drwxr-xr-x	root/root	etc/
drwxr-xr-x	root/root	etc/revdep.d/
-rw-r--r--	root/root	etc/revdep.d/ugene
drwxr-xr-x	root/root	usr/
drwxr-xr-x	root/root	usr/bin/
lrwxrwxrwx	root/root	usr/bin/ugene -> ../lib/ugene/ugene
drwxr-xr-x	root/root	usr/lib/
drwxr-xr-x	root/root	usr/lib/ugene/
-rw-r--r--	root/root	usr/lib/ugene/LICENSE.3rd_party.txt
-rw-r--r--	root/root	usr/lib/ugene/LICENSE.txt
drwxr-xr-x	root/root	usr/lib/ugene/data/
-rw-r--r--	root/root	usr/lib/ugene/data/DBXRefRegistry.txt
drwxr-xr-x	root/root	usr/lib/ugene/data/adapters/
-rw-r--r--	root/root	usr/lib/ugene/data/adapters/adapters.fasta
drwxr-xr-x	root/root	usr/lib/ugene/data/adapters/illumina/
-rw-r--r--	root/root	usr/lib/ugene/data/adapters/illumina/NexteraPE-PE.fa
-rw-r--r--	root/root	usr/lib/ugene/data/adapters/illumina/TruSeq2-PE.fa
-rw-r--r--	root/root	usr/lib/ugene/data/adapters/illumina/TruSeq2-SE.fa
-rw-r--r--	root/root	usr/lib/ugene/data/adapters/illumina/TruSeq3-PE-2.fa
-rw-r--r--	root/root	usr/lib/ugene/data/adapters/illumina/TruSeq3-PE.fa
-rw-r--r--	root/root	usr/lib/ugene/data/adapters/illumina/TruSeq3-SE.fa
drwxr-xr-x	root/root	usr/lib/ugene/data/back_translation/
drwxr-xr-x	root/root	usr/lib/ugene/data/back_translation/Bacteria/
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Bacteria/Arthrobacter_aurescens_TC1.cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Bacteria/Bacillus_subtilis.cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Bacteria/Escherichia_coli.cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Bacteria/Haemophilus_influenzae.cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Bacteria/Helicobacter_pylori.cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Bacteria/Listeria_monocytogenes.cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Bacteria/Neisseria_meningitidis.cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Bacteria/Salmonella_typhimurium_LT2.cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Bacteria/Streptomyces_coelicolor_A3(2).cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Bacteria/Sulfolobus_solfataricus_P2.cut
drwxr-xr-x	root/root	usr/lib/ugene/data/back_translation/Invertebrates/
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Invertebrates/Apis_mellifera_(honey_bee).cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Invertebrates/Caenorhabditis_elegans.cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Invertebrates/Drosophila_melanogaster_(fruit_fly).cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Invertebrates/Plasmodium_falciparum_(malaria_parasite_P._falciparum).cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Invertebrates/mitochondrion_Caenorhabditis_elegans.cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Invertebrates/mitochondrion_Drosophila_melanogaster_(fruit_fly).cut
drwxr-xr-x	root/root	usr/lib/ugene/data/back_translation/Mammalia/
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Mammalia/Bos_taurus_(cow).cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Mammalia/Canis_familiaris_(dog).cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Mammalia/Sus_scrofa_(pig).cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Mammalia/mitochondrion_Bos_taurus_(cow).cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Mammalia/mitochondrion_Sus_scrofa_(pig).cut
drwxr-xr-x	root/root	usr/lib/ugene/data/back_translation/Plants/
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Plants/Arabidopsis_thaliana_(thale_cress).cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Plants/Oryza_sativa.cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Plants/Zea_mays.cut
drwxr-xr-x	root/root	usr/lib/ugene/data/back_translation/Primates/
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Primates/Homo_sapiens_(human).cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Primates/Pan_troglodytes_(chimpanzee).cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Primates/mitochondrion_Homo_sapiens_(human).cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Primates/mitochondrion_Pan_troglodytes_(chimpanzee).cut
drwxr-xr-x	root/root	usr/lib/ugene/data/back_translation/Rodents/
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Rodents/Mus_musculus_(house_mouse).cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Rodents/Rattus_norvegicus_(Norway_rat).cut
drwxr-xr-x	root/root	usr/lib/ugene/data/back_translation/Vertebrates/
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Vertebrates/Gallus_gallus_(chicken).cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Vertebrates/Takifugu_rubripes_(Fugu_rubripes).cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Vertebrates/Xenopus_laevis_(African_clawed_frog).cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Vertebrates/mitochondrion_Gallus_gallus_(chicken).cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Vertebrates/mitochondrion_Takifugu_rubripes_(Fugu_rubripes).cut
drwxr-xr-x	root/root	usr/lib/ugene/data/back_translation/Viruses/
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Viruses/Human_immunodeficiency_virus_1_(HIV-1).cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Viruses/Influenza_A_virus.cut
drwxr-xr-x	root/root	usr/lib/ugene/data/back_translation/Yeast/
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/Yeast/Saccharomyces_cerevisiae_(baker's_yeast).cut
-rw-r--r--	root/root	usr/lib/ugene/data/back_translation/tables.xml
drwxr-xr-x	root/root	usr/lib/ugene/data/biostruct3d_plugin/
-rw-r--r--	root/root	usr/lib/ugene/data/biostruct3d_plugin/BioStruct3DLinks.txt
drwxr-xr-x	root/root	usr/lib/ugene/data/cmdline/
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/align-clustalo.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/align-clustalw.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/align-kalign.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/align-mafft.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/align-to-reference.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/align.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/convert-msa.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/convert-seq.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/extract-sequence.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/extract_consensus_sequence.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/extract_consensus_string.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/extract_coverage.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/fetch-sequence.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/find-orfs.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/find-repeats.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/find-sw.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/gene-by-gene.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/generate-dna.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/hmm2-build.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/hmm2-search.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/hmm3-build-and-search.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/hmm3-search.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/join-quality.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/local-blast.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/pfm-build.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/pfm-search.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/pwm-build.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/pwm-search.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/query.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/remote-request.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/revcompl.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/sitecon-build.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/sitecon-search.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/cmdline/snp.uwl
drwxr-xr-x	root/root	usr/lib/ugene/data/custom_annotations/
-rw-r--r--	root/root	usr/lib/ugene/data/custom_annotations/plasmid_features.txt
drwxr-xr-x	root/root	usr/lib/ugene/data/enzymes/
-rw-r--r--	root/root	usr/lib/ugene/data/enzymes/2023_02_25.bairoch.gz
drwxr-xr-x	root/root	usr/lib/ugene/data/genome_lengths/
-rw-r--r--	root/root	usr/lib/ugene/data/genome_lengths/danRer7.genome
-rwxr-xr-x	root/root	usr/lib/ugene/data/genome_lengths/ecoli.genome
-rwxr-xr-x	root/root	usr/lib/ugene/data/genome_lengths/hg18.genome
-rwxr-xr-x	root/root	usr/lib/ugene/data/genome_lengths/hg19.genome
-rw-r--r--	root/root	usr/lib/ugene/data/genome_lengths/mm10.genome
-rwxr-xr-x	root/root	usr/lib/ugene/data/genome_lengths/mm8.genome
-rwxr-xr-x	root/root	usr/lib/ugene/data/genome_lengths/mm9.genome
-rwxr-xr-x	root/root	usr/lib/ugene/data/genome_lengths/test.genome
-rw-r--r--	root/root	usr/lib/ugene/data/license
drwxr-xr-x	root/root	usr/lib/ugene/data/position_weight_matrix/
drwxr-xr-x	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/all_jaspar.csv
drwxr-xr-x	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0265.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0266.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0267.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0268.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0269.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0270.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0271.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0272.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0273.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0274.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0275.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0276.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0277.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0278.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0279.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0280.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0281.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0282.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0283.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0284.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0285.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0286.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0287.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0288.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0289.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0290.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0291.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0292.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0293.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0294.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0295.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0296.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0297.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0298.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0299.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0300.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0301.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0302.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0303.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0304.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0305.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0306.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0307.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0308.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0309.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0310.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0311.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0312.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0313.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0314.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0315.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0316.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0317.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0318.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0319.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0320.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0321.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0322.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0323.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0324.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0325.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0326.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0327.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0328.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0329.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0330.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0331.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0332.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0333.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0334.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0335.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0336.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0337.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0338.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0339.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0340.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0341.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0342.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0343.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0344.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0345.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0346.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0347.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0348.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0349.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0350.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0351.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0352.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0353.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0354.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0355.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0356.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0357.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0358.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0359.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0360.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0361.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0362.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0363.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0364.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0365.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0366.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0367.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0368.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0369.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0370.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0371.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0372.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0373.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0374.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0375.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0376.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0377.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0378.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0379.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0380.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0381.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0382.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0383.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0384.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0385.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0386.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0387.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0388.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0389.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0390.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0391.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0392.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0393.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0394.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0395.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0396.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0397.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0398.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0399.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0400.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0401.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0402.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0403.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0404.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0405.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0406.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0407.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0408.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0409.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0410.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0411.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0412.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0413.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0414.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0415.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0416.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0417.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0418.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0419.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0420.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0421.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0422.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0423.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0424.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0425.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0426.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0427.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0428.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0429.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0430.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0431.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0432.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0433.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0434.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0435.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0436.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0437.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0438.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0439.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0440.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/MA0441.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/fungi/matrix_list.txt
