# Description: EMBOSS associated software
# URL: http://emboss.sourceforge.net/embassy/
# Maintainer: Petar Petrov, slackalaxy at gmail dot com
# Depends on: emboss xorg-libxaw

name=embassy
version=6.6.0
release=3
source=(https://sourceforge.net/projects/sboppetrov/files/EMBOSS/CBSTOOLS-1.0.0.650.tar.gz \
	https://sourceforge.net/projects/sboppetrov/files/EMBOSS/CLUSTALOMEGA-1.1.0.tar.gz \
	https://sourceforge.net/projects/sboppetrov/files/EMBOSS/DOMAINATRIX-0.1.650.tar.gz \
	https://sourceforge.net/projects/sboppetrov/files/EMBOSS/DOMALIGN-0.1.650.tar.gz \
	https://sourceforge.net/projects/sboppetrov/files/EMBOSS/DOMSEARCH-0.1.650.tar.gz \
	https://sourceforge.net/projects/sboppetrov/files/EMBOSS/EMNU-1.05.650.tar.gz \
	https://sourceforge.net/projects/sboppetrov/files/EMBOSS/ESIM4-1.0.0.650.tar.gz \
	https://sourceforge.net/projects/sboppetrov/files/EMBOSS/HMMER-2.3.2.650.tar.gz \
	https://sourceforge.net/projects/sboppetrov/files/EMBOSS/IPRSCAN-4.3.1.650.tar.gz \
	https://sourceforge.net/projects/sboppetrov/files/EMBOSS/MEME-4.7.650.tar.gz \
	https://sourceforge.net/projects/sboppetrov/files/EMBOSS/MSE-3.0.0.650.tar.gz \
	https://sourceforge.net/projects/sboppetrov/files/EMBOSS/MYEMBOSS-6.5.1.tar.gz \
	https://sourceforge.net/projects/sboppetrov/files/EMBOSS/MYEMBOSSDEMO-6.5.0.tar.gz \
	https://sourceforge.net/projects/sboppetrov/files/EMBOSS/PHYLIPNEW-3.69.650.tar.gz \
	https://sourceforge.net/projects/sboppetrov/files/EMBOSS/SIGNATURE-0.1.650.tar.gz \
	https://sourceforge.net/projects/sboppetrov/files/EMBOSS/STRUCTURE-0.1.650.tar.gz \
	https://sourceforge.net/projects/sboppetrov/files/EMBOSS/TOPO-2.0.650.tar.gz \
	https://sourceforge.net/projects/sboppetrov/files/EMBOSS/VIENNA-1.7.2.650.tar.gz)

build() {

	# EMBASSY components and their versions
embassy=(CBSTOOLS-1.0.0.650
	CLUSTALOMEGA-1.1.0
	DOMAINATRIX-0.1.650
	DOMALIGN-0.1.650
	DOMSEARCH-0.1.650
	EMNU-1.05.650
	ESIM4-1.0.0.650
	HMMER-2.3.2.650
	IPRSCAN-4.3.1.650
	MEME-4.7.650
	MSE-3.0.0.650
	MYEMBOSS-6.5.1
	MYEMBOSSDEMO-6.5.0
	SIGNATURE-0.1.650
	STRUCTURE-0.1.650
	TOPO-2.0.650)
	
	LIBDIRPATH="-Wl,-rpath,/usr/lib/emboss"
	
	for component in ${embassy[@]} ; do
	  cd $SRC/$component
	  CFLAGS="$CFLAGS $LIBDIRPATH" \
	  CXXFLAGS="$CXXFLAGS $LIBDIRPATH" \
	  LDFLAGS="-L/usr/lib/emboss" \
	  ./configure --prefix=/usr \
	  --libdir=/usr/lib/emboss \
	  --bindir=/usr/lib/emboss/bin
	  make
	  make install DESTDIR=$PKG
	  cd ..
	done
	
	# These two need some extra flags...
	cd $SRC/VIENNA-1.7.2.650
	LDFLAGS="-L/usr/lib/emboss" \
	CFLAGS="$CFLAGS -std=gnu89 $LIBDIRPATH" \
	CXXFLAGS="$CXXFLAGS -std=gnu89 $LIBDIRPATH" \
	./configure --prefix=/usr \
	--libdir=/usr/lib/emboss \
	--bindir=/usr/lib/emboss/bin
	make
	make install DESTDIR=$PKG
	
	cd $SRC/PHYLIPNEW-3.69.650
	LDFLAGS="-L/usr/lib/emboss" \
	CFLAGS="$CFLAGS -fcommon $LIBDIRPATH" \
	CXXFLAGS="$CXXFLAGS -fcommon $LIBDIRPATH" \
	./configure --prefix=/usr \
	--libdir=/usr/lib/emboss \
	--bindir=/usr/lib/emboss/bin
	make
	make install DESTDIR=$PKG
	
	rm -rf $PKG/usr/lib/emboss/*.la	
	rm -rf $PKG/usr/share/EMBOSS/doc
}