An ontology of neuron types based on the phenotypic dimensions of cells that can be measure experimentally.
Bernard de Bono - https://orcid.org/0000-0003-0638-5274
Mohameth François Sy - https://orcid.org/0000-0002-4603-9838
Monique Surles-Zeigler - https://orcid.org/0000-0002-2308-8813
Shreejoy Tripathy - https://orcid.org/0000-0002-1007-9061
Maryann Martone - https://orcid.org/0000-0002-8406-3871
Tom Gillespie - https://orcid.org/0000-0002-7509-4801
researchers working on cell types and their phenotypes, whether they are collecting raw data, organizing existing data, or creating simulations of cell types
`npokb:' and `ilxtr:' identifiers are not currently dereferenceable, but they are planned to be.
Protégé, FaCT++, ELK, python, pyontutils, neurondm
Specific ontology ids are never deprecated. If you need to know whether the modeling of a class has changed, neurondm can be used to regenerate the deterministic identifiers that appear as `ilxtr:hasTemporaryId'.
`rdfs:label' must be present. `skos:prefLabel' must be present for common usage types, and should be present when possible for evidence based models. Since the constituent ontology files that make up the npo are generated using python, provenance is primarily stored in the git repository pointed to via the `prov:wasGeneratedBy' predicate in the `owl:Ontology' header for individual files, in this case that repository is `<https://github.com/tgbugs/pyontutils>'
`rdfs:label' must be automatically generated using neurondm. Labels are generated from the labels of the constituent phenotype values. Only restrictions specifying necessary criteria for defining the type (i.e. those that are contained in an `owl:equivalentClass' statement) are included when generating the name. The ordering of the dimensions is specified in https://github.com/tgbugs/pyontutils/blob/a5e9fcc70d56870e692c17cb7fadce735a281d02/neurondm/neurondm/core.py#L135-L389
No external evaluation has been conducted. See https://doi.org/10.1007/s12021-022-09566-7
`npokb:[0-9]+' identifiers are assigned sequentially via https://github.com/tgbugs/pyontutils/blob/a5e9fcc70d56870e692c17cb7fadce735a281d02/nifstd/nifstd_tools/map-identifiers.py#L20-L49. An index of issued identifiers is retained at https://github.com/SciCrunch/NIF-Ontology/blob/dev-sckan/ttl/generated/neurons/npokb-index.ttl. Note that the current implementation currently does not correctly handles cases where the constituent phenotypes of a class change.
There is a need to bridge the gap between historical definitions of cell types from the literature, with cell types being defined using a wide variety of new techniques. There is also a need to be able to bridge and reconcile the wide variety of local terminology used across laboratories and place them on more solid foundations derived from the methodology used to make measurements on cells.
Scope: neuron types, and the dimensions and values of their constituent phenotypes. Coverage: an inventory of common usage types from existing sources, as well as three examples of evidence based models of cell types from recent publications.
The npo is maintained as part of the NIF-Ontology.
See `MIRO:axiom_patterns' and paper https://doi.org/10.1007/s12021-022-09566-7
Development versions of the ontology are released continuously and are identified by their git commit hashes. Stable versions are released periodically and can be accessed by their git tag.
Please see the project site https://github.com/BFO-ontology/BFO, the bfo2 owl discussion group http://groups.google.com/group/bfo-owl-devel, the bfo2 discussion group http://groups.google.com/group/bfo-devel, the tracking google doc http://goo.gl/IlrEE, and the current version of the bfo2 reference http://purl.obolibrary.org/obo/bfo/dev/bfo2-reference.docx. This ontology is generated from a specification at https://github.com/BFO-ontology/BFO/tree/master/src/ontology/owl-group/specification/ and with the code that generates the OWL version in https://github.com/BFO-ontology/BFO/tree/master/src/tools/. A very early version of BFO version 2 in CLIF is at http://purl.obolibrary.org/obo/bfo/dev/bfo.clif.
The BSD license on the BFO project site refers to code used to build BFO.
This BFO 2.0 version represents a major update to BFO and is not strictly backwards compatible with BFO 1.1. The previous OWL version of BFO, version 1.1.1 will remain available at http://ifomis.org/bfo/1.1 and will no longer be updated. The BFO 2.0 OWL is a classes-only specification. The incorporation of core relations has been held over for a later version.
BFO 2 Reference: BFO does not claim to provide complete coverage of entities of all types. It seeks only to provide coverage of those entities studied by empirical science together with those entities which affect or are involved in human activities such as data processing and planning - coverage that is sufficiently broad to provide assistance to those engaged in building domain ontologies for purposes of data annotation.
BFO 2 Reference: BFO's treatment of continuants and occurrents - as also its treatment of regions, rests on a dichotomy between space and time, and on the view that there are two perspectives on reality - earlier called the 'SNAP' and 'SPAN' perspectives, both of which are essential to the non-reductionist representation of reality as we understand it from the best available science.
BFO 2 Reference: For both terms and relational expressions in BFO, we distinguish between primitive and defined. 'Entity' is an example of a primitive term. Primitive terms in a highest-level ontology such as BFO are terms that are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms.
Custom bridge for importing specific neuron TTL files for SCKAN.
An anatomical space is a combination of a mathematical space with an anatomical space such that there is a defined mapping between the anatomical axes and the mathematical axes. A mathematical coordinate space by itself is NOT an anatomical space because it admits all possible orientations and reflections of the anatomical space, so for example a brain can be rotated in all directions and still be in that mathematical coordinate space. Such spaces are called unoriented spaces and are a source of significant pain when dealing with anatomical datasets.
To avoid problems like those encountered by nifti an anatomical reference space MUST define an anatomical axis alignment vector which states, for example, [X, Y, Z] -> [R, A, D] (left hand rule). This immediately indicates the three annotations required on any unoriented dataset as opposed to someone trying to apply the anatomical directions directly to the unoriented dataset
Some specialized data that is about some organism.
Parcellation regions are 'anatomical entities' that correspond to some part of a real biological system and are equivalent to an intersection between a parcellation label and a specific version of an atlas that defines or uses that label and that provides a definitive (0, 1, or probabilistic) way to determine whether a particular sample corresponds to any given region.
Generic partonomy relationship; does not distinguish among subtypes
definition
Expresses a relationship between a neuron type and some anatomical criteria, such as being located in a particular system. Note that this NOT a subPropertOf hasLocationPhenotype.
This is used to differentiate things like parasympathetic preganglionic from raw hasPhenotype. This can be used in cases where the meaning is clear to the domain experts, but has not been fully formalized.
a weak property that only asserts that distally there is expected to be at least one case of a hasAxonSensorySubcellularElementIn region in the partial order
not clear whether this should be subPropertyOf hasMorphologicalPhenotype
Expresses a relationship between a neuron type and a morphological phenotype concept. This should be used when a neuron type is described using a high level morphological concept class.
Expresses a relationship between a neuron type and some phenotype of its axon.
Use to provide clarity about where a generic phenotype is attached in the event that the object is not qualified. The alternative is to precompose the subcompartments e.g. SmallSomaPhenotype and SmallAxonPhenotype.
DO NOT USE, AMBIGUOUS! projectsTo does not work because of dendrodentritic synapses, for the same reason this cannot be a subProperty of hasAxonLocatedIn
Expresses a relationship between a neuron and a nervous system region where that neuron has a part which is involved in the direct detection of sensory stimuli.
This is the equivalent of axon terminals for sensory dendrites in the peripheral nervous system. Not 100% sure on the modeling, but some mechanosensory neurons this would be the anatomcal region(s) where the Pacinian corpuscle are located.
Expresses a relationship between a neuron type and a biological sex. This should be used when a neuron type has been observed in a specific sex.
Expresses a relationship between a neuron type and an opaque symbol that is used by experts to distinguish subtypes.
Use this when numbers or letters have been assigned to disambiguate naming.
Expresses a relationship between a neuron type and a type computed from only molecular data.
Expresses a relationship between a neuron type and a type computed from some combination of primary data types.
Expresses a relationship between a neuron type and a molecule type, a gene type, or a gene product type.
This can be used for detection of the molecule or gene by any means.
Expresses a relationship between a neuron type and a type computed from only DNA data (e.g. epigenetics data).
Expresses a relationship between a neuron type and a type computed from only Protein expression data.
Expresses a relationship between a neuron type and a type computed from only RNA expression data.
can be inferred from symmetric connection + projects to
traditionally harder to get granular types here?
specificity of connections often require pharm
Expresses a relationship between a neuron type and a neuron type or a neuron type and a subcompartment of a neuron type some members are connected with eachother.
Absent a specific subcompartment we can only infer hasProjectionPhenotype at the granularity of soma + dendrite location. NOTE: This relationship does not imply direction. If you need direction please choose a subproperty.
Expresses a relationship between a neuron and a dendrite phenotype. This should be used when a neuron type is described by the morphology of its dendrites.
Expresses a relationship between a neuron type and some phenotype of its dendrite.
Expresses a relationship between a neuron type and a developmental stage. This should be used when a neuron type has been observed during a developmental stage.
Expresses a relationship between a neuron type and a developmental cell population. This should be used when a neuron develops from an identified developmental anatomical entity.
Expresses a relationship between a neuron type and a developmental cell population. This should be used when a neuron develops from an identified developmental cell type.
Expresses a relationship between a neuron type and a gene type including any gene products.
This may also include the products of molecular synthesis pathways that are indirectly supported by genes, however it seems likely that that relationship should not be though of as an expression phenotype.
Expresses a relationship between a neuron type and an electrophysiological phenotype concept. This should be used when a neuron type is described using a high level electrophysiological concept class.
Expresses a relationship between a neuron and an experimental condition. This should be used when a neuron type is described by some experimental condition or functional designation.
This needs a better name. It is clear what it means when you see examples of the usage.
Expresses a relationship between a neuron and the immediate effect that it has on post synaptic cells. This is usually either excitatory or inhibitory.
this is currently a subproperty of hasPhenotype because we need to work out the relationship between circuit role and projection phenotype
Expresses a relationship between a neuron type and a species. This should be used when a neuron type has been observed in a specific species.
should rarely be used, even if dealing with evidence based models because it is an extremely weak assertion, possibly rename to hasBeenObservedInAtLeastOneIndividualInSpecies or something like that
Expresses a relationship between a neuron type and a taxon. When dealing with both EBMs and CUTs this is the predicate that should be used.
this is the weakest assertion we have available at a taxon level, hasInstanceInSpecies is even weaker since it does not propagage
Expresses a relationship between a neuron type and a laminar brain region.
May need hasSomaLayerLocation or something, do we really even need this?? if axioms are missing in parcellation schemes and uberon then it should be easy enough to add them, or at least we won't get disjointness issues because layers of cortex are orthogonal to parts of cortex (eg) and thus we shouldnt get reasoning errors
Expresses a relationship between a neuron type and a brain region or brain parcel. This is a superProperty and should not be used directly.
This property should not be used directly.
Expresses a relationship between a neuron type and a neurotransmitter that is released from vesicles contained within neurons of that neuron type.
includes small molecule and peptide, not entirely sure if we need this one, we do because expression and release are not 1:1
This should be used for detection of RNAs that code for proteins which may or may not have been detected directly.
of course this can never be universal, so is mostly useful for the python representation
Expresses a restriction that modifies all phenotypes associated with a neuron type or a logical phenotype, only meaningful when used inside of owl:intersectionOf
DO NOT USE, AMBIGUOUS! Are there cases where there are boutons that form on dendrites?