drwxr-xr-x	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0010.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0011.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0012.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0013.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0015.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0016.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0022.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0023.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0026.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA00445.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0049.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0085.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0086.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0094.2.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0126.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0165.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0166.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0167.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0168.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0169.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0170.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0171.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0172.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0173.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0174.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0175.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0176.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0177.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0178.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0179.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0180.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0181.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0182.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0183.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0184.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0185.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0186.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0187.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0188.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0189.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0190.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0191.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0192.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0193.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0194.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0195.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0196.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0197.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0198.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0199.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0200.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0201.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0202.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0203.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0204.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0205.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0206.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0207.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0208.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0209.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0210.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0211.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0212.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0213.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0214.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0215.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0216.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0217.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0218.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0219.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0220.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0221.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0222.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0223.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0224.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0225.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0226.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0227.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0228.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0229.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0230.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0231.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0232.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0233.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0234.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0235.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0236.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0237.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0238.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0239.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0240.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0241.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0242.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0243.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0244.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0245.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0246.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0247.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0248.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0249.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0250.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0251.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0252.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0253.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0254.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0255.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0256.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0257.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0443.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0444.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0446.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0447.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0448.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0449.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0450.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0451.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0452.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0453.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0454.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0455.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0456.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0457.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0458.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0459.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/MA0460.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/insects/matrix_list.txt
drwxr-xr-x	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/nematodes/
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/nematodes/MA0260.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/nematodes/MA0261.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/nematodes/MA0262.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/nematodes/MA0263.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/nematodes/MA0264.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/nematodes/matrix_list.txt
drwxr-xr-x	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/MA0001.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/MA0005.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/MA0008.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/MA0020.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/MA0021.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/MA0034.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/MA0044.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/MA0045.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/MA0053.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/MA0054.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/MA0064.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/MA0082.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/MA0096.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/MA0097.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/MA0110.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/MA0120.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/MA0121.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/MA0123.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/MA0127.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/MA0128.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/MA0129.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/plants/matrix_list.txt
drwxr-xr-x	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/urochordates/
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/urochordates/MA0118.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/urochordates/matrix_list.txt
drwxr-xr-x	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0002.2.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0003.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0004.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0006.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0007.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0009.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0014.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0017.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0018.2.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0019.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0024.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0025.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0027.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0028.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0029.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0030.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0031.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0032.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0033.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0035.2.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0036.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0037.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0038.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0039.2.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0040.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0041.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0042.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0043.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0046.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0047.2.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0048.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0050.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0051.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0052.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0055.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0056.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0057.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0058.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0059.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0060.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0061.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0062.2.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0063.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0065.2.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0066.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0067.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0068.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0069.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0070.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0071.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0072.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0073.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0074.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0075.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0076.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0077.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0078.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0079.2.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0080.2.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0081.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0083.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0084.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0087.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0088.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0089.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0090.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0091.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0092.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0093.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0095.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0098.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0099.2.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0100.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0101.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0102.2.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0103.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0104.2.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0105.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0106.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0107.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0108.2.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0109.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0111.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0112.2.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0113.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0114.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0115.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0116.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0117.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0119.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0122.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0124.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0125.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0130.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0131.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0132.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0133.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0135.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0136.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0137.2.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0138.2.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0139.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0140.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0141.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0142.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0143.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0144.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0145.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0146.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0147.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0148.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0149.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0150.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0151.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0152.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0153.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0154.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0155.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0156.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0157.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0158.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0159.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0160.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0161.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0162.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0163.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0164.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0258.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0259.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/MA0442.1.pfm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/JASPAR/vertebrates/matrix_list.txt
drwxr-xr-x	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/
drwxr-xr-x	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Alx3_3418.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Alx4_1744.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Arx_1738.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Bapx1_2343.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Barhl1_2590.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Barhl2_3868.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Barx1_2877.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Barx2_3447.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Bsx_3483.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Cart1_0997.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Cart1_1275.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Cdx1_2245.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Cdx2_4272.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Cphx_3484.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Crx_3485.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Cutl1_3494.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Cutl1_3494.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Dbx1_3486.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Dbx2_3487.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Dlx1_1741.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Dlx2_2273.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Dlx3_1030.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Dlx4_3488.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Dlx5_3419.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Dmbx1_2277.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Dobox4_3956.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Dobox5_3493.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Duxl_1286.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Emx2_3420.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/En1_3123.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/En2_0952.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Esx1_3124.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Evx1_3952.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Evx2_2645.3.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Gbx1_2883.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Gbx2_3110.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Gsc_2327.3.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Gsh2_3990.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hdx_3845.3.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hlx1_2350.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hlxb9_3422.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hmbox1_2674.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hmx1_3423.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hmx2_3424.3.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hmx3_3490.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Homez_1063.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxa10_2318.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxa11_2218.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxa13_3126.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxa1_3425.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxa2_3079.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxa3_2783.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxa4_3426.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxa5_3415.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxa6_1040.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxa7_2668.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxa7_3750.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxa9_2622.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxb13_3479.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxb3_1720.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxb4_2627.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxb5_3122.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxb6_3428.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxb7_3953.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxb8_3780.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxb9_3413.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxc10_2779.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxc11_3718.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxc12_3480.