# Description: Bayesian inference of phylogeny
# URL: https://github.com/NBISweden/MrBayes
# Maintainer: Petar Petrov, slackalaxy at gmail dot com
# Depends on:

name=mrbayes
version=3.2.7a
release=1
source=(https://github.com/NBISweden/MrBayes/archive/v${version}/MrBayes-${version}.tar.gz)

build() {
	cd MrBayes-$version

	./configure --prefix=/usr \
	--with-beagle=no

	# Fix the examples path
	sed -i "s:/share:/share/$name:" examples/Makefile
	sed -i 's:examples/${PACKAGE}:examples:g' examples/Makefile

	# GCC warns -mmpx is no longer supported. Also, use our CFLAGS
	sed -i "s/-mmpx//g" Makefile src/Makefile
	sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile

	make CFLAGS="$CFLAGS"
	make install DESTDIR=$PKG

	# symlink the executable
	cd $PKG/usr/bin
	ln -s mb $name
	
	# Keep the manual
	cp $PKG/usr/share/doc/$name/*.pdf $PKG/usr/share/$name
	cp $PKG/usr/share/doc/$name/*.nex $PKG/usr/share/$name/examples
	rm -rf $PKG/usr/share/doc
}