Expresses a relationship between a neuron type and whether the target region it projects to is on the same, opposite, or both sides of the brain.
ispilateral, contralateral, and bilateral are kind of like cortico thalamic but they are lifted to an invariant form that doesn’t care about the exact starting side, unilateral is the union of ipsi and contra but I’m fairly certain that unilateral should never be reported because it is ambiguous, this is primarily a convenience relation for neurons that have a single projection laterality, however there are plenty of examples where there are neurons that project to two different regions one of which is ipsi and the other of which is contra, those cases require the composition to happen on the object of the restriction, so you wind up with has projection phenotype some ipsilateral region, otherwise all our definitions are consistent with bilateral and unilateral projections, which is something we will probably have to fix, right now we are using the PATO laterality terms but the modelling isn’t really what we want because we need to have ipsilateral disjoint from contralateral and disjoint from bilateral
Expresses a relationship between a neuron type and a brain region that said neuron type sends axons to.
this might be clearer than hasCircuitRole but might confuse with projectsTo or the like, excitatory/inhibitory shouldn't be handled here? The way that projection vs intrinsic is modelled relates whether axons leave the brain region that contains the soma or not, this is not fully modelled at the moment
Expresses a relationship between a neuron and a small molecule that is the product of some molecular pathway that may or may not be expressed in the neuron in question.
This would probably be used to indicate the detection of the machinery for the synthesis pathway. If just the molecule is detected then hasMolecularPhenotype should be used since expression cannot be inferred (for neurotransmitters).
Expresses a relationship between a neuron type and some phenotype of its soma.
Expresses a relationship between a neuron type and a taxon. This should be used when a neuron type is thought to have been present in the last common ancestor of the taxon.
note that this is a subPropertyOf hasInstanceInTaxon NOT the other way around, aka isAncestralInTaxon, even stronger claim than instance and propagates downward implying that instances were present in all members except those specifically marked (which owl can't really support)
Expresses a relationship between a phenotype and a phenotype. This should be used when two phenotypes commonly cooccure.
this is not the right way to pull this off, need something akin to disjointness
Expresses a relationship between a phenotype and a brain region. This should be used when a neuron phenotype is observed in specific brain regions.
Expresses a relationship between a neuron type and a brain region where said neuron type has a reverse connection phenotype with some neuron type that has its soma located in said brain region.
this is essentially hasReverseProjectionPhenotype, however, unlike for connection phenotypes where forward and reverse are not ambiguous, a reverse projection is a confusing concept and thus not used
alternative term
BFO OWL specification label
Relates an entity in the ontology to the name of the variable that is used to represent it in the code that generates the BFO OWL file from the lispy specification.
Really of interest to developers only
curator note
BFO CLIF specification label
Relates an entity in the ontology to the term that is used to represent it in the the CLIF specification of BFO2
definition source
editor note
editor preferred term
example of usage
elucidation
has associated axiom(nl)
has associated axiom(fol)
has axiom label
imported from
term editor
Allen Mouse Brain Atlas parcellation label root
vasoactive intestinal peptide receptor 2
dataset -> dataset, rotation, translation
an anatomical axis, e.g. rostral caudal, dorsal ventral, etc. is composed of two colinear and opposed anatomical directions
cartesian anatomical axis alignment vector
an image space is the intrinsic or implicit space that is defined by an image, in digital images it is usually discretized as matrix, it usually euclidean and supports a cartesian distance metric, however in cases where there is a non-uniformly sampling sensor or if the image was collected in the frequency domain (e.g. for MRI images) then the image space has different dimensions which may non-spatial (FIXME need some clarity about data captured in the frequency domain)
are specimen/individual space different from image/dataset space?
A set of anatomical annotations that are anchored in the same space.
It is probably the case that the hasMember Annotation restriction could be an equivalent class axiom.
An anatomical reference atlas is information content entity that contains minimally a notion of space and one of an annotation set or an unannotated but registered set of source data, the space may be explicit or implicit. An atlas is anything that is used to guide experiments or deal with some spatial relation between things or the location of things. For example a feature atlas may have only a boolean mask of stained/unstained for a given marker across the whole brain. On the other hand there may be purely schematic or conceptual atlases that show the relative positions of landmarks that are useful for guiding surgical procedures that have an intentionally distorted or schematic representation of space but that nonetheless capture real an critical spatial relations between regions. Reference atlases usually have additional parts that make them more useful in certain situations, such as a well defined coordinate system, delineations indicating the boundaries of various regions or cell populations, landmarks, and labels and names to make it easier to communicate about well known and useful locations.
a collection of terms that can be used to name annotations in an atlas
A border is a spatial entities that when projected into two dimensions forms a line (line in 2d or plane in 3d). The border may be of finite length, and may occupy a subsegment of a longer closed boundary.
A border is topologically equivalent to a point. A finite point, line, or plane. It can be used to define notions of nearness and relative position in the context of another landmark. For example if there are two points you can talk about a third point being on one side of the border point relative to the landmark point.
A boundary is a closed curve or surface that is topologically equivalent to a circle, it defines an inside and an outside that are disconnected.
curves that are topologically equivalent to a circle
a point surrounded by an indeterminate/unknown/probabilistic (but closed) boundary where the indeterminateness of said boundary is usually due to the fact that the context in which a label associated with the centroid is being used does not admit a single operational defintion, i.e. that there is not agreement on the exact definition of the term but there is some agreement that it exists
a 1d point defined by a single vector having the same dimensions as the space in which it is defined
an annotation with criteria demarcating the border between two regions or the boundary of a single region
toward the back or toward the top of the skull in organisms where development has twisted things (humans)
Parcellation labels are strings characthers sometimes associated with a unique identifier, such as an index number or an iri.
Any annotation that is not closed (topologically equivalent to a point).
dataset -> dataset, rotation, translation, scaling, or some nonlinear transformation
Registration is the process of changing the relative position and/or scaling of two datasets so that they become aligned for some definition of alignment.
Orienting is the process of changing the relative position of two axes so that they become aligned for some definition of alignment.
an annotation set that may or may not have an explicit bounding region but that does break or separate the area or volume into distinct segments
This isn't really distinct from an annotation set.
an annotation set that forms a non-overlapping cover of a single bounding annotation
closure axioms related to the bounding annotation need to be considered
A mathematical space that is not equipped with an explicit mapping between spatial and anatomical axes. In such spaces it is not possible to determine whether an anatomical dataset is correctly oriented even if that dataset has been annotated with landmarks that can be used to determine the anatomical axes.
entity
BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81
Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
Julius Caesar
the Second World War
Verdi’s Requiem
your body mass index
An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])
continuant
BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240
Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]
occurrent
BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region
BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.
Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]
independent continuant
b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
a chair
a heart
a leg
a molecule
a spatial region
an atom
an orchestra.
an organism
the bottom right portion of a human torso
the interior of your mouth
For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]
specifically dependent continuant
b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
the role of being a doctor
of one-sided specifically dependent continuants: the mass of this tomato
of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates.
Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key
the disposition of this fish to decay
the function of this heart: to pump blood
the mutual dependence of proton donors and acceptors in chemical reactions [79
the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction
the pink color of a medium rare piece of grilled filet mignon at its center
the shape of this hole.
the smell of this portion of mozzarella
(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]
generically dependent continuant
b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity.
the pdf file on your laptop, the pdf file that is a copy thereof on my laptop
the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule.
(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]
spatial region
BFO 2 Reference: Spatial regions do not participate in processes.
Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional.
A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])
All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])
(forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001]
(forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001]
immaterial entity
BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10
site
a hole in the interior of a portion of cheese
a rabbit hole
an air traffic control region defined in the airspace above an airport
Manhattan Canyon)
the cockpit of an aircraft
the Grand Canyon
the hold of a ship
the interior of a kangaroo pouch
the interior of the trunk of your car
the interior of your bedroom
the interior of your office
the interior of your refrigerator
the lumen of your gut
the Piazza San Marco
your left nostril (a fiat part – the opening – of your left nasal cavity)
b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])
(forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002]
continuant fiat boundary
b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])
BFO 2 Reference: a continuant fiat boundary is a boundary of some material entity (for example: the plane separating the Northern and Southern hemispheres; the North Pole), or it is a boundary of some immaterial entity (for example of some portion of airspace). Three basic kinds of continuant fiat boundary can be distinguished (together with various combination kinds [29
BFO 2 Reference: In BFO 1.1 the assumption was made that the external surface of a material entity such as a cell could be treated as if it were a boundary in the mathematical sense. The new document propounds the view that when we talk about external surfaces of material objects in this way then we are talking about something fiat. To be dealt with in a future version: fiat boundaries at different levels of granularity.More generally, the focus in discussion of boundaries in BFO 2.0 is now on fiat boundaries, which means: boundaries for which there is no assumption that they coincide with physical discontinuities. The ontology of boundaries becomes more closely allied with the ontology of regions.
Continuant fiat boundary doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the mereological sum of two-dimensional continuant fiat boundary and a one dimensional continuant fiat boundary that doesn't overlap it. The situation is analogous to temporal and spatial regions.
Every continuant fiat boundary is located at some spatial region at every time at which it exists
(iff (ContinuantFiatBoundary a) (and (ImmaterialEntity a) (exists (b) (and (or (ZeroDimensionalSpatialRegion b) (OneDimensionalSpatialRegion b) (TwoDimensionalSpatialRegion b)) (forall (t) (locatedInAt a b t)))) (not (exists (c t) (and (SpatialRegion c) (continuantPartOfAt c a t)))))) // axiom label in BFO2 CLIF: [029-001]
temporal region
Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional
A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001])
All parts of temporal regions are temporal regions. (axiom label in BFO2 Reference: [101-001])
Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])
(forall (r) (if (TemporalRegion r) (occupiesTemporalRegion r r))) // axiom label in BFO2 CLIF: [119-002]
(forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001]
(forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001]
spatiotemporal region
the spatiotemporal region occupied by a human life
the spatiotemporal region occupied by a process of cellular meiosis.
the spatiotemporal region occupied by the development of a cancer tumor
A spatiotemporal region is an occurrent entity that is part of spacetime. (axiom label in BFO2 Reference: [095-001])
All parts of spatiotemporal regions are spatiotemporal regions. (axiom label in BFO2 Reference: [096-001])
Each spatiotemporal region at any time t projects_onto some spatial region at t. (axiom label in BFO2 Reference: [099-001])
Each spatiotemporal region projects_onto some temporal region. (axiom label in BFO2 Reference: [098-001])
Every spatiotemporal region occupies_spatiotemporal_region itself.
Every spatiotemporal region s is such that s occupies_spatiotemporal_region s. (axiom label in BFO2 Reference: [107-002])
(forall (r) (if (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion r r))) // axiom label in BFO2 CLIF: [107-002]
(forall (x t) (if (SpatioTemporalRegion x) (exists (y) (and (SpatialRegion y) (spatiallyProjectsOntoAt x y t))))) // axiom label in BFO2 CLIF: [099-001]
(forall (x y) (if (and (SpatioTemporalRegion x) (occurrentPartOf y x)) (SpatioTemporalRegion y))) // axiom label in BFO2 CLIF: [096-001]
(forall (x) (if (SpatioTemporalRegion x) (exists (y) (and (TemporalRegion y) (temporallyProjectsOnto x y))))) // axiom label in BFO2 CLIF: [098-001]
(forall (x) (if (SpatioTemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [095-001]
process
p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)
a process of cell-division, \ a beating of the heart
a process of meiosis
a process of sleeping
the course of a disease
the flight of a bird
the life of an organism
your process of aging.
(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]
process boundary
p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001])
the boundary between the 2nd and 3rd year of your life.