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxc13_3127.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxc4_3491.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxc5_2630.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxc6_3954.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxc8_3429.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxc9_2367.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxd10_2368.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxd11_3873.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxd12_3481.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxd13_2356.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxd1_3448.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxd3_1742.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Hoxd8_2644.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Ipf1_3815.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Irx2_0900.3.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Irx3_0920.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Irx3_2226.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Irx4_2242.3.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Irx5_2385.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Irx6_2623.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Isl2_3430.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Isx_3445.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Lbx2_3869.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Lhx1_2240.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Lhx2_0953.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Lhx3_3431.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Lhx4_1719.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Lhx5_2279.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Lhx6_2272.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Lhx6_3432.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Lhx8_2247.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Lhx9_3492.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Lmx1a_2238.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Lmx1b_3433.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Meis1_2335.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Meox1_2310.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Mrg1_2246.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Mrg2_2302.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Msx1_3031.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Msx2_3449.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Msx3_3206.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Nkx1-1_3856.3.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Nkx1-2_3214.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Nkx2-2_2823.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Nkx2-3_3435.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Nkx2-4_3074.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Nkx2-5_3436.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Nkx2-6_3437.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Nkx2-9_3082.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Nkx3-1_2923.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Nkx6-1_2825.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Nkx6-1_2825.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Nkx6-3_3446.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Obox1_3970.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Obox2_3438.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Obox3_3439.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Obox5_2284.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Obox5_3963.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Obox6_3440.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Og2x_3719.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Otp_3496.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Otx1_2325.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Otx2_3441.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Pax4_3989.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Pax6_3838.3.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Pax7_3783.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Pbx1_3203.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Phox2a_3947.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Phox2b_3948.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Pitx1_2312.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Pitx2_2274.3.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Pitx3_3497.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Pknox1_2364.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Pknox2_3077.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Pou1f1_3818.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Pou2f1_3081.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Pou2f2_3748.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Pou2f3_3986.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Pou3f1_3819.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Pou3f2_2824.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Pou3f3_3235.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Pou3f4_3773.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Pou4f3_2791.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Pou6f1_1731.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Pou6f1_3733.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Prop1_3949.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Prrx1_3442.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Prrx2_3072.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Rax_3443.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Rhox11_1765.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Rhox11_2205.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Rhox6_4251.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Shox2_2641.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Six1_0935.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Six2_2307.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Six3_1732.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Six4_2860.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Six6_2267.4.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Six6_2267.5.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Tcf1_2666.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Tcf2_0913.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Tgif1_2342.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Tgif2_3451.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Titf1_1722.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Tlx2_3498.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Uncx4.1_2281.2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Vax1_3499.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Vax2_3500.1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/Cell08/Vsx1_1728.1.pwm
drwxr-xr-x	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Aft1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Aro80.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Asg1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Bas1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Cbf1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Cep3.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Cha4.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Cup9.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Ecm22.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Fhl1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Fkh1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Fkh2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Gal4.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Gat1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Gat3.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Gat4.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Gcn4.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Gln3.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Gsm1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Gzf3.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Hal9.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Leu3.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Lys14.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Matalpha2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Mbp1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Mcm1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Met32.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Mga1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Mig1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Mig2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Mig3.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Ndt80.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Nhp6a.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Nhp6b.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Nrg1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Oaf1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Pbf1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Pbf2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Pdr1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Phd1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Pho2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Pho4.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Put3.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Rap1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Rdr1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Rds1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Rds2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Rgt1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Rph1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Rpn4.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Rsc3.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Rsc30.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Rtg3.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Sfl1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Sfp1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Sip4.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Skn7.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Smp1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Spt15.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Srd1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Stb3.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Stp2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Stp4.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Sum1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Sut2.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Tbf1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Tbs1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Tea1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Tec1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Tye7.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Ume6.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Usv1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Xbp1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Yap1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Yap6.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Ybr239c.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Ydr520c.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Yer130c.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Ygr067c.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Ykl222c.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Yll054c.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Yml081w.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Ynr063w.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Yox1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Ypr013c.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Ypr015c.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Ypr196w.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Yrm1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/GR09/Yrr1.pwm
drwxr-xr-x	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/NBT06/
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/NBT06/Cbf1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/NBT06/Ceh-22.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/NBT06/Oct-1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/NBT06/Rap1.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/NBT06/Zif268.pwm
drwxr-xr-x	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/PNAS08/
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/PNAS08/Cgd2_3490.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/PNAS08/PF14_0633.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/PNAS08/PFF0200c.pwm
-rw-r--r--	root/root	usr/lib/ugene/data/position_weight_matrix/UniPROBE/all_uniprobe.csv
drwxr-xr-x	root/root	usr/lib/ugene/data/primer3/
-rw-r--r--	root/root	usr/lib/ugene/data/primer3/drosophila.w.transposons.txt
-rw-r--r--	root/root	usr/lib/ugene/data/primer3/humrep_and_simple.txt
drwxr-xr-x	root/root	usr/lib/ugene/data/primer3/presets/
-rw-r--r--	root/root	usr/lib/ugene/data/primer3/presets/Annealing Temp.txt
-rw-r--r--	root/root	usr/lib/ugene/data/primer3/presets/Cloning Primers.txt
-rw-r--r--	root/root	usr/lib/ugene/data/primer3/presets/Default.txt
-rw-r--r--	root/root	usr/lib/ugene/data/primer3/presets/Default2.txt
-rw-r--r--	root/root	usr/lib/ugene/data/primer3/presets/Probe.txt
-rw-r--r--	root/root	usr/lib/ugene/data/primer3/presets/Recombinase Polymerase Amplification.txt
-rw-r--r--	root/root	usr/lib/ugene/data/primer3/presets/Secondary Structures.txt
-rw-r--r--	root/root	usr/lib/ugene/data/primer3/presets/qPCR.txt
-rw-r--r--	root/root	usr/lib/ugene/data/primer3/rodent_ref.txt
-rw-r--r--	root/root	usr/lib/ugene/data/primer3/rodrep_and_simple.txt
drwxr-xr-x	root/root	usr/lib/ugene/data/query_samples/
-rw-r--r--	root/root	usr/lib/ugene/data/query_samples/RepeatsWithORF.uql
-rw-r--r--	root/root	usr/lib/ugene/data/query_samples/SimpleGene.uql
drwxr-xr-x	root/root	usr/lib/ugene/data/samples/
drwxr-xr-x	root/root	usr/lib/ugene/data/samples/ABIF/
-rw-r--r--	root/root	usr/lib/ugene/data/samples/ABIF/A01.abi
drwxr-xr-x	root/root	usr/lib/ugene/data/samples/ACE/
-rw-r--r--	root/root	usr/lib/ugene/data/samples/ACE/BL060C3.ace
-rw-r--r--	root/root	usr/lib/ugene/data/samples/ACE/K26.ace
drwxr-xr-x	root/root	usr/lib/ugene/data/samples/APR/
-rw-r--r--	root/root	usr/lib/ugene/data/samples/APR/DNA.apr
-rw-r--r--	root/root	usr/lib/ugene/data/samples/APR/gyrA.apr
drwxr-xr-x	root/root	usr/lib/ugene/data/samples/Assembly/
-rw-r--r--	root/root	usr/lib/ugene/data/samples/Assembly/chrM.fa
-rw-r--r--	root/root	usr/lib/ugene/data/samples/Assembly/chrM.sam
-rw-r--r--	root/root	usr/lib/ugene/data/samples/Assembly/chrM.sorted.bam
drwxr-xr-x	root/root	usr/lib/ugene/data/samples/CLUSTALW/
-rw-r--r--	root/root	usr/lib/ugene/data/samples/CLUSTALW/COI.aln
-rw-r--r--	root/root	usr/lib/ugene/data/samples/CLUSTALW/HIV-1.aln
-rw-r--r--	root/root	usr/lib/ugene/data/samples/CLUSTALW/ty3.aln.gz
drwxr-xr-x	root/root	usr/lib/ugene/data/samples/EMBL/
-rw-r--r--	root/root	usr/lib/ugene/data/samples/EMBL/AF177870.emb
-rw-r--r--	root/root	usr/lib/ugene/data/samples/EMBL/AL000263.emb
drwxr-xr-x	root/root	usr/lib/ugene/data/samples/FASTA/
-rw-r--r--	root/root	usr/lib/ugene/data/samples/FASTA/human_T1.fa
drwxr-xr-x	root/root	usr/lib/ugene/data/samples/FASTQ/
-rw-r--r--	root/root	usr/lib/ugene/data/samples/FASTQ/eas.fastq
drwxr-xr-x	root/root	usr/lib/ugene/data/samples/GFF/
-rw-r--r--	root/root	usr/lib/ugene/data/samples/GFF/5prime_utr_intron_A20.gff
-rw-r--r--	root/root	usr/lib/ugene/data/samples/GFF/5prime_utr_intron_A21.gff
drwxr-xr-x	root/root	usr/lib/ugene/data/samples/Genbank/
-rw-r--r--	root/root	usr/lib/ugene/data/samples/Genbank/CVU55762.gb
-rw-r--r--	root/root	usr/lib/ugene/data/samples/Genbank/NC_014267.1.gb
-rw-r--r--	root/root	usr/lib/ugene/data/samples/Genbank/PBR322.gb
-rw-r--r--	root/root	usr/lib/ugene/data/samples/Genbank/murine.gb
-rw-r--r--	root/root	usr/lib/ugene/data/samples/Genbank/sars.gb
drwxr-xr-x	root/root	usr/lib/ugene/data/samples/HMM/
-rw-r--r--	root/root	usr/lib/ugene/data/samples/HMM/aligment15900.hmm
drwxr-xr-x	root/root	usr/lib/ugene/data/samples/MMDB/
-rw-r--r--	root/root	usr/lib/ugene/data/samples/MMDB/1CRN.prt
-rw-r--r--	root/root	usr/lib/ugene/data/samples/MMDB/2JQS.prt
drwxr-xr-x	root/root	usr/lib/ugene/data/samples/MSF/
-rw-r--r--	root/root	usr/lib/ugene/data/samples/MSF/HMA.msf
-rw-r--r--	root/root	usr/lib/ugene/data/samples/MSF/lipid8.msf
-rw-r--r--	root/root	usr/lib/ugene/data/samples/MSF/pla2_20.msf
drwxr-xr-x	root/root	usr/lib/ugene/data/samples/Newick/
-rw-r--r--	root/root	usr/lib/ugene/data/samples/Newick/COI.nwk
drwxr-xr-x	root/root	usr/lib/ugene/data/samples/PDB/
-rw-r--r--	root/root	usr/lib/ugene/data/samples/PDB/1CF7.PDB
-rw-r--r--	root/root	usr/lib/ugene/data/samples/PDB/1CRN.PDB
-rw-r--r--	root/root	usr/lib/ugene/data/samples/PDB/3INS.PDB
drwxr-xr-x	root/root	usr/lib/ugene/data/samples/Raw/
-rw-r--r--	root/root	usr/lib/ugene/data/samples/Raw/raw.seq
drwxr-xr-x	root/root	usr/lib/ugene/data/samples/SCF/
-rw-r--r--	root/root	usr/lib/ugene/data/samples/SCF/90-JRI-07.scf
drwxr-xr-x	root/root	usr/lib/ugene/data/samples/Sanger/
-rw-r--r--	root/root	usr/lib/ugene/data/samples/Sanger/alignment.ugenedb
drwxr-xr-x	root/root	usr/lib/ugene/data/samples/Stockholm/
-rw-r--r--	root/root	usr/lib/ugene/data/samples/Stockholm/CBS.sto
-rw-r--r--	root/root	usr/lib/ugene/data/samples/Stockholm/UPSK.sto
drwxr-xr-x	root/root	usr/lib/ugene/data/samples/Swiss-Prot/
-rw-r--r--	root/root	usr/lib/ugene/data/samples/Swiss-Prot/D0VTW9.txt
-rw-r--r--	root/root	usr/lib/ugene/data/samples/Swiss-Prot/P01375.txt
-rw-r--r--	root/root	usr/lib/ugene/data/samples/Swiss-Prot/P16152.txt
drwxr-xr-x	root/root	usr/lib/ugene/data/sitecon_models/
drwxr-xr-x	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/CEBP_a.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/CEBPall.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/CLOCK.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/CRE.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/E2F1.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/E2F1DP1sel1.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/EGR1.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/Eklf.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/GATA1.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/GATA_ALL.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/Gata2.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/Gata3.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/HMG1.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/HNF1.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/HNF3_4.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/HNF4.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/MYOGsel3.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/MyoD.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/NF1.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/NFATp.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/NFkB_all.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/NFkB_hetero.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/NFkB_homo.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/Nf_e2.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/Nrf2.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/Oct1.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/Oct_all.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/PPRE.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/Pu1.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/SRE_can.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/STAT.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/STAT1.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/TTF1.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/USF.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/cMyc_can.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/er2.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/irf.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/isre.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/nfy.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/p53.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/setCREB.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/setCREBzag.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/srf_all.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/eukaryotic/yy1.sitecon.gz
