drwxr-xr-x root/root usr/ drwxr-xr-x root/root usr/lib/ drwxr-xr-x root/root usr/lib/R/ drwxr-xr-x root/root usr/lib/R/library/ drwxr-xr-x root/root usr/lib/R/library/BiocPkgTools/ -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/DESCRIPTION -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/INDEX -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/LICENSE drwxr-xr-x root/root usr/lib/R/library/BiocPkgTools/Meta/ -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/Meta/Rd.rds -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/Meta/features.rds -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/Meta/hsearch.rds -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/Meta/links.rds -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/Meta/nsInfo.rds -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/Meta/package.rds -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/Meta/vignette.rds -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/NAMESPACE -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/NEWS drwxr-xr-x root/root usr/lib/R/library/BiocPkgTools/R/ -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/R/BiocPkgTools -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/R/BiocPkgTools.rdb -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/R/BiocPkgTools.rdx -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/README.md drwxr-xr-x root/root usr/lib/R/library/BiocPkgTools/doc/ -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/doc/BiocPkgTools.R -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/doc/BiocPkgTools.Rmd -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/doc/BiocPkgTools.html -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/doc/index.html drwxr-xr-x root/root usr/lib/R/library/BiocPkgTools/help/ -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/help/AnIndex -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/help/BiocPkgTools.rdb -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/help/BiocPkgTools.rdx -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/help/aliases.rds -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/help/paths.rds drwxr-xr-x root/root usr/lib/R/library/BiocPkgTools/html/ -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/html/00Index.html -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/html/R.css drwxr-xr-x root/root usr/lib/R/library/BiocPkgTools/htmlwidgets/ -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/htmlwidgets/bioc_explore.js -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/htmlwidgets/bioc_explore.yaml drwxr-xr-x root/root usr/lib/R/library/BiocPkgTools/htmlwidgets/lib/ drwxr-xr-x root/root usr/lib/R/library/BiocPkgTools/htmlwidgets/lib/bioc_explore/ -rwxr-xr-x root/root usr/lib/R/library/BiocPkgTools/htmlwidgets/lib/bioc_explore/bioc_explore.css -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/htmlwidgets/lib/bioc_explore/bootstrap.min.css -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/htmlwidgets/lib/bioc_explore/bootstrap.min.js -rwxr-xr-x root/root usr/lib/R/library/BiocPkgTools/htmlwidgets/lib/bioc_explore/bubblechart.js -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/htmlwidgets/lib/bioc_explore/d3.v3.min.js -rwxr-xr-x root/root usr/lib/R/library/BiocPkgTools/htmlwidgets/lib/bioc_explore/index.html -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/htmlwidgets/lib/bioc_explore/jquery-2.2.4.min.js -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/htmlwidgets/lib/bioc_explore/underscore-min.js drwxr-xr-x root/root usr/lib/R/library/BiocPkgTools/htmlwidgets/lib/fonts/ -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/htmlwidgets/lib/fonts/glyphicons-halflings-regular.eot -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/htmlwidgets/lib/fonts/glyphicons-halflings-regular.svg -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/htmlwidgets/lib/fonts/glyphicons-halflings-regular.ttf -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/htmlwidgets/lib/fonts/glyphicons-halflings-regular.woff -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/htmlwidgets/lib/fonts/glyphicons-halflings-regular.woff2 drwxr-xr-x root/root usr/lib/R/library/BiocPkgTools/resources/ -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/resources/BiocBuildEmail_Template.Rmd -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/resources/CRANReport_Template.Rmd -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/resources/Deprecation_Guidelines.Rmd -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/resources/Deprecation_RevDeps.Rmd -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/resources/Deprecation_Template.Rmd -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/resources/tarball-size.txt drwxr-xr-x root/root usr/lib/R/library/BiocPkgTools/rmarkdown/ drwxr-xr-x root/root usr/lib/R/library/BiocPkgTools/rmarkdown/templates/ drwxr-xr-x root/root usr/lib/R/library/BiocPkgTools/rmarkdown/templates/pkg_report/ drwxr-xr-x root/root usr/lib/R/library/BiocPkgTools/rmarkdown/templates/pkg_report/skeleton/ -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/rmarkdown/templates/pkg_report/skeleton/skeleton.Rmd -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/rmarkdown/templates/pkg_report/template.yaml drwxr-xr-x root/root usr/lib/R/library/BiocPkgTools/scripts/ -rw-r--r-- root/root usr/lib/R/library/BiocPkgTools/scripts/createAllDOIs.R