drwxr-xr-x	root/root	usr/
drwxr-xr-x	root/root	usr/bin/
-rwxr-xr-x	root/root	usr/bin/add_dHdSTm
-rwxr-xr-x	root/root	usr/bin/add_dHdSTm2
-rwxr-xr-x	root/root	usr/bin/auxgen
-rwxr-xr-x	root/root	usr/bin/boxplot_ng
-rwxr-xr-x	root/root	usr/bin/ct2bp
-rwxr-xr-x	root/root	usr/bin/ct_boxplot_ng
-rwxr-xr-x	root/root	usr/bin/ct_compare
-rwxr-xr-x	root/root	usr/bin/distance
-rwxr-xr-x	root/root	usr/bin/efn
-rwxr-xr-x	root/root	usr/bin/efn2
-rwxr-xr-x	root/root	usr/bin/filter-sort
-rwxr-xr-x	root/root	usr/bin/h-num
-rwxr-xr-x	root/root	usr/bin/h_num
-rwxr-xr-x	root/root	usr/bin/mfold
-rwxr-xr-x	root/root	usr/bin/mfold_datdir
-rwxr-xr-x	root/root	usr/bin/mfold_quik
-rwxr-xr-x	root/root	usr/bin/myps2img.bash
lrwxrwxrwx	root/root	usr/bin/myps2jpg.bash -> myps2img.bash
lrwxrwxrwx	root/root	usr/bin/myps2pdf.bash -> myps2img.bash
lrwxrwxrwx	root/root	usr/bin/myps2png.bash -> myps2img.bash
-rwxr-xr-x	root/root	usr/bin/nafold
-rwxr-xr-x	root/root	usr/bin/newtemp
-rwxr-xr-x	root/root	usr/bin/overlay_boxplot_ng
-rwxr-xr-x	root/root	usr/bin/quikfold
-rwxr-xr-x	root/root	usr/bin/reformat-seq.sh
-rwxr-xr-x	root/root	usr/bin/sav2p_num
-rwxr-xr-x	root/root	usr/bin/sav2plot
-rwxr-xr-x	root/root	usr/bin/scorer
-rwxr-xr-x	root/root	usr/bin/sir_graph
-rwxr-xr-x	root/root	usr/bin/ss_count
drwxr-xr-x	root/root	usr/share/
drwxr-xr-x	root/root	usr/share/mfold/
-rw-r--r--	root/root	usr/share/mfold/Flower.gif
-rw-r--r--	root/root	usr/share/mfold/asint1x2.dat
-rw-r--r--	root/root	usr/share/mfold/asint1x2.dg
-rw-r--r--	root/root	usr/share/mfold/asint1x2.dgd
-rw-r--r--	root/root	usr/share/mfold/asint1x2.dh
-rw-r--r--	root/root	usr/share/mfold/asint1x2.dhd
-rw-r--r--	root/root	usr/share/mfold/asint2x3.dg
-rw-r--r--	root/root	usr/share/mfold/asint2x3.dgd
-rw-r--r--	root/root	usr/share/mfold/asint2x3.dh
-rw-r--r--	root/root	usr/share/mfold/asint2x3.dhd
-rw-r--r--	root/root	usr/share/mfold/back.gif
-rw-r--r--	root/root	usr/share/mfold/boxplot-3.0.col
-rw-r--r--	root/root	usr/share/mfold/boxplot.col
-rw-r--r--	root/root	usr/share/mfold/coaxial.dat
-rw-r--r--	root/root	usr/share/mfold/coaxstack.dat
-rw-r--r--	root/root	usr/share/mfold/ct_boxplot.col
-rw-r--r--	root/root	usr/share/mfold/dangle.dat
-rw-r--r--	root/root	usr/share/mfold/dangle.dg
-rw-r--r--	root/root	usr/share/mfold/dangle.dgd
-rw-r--r--	root/root	usr/share/mfold/dangle.dh
-rw-r--r--	root/root	usr/share/mfold/dangle.dhd
-rw-r--r--	root/root	usr/share/mfold/ddG.gif
-rw-r--r--	root/root	usr/share/mfold/end-break.gif
-rw-r--r--	root/root	usr/share/mfold/end2.gif
-rw-r--r--	root/root	usr/share/mfold/form1-doc.html
-rw-r--r--	root/root	usr/share/mfold/formats.html
-rw-r--r--	root/root	usr/share/mfold/green.gif
-rw-r--r--	root/root	usr/share/mfold/home.gif
-rw-r--r--	root/root	usr/share/mfold/int11.dat
-rw-r--r--	root/root	usr/share/mfold/int21.dat
-rw-r--r--	root/root	usr/share/mfold/int22.dat
-rw-r--r--	root/root	usr/share/mfold/l_blue.gif
-rw-r--r--	root/root	usr/share/mfold/l_brown.gif
-rw-r--r--	root/root	usr/share/mfold/l_cyan.gif
-rw-r--r--	root/root	usr/share/mfold/l_green.gif
-rw-r--r--	root/root	usr/share/mfold/l_grey.gif