Every process boundary occupies_temporal_region a zero-dimensional temporal region. (axiom label in BFO2 Reference: [085-002])
(forall (x) (if (ProcessBoundary x) (exists (y) (and (ZeroDimensionalTemporalRegion y) (occupiesTemporalRegion x y))))) // axiom label in BFO2 CLIF: [085-002]
(iff (ProcessBoundary a) (exists (p) (and (Process p) (temporalPartOf a p) (not (exists (b) (properTemporalPartOf b a)))))) // axiom label in BFO2 CLIF: [084-001]
two-dimensional spatial region
an infinitely thin plane in space.
the surface of a sphere-shaped part of space
A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001])
(forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001]
three-dimensional spatial region
a cube-shaped region of space
a sphere-shaped region of space,
A three-dimensional spatial region is a spatial region that is of three dimensions. (axiom label in BFO2 Reference: [040-001])
(forall (x) (if (ThreeDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [040-001]
disposition
BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type.
an atom of element X has the disposition to decay to an atom of element Y
certain people have a predisposition to colon cancer
children are innately disposed to categorize objects in certain ways.
the cell wall is disposed to filter chemicals in endocytosis and exocytosis
b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])
If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])
(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002]
(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002]
realizable entity
the disposition of this piece of metal to conduct electricity.
the disposition of your blood to coagulate
the function of your reproductive organs
the role of this boundary to delineate where Utah and Colorado meet
To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]
role
BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives.
John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.
the priest role
the role of a boundary to demarcate two neighboring administrative territories
the role of a building in serving as a military target
the role of a stone in marking a property boundary
the role of subject in a clinical trial
the student role
b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]
quality
the ambient temperature of this portion of air
the color of a tomato
the length of the circumference of your waist
the mass of this piece of gold.
the shape of your nose
the shape of your nostril
a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])
If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])
(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001]
(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001]
zero-dimensional spatial region
A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001])
(forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001]
fiat object part
BFO 2 Reference: Most examples of fiat object parts are associated with theoretically drawn divisions
or with divisions drawn by cognitive subjects for practical reasons, such as the division of a cake (before slicing) into (what will become) slices (and thus member parts of an object aggregate). However, this does not mean that fiat object parts are dependent for their existence on divisions or delineations effected by cognitive subjects. If, for example, it is correct to conceive geological layers of the Earth as fiat object parts of the Earth, then even though these layers were first delineated in recent times, still existed long before such delineation and what holds of these layers (for example that the oldest layers are also the lowest layers) did not begin to hold because of our acts of delineation.Treatment of material entity in BFOExamples viewed by some as problematic cases for the trichotomy of fiat object part, object, and object aggregate include: a mussel on (and attached to) a rock, a slime mold, a pizza, a cloud, a galaxy, a railway train with engine and multiple carriages, a clonal stand of quaking aspen, a bacterial community (biofilm), a broken femur. Note that, as Aristotle already clearly recognized, such problematic cases – which lie at or near the penumbra of instances defined by the categories in question – need not invalidate these categories. The existence of grey objects does not prove that there are not objects which are black and objects which are white; the existence of mules does not prove that there are not objects which are donkeys and objects which are horses. It does, however, show that the examples in question need to be addressed carefully in order to show how they can be fitted into the proposed scheme, for example by recognizing additional subdivisions [29
the division of the brain into regions
the division of the planet into hemispheres
the dorsal and ventral surfaces of the body
the FMA:regional parts of an intact human body.
the upper and lower lobes of the left lung
the Western hemisphere of the Earth
b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004])
(forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004]
material entity
BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60
BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity.
BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here.
a flame
a forest fire
a human being
a hurricane
a photon
a puff of smoke
a sea wave
a tornado
an aggregate of human beings.
an energy wave
an epidemic
the undetached arm of a human being
A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]
(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
one-dimensional spatial region
an edge of a cube-shaped portion of space.
A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001])
(forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001]
object aggregate
ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee).
a collection of cells in a blood biobank.
a swarm of bees is an aggregate of members who are linked together through natural bonds
a symphony orchestra
an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)
defined by fiat: the aggregate of members of an organization
defined through physical attachment: the aggregate of atoms in a lump of granite
defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container
defined via attributive delimitations such as: the patients in this hospital
the aggregate of bearings in a constant velocity axle joint
the aggregate of blood cells in your body
the nitrogen atoms in the atmosphere
the restaurants in Palo Alto
your collection of Meissen ceramic plates.
b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])
(forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]
object
BFO 2 Reference: an object is a maximal causally unified material entity
BFO 2 Reference: BFO rests on the presupposition that at multiple micro-, meso- and macroscopic scales reality exhibits certain stable, spatially separated or separable material units, combined or combinable into aggregates of various sorts (for example organisms into what are called ‘populations’). Such units play a central role in almost all domains of natural science from particle physics to cosmology. Many scientific laws govern the units in question, employing general terms (such as ‘molecule’ or ‘planet’) referring to the types and subtypes of units, and also to the types and subtypes of the processes through which such units develop and interact. The division of reality into such natural units is at the heart of biological science, as also is the fact that these units may form higher-level units (as cells form multicellular organisms) and that they may also form aggregates of units, for example as cells form portions of tissue and organs form families, herds, breeds, species, and so on. At the same time, the division of certain portions of reality into engineered units (manufactured artifacts) is the basis of modern industrial technology, which rests on the distributed mass production of engineered parts through division of labor and on their assembly into larger, compound units such as cars and laptops. The division of portions of reality into units is one starting point for the phenomenon of counting.
BFO 2 Reference: Each object is such that there are entities of which we can assert unproblematically that they lie in its interior, and other entities of which we can assert unproblematically that they lie in its exterior. This may not be so for entities lying at or near the boundary between the interior and exterior. This means that two objects – for example the two cells depicted in Figure 3 – may be such that there are material entities crossing their boundaries which belong determinately to neither cell. Something similar obtains in certain cases of conjoined twins (see below).
BFO 2 Reference: To say that b is causally unified means: b is a material entity which is such that its material parts are tied together in such a way that, in environments typical for entities of the type in question,if c, a continuant part of b that is in the interior of b at t, is larger than a certain threshold size (which will be determined differently from case to case, depending on factors such as porosity of external cover) and is moved in space to be at t at a location on the exterior of the spatial region that had been occupied by b at t, then either b’s other parts will be moved in coordinated fashion or b will be damaged (be affected, for example, by breakage or tearing) in the interval between t and t.causal changes in one part of b can have consequences for other parts of b without the mediation of any entity that lies on the exterior of b. Material entities with no proper material parts would satisfy these conditions trivially. Candidate examples of types of causal unity for material entities of more complex sorts are as follows (this is not intended to be an exhaustive list):CU1: Causal unity via physical coveringHere the parts in the interior of the unified entity are combined together causally through a common membrane or other physical covering\. The latter points outwards toward and may serve a protective function in relation to what lies on the exterior of the entity [13, 47
BFO 2 Reference: ‘objects’ are sometimes referred to as ‘grains’ [74
atom
cell
cells and organisms
engineered artifacts
grain of sand
molecule
organelle
organism
planet
solid portions of matter
star
b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001])
function
BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc.
the function of a hammer to drive in nails
the function of a heart pacemaker to regulate the beating of a heart through electricity
the function of amylase in saliva to break down starch into sugar
A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])
(forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001]
one-dimensional temporal region
BFO 2 Reference: A temporal interval is a special kind of one-dimensional temporal region, namely one that is self-connected (is without gaps or breaks).
the temporal region during which a process occurs.
A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001])
(forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001]
zero-dimensional temporal region
temporal instant.
a temporal region that is occupied by a process boundary
right now
the moment at which a child is born
the moment at which a finger is detached in an industrial accident
the moment of death.
A zero-dimensional temporal region is a temporal region that is without extent. (axiom label in BFO2 Reference: [102-001])
(forall (x) (if (ZeroDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [102-001]
one-dimensional continuant fiat boundary
all geopolitical boundaries
all lines of latitude and longitude
The Equator
the line separating the outer surface of the mucosa of the lower lip from the outer surface of the skin of the chin.
the median sulcus of your tongue
a one-dimensional continuant fiat boundary is a continuous fiat line whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [032-001])
(iff (OneDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (OneDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [032-001]
two-dimensional continuant fiat boundary
a two-dimensional continuant fiat boundary (surface) is a self-connected fiat surface whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [033-001])
(iff (TwoDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (TwoDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [033-001]
zero-dimensional continuant fiat boundary
zero dimension continuant fiat boundaries are not spatial points. Considering the example 'the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet' : There are many frames in which that point is zooming through many points in space. Whereas, no matter what the frame, the quadripoint is always in the same relation to the boundaries of Colorado, Utah, New Mexico, and Arizona.
the geographic North Pole
the point of origin of some spatial coordinate system.
the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet
a zero-dimensional continuant fiat boundary is a fiat point whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [031-001])
(iff (ZeroDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (ZeroDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [031-001]
process profile
b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002])
On a somewhat higher level of complexity are what we shall call rate process profiles, which are the targets of selective abstraction focused not on determinate quality magnitudes plotted over time, but rather on certain ratios between these magnitudes and elapsed times. A speed process profile, for example, is represented by a graph plotting against time the ratio of distance covered per unit of time. Since rates may change, and since such changes, too, may have rates of change, we have to deal here with a hierarchy of process profile universals at successive levels
One important sub-family of rate process profiles is illustrated by the beat or frequency profiles of cyclical processes, illustrated by the 60 beats per minute beating process of John’s heart, or the 120 beats per minute drumming process involved in one of John’s performances in a rock band, and so on. Each such process includes what we shall call a beat process profile instance as part, a subtype of rate process profile in which the salient ratio is not distance covered but rather number of beat cycles per unit of time. Each beat process profile instance instantiates the determinable universal beat process profile. But it also instantiates multiple more specialized universals at lower levels of generality, selected from rate process profilebeat process profileregular beat process profile3 bpm beat process profile4 bpm beat process profileirregular beat process profileincreasing beat process profileand so on.In the case of a regular beat process profile, a rate can be assigned in the simplest possible fashion by dividing the number of cycles by the length of the temporal region occupied by the beating process profile as a whole. Irregular process profiles of this sort, for example as identified in the clinic, or in the readings on an aircraft instrument panel, are often of diagnostic significance.
The simplest type of process profiles are what we shall call ‘quality process profiles’, which are the process profiles which serve as the foci of the sort of selective abstraction that is involved when measurements are made of changes in single qualities, as illustrated, for example, by process profiles of mass, temperature, aortic pressure, and so on.
b process_profile_of c holds when b proper_occurrent_part_of c& there is some proper_occurrent_part d of c which has no parts in common with b & is mutually dependent on b& is such that b, c and d occupy the same temporal region (axiom label in BFO2 Reference: [094-005])
(forall (x y) (if (processProfileOf x y) (and (properContinuantPartOf x y) (exists (z t) (and (properOccurrentPartOf z y) (TemporalRegion t) (occupiesSpatioTemporalRegion x t) (occupiesSpatioTemporalRegion y t) (occupiesSpatioTemporalRegion z t) (not (exists (w) (and (occurrentPartOf w x) (occurrentPartOf w z))))))))) // axiom label in BFO2 CLIF: [094-005]
(iff (ProcessProfile a) (exists (b) (and (Process b) (processProfileOf a b)))) // axiom label in BFO2 CLIF: [093-002]
history
A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])
relational quality
b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])
a marriage bond, an instance of requited love, an obligation between one person and another.