drwxr-xr-x	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/AgaR.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/AraC.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/ArcA.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/ArgR.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/CpxR.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/Crp.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/CysB.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/CytR.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/DeoR.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/DnaA.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/FUR.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/FadR.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/FlhDC.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/Fnr.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/Frur.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/GALR.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/GALS.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/GLPR.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/GNTR.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/HNS.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/ICLR.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/IHF.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/ISCR1.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/ISCR3.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/LEXA.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/Lrp.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/MALT.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/MARA.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/MELR.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/MLC.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/MODE.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/MetJ.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/MetR1.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/NAC.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/NAGC_new2.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/NANR.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/NARL2.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/NARP.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/NTRC.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/NarL.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/OmpR.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/OxyR.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/PHOB.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/PHOP.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/PurR.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/ROB.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/RcsB_1core.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/RcsB_2core.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/Rob2.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/TORR.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/TRPR.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/TyrR.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/fis_new1.sitecon.gz
-rw-r--r--	root/root	usr/lib/ugene/data/sitecon_models/prokaryotic/soxS.sitecon.gz
drwxr-xr-x	root/root	usr/lib/ugene/data/snp_scripts/
-rw-r--r--	root/root	usr/lib/ugene/data/snp_scripts/SNPChIPTools.py
-rw-r--r--	root/root	usr/lib/ugene/data/snp_scripts/pdb_uniprot_chain_map.lst.2
-rw-r--r--	root/root	usr/lib/ugene/data/snp_scripts/protstability1d.py
-rw-r--r--	root/root	usr/lib/ugene/data/snp_scripts/protstability3d.py
-rw-r--r--	root/root	usr/lib/ugene/data/snp_scripts/rsnp.py
-rw-r--r--	root/root	usr/lib/ugene/data/snp_scripts/snp2pdbsite.py
-rw-r--r--	root/root	usr/lib/ugene/data/snp_scripts/update_d_db.py
-rw-r--r--	root/root	usr/lib/ugene/data/translations.txt
drwxr-xr-x	root/root	usr/lib/ugene/data/weight_matrix/
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/blosum100.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/blosum30.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/blosum35.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/blosum40.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/blosum45.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/blosum50.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/blosum55.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/blosum60.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/blosum62.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/blosum65.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/blosum70.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/blosum75.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/blosum80.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/blosum85.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/blosum90.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/blosumn.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/dayhoff.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/dna.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/gonnet.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/identity.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/match.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/md_10.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/md_20.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/md_40.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/nuc.4.4.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam10.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam100.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam110.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam120.cdi.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam120.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam130.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam140.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam150.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam160.cdi.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam160.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam170.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam180.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam190.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam20.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam200.cdi.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam200.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam210.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam220.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam230.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam240.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam250.cdi.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam250.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam260.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam270.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam280.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam290.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam30.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam300.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam310.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam320.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam330.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam340.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam350.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam360.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam370.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam380.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam390.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam40.cdi.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam40.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam400.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam410.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam420.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam430.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam440.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam450.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam460.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam470.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam480.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam490.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam50.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam500.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam60.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam70.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam80.cdi.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam80.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/pam90.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/rna.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/vtml160.txt
-rw-r--r--	root/root	usr/lib/ugene/data/weight_matrix/vtml200.txt
drwxr-xr-x	root/root	usr/lib/ugene/data/workflow_samples/
drwxr-xr-x	root/root	usr/lib/ugene/data/workflow_samples/Alignment/
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Alignment/basic_align.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Alignment/extract_msa_consensus_as_seq.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Alignment/extract_msa_consensus_as_text.uwl
drwxr-xr-x	root/root	usr/lib/ugene/data/workflow_samples/Conversions/
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Conversions/faqual2fastq.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Conversions/msa2clustal.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Conversions/query2alignment.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Conversions/seq2gen.uwl
drwxr-xr-x	root/root	usr/lib/ugene/data/workflow_samples/Custom elements/
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Custom elements/casava-fastq-filter.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Custom elements/fastq-trimmer.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Custom elements/script-dump-sequence-info.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Custom elements/script-linkdata-fetch-seq.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Custom elements/script-quality-filter.uwl
drwxr-xr-x	root/root	usr/lib/ugene/data/workflow_samples/Data marking/
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Data marking/annotation_marker.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Data marking/length_marker.uwl
drwxr-xr-x	root/root	usr/lib/ugene/data/workflow_samples/Data merging/
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Data merging/find-substrings.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Data merging/merge-sequence.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Data merging/tfbs.uwl
drwxr-xr-x	root/root	usr/lib/ugene/data/workflow_samples/HMMER/
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/HMMER/build-test-HMM.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/HMMER/searchHMM.uwl
drwxr-xr-x	root/root	usr/lib/ugene/data/workflow_samples/NGS/
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/chipseq_coverage.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/consensus.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/extract_coverage.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/extract_transcript_seq.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/fastqc.uwl
drwxr-xr-x	root/root	usr/lib/ugene/data/workflow_samples/NGS/from_tools_menu_only/
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/from_tools_menu_only/ngs_assembly.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/ngs_assembly_illumina_pe.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/ngs_assembly_illumina_pe_nanopore.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/ngs_assembly_illumina_se.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/ngs_transcriptomics_tophat_stringtie.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/ngs_transcriptomics_tuxedo.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/ngs_variant_annotation.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/ngs_variant_calling.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/ngs_variant_calling_full.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/raw_chip.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/raw_dna.uwl
drwxr-xr-x	root/root	usr/lib/ugene/data/workflow_samples/NGS/raw_ngs/
drwxr-xr-x	root/root	usr/lib/ugene/data/workflow_samples/NGS/raw_ngs/chipseq/
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/raw_ngs/chipseq/chipseq_paired.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/raw_ngs/chipseq/chipseq_single.uwl
drwxr-xr-x	root/root	usr/lib/ugene/data/workflow_samples/NGS/raw_ngs/dnaseq/
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/raw_ngs/dnaseq/dna_paired.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/raw_ngs/dnaseq/dna_single.uwl
drwxr-xr-x	root/root	usr/lib/ugene/data/workflow_samples/NGS/raw_ngs/rnaseq/
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/raw_ngs/rnaseq/rnaseq_filtration_paired.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/raw_ngs/rnaseq/rnaseq_filtration_single.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/raw_ngs/rnaseq/rnaseq_paired.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/raw_ngs/rnaseq/rnaseq_single.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/raw_rna.uwl
drwxr-xr-x	root/root	usr/lib/ugene/data/workflow_samples/NGS/tuxedo/
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/tuxedo/tuxedo_main.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/tuxedo/tuxedo_main_paired.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/tuxedo/tuxedo_no_novel_transcr.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/tuxedo/tuxedo_no_novel_transcr_paired.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/tuxedo/tuxedo_single_dataset.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/tuxedo/tuxedo_single_dataset_paired.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/NGS/unmapped_reads.uwl
drwxr-xr-x	root/root	usr/lib/ugene/data/workflow_samples/Sanger sequencing/
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Sanger sequencing/trim-and-align.uwl
drwxr-xr-x	root/root	usr/lib/ugene/data/workflow_samples/Scenarios/
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Scenarios/filter_matched.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Scenarios/find_inverted_repeats.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Scenarios/find_sequences.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Scenarios/gene_by_gene_report.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Scenarios/group_primers_pairs.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Scenarios/intersect_annotations.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Scenarios/length_filter.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Scenarios/merge_sequence_annotation.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Scenarios/pcr.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Scenarios/remote_blasting.uwl
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Scenarios/translate_seq_and_compl.uwl
drwxr-xr-x	root/root	usr/lib/ugene/data/workflow_samples/Transcriptomics/
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/Transcriptomics/SearchTFBS.uwl
drwxr-xr-x	root/root	usr/lib/ugene/data/workflow_samples/users/
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/users/CASAVA FASTQ filter.usa
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/users/Dump sequence info.usa
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/users/FASTQ Trimmer.usa
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/users/Get the first half of sequence.usa
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/users/Get the second half of sequence.usa
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/users/LengthMarker.usa
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/users/LinkData Fetch.usa
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/users/QualityFilter.usa
-rw-r--r--	root/root	usr/lib/ugene/data/workflow_samples/users/Read one sequence.usa
drwxr-xr-x	root/root	usr/lib/ugene/imageformats/
-rwxr-xr-x	root/root	usr/lib/ugene/imageformats/libqgif.so
-rwxr-xr-x	root/root	usr/lib/ugene/imageformats/libqicns.so
-rwxr-xr-x	root/root	usr/lib/ugene/imageformats/libqjpeg.so
-rwxr-xr-x	root/root	usr/lib/ugene/imageformats/libqsvg.so
-rwxr-xr-x	root/root	usr/lib/ugene/imageformats/libqtiff.so
-rwxr-xr-x	root/root	usr/lib/ugene/imageformats/libqwbmp.so
-rwxr-xr-x	root/root	usr/lib/ugene/imageformats/libqwebp.so
-rwxr-xr-x	root/root	usr/lib/ugene/libQt5Core.so.5
-rwxr-xr-x	root/root	usr/lib/ugene/libQt5DBus.so.5
-rwxr-xr-x	root/root	usr/lib/ugene/libQt5Gui.so.5
-rwxr-xr-x	root/root	usr/lib/ugene/libQt5Network.so.5
-rwxr-xr-x	root/root	usr/lib/ugene/libQt5NetworkAuth.so.5
-rwxr-xr-x	root/root	usr/lib/ugene/libQt5PrintSupport.so.5
-rwxr-xr-x	root/root	usr/lib/ugene/libQt5Svg.so.5
-rwxr-xr-x	root/root	usr/lib/ugene/libQt5WebSockets.so.5
-rwxr-xr-x	root/root	usr/lib/ugene/libQt5Widgets.so.5
-rwxr-xr-x	root/root	usr/lib/ugene/libQt5XcbQpa.so.5
-rwxr-xr-x	root/root	usr/lib/ugene/libQt5Xml.so.5
-rwxr-xr-x	root/root	usr/lib/ugene/libU2Algorithm.so
-rwxr-xr-x	root/root	usr/lib/ugene/libU2Core.so
-rwxr-xr-x	root/root	usr/lib/ugene/libU2Designer.so
-rwxr-xr-x	root/root	usr/lib/ugene/libU2Formats.so
-rwxr-xr-x	root/root	usr/lib/ugene/libU2Gui.so
-rwxr-xr-x	root/root	usr/lib/ugene/libU2Lang.so
-rwxr-xr-x	root/root	usr/lib/ugene/libU2Private.so
-rwxr-xr-x	root/root	usr/lib/ugene/libU2Script.so
-rwxr-xr-x	root/root	usr/lib/ugene/libU2Test.so
-rwxr-xr-x	root/root	usr/lib/ugene/libU2View.so
-rwxr-xr-x	root/root	usr/lib/ugene/libbreakpad.so
-rwxr-xr-x	root/root	usr/lib/ugene/libqtscript.so
-rwxr-xr-x	root/root	usr/lib/ugene/libugenedb.so
-rw-r--r--	root/root	usr/lib/ugene/libxcb-xinerama.so.0
drwxr-xr-x	root/root	usr/lib/ugene/platforms/
-rwxr-xr-x	root/root	usr/lib/ugene/platforms/libqxcb.so
drwxr-xr-x	root/root	usr/lib/ugene/platformthemes/
-rwxr-xr-x	root/root	usr/lib/ugene/platformthemes/libqgtk3.so
drwxr-xr-x	root/root	usr/lib/ugene/plugins/
-rw-r--r--	root/root	usr/lib/ugene/plugins/annotator.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/annotator.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/ball.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/ball.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/biostruct3d_view.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/biostruct3d_view.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/chroma_view.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/chroma_view.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/circular_view.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/circular_view.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/dbi_bam.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/dbi_bam.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/dna_export.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/dna_export.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/dna_flexibility.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/dna_flexibility.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/dna_graphpack.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/dna_graphpack.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/dna_stat.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/dna_stat.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/dotplot.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/dotplot.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/enzymes.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/enzymes.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/external_tool_support.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/external_tool_support.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/genecut.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/genecut.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/genome_aligner.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/genome_aligner.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/gor4.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/gor4.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/hmm2.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/hmm2.plugin
