drwxr-xr-x root/root usr/ drwxr-xr-x root/root usr/lib/ drwxr-xr-x root/root usr/lib/R/ drwxr-xr-x root/root usr/lib/R/library/ drwxr-xr-x root/root usr/lib/R/library/BiocNeighbors/ -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/DESCRIPTION -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/INDEX drwxr-xr-x root/root usr/lib/R/library/BiocNeighbors/Meta/ -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/Meta/Rd.rds -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/Meta/features.rds -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/Meta/hsearch.rds -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/Meta/links.rds -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/Meta/nsInfo.rds -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/Meta/package.rds -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/Meta/vignette.rds -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/NAMESPACE -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/NEWS.Rd drwxr-xr-x root/root usr/lib/R/library/BiocNeighbors/R/ -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/R/BiocNeighbors -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/R/BiocNeighbors.rdb -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/R/BiocNeighbors.rdx drwxr-xr-x root/root usr/lib/R/library/BiocNeighbors/doc/ -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/doc/approx.R -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/doc/approx.Rmd -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/doc/approx.html -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/doc/exact.R -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/doc/exact.Rmd -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/doc/exact.html -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/doc/index.html -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/doc/range.R -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/doc/range.Rmd -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/doc/range.html drwxr-xr-x root/root usr/lib/R/library/BiocNeighbors/help/ -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/help/AnIndex -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/help/BiocNeighbors.rdb -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/help/BiocNeighbors.rdx -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/help/aliases.rds -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/help/paths.rds drwxr-xr-x root/root usr/lib/R/library/BiocNeighbors/html/ -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/html/00Index.html -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/html/R.css drwxr-xr-x root/root usr/lib/R/library/BiocNeighbors/include/ drwxr-xr-x root/root usr/lib/R/library/BiocNeighbors/include/aarand/ -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/aarand/aarand.hpp drwxr-xr-x root/root usr/lib/R/library/BiocNeighbors/include/annoy/ -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/annoy/annoylib.h -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/annoy/kissrandom.h -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/annoy/mman.h drwxr-xr-x root/root usr/lib/R/library/BiocNeighbors/include/hnswlib/ -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/hnswlib/bruteforce.h -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/hnswlib/hnswalg.h -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/hnswlib/hnswlib.h -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/hnswlib/space_ip.h -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/hnswlib/space_l2.h -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/hnswlib/visited_list_pool.h drwxr-xr-x root/root usr/lib/R/library/BiocNeighbors/include/kmeans/ -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/kmeans/Base.hpp -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/kmeans/Details.hpp -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/kmeans/HartiganWong.hpp -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/kmeans/InitializeKmeansPP.hpp -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/kmeans/InitializeNone.hpp -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/kmeans/InitializePCAPartition.hpp -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/kmeans/InitializeRandom.hpp -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/kmeans/Kmeans.hpp -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/kmeans/Lloyd.hpp -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/kmeans/MiniBatch.hpp -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/kmeans/QuickSearch.hpp -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/kmeans/compute_centroids.hpp -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/kmeans/compute_wcss.hpp -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/kmeans/is_edge_case.hpp -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/kmeans/random.hpp drwxr-xr-x root/root usr/lib/R/library/BiocNeighbors/include/knncolle/ drwxr-xr-x root/root usr/lib/R/library/BiocNeighbors/include/knncolle/Annoy/ -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/knncolle/Annoy/Annoy.hpp drwxr-xr-x root/root usr/lib/R/library/BiocNeighbors/include/knncolle/BruteForce/ -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/knncolle/BruteForce/BruteForce.hpp drwxr-xr-x root/root usr/lib/R/library/BiocNeighbors/include/knncolle/Hnsw/ -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/knncolle/Hnsw/Hnsw.hpp drwxr-xr-x root/root usr/lib/R/library/BiocNeighbors/include/knncolle/Kmknn/ -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/knncolle/Kmknn/Kmknn.hpp drwxr-xr-x root/root usr/lib/R/library/BiocNeighbors/include/knncolle/VpTree/ -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/knncolle/VpTree/VpTree.hpp -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/knncolle/knncolle.hpp drwxr-xr-x root/root usr/lib/R/library/BiocNeighbors/include/knncolle/utils/ -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/knncolle/utils/Base.hpp -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/knncolle/utils/NeighborQueue.hpp -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/knncolle/utils/distances.hpp -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/knncolle/utils/find_nearest_neighbors.hpp drwxr-xr-x root/root usr/lib/R/library/BiocNeighbors/include/powerit/ -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/powerit/PowerIterations.hpp -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/include/source.sh drwxr-xr-x root/root usr/lib/R/library/BiocNeighbors/libs/ -rwxr-xr-x root/root usr/lib/R/library/BiocNeighbors/libs/BiocNeighbors.so -rw-r--r-- root/root usr/lib/R/library/BiocNeighbors/transplant.R