-rw-r--r--	root/root	usr/share/mfold/l_purple.gif
-rw-r--r--	root/root	usr/share/mfold/l_red.gif
-rw-r--r--	root/root	usr/share/mfold/l_yellow.gif
-rw-r--r--	root/root	usr/share/mfold/loop.dat
-rw-r--r--	root/root	usr/share/mfold/loop.dg
-rw-r--r--	root/root	usr/share/mfold/loop.dgd
-rw-r--r--	root/root	usr/share/mfold/loop.dh
-rw-r--r--	root/root	usr/share/mfold/loop.dhd
-rw-r--r--	root/root	usr/share/mfold/mail.gif
-rw-r--r--	root/root	usr/share/mfold/mfold-server-credit-sm.gif
-rw-r--r--	root/root	usr/share/mfold/mfold-server-credit.gif
-rw-r--r--	root/root	usr/share/mfold/mfold5.gif
-rw-r--r--	root/root	usr/share/mfold/miscloop.dat
-rw-r--r--	root/root	usr/share/mfold/miscloop.dg
-rw-r--r--	root/root	usr/share/mfold/miscloop.dgd
-rw-r--r--	root/root	usr/share/mfold/miscloop.dh
-rw-r--r--	root/root	usr/share/mfold/miscloop.dhd
-rw-r--r--	root/root	usr/share/mfold/overlay_boxplot.col
-rw-r--r--	root/root	usr/share/mfold/rna.gif
-rw-r--r--	root/root	usr/share/mfold/shield_t.gif
-rw-r--r--	root/root	usr/share/mfold/sint2.dat
-rw-r--r--	root/root	usr/share/mfold/sint2.dg
-rw-r--r--	root/root	usr/share/mfold/sint2.dgd
-rw-r--r--	root/root	usr/share/mfold/sint2.dh
-rw-r--r--	root/root	usr/share/mfold/sint2.dhd
-rw-r--r--	root/root	usr/share/mfold/sint4.dat
-rw-r--r--	root/root	usr/share/mfold/sint4.dg
-rw-r--r--	root/root	usr/share/mfold/sint4.dgd
-rw-r--r--	root/root	usr/share/mfold/sint4.dh
-rw-r--r--	root/root	usr/share/mfold/sint4.dhd
-rw-r--r--	root/root	usr/share/mfold/sint6.dg
-rw-r--r--	root/root	usr/share/mfold/sint6.dgd
-rw-r--r--	root/root	usr/share/mfold/sint6.dh
-rw-r--r--	root/root	usr/share/mfold/sint6.dhd
-rw-r--r--	root/root	usr/share/mfold/sir_graph.1.col
-rw-r--r--	root/root	usr/share/mfold/sir_graph.col
-rw-r--r--	root/root	usr/share/mfold/split_ct.awk
-rw-r--r--	root/root	usr/share/mfold/stack.dat
-rw-r--r--	root/root	usr/share/mfold/stack.dg
-rw-r--r--	root/root	usr/share/mfold/stack.dgd
-rw-r--r--	root/root	usr/share/mfold/stack.dh
-rw-r--r--	root/root	usr/share/mfold/stack.dhd
-rw-r--r--	root/root	usr/share/mfold/tloop.dat
-rw-r--r--	root/root	usr/share/mfold/tloop.dg
-rw-r--r--	root/root	usr/share/mfold/tloop.dgd
-rw-r--r--	root/root	usr/share/mfold/tloop.dh
-rw-r--r--	root/root	usr/share/mfold/tloop.dhd
-rw-r--r--	root/root	usr/share/mfold/triloop.dat
-rw-r--r--	root/root	usr/share/mfold/triloop.dg
-rw-r--r--	root/root	usr/share/mfold/triloop.dgd
-rw-r--r--	root/root	usr/share/mfold/triloop.dh
-rw-r--r--	root/root	usr/share/mfold/triloop.dhd
-rw-r--r--	root/root	usr/share/mfold/tstack.dat
-rw-r--r--	root/root	usr/share/mfold/tstackcoax.dat
-rw-r--r--	root/root	usr/share/mfold/tstackh.dat
-rw-r--r--	root/root	usr/share/mfold/tstackh.dg
-rw-r--r--	root/root	usr/share/mfold/tstackh.dgd
-rw-r--r--	root/root	usr/share/mfold/tstackh.dh
-rw-r--r--	root/root	usr/share/mfold/tstackh.dhd
-rw-r--r--	root/root	usr/share/mfold/tstacki.dat
-rw-r--r--	root/root	usr/share/mfold/tstacki.dg
-rw-r--r--	root/root	usr/share/mfold/tstacki.dgd
-rw-r--r--	root/root	usr/share/mfold/tstacki.dh
-rw-r--r--	root/root	usr/share/mfold/tstacki.dhd
-rw-r--r--	root/root	usr/share/mfold/tstackm.dat