(iff (RelationalQuality a) (exists (b c t) (and (IndependentContinuant b) (IndependentContinuant c) (qualityOfAt a b t) (qualityOfAt a c t)))) // axiom label in BFO2 CLIF: [057-001]
L-Cysteinyl-L-tyrosyl-L-isoleucyl-L-glutaminyl-L-asparaginyl-L-cysteinyl-L-prolyl-L-leucylglycinamide cyclic(1-6)-disulfide
Vesicular inhibitory amino acid transporter
dicarboxylic acids and O-substituted derivatives
L-alanylglycyl-L-cysteinyl-L-lysyl-L-asparaginyl-L-phenylalanyl-L-phenylalanyl-L-tryptophyl-L-lysyl-L-threonyl-L-phenylalanyl-L-threonyl-L-seryl-L-cysteine cyclic (3-14) disulfide
Synthetic growth hormone release-inhibiting hormone
T1-L2 spinal cord to paravertebral sympathetic chain of T12-L1 via white rami communicantes
Connectivity ambiguity: In the absence of experimental data on the specific spinal cord level from which this connection arises we decided to include all sympathetic spinal cord levels from T1 to L2. Spatial extent: Houdeau (1998) using retrograde tracing shows that the epicenter of the origin of the postganglionic fibers in the paravertebral sympathetic chain is at T12-L1, but the spread ranges from T10 to L2. Physiological condition: Sympathetic innervation is known to undergo dynamic functional and/or anatomical changes during gestation. This has been observed in several species including rats and humans. Vera et al (1997) https://doi.org/10.1016/s0006-8993(96)01107-9.
In female Norway rat, rat and rattus norvegicus, the sympathetic pre-ganglionic connection goes from lumbar subsegment of spinal cord or thoracic subsegment of spinal cord to First lumbar ganglion or Thirteenth thoracic ganglion or Twelfth thoracic ganglion via white ramus communicans. This connection projects from the lumbar subsegment of spinal cord and thoracic subsegment of spinal cord.
Wulf (2023) https://doi.org/10.3389/fncel.2023.999253 mentioned about the sympathetic innervation “The SPNs reside in the intermediolateral cell column (IML) of thoracolumbar spinal cord segments T1-L2 (McLachlan and Oldfield, 1981; Oldfield and McLachlan, 1981; Anderson et al., 1989)”. In light of the absense of experimental data on the level of the spinal cord that this connection arises from and suggested by the knowledge expert we decided to include all the sympathetic spinal cord from T1-L2. Houdeau (1998) using retrograde tracing shows that the epicenter of the origin of the postganglionic fibers in the paravertebral sympathetic chain is at T12-L1, but the spread ranges from T10 to L2. Alert 1 was suggested by the knowledge domain expert.
female lumbar subsegment of spinal cord thoracic subsegment of spinal cord (with-axon-in white ramus communicans) (with-axon-presynaptic-element-in L1 sympathetic chain ganglion T12 sympathetic chain ganglion T13 sympathetic chain ganglion) (projecting-onto neuron type femrep 31 neuron type femrep 32 neuron type femrep 33) neuron (implies Rattus norvegicus Sympathetic Pre-Ganglionic)
from lumbar subsegment of spinal cord or thoracic subsegment of spinal cord to First lumbar ganglion or Thirteenth thoracic ganglion or Twelfth thoracic ganglion via white ramus communicans
Added Alert Note per spreadsheet.\nsorry, i stand corrected! first lumbar DRG = http://uri.interlex.org/base/ilx_0104253\nWrong terms for parasympathetic chain ganglia. those terms are spinal ganglia (DRG).\nThis seems backwards? also the choice to use subsegment of spinal cord means that individual segments are not listed. is this desired?
thirteenth thoracic sympathetic ganglion
paravertebral sympathetic chain of T12-L1 to blood vessel of the upper uterus via lesser OR least splanchnic nerve OR lumbar splanchnic nerve via aorticorenal ganglion via ovarian plexus nerve
Data source note: Information on the splanchnic nerve comes from ISBN13:978-1608312948. Physiological condition: Sympathetic innervation is known to undergo dynamic functional and/or anatomical changes during gestation. This has been observed in several species including rats and humans. Vera et al (1997) https://doi.org/10.1016/s0006-8993(96)01107-9.
In female Norway rat, rat and rattus norvegicus, the sympathetic post-ganglionic connection goes from First lumbar ganglion or Thirteenth thoracic ganglion or Twelfth thoracic ganglion to blood vessel of the upper uterus via least splanchnic nerve, lesser splanchnic nerve, lumbar splanchnic nerve via aorticorenal ganglion via ovarian nerve plexus. This connection projects from the First lumbar ganglion, Thirteenth thoracic ganglion and Twelfth thoracic ganglion.
The term "celiac" was deleted from "aorticorenal ganglion" because it will bring more confusion than clarity here. In Houdeau (1998) in figure 7 the ganglia are depicted together. From the literature it seems celiac ganglion gives rise and is closely connected with aorticorenal so it is safe to include the aorticorenal ganglion here. 2) The original destination "upper uterine blood vessel of the myometrium or endometrium" changed to "blood vessel of the upper uterus" that covers the vasculature of the upper uterine segment. Houdeau (1998) using retrograde tracing shows that the epicenter of the origin of the postganglionic fibers in the paravertebral sympathetic chain is at T12-L1, but the spread ranges from T10 to L2. Information on the splanchnic nerve comes from ISBN13:978-1608312948.
female L1 sympathetic chain ganglion T12 sympathetic chain ganglion T13 sympathetic chain ganglion (with-axons-in aorticorenal ganglion least splanchnic nerve lesser splanchnic nerve lumbar splanchnic nerve ovarian nerve plexus) (with-axon-presynaptic-element-in blood vessel of the upper uterus) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from First lumbar ganglion or Thirteenth thoracic ganglion or Twelfth thoracic ganglion to blood vessel of the upper uterus via least splanchnic nerve, lesser splanchnic nerve, lumbar splanchnic nerve via aorticorenal ganglion via ovarian nerve plexus
paravertebral sympathetic chain of T12-L1 to smooth muscle of the upper uterus via lesser OR least splanchnic nerve OR lumbar splanchnic nerve via aortecorenal ganglion via ovarian plexus nerve
In female Norway rat, rat and rattus norvegicus, the sympathetic post-ganglionic connection goes from First lumbar ganglion or Thirteenth thoracic ganglion or Twelfth thoracic ganglion to smooth muscle of the upper uterus via least splanchnic nerve, lesser splanchnic nerve, lumbar splanchnic nerve via aorticorenal ganglion via ovarian nerve plexus. This connection projects from the First lumbar ganglion, Thirteenth thoracic ganglion and Twelfth thoracic ganglion.
Houdeau (1998) using retrograde tracing shows that the epicenter of the origin of the postganglionic fibers in the paravertebral sympathetic chain is at T12-L1, but the spread ranges from T10 to L2. Information on the splanchnic nerve comes from ISBN13:978-1608312948.
female L1 sympathetic chain ganglion T12 sympathetic chain ganglion T13 sympathetic chain ganglion (with-axons-in aorticorenal ganglion least splanchnic nerve lesser splanchnic nerve lumbar splanchnic nerve ovarian nerve plexus) (with-axon-presynaptic-element-in smooth muscle of the upper uterus) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from First lumbar ganglion or Thirteenth thoracic ganglion or Twelfth thoracic ganglion to smooth muscle of the upper uterus via least splanchnic nerve, lesser splanchnic nerve, lumbar splanchnic nerve via aorticorenal ganglion via ovarian nerve plexus
paravertebral sympathetic chain of T12-L1 to uterine tube infundibulum via lesser OR least splanchnic nerve OR lumbar splanchnic nerve via aortecorenal ganglion via ovarian plexus nerve
In female Norway rat, rat and rattus norvegicus, the sympathetic post-ganglionic connection goes from First lumbar ganglion or Thirteenth thoracic ganglion or Twelfth thoracic ganglion to uterine tube infundibulum via least splanchnic nerve, lesser splanchnic nerve, lumbar splanchnic nerve via aorticorenal ganglion via ovarian nerve plexus. This connection projects from the First lumbar ganglion, Thirteenth thoracic ganglion and Twelfth thoracic ganglion.
female L1 sympathetic chain ganglion T12 sympathetic chain ganglion T13 sympathetic chain ganglion (with-axons-in aorticorenal ganglion least splanchnic nerve lesser splanchnic nerve lumbar splanchnic nerve ovarian nerve plexus) (with-axon-presynaptic-element-in uterine tube infundibulum) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from First lumbar ganglion or Thirteenth thoracic ganglion or Twelfth thoracic ganglion to uterine tube infundibulum via least splanchnic nerve, lesser splanchnic nerve, lumbar splanchnic nerve via aorticorenal ganglion via ovarian nerve plexus
Added species.\nAdded female for sex. Needs species?
ramus renalis nervus splanchnici minoris
T1-L2 spinal cord to suprarenal ganglion via thoracic splanchnic nerve OR lumbar splanchnic nerve
Connectivity ambiguity: In the absence of experimental data on the specific spinal cord level from which this connection arises we decided to include all sympathetic spinal cord levels from T1 to L2. Spatial extent: Houdeau (1998) using retrograde tracing shows that the epicenter of the origin of the postganglionic fibers in the paravertebral sympathetic chain is at T12-L1, but the spread ranges from T10 to L2. Data source note: Information on the splanchnic nerve comes from ISBN13:978-1608312948. Physiological condition: Sympathetic innervation is known to undergo dynamic functional and/or anatomical changes during gestation. This has been observed in several species including rats and humans. Vera et al (1997) https://doi.org/10.1016/s0006-8993(96)01107-9.
In female Norway rat, rat and rattus norvegicus, the sympathetic pre-ganglionic connection goes from lumbar subsegment of spinal cord or thoracic subsegment of spinal cord to suprarenal ganglion via lumbar splanchnic nerve, thoracic splanchnic nerve. This connection projects from the lumbar subsegment of spinal cord and thoracic subsegment of spinal cord.
Wulf (2023) https://doi.org/10.3389/fncel.2023.999253 mentioned about the sympathetic innervation “The SPNs reside in the intermediolateral cell column (IML) of thoracolumbar spinal cord segments T1-L2 (McLachlan and Oldfield, 1981; Oldfield and McLachlan, 1981; Anderson et al., 1989)”. In light of the absense of experimental data on the level of the spinal cord that this connection arises from and suggested by the knowledge expert we decided to include all the sympathetic spinal cord from T1-L2. Information on the splanchnic nerve comes from ISBN13:978-1608312948.
female lumbar subsegment of spinal cord thoracic subsegment of spinal cord (with-axons-in lumbar splanchnic nerve thoracic splanchnic nerve) (with-axon-presynaptic-element-in suprarenal ganglion) (projecting-onto neuron type femrep 35) neuron (implies Rattus norvegicus Sympathetic Pre-Ganglionic)
from lumbar subsegment of spinal cord or thoracic subsegment of spinal cord to suprarenal ganglion via lumbar splanchnic nerve, thoracic splanchnic nerve
suprarenal ganglion to uterine tube infundibulum via ovarian plexus nerve
Physiological condition: Sympathetic innervation is known to undergo dynamic functional and/or anatomical changes during gestation. This has been observed in several species including rats and humans. Vera et al (1997) https://doi.org/10.1016/s0006-8993(96)01107-9.
In female Norway rat, rat and rattus norvegicus, the sympathetic post-ganglionic connection goes from suprarenal ganglion to uterine tube infundibulum via ovarian nerve plexus. This connection projects from the suprarenal ganglion.
female suprarenal ganglion (with-axon-in ovarian nerve plexus) (with-axon-presynaptic-element-in uterine tube infundibulum) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from suprarenal ganglion to uterine tube infundibulum via ovarian nerve plexus
T9-T10 spinal cord to paravertebral sympathetic chain of T12-L1 via white communicating rami of T9-T10
Spatial extent: In Gerandai (1998) https://doi.org/10.1159/000054372 they observed a spread of labeled cells in the IML from T4-L3 but the epicenter was T9-T10. Physiological condition: Sympathetic innervation is known to undergo dynamic functional and/or anatomical changes during gestation. This has been observed in several species including rats and humans. Vera et al (1997) https://doi.org/10.1016/s0006-8993(96)01107-9.
In female Norway rat, rat and rattus norvegicus, the sympathetic pre-ganglionic connection goes from T10 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to First lumbar ganglion or Thirteenth thoracic ganglion or Twelfth thoracic ganglion via white communicating ramus of ninth thoracic spinal nerve, white communicating ramus of tenth thoracic spinal nerve. This connection projects from the T9 segment of thoracic spinal cord and T10 segment of thoracic spinal cord.