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libannotator.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libball.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libbiostruct3d_view.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libchroma_view.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libcircular_view.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libdbi_bam.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libdna_export.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libdna_flexibility.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libdna_graphpack.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libdna_stat.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libdotplot.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libenzymes.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libexternal_tool_support.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libgenecut.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libgenome_aligner.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libgor4.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libhmm2.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/liblinkdata_support.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/liborf_marker.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libpcr.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libphylip.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libprimer3.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libpsipred.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libptools.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libquery_designer.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libremote_blast.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/librepeat_finder.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libsitecon.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libsmith_waterman.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libumuscle.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libvariants.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libweight_matrix.so
-rwxr-xr-x	root/root	usr/lib/ugene/plugins/libworkflow_designer.so
-rw-r--r--	root/root	usr/lib/ugene/plugins/linkdata_support.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/linkdata_support.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/orf_marker.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/orf_marker.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/pcr.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/pcr.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/phylip.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/phylip.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/primer3.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/primer3.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/psipred.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/psipred.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/ptools.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/ptools.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/query_designer.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/query_designer.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/remote_blast.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/remote_blast.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/repeat_finder.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/repeat_finder.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/sitecon.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/sitecon.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/smith_waterman.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/smith_waterman.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/umuscle.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/umuscle.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/variants.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/variants.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/weight_matrix.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/weight_matrix.plugin
-rw-r--r--	root/root	usr/lib/ugene/plugins/workflow_designer.license
-rw-r--r--	root/root	usr/lib/ugene/plugins/workflow_designer.plugin
-rwxr-xr-x	root/root	usr/lib/ugene/plugins_checker
drwxrwxr-x	root/root	usr/lib/ugene/tools/
drwxrwxr-x	root/root	usr/lib/ugene/tools/bedtools/
-rw-rw-r--	root/root	usr/lib/ugene/tools/bedtools/LICENSE
-rwxrwxr-x	root/root	usr/lib/ugene/tools/bedtools/bedtools
-rw-rw-r--	root/root	usr/lib/ugene/tools/bedtools/version.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/bigwig/
-rw-rw-r--	root/root	usr/lib/ugene/tools/bigwig/LICENSE
-rwxrwxr-x	root/root	usr/lib/ugene/tools/bigwig/bedGraphToBigWig
-rw-rw-r--	root/root	usr/lib/ugene/tools/bigwig/version.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/bowtie1/
-rw-rw-r--	root/root	usr/lib/ugene/tools/bowtie1/LICENSE
-rwxrwxr-x	root/root	usr/lib/ugene/tools/bowtie1/bowtie
-rwxrwxr-x	root/root	usr/lib/ugene/tools/bowtie1/bowtie-align-l
-rwxrwxr-x	root/root	usr/lib/ugene/tools/bowtie1/bowtie-align-s
-rwxrwxr-x	root/root	usr/lib/ugene/tools/bowtie1/bowtie-build
-rwxrwxr-x	root/root	usr/lib/ugene/tools/bowtie1/bowtie-build-l
-rwxrwxr-x	root/root	usr/lib/ugene/tools/bowtie1/bowtie-build-s
-rwxrwxr-x	root/root	usr/lib/ugene/tools/bowtie1/bowtie-inspect
-rwxrwxr-x	root/root	usr/lib/ugene/tools/bowtie1/bowtie-inspect-l
-rwxrwxr-x	root/root	usr/lib/ugene/tools/bowtie1/bowtie-inspect-s
-rw-rw-r--	root/root	usr/lib/ugene/tools/bowtie1/version.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/bowtie2/
-rw-rw-r--	root/root	usr/lib/ugene/tools/bowtie2/LICENSE
-rwxrwxr-x	root/root	usr/lib/ugene/tools/bowtie2/bowtie2
-rwxrwxr-x	root/root	usr/lib/ugene/tools/bowtie2/bowtie2-align-l
-rwxrwxr-x	root/root	usr/lib/ugene/tools/bowtie2/bowtie2-align-s
-rwxrwxr-x	root/root	usr/lib/ugene/tools/bowtie2/bowtie2-build
-rwxrwxr-x	root/root	usr/lib/ugene/tools/bowtie2/bowtie2-build-l
-rwxrwxr-x	root/root	usr/lib/ugene/tools/bowtie2/bowtie2-build-s
-rwxrwxr-x	root/root	usr/lib/ugene/tools/bowtie2/bowtie2-inspect
-rwxrwxr-x	root/root	usr/lib/ugene/tools/bowtie2/bowtie2-inspect-l
-rwxrwxr-x	root/root	usr/lib/ugene/tools/bowtie2/bowtie2-inspect-s
-rw-rw-r--	root/root	usr/lib/ugene/tools/bowtie2/version.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/bwa/
-rw-rw-r--	root/root	usr/lib/ugene/tools/bwa/LICENSE
-rwxrwxr-x	root/root	usr/lib/ugene/tools/bwa/bwa
-rw-rw-r--	root/root	usr/lib/ugene/tools/bwa/version.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/cap3/
-rw-rw-r--	root/root	usr/lib/ugene/tools/cap3/README
-rw-rw-r--	root/root	usr/lib/ugene/tools/cap3/aceform
-rwxrwxr-x	root/root	usr/lib/ugene/tools/cap3/cap3
-rw-rw-r--	root/root	usr/lib/ugene/tools/cap3/doc
-rwxrwxr-x	root/root	usr/lib/ugene/tools/cap3/formcon
-rw-rw-r--	root/root	usr/lib/ugene/tools/cap3/version.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/clustalw/
-rwxrwxr-x	root/root	usr/lib/ugene/tools/clustalw/clustalw2
-rw-rw-r--	root/root	usr/lib/ugene/tools/clustalw/clustalw_help
-rw-rw-r--	root/root	usr/lib/ugene/tools/clustalw/version.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/cufflinks/
-rwxrwxr-x	root/root	usr/lib/ugene/tools/cufflinks/cuffcompare
-rwxrwxr-x	root/root	usr/lib/ugene/tools/cufflinks/cuffdiff
-rwxrwxr-x	root/root	usr/lib/ugene/tools/cufflinks/cufflinks
-rwxrwxr-x	root/root	usr/lib/ugene/tools/cufflinks/cuffmerge
-rwxrwxr-x	root/root	usr/lib/ugene/tools/cufflinks/cuffnorm
-rwxrwxr-x	root/root	usr/lib/ugene/tools/cufflinks/cuffquant
-rwxrwxr-x	root/root	usr/lib/ugene/tools/cufflinks/gffread
-rwxrwxr-x	root/root	usr/lib/ugene/tools/cufflinks/gtf_to_sam
-rw-rw-r--	root/root	usr/lib/ugene/tools/cufflinks/version.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/Configuration/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Configuration/adapter_list.txt
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Configuration/contaminant_list.txt
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Configuration/limits.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/Help/
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/Help/1 Introduction/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/1 Introduction/1.1 What is FastQC.html
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/Help/2 Basic Operations/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/2 Basic Operations/2.1 Opening a sequence file.html
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/2 Basic Operations/2.2 Evaluating Results.html
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/2 Basic Operations/2.3 Saving a Report.html
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/1 Basic Statistics.html
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/10 Adapter Content.html
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/11 Kmer Content.html
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/12 Per Tile Sequence Quality.html
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/2 Per Base Sequence Quality.html
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/3 Per Sequence Quality Scores.html
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/4 Per Base Sequence Content.html
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/5 Per Sequence GC Content.html
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/6 Per Base N Content.html
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/7 Sequence Length Distribution.html
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/8 Duplicate Sequences.html
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/9 Overrepresented Sequences.html
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/duplication_levels.png
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/kmer_profiles.png
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/per_base_gc_content.png
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/per_base_n_content.png
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/per_base_quality.png
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/per_base_sequence_content.png
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/per_sequence_gc_content.png
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/per_sequence_quality.png
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/per_tile_quality.png
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Help/3 Analysis Modules/sequence_length_distribution.png
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/INSTALL.txt
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/LICENSE
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/LICENSE.txt
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/LICENSE_JHDF5.txt
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/README.md
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/README.txt
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/RELEASE_NOTES.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/Templates/
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/Templates/Icons/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Templates/Icons/error.png
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Templates/Icons/fastqc_icon.png
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Templates/Icons/tick.png
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Templates/Icons/warning.png
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Templates/fastqc2fo.xsl
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/Templates/header_template.html
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/cisd-jhdf5.jar
-rwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/fastqc
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/fastqc_icon.ico
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/htsjdk.jar
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/jbzip2-0.9.jar
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/net/
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/net/sourceforge/
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/net/sourceforge/iharder/
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/net/sourceforge/iharder/base64/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/net/sourceforge/iharder/base64/Base64$1.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/net/sourceforge/iharder/base64/Base64$InputStream.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/net/sourceforge/iharder/base64/Base64$OutputStream.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/net/sourceforge/iharder/base64/Base64.class
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/org/
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/org/apache/
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/analysis/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/analysis/UnivariateFunction.class
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/analysis/solvers/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/analysis/solvers/AbstractUnivariateSolver.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/analysis/solvers/AllowedSolution.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/analysis/solvers/BaseAbstractUnivariateSolver.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/analysis/solvers/BaseUnivariateSolver.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/analysis/solvers/BracketedUnivariateSolver.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/analysis/solvers/BrentSolver.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/analysis/solvers/UnivariateSolver.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/analysis/solvers/UnivariateSolverUtils.class
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/distribution/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/distribution/AbstractIntegerDistribution.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/distribution/AbstractRealDistribution$1.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/distribution/AbstractRealDistribution.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/distribution/BetaDistribution.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/distribution/BinomialDistribution.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/distribution/CauchyDistribution.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/distribution/ChiSquaredDistribution.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/distribution/FDistribution.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/distribution/GammaDistribution.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/distribution/HypergeometricDistribution.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/distribution/IntegerDistribution.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/distribution/NormalDistribution.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/distribution/PascalDistribution.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/distribution/PoissonDistribution.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/distribution/RealDistribution.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/distribution/SaddlePointExpansion.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/distribution/TDistribution.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/distribution/WeibullDistribution.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/distribution/ZipfDistribution.class
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/ConvergenceException.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/DimensionMismatchException.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/MathArithmeticException.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/MathIllegalArgumentException.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/MathIllegalNumberException.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/MathIllegalStateException.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/MathInternalError.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/MaxCountExceededException.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/NoBracketingException.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/NotFiniteNumberException.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/NotPositiveException.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/NotStrictlyPositiveException.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/NullArgumentException.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/NumberIsTooLargeException.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/NumberIsTooSmallException.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/OutOfRangeException.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/TooManyEvaluationsException.class
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/util/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/util/ArgUtils.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/util/ExceptionContext.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/util/ExceptionContextProvider.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/util/Localizable.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/exception/util/LocalizedFormats.class
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/random/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/random/AbstractWell.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/random/BitsStreamGenerator.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/random/RandomData.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/random/RandomDataImpl.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/random/RandomGenerator.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/random/Well19937c.class
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/special/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/special/Beta$1.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/special/Beta.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/special/Erf.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/special/Gamma$1.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/special/Gamma.class
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/util/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/util/ArithmeticUtils.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/util/ContinuedFraction.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/util/DoubleArray.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/util/FastMath$ExpFracTable.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/util/FastMath$ExpIntTable.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/util/FastMath$lnMant.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/util/FastMath.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/util/FastMathCalc.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/util/FastMathLiteralArrays.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/util/Incrementor$1.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/util/Incrementor$MaxCountExceededCallback.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/util/Incrementor.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/util/MathUtils.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/util/Precision.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/org/apache/commons/math3/util/ResizableDoubleArray.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/run_fastqc.bat
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/sam-1.103.jar
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/uk/
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/uk/ac/
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Analysis/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Analysis/AnalysisListener.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Analysis/AnalysisQueue.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Analysis/AnalysisRunner.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Analysis/OfflineRunner.class
