drwxr-xr-x	root/root	usr/
drwxr-xr-x	root/root	usr/bin/
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-rwxr-xr-x	root/root	usr/bin/convert_trace
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-rwxr-xr-x	root/root	usr/bin/cram_size
-rwxr-xr-x	root/root	usr/bin/extract_fastq
-rwxr-xr-x	root/root	usr/bin/extract_qual
-rwxr-xr-x	root/root	usr/bin/extract_seq
-rwxr-xr-x	root/root	usr/bin/get_comment
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-rwxr-xr-x	root/root	usr/bin/srf_extract_hash
-rwxr-xr-x	root/root	usr/bin/srf_extract_linear
-rwxr-xr-x	root/root	usr/bin/srf_filter
-rwxr-xr-x	root/root	usr/bin/srf_index_hash
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-rwxr-xr-x	root/root	usr/bin/srf_list
-rwxr-xr-x	root/root	usr/bin/trace_dump
-rwxr-xr-x	root/root	usr/bin/ztr_dump
drwxr-xr-x	root/root	usr/include/
drwxr-xr-x	root/root	usr/include/htscodecs/
-rw-r--r--	root/root	usr/include/htscodecs/arith_dynamic.h
-rw-r--r--	root/root	usr/include/htscodecs/fqzcomp_qual.h
-rw-r--r--	root/root	usr/include/htscodecs/htscodecs.h
-rw-r--r--	root/root	usr/include/htscodecs/pack.h
-rw-r--r--	root/root	usr/include/htscodecs/rANS_static.h
-rw-r--r--	root/root	usr/include/htscodecs/rANS_static4x16.h
-rw-r--r--	root/root	usr/include/htscodecs/rle.h
-rw-r--r--	root/root	usr/include/htscodecs/tokenise_name3.h
-rw-r--r--	root/root	usr/include/htscodecs/varint.h
drwxr-xr-x	root/root	usr/include/io_lib/
-rw-r--r--	root/root	usr/include/io_lib/Read.h
-rw-r--r--	root/root	usr/include/io_lib/abi.h
-rw-r--r--	root/root	usr/include/io_lib/alf.h
-rw-r--r--	root/root	usr/include/io_lib/array.h
-rw-r--r--	root/root	usr/include/io_lib/bam.h
-rw-r--r--	root/root	usr/include/io_lib/bgzip.h
-rw-r--r--	root/root	usr/include/io_lib/binning.h
-rw-r--r--	root/root	usr/include/io_lib/compress.h
-rw-r--r--	root/root	usr/include/io_lib/compression.h
-rw-r--r--	root/root	usr/include/io_lib/cram.h
-rw-r--r--	root/root	usr/include/io_lib/cram_bambam.h
-rw-r--r--	root/root	usr/include/io_lib/cram_codecs.h
-rw-r--r--	root/root	usr/include/io_lib/cram_decode.h
-rw-r--r--	root/root	usr/include/io_lib/cram_encode.h
-rw-r--r--	root/root	usr/include/io_lib/cram_index.h
-rw-r--r--	root/root	usr/include/io_lib/cram_io.h
-rw-r--r--	root/root	usr/include/io_lib/cram_stats.h
-rw-r--r--	root/root	usr/include/io_lib/cram_structs.h
-rw-r--r--	root/root	usr/include/io_lib/deflate_interlaced.h
-rw-r--r--	root/root	usr/include/io_lib/dstring.h
-rw-r--r--	root/root	usr/include/io_lib/error.h
-rw-r--r--	root/root	usr/include/io_lib/expFileIO.h
-rw-r--r--	root/root	usr/include/io_lib/fpoint.h
-rw-r--r--	root/root	usr/include/io_lib/hash_table.h
-rw-r--r--	root/root	usr/include/io_lib/jenkins_lookup3.h
-rw-r--r--	root/root	usr/include/io_lib/mFILE.h
-rw-r--r--	root/root	usr/include/io_lib/mach-io.h
-rw-r--r--	root/root	usr/include/io_lib/md5.h
-rw-r--r--	root/root	usr/include/io_lib/misc.h
-rw-r--r--	root/root	usr/include/io_lib/open_trace_file.h
