# Description: Multiple sequence alignment and phylogeny GUI
# URL: http://doua.prabi.fr/software/seaview
# Maintainer: Petar Petrov, slackalaxy at gmail dot com
# Depends on: gblocks fltk pdflib-lite xorg-libsm xorg-libxcursor muscle clustalo treerecs

name=seaview
version=5.0.5
release=1
source=(ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/$name/archive/${name}_${version}.tar.gz
	$name.desktop)

build() {
	cd $name
	
	# Use our CFLAGS
	sed -i "/^CFLAGS/s/=/+=/" Makefile
	
	# Enable PDF output. If you do not want it, comment out the next four
	# lines. Then you do not need to install PDFlib-Lite.
	sed -i "8 c PDF_INC = /usr/include" Makefile
	sed -i "9 c PDF_LIB = /usr/lib" Makefile
	sed -i "s:#PDF_PS_FLAGS:PDF_PS_FLAGS:" Makefile
	sed -i "s:#LPDF:LPDF:" Makefile

	# Point to the correct documentation path and phyml executable name
	sed -i "s:#HELPFILE:HELPFILE:" Makefile
	sed -i "s:/share/doc/seaview:/share/$name/:" Makefile
	sed -i "s:#PHYMLNAME:PHYMLNAME:" Makefile

	CFLAGS="$CFLAGS -fcommon" \
	CXXFLAGS="$CXXFLAGS -fcommon" \
	make

	install -D -m755 $name $PKG/usr/bin/$name
	install -D -m644 $name.1 $PKG/usr/share/man/man1/$name.1
	
	# I _do_ want to have this documentation
	mkdir -p $PKG/usr/share/$name
	cp -a $name.html $PKG/usr/share/$name
	
	mkdir -p $PKG/usr/share/{applications,pixmaps}
	cp $SRC/$name.desktop $PKG/usr/share/applications
	cp $name.xpm $PKG/usr/share/pixmaps
}