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Dialogs/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Dialogs/AboutDialog$1.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Dialogs/AboutDialog.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Dialogs/FastQCTitlePanel$SmoothJLabel.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Dialogs/FastQCTitlePanel.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Dialogs/WelcomePanel.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/FastQCApplication$1.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/FastQCApplication.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/FastQCConfig.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/FastQCMenuBar.class
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/FileFilters/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/FileFilters/BAMFileFilter.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/FileFilters/CasavaFastQFileFilter.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/FileFilters/FastQFileFilter.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/FileFilters/GobyFileFilter.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/FileFilters/MappedBAMFileFilter.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/FileFilters/SequenceFileFilter.class
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Graphs/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Graphs/BaseGroup.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Graphs/LineGraph.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Graphs/QualityBoxPlot.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Graphs/TileGraph.class
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Help/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Help/HelpDialog.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Help/HelpIndexRoot$FileSorter.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Help/HelpIndexRoot.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Help/HelpPage.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Help/HelpPageDisplay$HelpEditor.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Help/HelpPageDisplay.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Help/HelpSearchPanel.class
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/AbstractQCModule.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/AdapterContent$Adapter.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/AdapterContent$ResultsTable.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/AdapterContent.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/BasicStats$ResultsTable.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/BasicStats.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/DuplicationLevel.class
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/GCModel/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/GCModel/GCModel.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/GCModel/GCModelValue.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/KmerContent$Kmer.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/KmerContent$ResultsTable.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/KmerContent.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/ModuleConfig.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/ModuleFactory.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/NContent.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/OverRepresentedSeqs$OverrepresentedSeq.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/OverRepresentedSeqs$ResultsTable.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/OverRepresentedSeqs.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/PerBaseQualityScores.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/PerBaseSequenceContent.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/PerSequenceGCContent.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/PerSequenceQualityScores.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/PerTileQualityScores.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/QCModule.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Modules/SequenceLengthDistribution.class
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Report/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Report/HTMLReportArchive.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Report/stylesheet.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Resources/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Resources/error.png
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Resources/fastqc_icon.png
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Resources/fastqc_icon.svg
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Resources/fastqc_icon_100.png
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Resources/tick.png
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Resources/warning.png
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Results/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Results/ResultsPanel$ModuleRenderer.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Results/ResultsPanel.class
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Sequence/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Sequence/BAMFile.class
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Sequence/Contaminant/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Sequence/Contaminant/Contaminant.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Sequence/Contaminant/ContaminantHit.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Sequence/Contaminant/ContaminentFinder.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Sequence/Fast5File.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Sequence/FastQFile.class
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Sequence/QualityEncoding/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Sequence/QualityEncoding/PhredEncoding.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Sequence/Sequence.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFactory.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFile.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFileGroup.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFormatException.class
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Statistics/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Statistics/NormalDistribution.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Statistics/PearsonCorrelation.class
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Utilities/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Utilities/CasavaBasename.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Utilities/HotColdColourGradient.class
drwxrwxr-x	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Utilities/ImageSaver/
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Utilities/ImageSaver/SVGGenerator$SVGGraphics.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Utilities/ImageSaver/SVGGenerator.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Utilities/ImageSaver/SVGImageSaver.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Utilities/ImageToBase64.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Utilities/MultiMemberGZIPInputStream.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Utilities/NameFormatException.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Utilities/NanoporeBasename.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Utilities/QualityCount.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/uk/ac/babraham/FastQC/Utilities/RGB.class
-rw-rw-r--	root/root	usr/lib/ugene/tools/fastqc/version.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/fasttree/
-rwxrwxr-x	root/root	usr/lib/ugene/tools/fasttree/FastTree
drwxrwxr-x	root/root	usr/lib/ugene/tools/hmmer3/
-rwxrwxr-x	root/root	usr/lib/ugene/tools/hmmer3/hmmbuild
-rwxrwxr-x	root/root	usr/lib/ugene/tools/hmmer3/hmmsearch
-rwxrwxr-x	root/root	usr/lib/ugene/tools/hmmer3/phmmer
-rw-rw-r--	root/root	usr/lib/ugene/tools/hmmer3/version.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/iqtree/
-rwxrwxr-x	root/root	usr/lib/ugene/tools/iqtree/iqtree
-rw-rw-r--	root/root	usr/lib/ugene/tools/iqtree/version.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/kalign/
-rwxrwxr-x	root/root	usr/lib/ugene/tools/kalign/kalign
-rw-rw-r--	root/root	usr/lib/ugene/tools/kalign/version.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/kraken2/
-rwxrwxr-x	root/root	usr/lib/ugene/tools/kraken2/classify
-rwxrwxr-x	root/root	usr/lib/ugene/tools/kraken2/kraken2
-rw-rw-r--	root/root	usr/lib/ugene/tools/kraken2/kraken2lib.pm
drwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/
drwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/
drwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/dvipdf
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/eps2eps
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/gs
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/gsbj
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/gsdj
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/gsdj500
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/gslj
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/gslp
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/gsnd
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/lprsetup.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/pdf2dsc
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/pdf2ps
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/pf2afm
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/pfbtopfa
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/pphs
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/printafm
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/ps2ascii
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/ps2epsi
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/ps2pdf
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/ps2pdf12
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/ps2pdf13
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/ps2pdf14
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/ps2pdfwr
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/ps2ps
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/ps2ps2
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/bin/unix-lpr.sh
drwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/
drwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/
drwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/
drwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/PDFA_def.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/PDFX_def.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/PM760p.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/PM760pl.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/PM820p.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/PM820pl.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/Stc670p.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/Stc670pl.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/Stc680p.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/Stc680pl.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/Stc740p.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/Stc740pl.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/Stc760p.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/Stc760pl.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/Stc777p.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/Stc777pl.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/Stp720p.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/Stp720pl.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/Stp870p.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/Stp870pl.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/acctest.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/align.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bj8.rpd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bj8gc12f.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bj8hg12f.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bj8oh06n.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bj8pa06n.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bj8pp12f.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bj8ts06n.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bjc6000a1.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bjc6000b1.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bjc610a0.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bjc610a1.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bjc610a2.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bjc610a3.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bjc610a4.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bjc610a5.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bjc610a6.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bjc610a7.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bjc610a8.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bjc610b1.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bjc610b2.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bjc610b3.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bjc610b4.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bjc610b6.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bjc610b7.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/bjc610b8.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/caption.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/cbjc600.ppd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/cbjc800.ppd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/cdj550.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/cdj690.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/cdj690ec.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/cid2code.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/dnj750c.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/dnj750m.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/docie.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/font2pcl.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/ghostpdf.ppd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_ce_e.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_css_e.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_il2_e.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_kanji.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_ksb_e.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_l.xbm
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_l.xpm
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_l_m.xbm
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_lgo_e.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_lgx_e.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_m.xbm
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_m.xpm
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_m_m.xbm
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_s.xbm
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_s.xpm
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_s_m.xbm
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_t.xbm
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_t.xpm
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_t_m.xbm
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_wl1_e.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_wl2_e.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gs_wl5_e.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gslp.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/gsnup.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/ht_ccsto.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/image-qa.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/jispaper.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/landscap.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/lines.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/mkcidfm.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/necp2x.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/necp2x6.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/pdf2dsc.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/pdf_info.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/pf2afm.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/pfbtopfa.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/ppath.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/pphs.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/prfont.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/printafm.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/ps2ai.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/ps2epsi.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/ras1.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/ras24.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/ras3.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/ras32.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/ras4.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/ras8m.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/rollconv.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/s400a1.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/s400b1.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/sharp.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/sipixa6.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/st640ih.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/st640ihg.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/st640p.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/st640pg.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/st640pl.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/st640plg.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stc.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stc1520h.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stc2.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stc200_h.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stc2_h.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stc2s_h.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stc300.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stc300bl.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stc300bm.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stc500p.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stc500ph.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stc600ih.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stc600p.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stc600pl.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stc640p.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stc740ih.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stc800ih.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stc800p.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stc800pl.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stc_h.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stc_l.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stcany.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stcany_h.upp
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stcinfo.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stcolor.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/stocht.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/traceimg.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/traceop.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/uninfo.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/viewcmyk.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/viewgif.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/viewjpeg.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/viewmiff.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/viewpbm.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/viewpcx.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/viewps2a.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/winmaps.ps
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/gs10.02.0/share/ghostscript/10.02.1/lib/zeroline.ps
drwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/
drwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/add_dHdSTm
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/add_dHdSTm2
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/auxgen
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/boxplot_ng
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/ct2bp
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/ct_boxplot_ng
