# Description:	Perl modules for biology
# URL:		https://metacpan.org/dist/BioPerl
# Maintainer:	Petar Petrov, slackalaxy at gmail dot com
# Depends on:	p5-data-stag p5-error p5-graph p5-http-message p5-io-stringy p5-ipc-run p5-list-moreutils p5-set-scalar p5-test-most p5-test-requiresinternet p5-xml-dom p5-xml-libxml p5-xml-sax-writer p5-xml-twig p5-xml-writer p5-yaml
# Optional:	p5-bio-db-ace p5-bio-db-embl p5-bio-db-ncbihelper p5-bio-db-swissprot

name=p5-bioperl
version=1.7.8
release=2
source=(https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/BioPerl-${version}.tar.gz)

build() {
	cd BioPerl-$version

	# PERL_MM_USE_DEFAULT=1 \
	perl Makefile.PL
	make OPTIMIZE="$CFLAGS" DESTDIR="$PKG" install

	find "$PKG" -depth \
		-type f \( -name .packlist -o -name \*.bs -o -name perllocal.pod \) -delete , \
		-type f -name autosplit.ix \( -exec grep -q '^[[:space:]]*package' {} \; -o -delete \) , \
		-type d -empty -exec rmdir {} +
	
	# perl -MConfig -e 'print $Config{installsitelib}' asks the installed Perl
	# where site modules go. Today it prints /usr/lib/perl5/site_perl/5.40,
	# and after an upgrade it prints the new path.
	cd $PKG$(perl -MConfig -e 'print $Config{installsitelib}')/Bio/
	ln -s ../BioPerl.pm Perl.pm
}