# Description: Integrative Genomics Viewer
# URL: https://software.broadinstitute.org/software/igv/home
# Maintainer: Petar Petrov, slackalaxy at gmail dot com
# Depends on: adoptium11-jdk

name=igv
version=2.17.4
release=1
source=(https://data.broadinstitute.org/igv/projects/downloads/${version%.*}/IGV_${version}.zip
	$name.desktop $name.png)

build() {
	cd IGV_${version}

	mkdir -p $PKG/usr/lib/$name
	cp -a * $PKG/usr/lib/$name

	# Find JDK 11
	sed -i 's:${prefix}/jdk-11:/usr/lib/jdk/adoptium11-jdk/:g' $PKG/usr/lib/$name/{$name.command,$name.sh,${name}_hidpi.sh,igvtools,igvtools_gui,igvtools_gui.command,igvtools_gui_hidpi}
	sed -i "s:echo echo:echo:" $PKG/usr/lib/$name/{$name.command,$name.sh,${name}_hidpi.sh,igvtools,igvtools_gui,igvtools_gui.command,igvtools_gui_hidpi}
	sed -i "s:bundled:AdoptOpen:" $PKG/usr/lib/$name/{$name.command,$name.sh,${name}_hidpi.sh,igvtools,igvtools_gui,igvtools_gui.command,igvtools_gui_hidpi}

	mkdir -p $PKG/usr/share/{applications,pixmaps}
	cp $SRC/$name.png $PKG/usr/share/pixmaps/$name.png
	cp $SRC/$name.desktop $PKG/usr/share/applications
	
	#install -D -m755 $name.sh $PKG/usr/bin/$name
	#sed -i 's:prefix=`dirname $(readlink $0 || echo $0)`:prefix=/usr/lib/igv:' $PKG/usr/bin/$name
	mkdir -p $PKG/usr/bin
	cd $PKG/usr/bin
	ln -s ../lib/$name/$name.sh $name	
}