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/ct_compare
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/distance
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/efn
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/efn2
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/filter-sort
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/h-num
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/h_num
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/mfold
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/mfold_datdir
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/mfold_quik
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/myps2img.bash
lrwxrwxrwx	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/myps2jpg.bash -> myps2img.bash
lrwxrwxrwx	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/myps2pdf.bash -> myps2img.bash
lrwxrwxrwx	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/myps2png.bash -> myps2img.bash
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/nafold
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/newtemp
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/overlay_boxplot_ng
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/quikfold
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/reformat-seq.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/sav2p_num
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/sav2plot
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/scorer
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/sir_graph
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/bin/ss_count
drwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/
drwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/Flower.gif
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/asint1x2.dat
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/asint1x2.dg
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/asint1x2.dgd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/asint1x2.dh
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/asint1x2.dhd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/asint2x3.dg
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/asint2x3.dgd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/asint2x3.dh
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/asint2x3.dhd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/back.gif
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/boxplot-3.0.col
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/boxplot.col
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/coaxial.dat
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/coaxstack.dat
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/ct_boxplot.col
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/dangle.dat
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/dangle.dg
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/dangle.dgd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/dangle.dh
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/dangle.dhd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/ddG.gif
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/end-break.gif
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/end2.gif
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/form1-doc.html
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/formats.html
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/green.gif
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/home.gif
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/int11.dat
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/int21.dat
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/int22.dat
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/l_blue.gif
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/l_brown.gif
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/l_cyan.gif
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/l_green.gif
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/l_grey.gif
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/l_purple.gif
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/l_red.gif
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/l_yellow.gif
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/loop.dat
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/loop.dg
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/loop.dgd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/loop.dh
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/loop.dhd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/mail.gif
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/mfold-server-credit-sm.gif
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/mfold-server-credit.gif
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/mfold5.gif
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/miscloop.dat
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/miscloop.dg
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/miscloop.dgd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/miscloop.dh
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/miscloop.dhd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/overlay_boxplot.col
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/rna.gif
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/shield_t.gif
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/sint2.dat
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/sint2.dg
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/sint2.dgd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/sint2.dh
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/sint2.dhd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/sint4.dat
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/sint4.dg
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/sint4.dgd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/sint4.dh
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/sint4.dhd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/sint6.dg
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/sint6.dgd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/sint6.dh
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/sint6.dhd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/sir_graph.1.col
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/sir_graph.col
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/split_ct.awk
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/stack.dat
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/stack.dg
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/stack.dgd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/stack.dh
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/stack.dhd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/tloop.dat
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/tloop.dg
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/tloop.dgd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/tloop.dh
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/tloop.dhd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/triloop.dat
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/triloop.dg
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/triloop.dgd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/triloop.dh
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/triloop.dhd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/tstack.dat
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/tstackcoax.dat
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/tstackh.dat
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/tstackh.dg
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/tstackh.dgd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/tstackh.dh
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/tstackh.dhd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/tstacki.dat
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/tstacki.dg
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/tstacki.dgd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/tstacki.dh
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/tstacki.dhd
-rw-rw-r--	root/root	usr/lib/ugene/tools/mfold/mfold-3.6/share/mfold/tstackm.dat
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mfold/mfold.sh
drwxrwxr-x	root/root	usr/lib/ugene/tools/mrbayes/
-rwxrwxr-x	root/root	usr/lib/ugene/tools/mrbayes/mb
-rw-rw-r--	root/root	usr/lib/ugene/tools/mrbayes/version.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/samtools/
-rwxrwxr-x	root/root	usr/lib/ugene/tools/samtools/bcftools
lrwxrwxrwx	root/root	usr/lib/ugene/tools/samtools/libncurses.so.5 -> libncurses.so.5.9
-rw-rw-r--	root/root	usr/lib/ugene/tools/samtools/libncurses.so.5.9
lrwxrwxrwx	root/root	usr/lib/ugene/tools/samtools/libtinfo.so.5 -> libtinfo.so.5.9
-rw-rw-r--	root/root	usr/lib/ugene/tools/samtools/libtinfo.so.5.9
-rwxrwxr-x	root/root	usr/lib/ugene/tools/samtools/samtools
-rwxrwxr-x	root/root	usr/lib/ugene/tools/samtools/samtools.orig
-rwxrwxr-x	root/root	usr/lib/ugene/tools/samtools/tabix
-rwxrwxr-x	root/root	usr/lib/ugene/tools/samtools/vcfutils.pl
-rw-rw-r--	root/root	usr/lib/ugene/tools/samtools/version.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/
drwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/examples/
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/1kg.head_chr1.filtered.vcf.gz
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/1kg.head_chr1.vcf.gz
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/cancer.ann.vcf
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/cancer.eff.vcf
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/cancer.vcf
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/cancer_pedigree.ann.vcf
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/cancer_pedigree.vcf
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/example_motif.vcf
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/examples/examples.sh
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/file.vcf
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/intervals.bed
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/my_annotations.bed
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/samples_cancer.txt
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/samples_cancer_one.txt
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/test.1KG.ann_encode.vcf
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/test.1KG.ann_reg.vcf
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/test.1KG.vcf
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/test.ann.vcf
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/test.chr22.ann.filter_missense.vcf
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/test.chr22.ann.filter_missense_any.vcf
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/test.chr22.ann.filter_missense_any_TRMT2A.vcf
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/test.chr22.ann.filter_missense_first.vcf
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/test.chr22.ann.one_per_line.txt
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/test.chr22.ann.txt
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/test.chr22.ann.vcf
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/test.chr22.vcf
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/test.vcf
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/variants_1.ann.vcf
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/variants_1.vcf
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/variants_2.ann.vcf
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/examples/variants_2.vcf
drwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/galaxy/
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/galaxy/snpEff.xml
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/galaxy/snpEffWrapper.pl
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/galaxy/snpEff_download.xml
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/galaxy/snpSiftWrapper.pl
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/galaxy/snpSift_annotate.xml
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/galaxy/snpSift_caseControl.xml
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/galaxy/snpSift_filter.xml
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/galaxy/snpSift_int.xml
drwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/galaxy/tool-data/
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/galaxy/tool-data/snpEff_genomes.loc
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/galaxy/tool-data/snpEff_genomes.loc.sample
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/galaxy/tool_conf.xml
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/galaxy/tool_dependencies.xml
drwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/1kg.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/annotate_demo.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/annotate_demo_GATK.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/bedEffOnePerLine.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/buildDbNcbi.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/cgShore.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/cgShore.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/countColumns.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/db.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/extractSequences.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/fasta2tab.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/fastaSample.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/fastaSplit.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/fastqSplit.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/filterBy.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/gffRemovePhase.pl
drwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/gsa/
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/gsa/bayesFactor_correction_scoreCount.r
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/gsa/bayesFactor_correction_scoreCount.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/gsa/bayesFactor_correction_scoreCount_max10.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/gsa/checkGeneNames.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/gsa/create_sets.bds
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/gsa/geneSetOverlap.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/scripts/gsa/geneSetOverlap.sort.txt
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/gsa/geneSetsGtex.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/scripts/gsa/pvalue_correction_scoreCount.r
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/gsa/pvalue_correction_scoreCount.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/gsa/pvalue_correction_scoreCount_min10.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/isutf8.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/join.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/joinSnpEff.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/make_dbNSFP.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/nextProt_filter.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/ped2vcf.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/plot.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/plotHistogram.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/plotLabel.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/plotMA.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/plotQQ.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/plotQQsubsample.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/plotSmoothScatter.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/plotXY.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/queue.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/sam2fastq.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/snpEff
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/snpSift_filter_sample_to_number.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/sortLine.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/splitChr.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/statsNum.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/swapCols.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/transpose.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/txt2fa.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/txt2vcf.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/uniqCount.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/uniqCut.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/vcfAnnFirst.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/vcfBareBones.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/vcfEffHighest.ORI.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/vcfEffOnePerLine.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/vcfFilterSamples.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/vcfInfoOnePerLine.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/vcfOnlyAlts.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/vcfReduceGenotypes.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/vcfRefCorrect.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/snpeff/scripts/wigSplit.pl
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/snpEff.config
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/snpEff.jar
-rw-rw-r--	root/root	usr/lib/ugene/tools/snpeff/version.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/bin/
-rwxrwxr-x	root/root	usr/lib/ugene/tools/spades/bin/cds-mapping-stats
-rwxrwxr-x	root/root	usr/lib/ugene/tools/spades/bin/cds-subgraphs
lrwxrwxrwx	root/root	usr/lib/ugene/tools/spades/bin/coronaspades.py -> spades.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/spades/bin/mag-improve
lrwxrwxrwx	root/root	usr/lib/ugene/tools/spades/bin/metaplasmidspades.py -> spades.py
lrwxrwxrwx	root/root	usr/lib/ugene/tools/spades/bin/metaspades.py -> spades.py
lrwxrwxrwx	root/root	usr/lib/ugene/tools/spades/bin/metaviralspades.py -> spades.py
lrwxrwxrwx	root/root	usr/lib/ugene/tools/spades/bin/plasmidspades.py -> spades.py
lrwxrwxrwx	root/root	usr/lib/ugene/tools/spades/bin/rnaspades.py -> spades.py
lrwxrwxrwx	root/root	usr/lib/ugene/tools/spades/bin/rnaviralspades.py -> spades.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/spades/bin/spades-bwa
-rwxrwxr-x	root/root	usr/lib/ugene/tools/spades/bin/spades-convert-bin-to-fasta
-rwxrwxr-x	root/root	usr/lib/ugene/tools/spades/bin/spades-core
-rwxrwxr-x	root/root	usr/lib/ugene/tools/spades/bin/spades-corrector-core
-rwxrwxr-x	root/root	usr/lib/ugene/tools/spades/bin/spades-gbuilder
-rwxrwxr-x	root/root	usr/lib/ugene/tools/spades/bin/spades-gmapper
-rwxrwxr-x	root/root	usr/lib/ugene/tools/spades/bin/spades-gsimplifier
-rwxrwxr-x	root/root	usr/lib/ugene/tools/spades/bin/spades-hammer
-rwxrwxr-x	root/root	usr/lib/ugene/tools/spades/bin/spades-ionhammer
-rwxrwxr-x	root/root	usr/lib/ugene/tools/spades/bin/spades-kmer-estimating
-rwxrwxr-x	root/root	usr/lib/ugene/tools/spades/bin/spades-kmercount
-rwxrwxr-x	root/root	usr/lib/ugene/tools/spades/bin/spades-read-filter
-rwxrwxr-x	root/root	usr/lib/ugene/tools/spades/bin/spades-truseq-scfcorrection
-rwxrwxr-x	root/root	usr/lib/ugene/tools/spades/bin/spades.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/bin/spades_init.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/spades/bin/spaligner
-rwxrwxr-x	root/root	usr/lib/ugene/tools/spades/bin/truspades.py
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spades/
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/GPLv2.txt
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/LICENSE
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/README.md
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/VERSION
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spades/biosynthetic_spades_hmms/
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/biosynthetic_spades_hmms/AMP.hmm.gz
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/biosynthetic_spades_hmms/AT.hmm.gz
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/biosynthetic_spades_hmms/CStart.hmm.gz
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/biosynthetic_spades_hmms/KR.hmm.gz
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/biosynthetic_spades_hmms/KS.hmm.gz
