# Description: R module BSgenome
# URL: https://cran.r-project.org/web/packages/BSgenome
# Maintainer: Petar Petrov, slackalaxy at gmail dot com
# Depends on: r r4-biocgenerics r4-biocio r4-biostrings r4-genomeinfodb r4-genomicranges r4-iranges r4-matrixstats r4-rsamtools r4-rtracklayer r4-s4vectors r4-xvector
# Optional: r4-biocmanager r4-bsgenome-celegans-ucsc-ce2 r4-bsgenome-hsapiens-ncbi-grch38 r4-bsgenome-hsapiens-ucsc-hg38 r4-bsgenome-hsapiens-ucsc-hg38-masked r4-bsgenome-mmusculus-ucsc-mm10 r4-bsgenome-rnorvegicus-ucsc-rn5 r4-bsgenome-scerevisiae-ucsc-saccer1 r4-bsgenomeforge r4-hgu95av2probe r4-runit r4-snplocs-hsapiens-dbsnp144-grch38 r4-txdb-hsapiens-ucsc-hg38-knowngene r4-txdb-mmusculus-ucsc-mm10-knowngene r4-xtrasnplocs-hsapiens-dbsnp144-grch38

name=r4-bsgenome
version=1.72.0
release=1
source=(https://bioconductor.org/packages/3.19/bioc/src/contrib/BSgenome_${version}.tar.gz)

build() {
	cd BSgenome
	mkdir -p $PKG/usr/lib/R/library
	R CMD INSTALL . -l $PKG/usr/lib/R/library
}