# Description: Multiple sequence alignment and phylogeny GUI
# URL: https://doua.prabi.fr/software/seaview
# Maintainer: Petar Petrov, slackalaxy at gmail dot com
# Depends on: clustalo fltk gblocks kalign mafft muscle muscle5 prank t_coffee xorg-libxcursor

name=seaview
version=5.1
release=5
source=(ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_${version}.tar.gz
	$name.desktop 
	seaview-scheme.patch 
	seaview-msa-methods.patch 
	seaview-interrupt.patch)

build() {
	cd $name
	patch -p0 -i $SRC/seaview-scheme.patch
	patch -p1 -i $SRC/seaview-msa-methods.patch
	patch -p1 -i $SRC/seaview-interrupt.patch

	# Point to the correct documentation path and phyml executable name
	sed -i "s:#HELPFILE:HELPFILE:" Makefile
	sed -i "s:/share/doc/seaview:/share/$name/:" Makefile
	sed -i "s:#PHYMLNAME:PHYMLNAME:" Makefile

	CFLAGS="$CFLAGS -fcommon" \
	CXXFLAGS="$CXXFLAGS -fcommon" \
	make -j1

	install -D -m755 $name $PKG/usr/bin/$name
	install -D -m644 $name.1 $PKG/usr/share/man/man1/$name.1
	
	# I _do_ want to have this documentation
	mkdir -p $PKG/usr/share/$name
	cp -a $name.html $PKG/usr/share/$name
	
	mkdir -p $PKG/usr/share/{applications,pixmaps}
	cp $SRC/$name.desktop $PKG/usr/share/applications
	cp $name.svg $PKG/usr/share/pixmaps
}