr-x	root/root	usr/
drwxr-xr-x	root/root	usr/lib/
drwxr-xr-x	root/root	usr/lib/emboss/
drwxr-xr-x	root/root	usr/lib/emboss/bin/
-rwxr-xr-x	root/root	usr/lib/emboss/bin/allversusall
-rwxr-xr-x	root/root	usr/lib/emboss/bin/cathparse
-rwxr-xr-x	root/root	usr/lib/emboss/bin/contacts
-rwxr-xr-x	root/root	usr/lib/emboss/bin/domainalign
-rwxr-xr-x	root/root	usr/lib/emboss/bin/domainer
-rwxr-xr-x	root/root	usr/lib/emboss/bin/domainnr
-rwxr-xr-x	root/root	usr/lib/emboss/bin/domainrep
-rwxr-xr-x	root/root	usr/lib/emboss/bin/domainreso
-rwxr-xr-x	root/root	usr/lib/emboss/bin/domainseqs
-rwxr-xr-x	root/root	usr/lib/emboss/bin/domainsse
-rwxr-xr-x	root/root	usr/lib/emboss/bin/echlorop
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ehmmalign
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ehmmbuild
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ehmmcalibrate
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ehmmconvert
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ehmmemit
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ehmmfetch
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ehmmindex
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ehmmpfam
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ehmmsearch
-rwxr-xr-x	root/root	usr/lib/emboss/bin/eiprscan
-rwxr-xr-x	root/root	usr/lib/emboss/bin/elipop
-rwxr-xr-x	root/root	usr/lib/emboss/bin/emast
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ememe
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ememetext
-rwxr-xr-x	root/root	usr/lib/emboss/bin/emnu
-rwxr-xr-x	root/root	usr/lib/emboss/bin/enetnglyc
-rwxr-xr-x	root/root	usr/lib/emboss/bin/enetoglyc
-rwxr-xr-x	root/root	usr/lib/emboss/bin/enetphos
-rwxr-xr-x	root/root	usr/lib/emboss/bin/eomega
-rwxr-xr-x	root/root	usr/lib/emboss/bin/eomegapp
-rwxr-xr-x	root/root	usr/lib/emboss/bin/eomegaps
-rwxr-xr-x	root/root	usr/lib/emboss/bin/eomegash
-rwxr-xr-x	root/root	usr/lib/emboss/bin/eomegasp
-rwxr-xr-x	root/root	usr/lib/emboss/bin/eprop
-rwxr-xr-x	root/root	usr/lib/emboss/bin/esignalp
-rwxr-xr-x	root/root	usr/lib/emboss/bin/esim4
-rwxr-xr-x	root/root	usr/lib/emboss/bin/etmhmm
-rwxr-xr-x	root/root	usr/lib/emboss/bin/eyinoyang
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fclique
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fconsense
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fcontml
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fcontrast
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fdiscboot
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fdnacomp
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fdnadist
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fdnainvar
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fdnaml
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fdnamlk
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fdnamove
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fdnapars
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fdnapenny
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fdollop
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fdolmove
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fdolpenny
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fdrawgram
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fdrawtree
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ffactor
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ffitch
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ffreqboot
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fgendist
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fkitsch
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fmix
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fmove
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fneighbor
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fpars
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fpenny
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fproml
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fpromlk
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fprotdist
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fprotpars
-rwxr-xr-x	root/root	usr/lib/emboss/bin/frestboot
-rwxr-xr-x	root/root	usr/lib/emboss/bin/frestdist
-rwxr-xr-x	root/root	usr/lib/emboss/bin/frestml
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fretree
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fseqboot
-rwxr-xr-x	root/root	usr/lib/emboss/bin/fseqbootall
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ftreedist
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ftreedistpair
-rwxr-xr-x	root/root	usr/lib/emboss/bin/hetparse
-rwxr-xr-x	root/root	usr/lib/emboss/bin/interface
-rwxr-xr-x	root/root	usr/lib/emboss/bin/libgen
-rwxr-xr-x	root/root	usr/lib/emboss/bin/matgen3d
-rwxr-xr-x	root/root	usr/lib/emboss/bin/mse
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ovrnaalifold
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ovrnaalifoldpf
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ovrnacofold
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ovrnacofoldconc
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ovrnacofoldpf
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ovrnadistance
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ovrnaduplex
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ovrnaeval
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ovrnaevalpair
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ovrnafold
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ovrnafoldpf
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ovrnaheat
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ovrnainverse
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ovrnalfold
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ovrnaplot
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ovrnasubopt
-rwxr-xr-x	root/root	usr/lib/emboss/bin/pdbparse
-rwxr-xr-x	root/root	usr/lib/emboss/bin/pdbplus
-rwxr-xr-x	root/root	usr/lib/emboss/bin/pdbtosp
-rwxr-xr-x	root/root	usr/lib/emboss/bin/rocon
-rwxr-xr-x	root/root	usr/lib/emboss/bin/rocplot
-rwxr-xr-x	root/root	usr/lib/emboss/bin/scopparse
-rwxr-xr-x	root/root	usr/lib/emboss/bin/seqalign
-rwxr-xr-x	root/root	usr/lib/emboss/bin/seqfraggle
-rwxr-xr-x	root/root	usr/lib/emboss/bin/seqnr
-rwxr-xr-x	root/root	usr/lib/emboss/bin/seqsearch
-rwxr-xr-x	root/root	usr/lib/emboss/bin/seqsort
-rwxr-xr-x	root/root	usr/lib/emboss/bin/seqwords
-rwxr-xr-x	root/root	usr/lib/emboss/bin/siggen
-rwxr-xr-x	root/root	usr/lib/emboss/bin/siggenlig
-rwxr-xr-x	root/root	usr/lib/emboss/bin/sigscan
-rwxr-xr-x	root/root	usr/lib/emboss/bin/sigscanlig
-rwxr-xr-x	root/root	usr/lib/emboss/bin/sites
-rwxr-xr-x	root/root	usr/lib/emboss/bin/ssematch
-rwxr-xr-x	root/root	usr/lib/emboss/bin/topo
-rw-r--r--	root/root	usr/lib/emboss/libckit.a
lrwxrwxrwx	root/root	usr/lib/emboss/libckit.so -> libckit.so.0.1.0
lrwxrwxrwx	root/root	usr/lib/emboss/libckit.so.0 -> libckit.so.0.1.0
-rwxr-xr-x	root/root	usr/lib/emboss/libckit.so.0.1.0
-rw-r--r--	root/root	usr/lib/emboss/liboviennarna.a
lrwxrwxrwx	root/root	usr/lib/emboss/liboviennarna.so -> liboviennarna.so.1.0.7