Originally the population had as via "splanchnic nerve" but considering it is a communication between spinal cord and sympathetic chain "white rami communicantes" is representing the route more appropriately. "In Gerandai (1998) 10.1159/000054372 they observed labeled cells in the IML from T4-L3 but the epicenter was T9-T10.
female T10 segment of thoracic spinal cord T9 segment of thoracic spinal cord (with-axons-in white communicating ramus of ninth thoracic spinal nerve white communicating ramus of tenth thoracic spinal nerve) (with-axon-presynaptic-element-in L1 sympathetic chain ganglion T12 sympathetic chain ganglion T13 sympathetic chain ganglion) (projecting-onto neuron type femrep 37) neuron (implies Rattus norvegicus Sympathetic Pre-Ganglionic)
from T10 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to First lumbar ganglion or Thirteenth thoracic ganglion or Twelfth thoracic ganglion via white communicating ramus of ninth thoracic spinal nerve, white communicating ramus of tenth thoracic spinal nerve
Sue and Ilias discuss the evolution of this population; and added alertNote as well as updated the Statement label for the population to match the spreadsheet.\nMissing parasympathetic chain ganglia terms as destination. I think the lumbar & T13 ganglia are incorrect terms (aren't they pre-vertebral spinal ganglia?)
white communicating ramus of ninth thoracic spinal nerve
white communicating ramus of tenth thoracic spinal nerve
paravertebral sympathetic chain of T12-L1 to left ovary or right ovary via ovarian plexus nerve
Spatial extent: In Klein (1988) https://doi.org/10.1016/0304-3940(88)90354-0 they observed cells spanning from T10-L4. However, the epicenter was T12-L1. From the references it seems to be a difference in the innervation of right and left ovary. Physiological condition: Sympathetic innervation is known to undergo dynamic functional and/or anatomical changes during gestation. This has been observed in several species including rats and humans. Vera et al (1997) https://doi.org/10.1016/s0006-8993(96)01107-9.
In female Norway rat, rat and rattus norvegicus, the sympathetic post-ganglionic connection goes from First lumbar ganglion or Thirteenth thoracic ganglion or Twelfth thoracic ganglion to left ovary or right ovary via ovarian nerve plexus. This connection projects from the First lumbar ganglion, Thirteenth thoracic ganglion and Twelfth thoracic ganglion.
female L1 sympathetic chain ganglion T12 sympathetic chain ganglion T13 sympathetic chain ganglion (with-axon-in ovarian nerve plexus) (with-axon-presynaptic-element-in left ovary right ovary) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from First lumbar ganglion or Thirteenth thoracic ganglion or Twelfth thoracic ganglion to left ovary or right ovary via ovarian nerve plexus
suprarenal ganglion to right ovary or left ovary via superior ovarian nerve
Laterality difference: The references indicate a laterality difference in the innervation of the ovary. Physiological condition: Sympathetic innervation is known to undergo dynamic functional and/or anatomical changes during gestation. This has been observed in several species including rats and humans. Vera et al (1997) https://doi.org/10.1016/s0006-8993(96)01107-9. Alert 3: Pastelin 2017 and 2023 - SON innervation includes both ipsilateral and contralateral postganglionic fibers—i.e., some fibers cross to innervate the ovary from the opposite side's ganglia (Contralateral CG and SG also labeled when injecting True Blue (TB) tracer into the right ovary). OPN innervation appears mostly ipsilateral, with no contralateral fibers reported.
In female Norway rat, rat and rattus norvegicus, the sympathetic post-ganglionic connection goes from suprarenal ganglion to left ovary or right ovary via Superior ovarian nerve. This connection projects from the suprarenal ganglion.
female suprarenal ganglion (with-axon-in SON) (with-axon-presynaptic-element-in left ovary right ovary) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from suprarenal ganglion to left ovary or right ovary via Superior ovarian nerve
suprarenal ganglion to left ovary via ovarian plexus nerve OR superior ovarian nerve
Alert 1: The references indicate a laterality difference in the innervation of the ovary. Alert 2: Sympathetic innervation is known to undergo dynamic functional and/or anatomical changes during gestation. This has been observed in several species including rats and humans. Vera et al (1997) https://doi.org/10.1016/s0006-8993(96)01107-9.
In female Norway rat, rat and rattus norvegicus, the sympathetic post-ganglionic connection goes from suprarenal ganglion to left ovary via Superior ovarian nerve, ovarian nerve plexus. This connection projects from the suprarenal ganglion.
This population could be merged with femrep:38 "celiac ganglion-superior mesenteric ganglion complex to left ovary via superior ovarian nerve OR ovarian plexus nerve" based on the source of information. However, this was added as a separate population because we do not have information about the preganglionic population of this connection as it happens in the case of femrep:38 that is the forward connection of femrep:39.
female suprarenal ganglion (with-axons-in SON ovarian nerve plexus) (with-axon-presynaptic-element-in left ovary) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from suprarenal ganglion to left ovary via Superior ovarian nerve, ovarian nerve plexus
T9-T10 spinal cord to celiac ganglion-superior mesenteric ganglion complex or suprarenal ganglion via greater splanchnic nerve
Spatial extent: In Gerandai (1998) 10.1159/000054372 they observed labeled cells in the IML from T4-L3 but the epicenter was T9-T10. Data source note: Information on the splanchnic nerve comes from ISBN13:978-1608312948. Physiological condition: Sympathetic innervation is known to undergo dynamic functional and/or anatomical changes during gestation. This has been observed in several species including rats and humans. Vera et al (1997) https://doi.org/10.1016/s0006-8993(96)01107-9.
In female rat, the sympathetic pre-ganglionic connection goes from T10 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to celiac ganglion- superior mesenteric ganglion complex or suprarenal ganglion via greater splanchnic nerve. This connection projects from the T9 segment of thoracic spinal cord and T10 segment of thoracic spinal cord.
Originally the population had as via "splanchnic nerve" but considering it is a communication between spinal cord and sympathetic chain "white rami communicantes" is representing the route more appropriately. Information on the splanchnic nerve comes from ISBN13:978-1608312948.
female T10 segment of thoracic spinal cord T9 segment of thoracic spinal cord (with-axon-in greater splanchnic nerve) (with-axon-presynaptic-element-in CSMG suprarenal ganglion) (projecting-onto neuron type femrep 38 neuron type femrep 40) neuron (implies Rattus norvegicus Sympathetic Pre-Ganglionic)
from T10 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to celiac ganglion- superior mesenteric ganglion complex or suprarenal ganglion via greater splanchnic nerve
I think the problem was that the URI for destination was only "celiac ganglion" while in the forward connection is "celiac ganglion- superior mesenteric ganglion complex" as it should be in rats. Now corrected it here.\nthis won't transition to exported. why?\nthis population needs to be updated.
celiac ganglion- superior mesenteric ganglion complex
coeliac-superior mesenteric ganglion complex
celiac ganglion to right ovary or left ovary via ovarian plexus nerve or superior ovarian nerve (minor contribution)
Laterality difference: The references indicate a laterality difference in the innervation of the ovary. Physiological condition: Sympathetic innervation is known to undergo dynamic functional and/or anatomical changes during gestation. This has been observed in several species including rats and humans. Vera et al (1997) https://doi.org/10.1016/s0006-8993(96)01107-9. Laterality difference: Pastelin 2017 and 2023 - SON innervation includes both ipsilateral and contralateral postganglionic fibers—i.e., some fibers cross to innervate the ovary from the opposite side's ganglia (Contralateral CG and SG also labeled when injecting True Blue (TB) tracer into the right ovary). OPN innervation appears mostly ipsilateral, with no contralateral fibers reported."
In female Norway rat, rat and rattus norvegicus, the sympathetic post-ganglionic connection goes from celiac ganglion- superior mesenteric ganglion complex to left ovary or right ovary via Superior ovarian nerve, ovarian nerve plexus. This connection projects from the celiac ganglion- superior mesenteric ganglion complex.
female CSMG (with-axons-in SON ovarian nerve plexus) (with-axon-presynaptic-element-in left ovary right ovary) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from celiac ganglion- superior mesenteric ganglion complex to left ovary or right ovary via Superior ovarian nerve, ovarian nerve plexus
I mean, how is this different from fem rep 38 (not 39)\nHow is this different than FemRep-39?
T9-T10 spinal cord to right superior mesenteric ganglion via greater splanchnic nerve
In female Norway rat, rat and rattus norvegicus, the sympathetic pre-ganglionic connection goes from T10 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to right superior mesenteric ganglion via greater splanchnic nerve. This connection projects from the T9 segment of thoracic spinal cord and T10 segment of thoracic spinal cord.
female T10 segment of thoracic spinal cord T9 segment of thoracic spinal cord (with-axon-in greater splanchnic nerve) (with-axon-presynaptic-element-in right superior mesenteric ganglion) (projecting-onto neuron type femrep 40-3) neuron (implies Rattus norvegicus Sympathetic Pre-Ganglionic)
from T10 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to right superior mesenteric ganglion via greater splanchnic nerve
right superior mesenteric ganglion to right ovary via ovarian plexus nerve
In female Norway rat, rat and rattus norvegicus, the sympathetic post-ganglionic connection goes from right superior mesenteric ganglion to right ovary via ovarian nerve plexus. This connection projects from the right superior mesenteric ganglion.
female right superior mesenteric ganglion (with-axon-in ovarian nerve plexus) (with-axon-presynaptic-element-in right ovary) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from right superior mesenteric ganglion to right ovary via ovarian nerve plexus
T1-L2 spinal cord to paravertebral sympathetic chain of L2-L4 via white rami communicantes
Connectivity ambiguity: In the absence of experimental data on the specific spinal cord level from which this connection arises, and as suggested by the knowledge expert, we decided to include all sympathetic spinal cord levels from T1 to L2. Spatial extent: Houdeau (1998) using retrograde tracing shows that the epicenter of the origin of the postganglionic fibers in the paravertebral sympathetic chain is at T12-L1, but the spread ranges from T10 to L2. Physiological condition: Sympathetic innervation is known to undergo dynamic functional and/or anatomical changes during gestation. This has been observed in several species including rats and humans. Vera et al (1997) https://doi.org/10.1016/s0006-8993(96)01107-9.
In female Norway rat, rat and rattus norvegicus, the sympathetic pre-ganglionic connection goes from lumbar subsegment of spinal cord or thoracic subsegment of spinal cord to Fourth lumbar ganglion or Second lumbar ganglion or Third lumbar ganglion via white ramus communicans. This connection projects from the lumbar subsegment of spinal cord and thoracic subsegment of spinal cord.
