# Description: Motif-based sequence analysis tools
# URL: https://meme-suite.org/
# Maintainer: Petar Petrov, slackalaxy at gmail dot com
# Depends on: libxslt meme-db-gomo meme-db-motif meme-db-tgene openmpi p5-html-template p5-json

name=meme-suite
version=5.5.5
release=1
source=(https://meme-suite.org/meme-software/$version/meme-$version.tar.gz)

build() {
	cd meme-$version
	
	# change, or it will complain about bad substitution
	sed -i "s:/bin/sh:/bin/bash:" configure
	
	# Change name from "meme" to "meme-suite"
	sed -i "s:PACKAGE_NAME='meme':PACKAGE_NAME='meme-suite':" configure

	# Do not append the package version to folder names
	find . -name "Makefile.*" -exec \
	sed -i 's:${PACKAGE_NAME}-${PACKAGE_VERSION}:${PACKAGE_NAME}:g' {} \;

	# Sometimes the brackets are not curly
	find . -name "Makefile.*" -exec \
	sed -i 's:$(PACKAGE_NAME)-${PACKAGE_VERSION}:$(PACKAGE_NAME):g' {} \;

	# Documentation can go to another docdir, but let's leave it as it is...
	# Documentation is useful and I want to have it in the package
	#sed -i 's:${datadir}/${PACKAGE_NAME}:${docdir}:g' doc/Makefile.*

	# Make empty folders for the databases
	mkdir -p $PKG/var/lib/$name/{fasta_databases,gomo_databases,motif_databases,tgene_databases}
	
	./configure --prefix=/usr \
	--with-url="http://meme-suite.org" \
	--datarootdir=/usr/share \
	--libexecdir=/usr/lib/$name \
	--localstatedir=/var \
	--with-db=/var/lib/$name \
	--with-temp=/var/tmp

	make CFLAGS="$CFLAGS -std=gnu89"
	make install DESTDIR=$PKG
}