# Description: Perl modules for biology
# URL: https://metacpan.org/release/BioPerl
# Maintainer: Petar Petrov, slackalaxy at gmail dot com
# Depends on: p5-algorithm-munkres p5-array-compare p5-bio-phylo p5-cgi p5-clone p5-convert-binary-c p5-data-stag p5-dbd-mysql p5-dbd-pg p5-dbd-sqlite p5-error p5-gd p5-graph p5-graphviz p5-html-tableextract p5-http-message p5-libxml-perl p5-postscript p5-set-scalar p5-soap-lite p5-sort-naturally p5-spreadsheet-parseexcel p5-svg-graph p5-test-most p5-test-simple p5-xml-dom-xpath p5-xml-sax-writer p5-yaml
# Optional: p5-bio-asn1-entrezgene p5-bio-cluster p5-bio-variation

name=p5-bioperl
version=1.6.924
release=2
source=(http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-${version}.tar.gz
	BioPerl-1.006924-RT106756.patch)

build() {
	cd BioPerl-$version

	patch -p1 -i $SRC/BioPerl-1.006924-RT106756.patch
	perl Build.PL --install_base /usr \
        --install_path lib=/usr/lib/perl5/site_perl/5.36
	./Build test
	./Build --install_base $PKG/usr \
	--install_path lib=$PKG/usr/lib/perl5/site_perl/5.36 install

	find "$PKG" -depth \
		-type f \( -name .packlist -o -name \*.bs -o -name perllocal.pod \) -delete , \
		-type f -name autosplit.ix \( -exec grep -q '^[[:space:]]*package' {} \; -o -delete \) , \
		-type d -empty -exec rmdir {} +

	mv $PKG/usr/man $PKG/usr/share
}