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usr/lib/emboss/libajaxdb.a lrwxrwxrwx root/root usr/lib/emboss/libajaxdb.so -> libajaxdb.so.6.0.5 lrwxrwxrwx root/root usr/lib/emboss/libajaxdb.so.6 -> libajaxdb.so.6.0.5 -rwxr-xr-x root/root usr/lib/emboss/libajaxdb.so.6.0.5 -rw-r--r-- root/root usr/lib/emboss/libajaxg.a lrwxrwxrwx root/root usr/lib/emboss/libajaxg.so -> libajaxg.so.6.0.5 lrwxrwxrwx root/root usr/lib/emboss/libajaxg.so.6 -> libajaxg.so.6.0.5 -rwxr-xr-x root/root usr/lib/emboss/libajaxg.so.6.0.5 -rw-r--r-- root/root usr/lib/emboss/libeexpat.a lrwxrwxrwx root/root usr/lib/emboss/libeexpat.so -> libeexpat.so.1.1.0 lrwxrwxrwx root/root usr/lib/emboss/libeexpat.so.1 -> libeexpat.so.1.1.0 -rwxr-xr-x root/root usr/lib/emboss/libeexpat.so.1.1.0 -rw-r--r-- root/root usr/lib/emboss/libensembl.a lrwxrwxrwx root/root usr/lib/emboss/libensembl.so -> libensembl.so.6.0.5 lrwxrwxrwx root/root usr/lib/emboss/libensembl.so.6 -> libensembl.so.6.0.5 -rwxr-xr-x root/root usr/lib/emboss/libensembl.so.6.0.5 -rw-r--r-- root/root usr/lib/emboss/libepcre.a lrwxrwxrwx root/root usr/lib/emboss/libepcre.so -> libepcre.so.7.0.9 lrwxrwxrwx root/root usr/lib/emboss/libepcre.so.7 -> libepcre.so.7.0.9 -rwxr-xr-x root/root usr/lib/emboss/libepcre.so.7.0.9 -rw-r--r-- root/root usr/lib/emboss/libeplplot.a lrwxrwxrwx root/root usr/lib/emboss/libeplplot.so -> libeplplot.so.3.2.7 lrwxrwxrwx root/root usr/lib/emboss/libeplplot.so.3 -> libeplplot.so.3.2.7 -rwxr-xr-x root/root usr/lib/emboss/libeplplot.so.3.2.7 -rw-r--r-- root/root usr/lib/emboss/libezlib.a lrwxrwxrwx root/root usr/lib/emboss/libezlib.so -> libezlib.so.1.1.0 lrwxrwxrwx root/root usr/lib/emboss/libezlib.so.1 -> libezlib.so.1.1.0 -rwxr-xr-x root/root usr/lib/emboss/libezlib.so.1.1.0 -rw-r--r-- root/root usr/lib/emboss/libnucleus.a lrwxrwxrwx root/root usr/lib/emboss/libnucleus.so -> libnucleus.so.6.0.5 lrwxrwxrwx root/root usr/lib/emboss/libnucleus.so.6 -> libnucleus.so.6.0.5 -rwxr-xr-x root/root usr/lib/emboss/libnucleus.so.6.0.5 drwxr-xr-x root/root usr/share/ 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