drwxr-xr-x root/root usr/ drwxr-xr-x root/root usr/lib/ drwxr-xr-x root/root usr/lib/R/ drwxr-xr-x root/root usr/lib/R/library/ drwxr-xr-x root/root usr/lib/R/library/rtracklayer/ -rw-r--r-- root/root usr/lib/R/library/rtracklayer/CITATION -rw-r--r-- root/root usr/lib/R/library/rtracklayer/DESCRIPTION -rw-r--r-- root/root usr/lib/R/library/rtracklayer/INDEX -rw-r--r-- root/root usr/lib/R/library/rtracklayer/LICENSE drwxr-xr-x root/root usr/lib/R/library/rtracklayer/Meta/ -rw-r--r-- root/root usr/lib/R/library/rtracklayer/Meta/Rd.rds -rw-r--r-- root/root usr/lib/R/library/rtracklayer/Meta/data.rds -rw-r--r-- root/root usr/lib/R/library/rtracklayer/Meta/demo.rds -rw-r--r-- root/root usr/lib/R/library/rtracklayer/Meta/features.rds -rw-r--r-- root/root usr/lib/R/library/rtracklayer/Meta/hsearch.rds -rw-r--r-- root/root usr/lib/R/library/rtracklayer/Meta/links.rds -rw-r--r-- root/root usr/lib/R/library/rtracklayer/Meta/nsInfo.rds -rw-r--r-- root/root usr/lib/R/library/rtracklayer/Meta/package.rds -rw-r--r-- root/root usr/lib/R/library/rtracklayer/Meta/vignette.rds -rw-r--r-- root/root usr/lib/R/library/rtracklayer/NAMESPACE -rw-r--r-- root/root usr/lib/R/library/rtracklayer/NEWS drwxr-xr-x root/root usr/lib/R/library/rtracklayer/R/ -rw-r--r-- root/root usr/lib/R/library/rtracklayer/R/rtracklayer -rw-r--r-- root/root usr/lib/R/library/rtracklayer/R/rtracklayer.rdb -rw-r--r-- root/root usr/lib/R/library/rtracklayer/R/rtracklayer.rdx drwxr-xr-x root/root usr/lib/R/library/rtracklayer/data/ -rw-r--r-- root/root usr/lib/R/library/rtracklayer/data/cpneTrack.rda -rw-r--r-- root/root usr/lib/R/library/rtracklayer/data/targets.rda drwxr-xr-x root/root usr/lib/R/library/rtracklayer/demo/ -rw-r--r-- root/root usr/lib/R/library/rtracklayer/demo/targets.R drwxr-xr-x root/root usr/lib/R/library/rtracklayer/doc/ -rw-r--r-- root/root usr/lib/R/library/rtracklayer/doc/index.html -rw-r--r-- root/root usr/lib/R/library/rtracklayer/doc/rtracklayer.R -rw-r--r-- root/root usr/lib/R/library/rtracklayer/doc/rtracklayer.Rnw -rw-r--r-- root/root usr/lib/R/library/rtracklayer/doc/rtracklayer.pdf drwxr-xr-x root/root usr/lib/R/library/rtracklayer/extdata/ -rw-r--r-- root/root usr/lib/R/library/rtracklayer/extdata/demo.narrowPeak.gz drwxr-xr-x root/root usr/lib/R/library/rtracklayer/help/ -rw-r--r-- root/root usr/lib/R/library/rtracklayer/help/AnIndex -rw-r--r-- root/root usr/lib/R/library/rtracklayer/help/aliases.rds -rw-r--r-- root/root usr/lib/R/library/rtracklayer/help/paths.rds -rw-r--r-- root/root usr/lib/R/library/rtracklayer/help/rtracklayer.rdb -rw-r--r-- root/root usr/lib/R/library/rtracklayer/help/rtracklayer.rdx drwxr-xr-x root/root usr/lib/R/library/rtracklayer/html/ -rw-r--r-- root/root usr/lib/R/library/rtracklayer/html/00Index.html -rw-r--r-- root/root usr/lib/R/library/rtracklayer/html/R.css drwxr-xr-x root/root usr/lib/R/library/rtracklayer/libs/ -rwxr-xr-x root/root usr/lib/R/library/rtracklayer/libs/rtracklayer.so drwxr-xr-x root/root usr/lib/R/library/rtracklayer/notes/ -rw-r--r-- root/root usr/lib/R/library/rtracklayer/notes/design.org -rw-r--r-- root/root usr/lib/R/library/rtracklayer/notes/requirements.tex -rw-r--r-- root/root usr/lib/R/library/rtracklayer/notes/use-cases.tex drwxr-xr-x root/root usr/lib/R/library/rtracklayer/scripts/ -rw-r--r-- root/root usr/lib/R/library/rtracklayer/scripts/cpneTrack.R -rw-r--r-- root/root usr/lib/R/library/rtracklayer/scripts/twobit.R drwxr-xr-x root/root usr/lib/R/library/rtracklayer/tests/ -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/bed.bw -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/bed.wig -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/genes.gff3 -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/gtf.gff -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/multi.wig drwxr-xr-x root/root usr/lib/R/library/rtracklayer/tests/quickload/ drwxr-xr-x root/root usr/lib/R/library/rtracklayer/tests/quickload/T_species_Oct_2011/ -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/quickload/T_species_Oct_2011/T_species_Oct_2011.2bit -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/quickload/T_species_Oct_2011/annots.xml -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/quickload/T_species_Oct_2011/bedData.bed.gz -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/quickload/T_species_Oct_2011/bedData.bed.gz.tbi -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/quickload/T_species_Oct_2011/bedGraphData.bw (EMPTY) -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/quickload/T_species_Oct_2011/mod_chromInfo.txt -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/quickload/contents.txt -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/step.wig -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/test.2bit -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/test.R -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/test.bb -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/test.bed -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/test.bed15 -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/test.bedGraph -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/test.bedpe -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/test.bw -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/test.gtf -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/test.xmfa drwxr-xr-x root/root usr/lib/R/library/rtracklayer/tests/trackhub/ -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/trackhub/genomes.txt drwxr-xr-x root/root usr/lib/R/library/rtracklayer/tests/trackhub/hg19/ -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/trackhub/hg19/trackDb.txt -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/trackhub/hg19/wgEncodeUWDukeDnaseGM12878.fdr01peaks.hg19.bb -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/trackhub/hub.txt -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/v1.gff -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/v2.gff -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/v3.gff -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/variableStep.bw -rw-r--r-- root/root usr/lib/R/library/rtracklayer/tests/variableStep.wig drwxr-xr-x root/root usr/lib/R/library/rtracklayer/unitTests/ -rw-r--r-- root/root usr/lib/R/library/rtracklayer/unitTests/test_bb.R -rw-r--r-- root/root usr/lib/R/library/rtracklayer/unitTests/test_bed.R -rw-r--r-- root/root usr/lib/R/library/rtracklayer/unitTests/test_bedGraph.R -rw-r--r-- root/root usr/lib/R/library/rtracklayer/unitTests/test_bw.R -rw-r--r-- root/root usr/lib/R/library/rtracklayer/unitTests/test_gff.R -rw-r--r-- root/root usr/lib/R/library/rtracklayer/unitTests/test_trackhub.R -rw-r--r-- root/root usr/lib/R/library/rtracklayer/unitTests/test_twoBit.R -rw-r--r-- root/root usr/lib/R/library/rtracklayer/unitTests/test_ucsc.R -rw-r--r-- root/root usr/lib/R/library/rtracklayer/unitTests/test_wig.R