In light of the absense of experimental data on the level of the spinal cord that this connection arises from and suggested by the knowledge expert we decided to include all the sympathetic spinal cord from T1-L2.
female lumbar subsegment of spinal cord thoracic subsegment of spinal cord (with-axon-in white ramus communicans) (with-axon-presynaptic-element-in L2 sympathetic chain ganglion L3 sympathetic chain ganglion L4 sympathetic chain ganglion) (projecting-onto neuron type femrep 42 neuron type femrep 43 neuron type femrep 44) neuron (implies Rattus norvegicus Sympathetic Pre-Ganglionic)
from lumbar subsegment of spinal cord or thoracic subsegment of spinal cord to Fourth lumbar ganglion or Second lumbar ganglion or Third lumbar ganglion via white ramus communicans
paravertebral sympathetic chain of L2-L4 to smooth muscle of the lower uterus via lumbar splanchnic nerves via hypogastric nerve
In female Norway rat, rat and rattus norvegicus, the sympathetic post-ganglionic connection goes from Fourth lumbar ganglion or Second lumbar ganglion or Third lumbar ganglion to smooth muscle of the lower uterus via lumbar splanchnic nerve via hypogastric nerve. This connection projects from the Fourth lumbar ganglion, Second lumbar ganglion and Third lumbar ganglion.
female L2 sympathetic chain ganglion L3 sympathetic chain ganglion L4 sympathetic chain ganglion (with-axons-in hypogastric nerve lumbar splanchnic nerve) (with-axon-presynaptic-element-in smooth muscle of the lower uterus) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from Fourth lumbar ganglion or Second lumbar ganglion or Third lumbar ganglion to smooth muscle of the lower uterus via lumbar splanchnic nerve via hypogastric nerve
does this export remove the alternate names for rat (norway rat; rattus norvenigus)? those labels were removed from Composer.
paravertebral sympathetic chain of L2-L4 to blood vessel of the lower uterus via lumbar splanchnic nerves via hypogastric nerve
In female Norway rat, rat and rattus norvegicus, the sympathetic post-ganglionic connection goes from Fourth lumbar ganglion or Second lumbar ganglion or Third lumbar ganglion to blood vessel of the lower uterus via lumbar splanchnic nerve via hypogastric nerve. This connection projects from the Fourth lumbar ganglion, Second lumbar ganglion and Third lumbar ganglion.
Curator, Dr. Ilias Ziogas changed the original destination "lower uterine blood vessel of the myometrium or endometrium" to "blood vessel of the lower uterus" that covers the vasculature of the lower uterine segment. Information on the splanchnic nerve comes from ISBN13:978-1608312948.
female L2 sympathetic chain ganglion L3 sympathetic chain ganglion L4 sympathetic chain ganglion (with-axons-in hypogastric nerve lumbar splanchnic nerve) (with-axon-presynaptic-element-in blood vessel of the lower uterus) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from Fourth lumbar ganglion or Second lumbar ganglion or Third lumbar ganglion to blood vessel of the lower uterus via lumbar splanchnic nerve via hypogastric nerve
paravertebral sympathetic chain of L2-L4 to uterine cervix via lumbar splanchnic nerves via hypogastric nerve
In female Norway rat, rat and rattus norvegicus, the sympathetic post-ganglionic connection goes from Fourth lumbar ganglion or Second lumbar ganglion or Third lumbar ganglion to uterine cervix via lumbar splanchnic nerve via hypogastric nerve. This connection projects from the Fourth lumbar ganglion, Second lumbar ganglion and Third lumbar ganglion.
female L2 sympathetic chain ganglion L3 sympathetic chain ganglion L4 sympathetic chain ganglion (with-axons-in hypogastric nerve lumbar splanchnic nerve) (with-axon-presynaptic-element-in uterine cervix) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from Fourth lumbar ganglion or Second lumbar ganglion or Third lumbar ganglion to uterine cervix via lumbar splanchnic nerve via hypogastric nerve
intermediolateral nucleus of L6-S1 to major pelvic ganglion via pelvic splanchnic nerve
In female Norway rat, rat and rattus norvegicus, the parasympathetic pre-ganglionic connection goes from Intermediolateral nucleus of first sacral segment or Intermediolateral nucleus of sixth lumbar segment to major pelvic ganglion via pelvic splanchnic nerve. This connection projects from the Intermediolateral nucleus of sixth lumbar segment and Intermediolateral nucleus of first sacral segment.
female Intermediolateral nucleus of first sacral segment Intermediolateral nucleus of sixth lumbar segment (with-axon-in pelvic splanchnic nerve) (with-axon-presynaptic-element-in MPG) (projecting-onto neuron type femrep 53 neuron type femrep 54 neuron type femrep 55 neuron type femrep 56) neuron (implies Rattus norvegicus Parasympathetic Pre-Ganglionic)
from Intermediolateral nucleus of first sacral segment or Intermediolateral nucleus of sixth lumbar segment to major pelvic ganglion via pelvic splanchnic nerve
major pelvic ganglion to uterine blood vessels via postganglionic nerve
In female Norway rat, rat and rattus norvegicus, the parasympathetic post-ganglionic connection goes from major pelvic ganglion to blood vessel of the uterus via postganglionic parasympathetic fiber. This connection projects from the major pelvic ganglion.
female MPG (with-axon-in postganglionic parasympathetic fiber) (with-axon-presynaptic-element-in blood vessel of the uterus) neuron (implies Rattus norvegicus Parasympathetic Post-Ganglionic)
from major pelvic ganglion to blood vessel of the uterus via postganglionic parasympathetic fiber
major pelvic ganglion to myometrium via postganglionic nerve
In female Norway rat, rat and rattus norvegicus, the parasympathetic post-ganglionic connection goes from major pelvic ganglion to myometrium via postganglionic parasympathetic fiber. This connection projects from the major pelvic ganglion.
female MPG (with-axon-in postganglionic parasympathetic fiber) (with-axon-presynaptic-element-in myometrium) neuron (implies Rattus norvegicus Parasympathetic Post-Ganglionic)
from major pelvic ganglion to myometrium via postganglionic parasympathetic fiber
major pelvic ganglion to the uterine endometrium via postganglionic nerve
In female Norway rat, rat and rattus norvegicus, the parasympathetic post-ganglionic connection goes from major pelvic ganglion to endometrium via postganglionic parasympathetic fiber. This connection projects from the major pelvic ganglion.
female MPG (with-axon-in postganglionic parasympathetic fiber) (with-axon-presynaptic-element-in endometrium) neuron (implies Rattus norvegicus Parasympathetic Post-Ganglionic)
from major pelvic ganglion to endometrium via postganglionic parasympathetic fiber
major pelvic ganglion to uterine cervix via postganglionic nerve
In female Norway rat, rat and rattus norvegicus, the parasympathetic post-ganglionic connection goes from major pelvic ganglion to uterine cervix via postganglionic parasympathetic fiber. This connection projects from the major pelvic ganglion.
female MPG (with-axon-in postganglionic parasympathetic fiber) (with-axon-presynaptic-element-in uterine cervix) neuron (implies Rattus norvegicus Parasympathetic Post-Ganglionic)
from major pelvic ganglion to uterine cervix via postganglionic parasympathetic fiber
Intermediolateral nucleus of sixth lumbar segment
Intermediolateral nucleus of first sacral segment
Parasympathetic Pre-Ganglionic phenotype
Parasympathetic Post-Ganglionic phenotype
T13-L4 dorsal root ganglion with axon sensory terminal in upper uterine segment via hypogastric nerve with axon terminal in T13-L4 spinal cord via T13-L4 dorsal roots of spinal cord
In female rat, the connection goes from first lumbar dorsal root ganglion or fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion or thirteenth thoracic dorsal root ganglion to L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord or Thirteenth thoracic spinal cord segment via Posterior root of first lumbar nerve, Posterior root of fourth lumbar nerve, Posterior root of second lumbar nerve, Posterior root of third lumbar nerve, Posterior root of thirteenth thoracic nerve; from first lumbar dorsal root ganglion or fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion or thirteenth thoracic dorsal root ganglion to upper uterine segment via hypogastric nerve. This sensory connection projects from the first lumbar dorsal root ganglion, fourth lumbar dorsal root ganglion, second lumbar dorsal root ganglion, third lumbar dorsal root ganglion and thirteenth thoracic dorsal root ganglion.
female first lumbar dorsal root ganglion fourth lumbar dorsal root ganglion second lumbar dorsal root ganglion third lumbar dorsal root ganglion thirteenth thoracic dorsal root ganglion (with-axons-in Posterior root of first lumbar nerve Posterior root of fourth lumbar nerve Posterior root of second lumbar nerve Posterior root of third lumbar nerve Posterior root of thirteenth thoracic nerve) (with-axon-presynaptic-element-in L1 segment of lumbar spinal cord L2 segment of lumbar spinal cord L3 segment of lumbar spinal cord L4 segment of lumbar spinal cord T13 segment of thoracic spinal cord) (implies Rattus norvegicus sensory neuron)
from first lumbar dorsal root ganglion or fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion or thirteenth thoracic dorsal root ganglion to L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord or Thirteenth thoracic spinal cord segment via Posterior root of first lumbar nerve, Posterior root of fourth lumbar nerve, Posterior root of second lumbar nerve, Posterior root of third lumbar nerve, Posterior root of thirteenth thoracic nerve from first lumbar dorsal root ganglion or fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion or thirteenth thoracic dorsal root ganglion to upper uterine segment via hypogastric nerve
updated to include hypogastric nerve as axon leading to sensory terminal\nUpdated routing to include dorsal root of spinal cord in the path\nneeds phenotype
Posterior root of thirteenth thoracic nerve
thirteenth thoracic dorsal root ganglion
the implementation of the sensor in a sensory neuron is essentially arbitrary with respect to subcompartment and projection pattern
T13-L4 dorsal root ganglion with axon sensory terminal in ovary via hypogastric nerve with axon terminal in T13-L4 spinal cord via T13-L4 dorsal roots of spinal cord
In female rat, the connection goes from first lumbar dorsal root ganglion or fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion or thirteenth thoracic dorsal root ganglion to L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord or Thirteenth thoracic spinal cord segment via Posterior root of first lumbar nerve, Posterior root of fourth lumbar nerve, Posterior root of second lumbar nerve, Posterior root of third lumbar nerve, Posterior root of thirteenth thoracic nerve; from first lumbar dorsal root ganglion or fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion or thirteenth thoracic dorsal root ganglion to ovary via hypogastric nerve. This sensory connection projects from the first lumbar dorsal root ganglion, fourth lumbar dorsal root ganglion, second lumbar dorsal root ganglion, third lumbar dorsal root ganglion and thirteenth thoracic dorsal root ganglion.
from first lumbar dorsal root ganglion or fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion or thirteenth thoracic dorsal root ganglion to L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord or Thirteenth thoracic spinal cord segment via Posterior root of first lumbar nerve, Posterior root of fourth lumbar nerve, Posterior root of second lumbar nerve, Posterior root of third lumbar nerve, Posterior root of thirteenth thoracic nerve from first lumbar dorsal root ganglion or fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion or thirteenth thoracic dorsal root ganglion to ovary via hypogastric nerve
updated to include hypogastric nerve as axon leading to sensory terminal.\nadjusted vias to correct partial order issue.
female organism reproductive system gonad
female organism reproductive system gonada
gonad of female organism reproductive system
gonad of reproductive system of female organism
gonada of female organism reproductive system
gonada of reproductive system of female organism
reproductive system of female organism gonad
reproductive system of female organism gonada
L6-S2 dorsal root ganglion with axon sensory terminal in lower uterine segment via pelvic nerve with axon terminal in L6-S2 spinal cord via L6-S2 dorsal roots of spinal cord
In female Norway rat, rat and rattus norvegicus, the connection goes from first sacral dorsal root ganglion or second sacral dorsal root ganglion or sixth lumbar dorsal root ganglion to L6 segment of lumbar spinal cord or S1 segment of sacral spinal cord or S2 segment of sacral spinal cord via Posterior root of first sacral nerve, Posterior root of second sacral nerve, Posterior root of sixth lumbar nerve; from first sacral dorsal root ganglion or second sacral dorsal root ganglion or sixth lumbar dorsal root ganglion to lower uterine segment via pelvic splanchnic nerve. This sensory connection projects from the first sacral dorsal root ganglion, second sacral dorsal root ganglion and sixth lumbar dorsal root ganglion.
