# Description: The European Molecular Biology Open Software Suite
# URL: https://emboss.sourceforge.net/
# Maintainer: Petar Petrov, slackalaxy at gmail dot com
# Depends on: jdk8-bin libgd mariadb postgresql

name=emboss
version=6.6.0
release=1
source=(ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-$version.tar.gz
	$name.desktop $name.png)

build() {
	cd EMBOSS-$version

	# Do not try to update on runtime
	sed -i "/embossupdate/d" Makefile.am Makefile.in
	
	# Some of the files have the same names of files from other
	# packages. Let's install in a custom location.
	./configure --prefix=/usr \
		--bindir=/usr/lib/$name/bin \
		--libdir=/usr/lib/$name \
		--includedir=/usr/include/$name \
		--with-x
	
	make
	make install DESTDIR=$PKG
	
	mkdir -p $PKG/usr/share/{applications,pixmaps}
	cp $SRC/$name.desktop $PKG/usr/share/applications
	cp $SRC/$name.png $PKG/usr/share/pixmaps
	
	# Make jEmboss find the binaries
	sed -i "s|/usr/bin/|/usr/lib/emboss/bin/|g" $PKG/usr/share/EMBOSS/jemboss/resources/jemboss.properties
	sed -i "s|/usr/bin:|/usr/lib/emboss/bin:/usr/bin:|g" $PKG/usr/share/EMBOSS/jemboss/resources/jemboss.properties
	
	mkdir -p $PKG/usr/bin
	cd $PKG/usr/bin
	mv $PKG/usr/lib/$name/bin/runJemboss.sh .
	
	# Remove the docs? I actually want to have them.
	# rm -rf $PKG/usr/share/EMBOSS/doc
	
	# remove la files
	rm $PKG/usr/lib/$name/*.la
	
	# remove static libs
	rm $PKG/usr/lib/$name/*.a
	
	find $PKG/ -name "README" -delete
}