drwxr-xr-x root/root usr/ drwxr-xr-x root/root usr/lib/ drwxr-xr-x root/root usr/lib/R/ drwxr-xr-x root/root usr/lib/R/library/ drwxr-xr-x root/root usr/lib/R/library/msa/ -rw-r--r-- root/root usr/lib/R/library/msa/CITATION -rw-r--r-- root/root usr/lib/R/library/msa/COPYRIGHT -rw-r--r-- root/root usr/lib/R/library/msa/DESCRIPTION -rw-r--r-- root/root usr/lib/R/library/msa/INDEX drwxr-xr-x root/root usr/lib/R/library/msa/Meta/ -rw-r--r-- root/root usr/lib/R/library/msa/Meta/Rd.rds -rw-r--r-- root/root usr/lib/R/library/msa/Meta/features.rds -rw-r--r-- root/root usr/lib/R/library/msa/Meta/hsearch.rds -rw-r--r-- root/root usr/lib/R/library/msa/Meta/links.rds -rw-r--r-- root/root usr/lib/R/library/msa/Meta/nsInfo.rds -rw-r--r-- root/root usr/lib/R/library/msa/Meta/package.rds -rw-r--r-- root/root usr/lib/R/library/msa/Meta/vignette.rds -rw-r--r-- root/root usr/lib/R/library/msa/NAMESPACE -rw-r--r-- root/root usr/lib/R/library/msa/NEWS drwxr-xr-x root/root usr/lib/R/library/msa/R/ -rw-r--r-- root/root usr/lib/R/library/msa/R/msa -rw-r--r-- root/root usr/lib/R/library/msa/R/msa.rdb -rw-r--r-- root/root usr/lib/R/library/msa/R/msa.rdx drwxr-xr-x root/root usr/lib/R/library/msa/doc/ -rw-r--r-- root/root usr/lib/R/library/msa/doc/index.html -rw-r--r-- root/root usr/lib/R/library/msa/doc/msa.R -rw-r--r-- root/root usr/lib/R/library/msa/doc/msa.Rnw -rw-r--r-- root/root usr/lib/R/library/msa/doc/msa.pdf drwxr-xr-x root/root usr/lib/R/library/msa/examples/ -rw-r--r-- root/root usr/lib/R/library/msa/examples/HemoglobinAA.fasta -rw-r--r-- root/root usr/lib/R/library/msa/examples/exampleAA.fasta -rw-r--r-- root/root usr/lib/R/library/msa/examples/exampleDNA.fasta -rw-r--r-- root/root usr/lib/R/library/msa/examples/exampleRNA.fasta drwxr-xr-x root/root usr/lib/R/library/msa/extdata/ -rw-r--r-- root/root usr/lib/R/library/msa/extdata/msaClustalOmegaHelp.txt -rw-r--r-- root/root usr/lib/R/library/msa/extdata/msaClustalWHelp.txt -rw-r--r-- root/root usr/lib/R/library/msa/extdata/msaCommonHelp.txt -rw-r--r-- root/root usr/lib/R/library/msa/extdata/msaHelpPrefix.txt -rw-r--r-- root/root usr/lib/R/library/msa/extdata/msaMuscleHelp.txt drwxr-xr-x root/root usr/lib/R/library/msa/help/ -rw-r--r-- root/root usr/lib/R/library/msa/help/AnIndex -rw-r--r-- root/root usr/lib/R/library/msa/help/aliases.rds -rw-r--r-- root/root usr/lib/R/library/msa/help/msa.rdb -rw-r--r-- root/root usr/lib/R/library/msa/help/msa.rdx -rw-r--r-- root/root usr/lib/R/library/msa/help/paths.rds drwxr-xr-x root/root usr/lib/R/library/msa/html/ -rw-r--r-- root/root usr/lib/R/library/msa/html/00Index.html -rw-r--r-- root/root usr/lib/R/library/msa/html/R.css drwxr-xr-x root/root usr/lib/R/library/msa/libs/ -rwxr-xr-x root/root usr/lib/R/library/msa/libs/msa.so drwxr-xr-x root/root usr/lib/R/library/msa/tex/ -rw-r--r-- root/root usr/lib/R/library/msa/tex/ciliate.cod -rw-r--r-- root/root usr/lib/R/library/msa/tex/standard.cod -rw-r--r-- root/root usr/lib/R/library/msa/tex/texshade.sty