# Description: A unified bioinformatics toolkit
# URL: http://ugene.net/
# Maintainer: Petar Petrov, slackalaxy at gmail dot com
# Depends on: brotli double-conversion graphite2 icu keyutils krb5 qt5 xorg-libxtst

name=ugene
version=50.0
release=1
source=(https://github.com/ugeneunipro/$name/archive/${version}/$name-$version.tar.gz)

build() {
	cd $name-$version
	qmake-qt5 -r CONFIG+=x64 PREFIX=/usr/lib/$name \
	QMAKE_CFLAGS="$CFLAGS" \
	QMAKE_CXXFLAGS="$CXXCFLAGS" \
	UGENE_EXCLUDE_LIST_ENABLED=1
	make
	
	# Apparently, this has to be done twice to generate the right installation files
	# https://github.com/ugeneunipro/ugene/issues/683#issuecomment-1046370388
	qmake-qt5 -r CONFIG+=x64 PREFIX=/usr/lib/$name \
	QMAKE_CFLAGS="$CFLAGS" \
	QMAKE_CXXFLAGS="$CXXCFLAGS" \
	UGENE_EXCLUDE_LIST_ENABLED=1
	make
	
	make INSTALL_ROOT=$PKG install
	
	mkdir -p $PKG/usr/bin
	cd $PKG/usr/bin
	ln -s ../lib/$name/$name .
	
	mkdir -p $PKG/usr/share/{applications,pixmaps}
	mv $PKG/usr/lib/$name/$name.desktop $PKG/usr/share/applications
	mv $PKG/usr/lib/$name/$name.png $PKG/usr/share/pixmaps
	
	# Do not associate with my fasta files...
	sed -i '/MimeType/d' $PKG/usr/share/applications/$name.desktop
}