lrwxrwxrwx	root/root	usr/lib/emboss/liboviennarna.so.1 -> liboviennarna.so.1.0.7
-rwxr-xr-x	root/root	usr/lib/emboss/liboviennarna.so.1.0.7
drwxr-xr-x	root/root	usr/share/
drwxr-xr-x	root/root	usr/share/EMBOSS/
drwxr-xr-x	root/root	usr/share/EMBOSS/acd/
-rw-r--r--	root/root	usr/share/EMBOSS/acd/allversusall.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/cathparse.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/contacts.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/domainalign.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/domainer.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/domainnr.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/domainrep.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/domainreso.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/domainseqs.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/domainsse.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/echlorop.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ehmmalign.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ehmmbuild.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ehmmcalibrate.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ehmmconvert.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ehmmemit.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ehmmfetch.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ehmmindex.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ehmmpfam.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ehmmsearch.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/eiprscan.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/elipop.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/emast.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ememe.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ememetext.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/emnu.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/enetnglyc.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/enetoglyc.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/enetphos.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/eomega.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/eomegapp.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/eomegaps.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/eomegash.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/eomegasp.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/eprop.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/esignalp.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/esim4.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/etmhmm.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/eyinoyang.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fclique.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fconsense.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fcontml.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fcontrast.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fdiscboot.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fdnacomp.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fdnadist.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fdnainvar.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fdnaml.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fdnamlk.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fdnamove.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fdnapars.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fdnapenny.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fdollop.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fdolmove.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fdolpenny.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fdrawgram.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fdrawtree.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ffactor.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ffitch.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ffreqboot.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fgendist.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fkitsch.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fmix.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fmove.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fneighbor.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fpars.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/fpenny.acd
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-rw-r--r--	root/root	usr/share/EMBOSS/acd/hetparse.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/interface.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/libgen.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/matgen3d.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/mse.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ovrnaalifold.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ovrnaalifoldpf.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ovrnacofold.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ovrnacofoldconc.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ovrnacofoldpf.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ovrnadistance.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ovrnaduplex.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ovrnaeval.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ovrnaevalpair.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ovrnafold.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ovrnafoldpf.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ovrnaheat.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ovrnainverse.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ovrnalfold.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ovrnaplot.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ovrnasubopt.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/pdbparse.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/pdbplus.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/pdbtosp.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/rocon.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/rocplot.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/scopparse.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/seqalign.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/seqfraggle.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/seqnr.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/seqsearch.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/seqsort.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/seqwords.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/siggen.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/siggenlig.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/sigscan.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/sigscanlig.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/sites.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/ssematch.acd
-rw-r--r--	root/root	usr/share/EMBOSS/acd/topo.acd
drwxr-xr-x	root/root	usr/share/PHYLIPNEW/
drwxr-xr-x	root/root	usr/share/PHYLIPNEW/data/
-rw-r--r--	root/root	usr/share/PHYLIPNEW/data/font1
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-rw-r--r--	root/root	usr/share/PHYLIPNEW/data/font6