female first sacral dorsal root ganglion second sacral dorsal root ganglion sixth lumbar dorsal root ganglion (with-axons-in Posterior root of first sacral nerve Posterior root of second sacral nerve Posterior root of sixth lumbar nerve) (with-axon-presynaptic-element-in L6 S1 segment of sacral spinal cord S2 segment of sacral spinal cord) (implies Rattus norvegicus sensory neuron)
from first sacral dorsal root ganglion or second sacral dorsal root ganglion or sixth lumbar dorsal root ganglion to L6 segment of lumbar spinal cord or S1 segment of sacral spinal cord or S2 segment of sacral spinal cord via Posterior root of first sacral nerve, Posterior root of second sacral nerve, Posterior root of sixth lumbar nerve from first sacral dorsal root ganglion or second sacral dorsal root ganglion or sixth lumbar dorsal root ganglion to lower uterine segment via pelvic splanchnic nerve
updated to include pelvic splanchnic nerve as axon leading to sensory terminal based on the uberon identity. A2BvC just lists pelvic nerve, should it be updated?\n@Sue yes it would be very helpful to use "axon leading to sensory terminal" for pelvic splanchnic nerve but I don't see it in the dropdown menu.\nWe also now have axon leading to sensory target as an option in Composer, is it helpful to use it?\nI believe that for the purposes of visualization, we always route segments through their respective DRGs. I think that all DRG connections should probably have the same note about this convention because it is likely not true.\nUpdated the population diagram to list the segments in anatomical order. Ilias, let's get a decision on this routing through the dorsal root generic vs individual segment dorsal root? if we can create a consistent rule, that would be great.\nFemRep62\nRegarding whether we should be using the generic term "dorsal root of spinal cord" or the specific level this is a complicated issue. I would prefer to use the generic term because stating the dorsal roots (i.e. L2-L6) based on the DRGs (L2-L6) they found labeled cells is a logical assumption. Perhaps the routing of the axons to the dorsal horn is more complicated. But for modelling reasons I think using the segments individually will make the maps look better. Perhaps we can discuss this tomorrow in Kcore meeting.\n@illias - It would be good to know what is needed with respect to the "general" term dorsal root of spinal cord, instead of the individual anatomies per segment that we have done elsewhere please.\nWhat do we do with the dorsal root of spinal cord via?\nWhat do we do with the "dorsal root of spinal cord" via?
L6-S2 dorsal root ganglion with axon sensory terminal in uterine cervix via pelvic nerve with axon terminal in L6-S2 spinal cord via L6-S2 dorsal roots of spinal cord
In female rat, the connection goes from first sacral dorsal root ganglion or second sacral dorsal root ganglion or sixth lumbar dorsal root ganglion to L6 segment of lumbar spinal cord or S1 segment of sacral spinal cord or S2 segment of sacral spinal cord via Posterior root of first sacral nerve, Posterior root of second sacral nerve, Posterior root of sixth lumbar nerve; from first sacral dorsal root ganglion or second sacral dorsal root ganglion or sixth lumbar dorsal root ganglion to uterine cervix via pelvic splanchnic nerve. This sensory connection projects from the first sacral dorsal root ganglion, second sacral dorsal root ganglion and sixth lumbar dorsal root ganglion.
from first sacral dorsal root ganglion or second sacral dorsal root ganglion or sixth lumbar dorsal root ganglion to L6 segment of lumbar spinal cord or S1 segment of sacral spinal cord or S2 segment of sacral spinal cord via Posterior root of first sacral nerve, Posterior root of second sacral nerve, Posterior root of sixth lumbar nerve from first sacral dorsal root ganglion or second sacral dorsal root ganglion or sixth lumbar dorsal root ganglion to uterine cervix via pelvic splanchnic nerve
updated to include pelvic splanchnic nerve as axon leading to sensory terminal. A2BvC lists only pelvic nerve. Should it be updated?\nWhat do we do with "dorsal root of spinal cord" via?
nodose ganglion with axon sensory terminal in uterus or uterine cervix via abdominal vagal nerve with axon terminal in nucleus of the tractus solitarius via vagus nerve
In female rat, the connection goes from inferior vagus X ganglion to uterine cervix or uterus via abdominal branch of vagus nerve; from inferior vagus X ganglion to nucleus of solitary tract via vagus nerve. This sensory connection projects from the inferior vagus X ganglion.
female inferior vagus X ganglion (with-axon-in 10n) (with-axon-presynaptic-element-in nucleus of solitary tract) (implies Rattus norvegicus sensory neuron)
from inferior vagus X ganglion to uterine cervix or uterus via abdominal branch of vagus nerve from inferior vagus X ganglion to nucleus of solitary tract via vagus nerve
NOTE: there are 2 different ILX identifiers for abdominal branch of vagus nerve in Composer's anatomical entity table.\nupdated to include abdominal branch of vagus nerve as axon leading to sensory terminal.
nucleus tractus solitarii medullae oblongatae
T10-L1 spinal cord to pelvic ganglion via superior hypogastric plexus via hypogastric nerve via inferior hypogastric plexus
Spatial extent: The spinal levels T10-L1 are mentioned in the references below as the sympathetic innervation of the female reproductive system arises from the superior hypogastric plexus, which in turn arises mainly from the spinal levels mentioned above. Janig et al (1987), table 2, shows these spinal levels as origins of the preganglionic fibers innervating the female reproductive organs. This is supported also by Gray’s Anatomy (40th edition) which states that sympathetic fibers to the uterus are derived from neurons in the last thoracic and first lumbar segments. However, often the splanchnic nerves to the abdomen and pelvis are grouped into “abdominopelvic splanchnic nerves” (see Clinically Oriented Anatomy, Lippincott Williams and Wilkins, 5th ed). It’s possible that the preganglionic neurons spread between T5-L4 with an epicenter at T10-L1. Physiological condition: Sympathetic innervation is known to undergo dynamic functional and/or anatomical changes during gestation. This has been observed in several species including rats and humans. Vera et al (1997) https://doi.org/10.1016/s0006-8993(96)01107-9.
In female human, the sympathetic pre-ganglionic connection goes from L1 segment of lumbar spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord to pelvic ganglion via superior hypogastric nerve plexus via hypogastric nerve via inferior hypogastric nerve plexus. This connection projects from the L1 segment of lumbar spinal cord, T10 segment of thoracic spinal cord, T11 segment of thoracic spinal cord and T12 segment of thoracic spinal cord.
female L1 segment of lumbar spinal cord T10 segment of thoracic spinal cord T11 segment of thoracic spinal cord T12 segment of thoracic spinal cord (with-axons-in hypogastric nerve inferior hypogastric nerve plexus superior hypogastric nerve plexus) (with-axon-presynaptic-element-in pelvic ganglion) (projecting-onto neuron type femrep 67 neuron type femrep 68 neuron type femrep 69 neuron type femrep 70 neuron type femrep 71 neuron type femrep 72 neuron type femrep 82 neuron type femrep 83) neuron (implies Homo sapiens Sympathetic Pre-Ganglionic)
from L1 segment of lumbar spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord to pelvic ganglion via superior hypogastric nerve plexus via hypogastric nerve via inferior hypogastric nerve plexus
This alert should be added: Alert: The spinal levels T10-L1 are mentioned in the references below as the sympathetic innervation of the female reproductive system arises from the superior hypogastric plexus, which in turn arises mainly from the spinal levels mentioned above. Janig et al (1987), table 2, shows these spinal levels as origins of the preganglionic fibers innervating the female reproductive organs. This is supported also by Gray’s Anatomy (40th edition) which states that sympathetic fibers to the uterus are derived from neurons in the last thoracic and first lumbar segments. However, often the splanchnic nerves to the abdomen and pelvis are grouped into “abdominopelvic splanchnic nerves” (see Clinically Oriented Anatomy, Lippincott Williams and Wilkins, 5th ed). It’s possible that the preganglionic neurons spread between T5-L4 with an epicenter at T10-L1.
pelvic ganglion to uterine myometrium via uterovaginal plexus via postganglionic nerve
In female human, the sympathetic post-ganglionic connection goes from pelvic ganglion to myometrium via uterovaginal nerve plexus via postganglionic sympathetic fiber. This connection projects from the pelvic ganglion.
female pelvic ganglion (with-axons-in postganglionic sympathetic fiber uterovaginal nerve plexus) (with-axon-presynaptic-element-in myometrium) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from pelvic ganglion to myometrium via uterovaginal nerve plexus via postganglionic sympathetic fiber
pelvic ganglion to helicine branch of uterine artery of uterus via uterovaginal plexus via postganglionic nerve
In female human, the sympathetic post-ganglionic connection goes from pelvic ganglion to helicine branch of uterine artery via uterovaginal nerve plexus via postganglionic sympathetic fiber. This connection projects from the pelvic ganglion.
female pelvic ganglion (with-axons-in postganglionic sympathetic fiber uterovaginal nerve plexus) (with-axon-presynaptic-element-in helicine branch of uterine artery) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from pelvic ganglion to helicine branch of uterine artery via uterovaginal nerve plexus via postganglionic sympathetic fiber
pelvic ganglion to smooth muscle of cervix via uterovaginal plexus via postganglionic nerve
In female human, the sympathetic post-ganglionic connection goes from pelvic ganglion to smooth muscle of the cervix via uterovaginal nerve plexus via postganglionic sympathetic fiber. This connection projects from the pelvic ganglion.
female pelvic ganglion (with-axons-in postganglionic sympathetic fiber uterovaginal nerve plexus) (with-axon-presynaptic-element-in smooth muscle of the cervix) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from pelvic ganglion to smooth muscle of the cervix via uterovaginal nerve plexus via postganglionic sympathetic fiber
pelvic ganglion to uterine artery of the cervix via uterovaginal plexus via postganglionic nerve
Sympathetic innervation is known to undergo dynamic functional and/or anatomical changes during gestation. This has been observed in several species including rats and humans. Vera et al (1997) https://doi.org/10.1016/s0006-8993(96)01107-9.
In female human, the sympathetic post-ganglionic connection goes from pelvic ganglion to uterine artery via uterovaginal nerve plexus via postganglionic sympathetic fiber. This connection projects from the pelvic ganglion.
female pelvic ganglion (with-axons-in postganglionic sympathetic fiber uterovaginal nerve plexus) (with-axon-presynaptic-element-in uterine artery) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from pelvic ganglion to uterine artery via uterovaginal nerve plexus via postganglionic sympathetic fiber
pelvic ganglion to smooth muscle of vagina via uterovaginal plexus via postganglionic nerve
In female human, the sympathetic post-ganglionic connection goes from pelvic ganglion to vagina smooth muscle via uterovaginal nerve plexus via postganglionic sympathetic fiber. This connection projects from the pelvic ganglion.
female pelvic ganglion (with-axons-in postganglionic sympathetic fiber uterovaginal nerve plexus) (with-axon-presynaptic-element-in vagina smooth muscle) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from pelvic ganglion to vagina smooth muscle via uterovaginal nerve plexus via postganglionic sympathetic fiber
pelvic ganglion to blood vessel of vagina via uterovaginal plexus via postganglionic nerve
In female human, the sympathetic post-ganglionic connection goes from pelvic ganglion to blood vessel of the vagina via uterovaginal nerve plexus via postganglionic sympathetic fiber. This connection projects from the pelvic ganglion.
female pelvic ganglion (with-axons-in postganglionic sympathetic fiber uterovaginal nerve plexus) (with-axon-presynaptic-element-in blood vessel of the vagina) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from pelvic ganglion to blood vessel of the vagina via uterovaginal nerve plexus via postganglionic sympathetic fiber
pelvic ganglion to dorsal artery of clitoris via uterovaginal plexus via postganglionic nerve
In female human, the sympathetic post-ganglionic connection goes from pelvic ganglion to dorsal artery of clitoris via uterovaginal nerve plexus via postganglionic sympathetic fiber. This connection projects from the pelvic ganglion.
female pelvic ganglion (with-axons-in postganglionic sympathetic fiber uterovaginal nerve plexus) (with-axon-presynaptic-element-in dorsal artery of clitoris) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from pelvic ganglion to dorsal artery of clitoris via uterovaginal nerve plexus via postganglionic sympathetic fiber
pelvic ganglion to clitoral smooth muscle via uterovaginal plexus via postganglionic nerve
In female human, the sympathetic post-ganglionic connection goes from pelvic ganglion to clitoral smooth muscle via uterovaginal nerve plexus via postganglionic sympathetic fiber. This connection projects from the pelvic ganglion.
female pelvic ganglion (with-axons-in postganglionic sympathetic fiber uterovaginal nerve plexus) (with-axon-presynaptic-element-in clitoral smooth muscle) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from pelvic ganglion to clitoral smooth muscle via uterovaginal nerve plexus via postganglionic sympathetic fiber
T10-L2 spinal cord to ovarian ganglion via celiac plexus via superior mesenteric plexus via intermesenteric plexus via superior hypogastric plexus via hypogastric nerve via inferior hypogastric plexus
In female human, the sympathetic pre-ganglionic connection goes from L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord to ovarian ganglion via celiac nerve plexus via superior mesenteric plexus via intermesenteric plexus via superior hypogastric nerve plexus via hypogastric nerve via inferior hypogastric nerve plexus. This connection projects from the L2 segment of lumbar spinal cord, L1 segment of lumbar spinal cord, T10 segment of thoracic spinal cord, T11 segment of thoracic spinal cord and T12 segment of thoracic spinal cord.