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/biosynthetic_spades_hmms/TE.hmm.gz
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spades/configs/
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spades/configs/corrector/
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/corrector/corrector.info
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/bgc_mode.info
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/careful_mda_mode.info
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/careful_mode.info
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/config.info
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/construction.info
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/detail_info_printer.info
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/distance_estimation.info
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/hmm_mode.info
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/isolate_mode.info
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/large_genome_mode.info
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/mda_mode.info
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/meta_mode.info
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/metaplasmid_mode.info
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/metaviral_mode.info
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/moleculo_mode.info
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/pe_params.info
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/plasmid_mode.info
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/rna_mode.info
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/rnaviral_mode.info
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/simplification.info
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/toy.info
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/debruijn/tsa.info
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spades/configs/hammer/
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/hammer/config.info
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spades/configs/ionhammer/
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/configs/ionhammer/ionhammer.cfg
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spades/coronaspades_hmms/
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/coronaspades_hmms/Pfam-A.SARS-CoV-2.hmm.gz
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/coronaspades_hmms/Phan-CoV.hmm.gz
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spades/joblib2/
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib2/__init__.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib2/disk.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib2/format_stack.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib2/func_inspect.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib2/functools.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib2/hashing.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib2/logger.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib2/memory.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib2/my_exceptions.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib2/numpy_pickle.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib2/parallel.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib2/testing.py
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spades/joblib3/
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib3/__init__.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib3/_compat.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib3/_memory_helpers.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib3/_multiprocessing_helpers.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib3/disk.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib3/format_stack.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib3/func_inspect.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib3/hashing.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib3/logger.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib3/memory.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib3/my_exceptions.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib3/numpy_pickle.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib3/parallel.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib3/pool.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/joblib3/testing.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/manual.html
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml2/
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml2/__init__.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml2/composer.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml2/constructor.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml2/cyaml.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml2/dumper.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml2/emitter.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml2/error.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml2/events.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml2/loader.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml2/nodes.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml2/parser.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml2/reader.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml2/representer.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml2/resolver.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml2/scanner.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml2/serializer.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml2/tokens.py
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml3/
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml3/__init__.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml3/composer.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml3/constructor.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml3/cyaml.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml3/dumper.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml3/emitter.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml3/error.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml3/events.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml3/loader.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml3/nodes.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml3/parser.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml3/reader.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml3/representer.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml3/resolver.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml3/scanner.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml3/serializer.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/pyyaml3/tokens.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/rnaspades_manual.html
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/commands_parser.py
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/common/
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/common/SeqIO.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/common/__init__.py (EMPTY)
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/common/alignment.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/common/parallel_launcher.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/common/sam_parser.py
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/executors/
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/executors/executor_local.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/executors/executor_save_yaml.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/executors/executors.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/lucigen_nxmate.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/options_parser.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/options_storage.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/process_cfg.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/run_contig_breaker.py
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/scripts/
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/scripts/breaking_scaffolds_script.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/scripts/check_test_script.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/scripts/compress_all.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/scripts/copy_files.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/scripts/correction_iteration_script.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/scripts/plasmid_glue.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/scripts/postprocessing_script.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/scripts/preprocess_contigs.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/scripts/preprocess_interlaced_reads.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/scripts/preprocess_nxmate_reads.py
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/stages/
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/stages/__init__.py (EMPTY)
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/stages/before_start_stage.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/stages/breaking_scaffolds_stage.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/stages/check_test_stage.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/stages/correction_stage.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/stages/error_correction_stage.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/stages/pipeline.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/stages/postprocessing_stage.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/stages/preprocess_reads_stage.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/stages/scaffold_correction_stage.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/stages/spades_iteration_stage.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/stages/spades_stage.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/stages/stage.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/stages/terminating_stage.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/support.py
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/truspades/
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/truspades/__init__.py (EMPTY)
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/truspades/barcode_extraction.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/truspades/break_by_coverage.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/truspades/generate_quality.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/truspades/id_generation.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/truspades/launch_options.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/truspades/moleculo_filter_contigs.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/truspades/moleculo_postprocessing.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/truspades/reference_construction.py
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/spades_pipeline/truspades/string_dist_utils.py
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spades/test_dataset/
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/test_dataset/ecoli_1K_1.fq.gz
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/test_dataset/ecoli_1K_2.fq.gz
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/test_dataset/genes_1K.gff
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/test_dataset/genes_1K.txt
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/test_dataset/operons_1K.gff
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/test_dataset/operons_1K.txt
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/test_dataset/reference_1K.fa.gz
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spades/test_dataset_plasmid/
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/test_dataset_plasmid/pl1.fq.gz
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/test_dataset_plasmid/pl2.fq.gz
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spades/test_dataset_truspades/
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/test_dataset_truspades/A_R1.fastq.gz
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/test_dataset_truspades/A_R2.fastq.gz
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/test_dataset_truspades/B_R1.fastq.gz
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/test_dataset_truspades/B_R2.fastq.gz
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spades/truspades_manual.html
drwxrwxr-x	root/root	usr/lib/ugene/tools/spades/share/spaligner/
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/share/spaligner/spaligner_config.yaml
-rw-rw-r--	root/root	usr/lib/ugene/tools/spades/version.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/spidey/
-rwxrwxr-x	root/root	usr/lib/ugene/tools/spidey/spidey
-rw-rw-r--	root/root	usr/lib/ugene/tools/spidey/version.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/stringtie/
-rw-rw-r--	root/root	usr/lib/ugene/tools/stringtie/LICENSE
-rw-rw-r--	root/root	usr/lib/ugene/tools/stringtie/README
-rwxrwxr-x	root/root	usr/lib/ugene/tools/stringtie/stringtie
-rw-rw-r--	root/root	usr/lib/ugene/tools/stringtie/version.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/
-rw-rw-r--	root/root	usr/lib/ugene/tools/tophat2/AUTHORS
-rw-rw-r--	root/root	usr/lib/ugene/tools/tophat2/LICENSE
-rw-rw-r--	root/root	usr/lib/ugene/tools/tophat2/README
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bam2fastx
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bam_merge
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bed_to_juncs
drwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie1/
-rw-rw-r--	root/root	usr/lib/ugene/tools/tophat2/bowtie1/AUTHORS
-rw-rw-r--	root/root	usr/lib/ugene/tools/tophat2/bowtie1/LICENSE
-rw-rw-r--	root/root	usr/lib/ugene/tools/tophat2/bowtie1/MANUAL
-rw-rw-r--	root/root	usr/lib/ugene/tools/tophat2/bowtie1/MANUAL.markdown
-rw-rw-r--	root/root	usr/lib/ugene/tools/tophat2/bowtie1/NEWS
-rw-rw-r--	root/root	usr/lib/ugene/tools/tophat2/bowtie1/TUTORIAL
-rw-rw-r--	root/root	usr/lib/ugene/tools/tophat2/bowtie1/VERSION
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie1/bowtie
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie1/bowtie-build
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie1/bowtie-inspect
drwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/
-rw-rw-r--	root/root	usr/lib/ugene/tools/tophat2/bowtie2/AUTHORS
-rw-rw-r--	root/root	usr/lib/ugene/tools/tophat2/bowtie2/LICENSE
-rw-rw-r--	root/root	usr/lib/ugene/tools/tophat2/bowtie2/MANUAL
-rw-rw-r--	root/root	usr/lib/ugene/tools/tophat2/bowtie2/MANUAL.markdown
-rw-rw-r--	root/root	usr/lib/ugene/tools/tophat2/bowtie2/NEWS
-rw-rw-r--	root/root	usr/lib/ugene/tools/tophat2/bowtie2/TUTORIAL
-rw-rw-r--	root/root	usr/lib/ugene/tools/tophat2/bowtie2/VERSION
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/bowtie2
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/bowtie2-align-l
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/bowtie2-align-s
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/bowtie2-build
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/bowtie2-build-l
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/bowtie2-build-s
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/bowtie2-inspect
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/bowtie2-inspect-l
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/bowtie2-inspect-s
drwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/scripts/
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/scripts/convert_quals.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/scripts/gen_2b_occ_lookup.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/scripts/gen_occ_lookup.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/scripts/gen_solqual_lookup.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/scripts/infer_fraglen.pl
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/scripts/make_a_thaliana_tair.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/scripts/make_b_taurus_UMD3.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/scripts/make_c_elegans.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/scripts/make_canFam2.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/scripts/make_d_melanogaster.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/scripts/make_e_coli.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/scripts/make_h_sapiens_ncbi36.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/scripts/make_h_sapiens_ncbi37.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/scripts/make_hg18.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/scripts/make_hg19.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/scripts/make_m_musculus_ncbi37.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/scripts/make_mm10.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/scripts/make_mm9.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/scripts/make_rn4.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/bowtie2/scripts/make_s_cerevisiae.sh
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/contig_to_chr_coords
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/fix_map_ordering
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/gtf_juncs
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/gtf_to_fasta
drwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/intervaltree/
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/intervaltree/__init__.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/intervaltree/interval.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/intervaltree/intervaltree.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/intervaltree/node.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/juncs_db
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/long_spanning_reads
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/map2gtf
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/prep_reads
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/sam_juncs
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/samtools_0.1.18
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/segment_juncs
drwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/sortedcontainers/
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/sortedcontainers/__init__.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/sortedcontainers/sorteddict.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/sortedcontainers/sortedlist.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/sortedcontainers/sortedlistwithkey.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/sortedcontainers/sortedset.py
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/sra_to_solid
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/tophat
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/tophat-fusion-post
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/tophat2
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/tophat_2
-rwxrwxr-x	root/root	usr/lib/ugene/tools/tophat2/tophat_reports
-rw-rw-r--	root/root	usr/lib/ugene/tools/tophat2/version.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/trimmomatic/
-rw-rw-r--	root/root	usr/lib/ugene/tools/trimmomatic/LICENSE
-rw-rw-r--	root/root	usr/lib/ugene/tools/trimmomatic/trimmomatic.jar
-rw-rw-r--	root/root	usr/lib/ugene/tools/trimmomatic/version.txt
drwxrwxr-x	root/root	usr/lib/ugene/tools/vcftools/
-rw-rw-r--	root/root	usr/lib/ugene/tools/vcftools/Vcf.pm
-rwxrwxr-x	root/root	usr/lib/ugene/tools/vcftools/vcf-consensus
-rw-rw-r--	root/root	usr/lib/ugene/tools/vcftools/version.txt
-rw-r--r--	root/root	usr/lib/ugene/transl_ru.qm
-rw-r--r--	root/root	usr/lib/ugene/transl_tr.qm
-rwxr-xr-x	root/root	usr/lib/ugene/ugene
-rw-r--r--	root/root	usr/lib/ugene/ugene.png
-rwxr-xr-x	root/root	usr/lib/ugene/ugenecl
-rwxr-xr-x	root/root	usr/lib/ugene/ugenem
-rwxr-xr-x	root/root	usr/lib/ugene/ugeneui
drwxr-xr-x	root/root	usr/lib/ugene/xcbglintegrations/
-rwxr-xr-x	root/root	usr/lib/ugene/xcbglintegrations/libqxcb-egl-integration.so
-rwxr-xr-x	root/root	usr/lib/ugene/xcbglintegrations/libqxcb-glx-integration.so
drwxr-xr-x	root/root	usr/share/
drwxr-xr-x	root/root	usr/share/applications/
-rw-r--r--	root/root	usr/share/applications/ugene.desktop
drwxr-xr-x	root/root	usr/share/pixmaps/
-rw-r--r--	root/root	usr/share/pixmaps/ugene.png