# Description: Phylogenetic estimation using Maximum Likelihood
# URL: https://github.com/stephaneguindon/phyml/
# Maintainer: Petar Petrov, slackalaxy at gmail dot com
# Depends on: openmpi

name=phyml
version=3.3.20220408
release=2
source=(https://github.com/stephaneguindon/phyml/archive/v${version}/$name-$version.tar.gz)

build() {
	cd $name-$version
	
	./autogen.sh
	./configure --prefix=/usr \
	--enable-mpi

	# Use our CFLAGS
	sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile

	CFLAGS="$CFLAGS -fPIC" \
	CXXFLAGS="$CXXFLAGS -fPIC" \
	make
	make install DESTDIR=$PKG
	mv $PKG/usr/bin/phyml $PKG/usr/bin/phyml-mpi
	
	./autogen.sh
	./configure --prefix=/usr \
	--enable-phyml

	# Use our CFLAGS
	sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile

	CFLAGS="$CFLAGS -fPIC" \
	CXXFLAGS="$CXXFLAGS -fPIC" \
	make
	make install DESTDIR=$PKG
	
	./autogen.sh
	./configure --prefix=/usr \
	--enable-phyrex

	# Use our CFLAGS
	sed -i "/^CFLAGS/s/=/+=/" Makefile src/Makefile

	CFLAGS="$CFLAGS -fPIC" \
	CXXFLAGS="$CXXFLAGS -fPIC" \
	make
	make install DESTDIR=$PKG
}