-rw-r--r--	root/root	usr/include/io_lib/os.h
-rw-r--r--	root/root	usr/include/io_lib/plain.h
-rw-r--r--	root/root	usr/include/io_lib/pooled_alloc.h
-rw-r--r--	root/root	usr/include/io_lib/sam_header.h
-rw-r--r--	root/root	usr/include/io_lib/scf.h
-rw-r--r--	root/root	usr/include/io_lib/scf_extras.h
-rw-r--r--	root/root	usr/include/io_lib/scram.h
-rw-r--r--	root/root	usr/include/io_lib/seqIOABI.h
-rw-r--r--	root/root	usr/include/io_lib/sff.h
-rw-r--r--	root/root	usr/include/io_lib/srf.h
-rw-r--r--	root/root	usr/include/io_lib/stdio_hack.h
-rw-r--r--	root/root	usr/include/io_lib/string_alloc.h
-rw-r--r--	root/root	usr/include/io_lib/tar_format.h
-rw-r--r--	root/root	usr/include/io_lib/thread_pool.h
-rw-r--r--	root/root	usr/include/io_lib/traceType.h
-rw-r--r--	root/root	usr/include/io_lib/translate.h
-rw-r--r--	root/root	usr/include/io_lib/version.h
-rw-r--r--	root/root	usr/include/io_lib/vlen.h
-rw-r--r--	root/root	usr/include/io_lib/xalloc.h
-rw-r--r--	root/root	usr/include/io_lib/zfio.h
-rw-r--r--	root/root	usr/include/io_lib/ztr.h
drwxr-xr-x	root/root	usr/lib/
-rw-r--r--	root/root	usr/lib/libhtscodecs.a
-rwxr-xr-x	root/root	usr/lib/libhtscodecs.la
-rw-r--r--	root/root	usr/lib/libstaden-read.a
-rwxr-xr-x	root/root	usr/lib/libstaden-read.la
lrwxrwxrwx	root/root	usr/lib/libstaden-read.so -> libstaden-read.so.14.1.3
lrwxrwxrwx	root/root	usr/lib/libstaden-read.so.14 -> libstaden-read.so.14.1.3
-rwxr-xr-x	root/root	usr/lib/libstaden-read.so.14.1.3
drwxr-xr-x	root/root	usr/share/
drwxr-xr-x	root/root	usr/share/man/
drwxr-xr-x	root/root	usr/share/man/man1/
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-rw-r--r--	root/root	usr/share/man/man1/srf2fasta.1.gz
-rw-r--r--	root/root	usr/share/man/man1/srf2fastq.1.gz
-rw-r--r--	root/root	usr/share/man/man1/srf_index_hash.1.gz
-rw-r--r--	root/root	usr/share/man/man1/srf_info.1.gz
-rw-r--r--	root/root	usr/share/man/man1/srf_list.1.gz
drwxr-xr-x	root/root	usr/share/man/man3/
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-rw-r--r--	root/root	usr/share/man/man3/exp2read.3.gz
-rw-r--r--	root/root	usr/share/man/man3/fread_reading.3.gz
-rw-r--r--	root/root	usr/share/man/man3/fread_scf.3.gz
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-rw-r--r--	root/root	usr/share/man/man3/read2exp.3.gz
-rw-r--r--	root/root	usr/share/man/man3/read2scf.3.gz
-rw-r--r--	root/root	usr/share/man/man3/read_allocate.3.gz
-rw-r--r--	root/root	usr/share/man/man3/read_deallocate.3.gz
-rw-r--r--	root/root	usr/share/man/man3/read_reading.3.gz
-rw-r--r--	root/root	usr/share/man/man3/read_scf.3.gz
-rw-r--r--	root/root	usr/share/man/man3/read_scf_header.3.gz
-rw-r--r--	root/root	usr/share/man/man3/scf2read.3.gz
-rw-r--r--	root/root	usr/share/man/man3/write_reading.3.gz
-rw-r--r--	root/root	usr/share/man/man3/write_scf.3.gz
-rw-r--r--	root/root	usr/share/man/man3/write_scf_header.3.gz
drwxr-xr-x	root/root	usr/share/man/man4/
-rw-r--r--	root/root	usr/share/man/man4/Read.4.gz