Dr. Caroline Cobine suggested: "T5-L2 spinal cord (greater, lesser, least and lumbar splanchnic nerves) to ovarian plexus via celiac plexus via superior mesenteric plexus via intermesenteric plexus via superior hypogastric plexus via hypogastric nerve via inferior hypogastric plexus". I kept the epicenter for the origin mentioned by Sokol.
female L1 segment of lumbar spinal cord L2 segment of lumbar spinal cord T10 segment of thoracic spinal cord T11 segment of thoracic spinal cord T12 segment of thoracic spinal cord (with-axons-in celiac nerve plexus hypogastric nerve inferior hypogastric nerve plexus intermesenteric plexus superior hypogastric nerve plexus superior mesenteric plexus) (with-axon-presynaptic-element-in ovarian ganglion) (projecting-onto neuron type femrep 74) neuron (implies Homo sapiens Sympathetic Pre-Ganglionic)
from L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord to ovarian ganglion via celiac nerve plexus via superior mesenteric plexus via intermesenteric plexus via superior hypogastric nerve plexus via hypogastric nerve via inferior hypogastric nerve plexus
This was originally "ovarian plexus" when the expert reviewed this population because the place of synapse was mentioned as the plexus in the references. I had added the term "ovarian nerve plexus sympathetic ganglion" when I modeled the population because the origin or destination should be a ganglion but since this term was deprecated (for unknown reasons to me) we changed it to "ovarian ganglion" that existed. If we want to be consistent we will create the term "ovarian nerve plexus ganglion". https://scicrunch.org/sawg/interlex/view/ilx_0794733?searchTerm=ovarian%20nerve%20plexus%20sympathetic%20ganglion\nI don't think that ijt should be "ovarian ganglion" as I don't think such a structure exists. It should be "ovarian nerve plexus ganglion". Ilias, can you check that the references are correct? I can't find any of the information in this population in the articles that I saw.
ovarian ganglion to smooth muscle of the isthmus or ampulla of the Fallopian tube via postganglionic nerve
In female human, the sympathetic post-ganglionic connection goes from ovarian ganglion to ampulla of fallopian tube or smooth muscle of the isthmus of the Fallopian tube via postganglionic sympathetic fiber. This connection projects from the ovarian ganglion.
female ovarian ganglion (with-axon-in postganglionic sympathetic fiber) (with-axon-presynaptic-element-in ampulla of fallopian tube smooth muscle of the isthmus of the Fallopian tube) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from ovarian ganglion to ampulla of fallopian tube or smooth muscle of the isthmus of the Fallopian tube via postganglionic sympathetic fiber
I find it helpful to have a postganglionic nerve fiber. We do that often with other populations too, especially the parasympathetic postganglionic that are short as they synapse usually close to the end organ. Do I get your questions right?\nIlias this is another type of population that could be unified - by not listing the Via? since it doesn't have a name, or anything to anchor it to an anatomical location as it traverses between origin and destination?\nIlias - can you review this and point me towards the spreadsheets for these populations? thanks!
smooth muscle of the isthmus of the Fallopian tube
T10-L2 spinal cord to aorticorenal ganglion via lesser splanchnic nerve or lumbar splanchnic nerves
In female human, the sympathetic pre-ganglionic connection goes from L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord to aorticorenal ganglion via lesser splanchnic nerve, lumbar splanchnic nerve. This connection projects from the L2 segment of lumbar spinal cord, L1 segment of lumbar spinal cord, T10 segment of thoracic spinal cord, T11 segment of thoracic spinal cord and T12 segment of thoracic spinal cord.
Dr. Caroline Cobine cited "The spinal levels are from Gray’s Anatomy 40th edition, page 1293". The statement was corrected by Dr. Caroline Cobine and it became: "via lesser splanchnic nerve OR first OR second lumbar splanchnic nerves". But we can say simply Lumbar splanchnic nerves because the term refers to L1 and L2 only. So we avoid creating extra terms.
female L1 segment of lumbar spinal cord L2 segment of lumbar spinal cord T10 segment of thoracic spinal cord T11 segment of thoracic spinal cord T12 segment of thoracic spinal cord (with-axons-in lesser splanchnic nerve lumbar splanchnic nerve) (with-axon-presynaptic-element-in aorticorenal ganglion) (projecting-onto neuron type femrep 76) neuron (implies Homo sapiens Sympathetic Pre-Ganglionic)
from L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord to aorticorenal ganglion via lesser splanchnic nerve, lumbar splanchnic nerve
Aorticorenal ganglion to distal ampulla OR fimbriae of the uterine tube via superior mesenteric plexus via intermesenteric plexus via inferior mesenteric plexus via superior hypogastric plexus via hypogastric nerve via inferior hypogastric plexus via ovarian plexus
In female human, the sympathetic post-ganglionic connection goes from aorticorenal ganglion to ampulla of fallopian tube or fimbria of fallopian tube via superior mesenteric plexus via intermesenteric plexus via inferior mesenteric nerve plexus via superior hypogastric nerve plexus via hypogastric nerve via inferior hypogastric nerve plexus via ovarian nerve plexus. This connection projects from the aorticorenal ganglion.
Dr. Caroline Cobine corrected the statement and listed all the vias and left the following comment: "The renal plexus is a subdivision of the intermesenteric plexus (formed by the contribution of the L1 and L2 splanchnic nerves). I ordered these from distal to proximal (organ to originating ganglion), not sure if this is the correct way to do this." Curator, Dr. Ilias Ziogas corrected the order of the vias from proximal to distal.
female aorticorenal ganglion (with-axons-in hypogastric nerve inferior hypogastric nerve plexus inferior mesenteric nerve plexus intermesenteric plexus ovarian nerve plexus superior hypogastric nerve plexus superior mesenteric plexus) (with-axon-presynaptic-element-in ampulla of fallopian tube fimbria of fallopian tube) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from aorticorenal ganglion to ampulla of fallopian tube or fimbria of fallopian tube via superior mesenteric plexus via intermesenteric plexus via inferior mesenteric nerve plexus via superior hypogastric nerve plexus via hypogastric nerve via inferior hypogastric nerve plexus via ovarian nerve plexus
T10-T11 spinal cord to ovarian ganglion via celiac plexus via superior mesenteric plexus via intermesenteric plexus via superior hypogastric plexus via hypogastric nerve via inferior hypogastric plexus
In female human, the sympathetic pre-ganglionic connection goes from T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord to ovarian ganglion via celiac nerve plexus via superior mesenteric plexus via intermesenteric plexus via superior hypogastric nerve plexus via hypogastric nerve via inferior hypogastric nerve plexus. This connection projects from the T10 segment of thoracic spinal cord and T11 segment of thoracic spinal cord.
female T10 segment of thoracic spinal cord T11 segment of thoracic spinal cord (with-axons-in celiac nerve plexus hypogastric nerve inferior hypogastric nerve plexus intermesenteric plexus superior hypogastric nerve plexus superior mesenteric plexus) (with-axon-presynaptic-element-in ovarian ganglion) (projecting-onto neuron type femrep 78 neuron type femrep 79 neuron type femrep 80) neuron (implies Homo sapiens Sympathetic Pre-Ganglionic)
from T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord to ovarian ganglion via celiac nerve plexus via superior mesenteric plexus via intermesenteric plexus via superior hypogastric nerve plexus via hypogastric nerve via inferior hypogastric nerve plexus
corrected destination to be ovarian ganglion.\nis this the correct destination, Ilias?\nUPDATE - added the correct anatomical entity that was in fact missing. (sorry about the confusion) http://uri.interlex.org/base/ilx_0794733 was added to the anatomical table today 27 June via admin interface.\nASK ILIAS: The "missing" URI is the ovarian nerve plexus parasympathic ganglion, http://uri.interlex.org/base/ilx_0794733, however - this connection is labeled as being a sympathetic connection. Is this correct? \nNeed Confirmation.\nupdated the species to human readable form only. anatomical entity that is said to missing is confirmed to be in the anatomical table, so not sure if this is impacted by https://github.com/MetaCell/sckan-composer/issues/278#issuecomment-2154805377
ovarian ganglion to ovary stroma via ovarian nerve plexus
In female human, the sympathetic post-ganglionic connection goes from ovarian ganglion to ovary stroma via ovarian nerve plexus. This connection projects from the ovarian ganglion.
female ovarian ganglion (with-axon-in ovarian nerve plexus) (with-axon-presynaptic-element-in ovary stroma) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from ovarian ganglion to ovary stroma via ovarian nerve plexus
new ILX term is available for ovarian ganglion. updating as needed.\nconfirm origin please\nASK ILIAS: the population phenotype is marked as sympathetic, but the ganglion origin is idenitified as parasymapthetic, http://uri.interlex.org/base/ilx_0794733. The name is mismatched between composer and interlex
ovarian ganglion to ovarian artery via ovarian nerve plexus
In female human, the sympathetic post-ganglionic connection goes from ovarian ganglion to ovarian artery via ovarian nerve plexus. This connection projects from the ovarian ganglion.
female ovarian ganglion (with-axon-in ovarian nerve plexus) (with-axon-presynaptic-element-in ovarian artery) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from ovarian ganglion to ovarian artery via ovarian nerve plexus
Origin is updated to match curator text.\nconfirm origin please\nupdated connections to include the missing origin term by adding it to the anatomical table.\nupdated species to common name.
ovarian ganglion to ovarian follicle of the ovary via ovarian nerve plexus
In female human, the sympathetic post-ganglionic connection goes from ovarian ganglion to ovarian follicle via ovarian nerve plexus. This connection projects from the ovarian ganglion.
Curator Dr. Ilias Ziogas added "ovarian follicle" because the reference Helm (1981) 10.1095/biolreprod25.1.227 mentions the innervation reaches the endocrine cells and the part of the ovary that acts as endocrine tissue is the ovarian follicle.
female ovarian ganglion (with-axon-in ovarian nerve plexus) (with-axon-presynaptic-element-in ovarian follicle) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from ovarian ganglion to ovarian follicle via ovarian nerve plexus
Origin updated to curator statement\nConfirm origin please\nupdated missing origin after adding the term to the anatomical table.\nupdated species to human readable label instead of both latin and familiar term.
follicle of ovary viewed macroscopically
S2-S4 sacral parasympathetic nucleus to pelvic ganglion via anterior ramI of S2‒S4 spinal cord via pelvic splanchnic nerves via inferior hypogastric plexus
Cross-species inference: The source mentions that the parasympathetic neurons arise from the ventral rami of S2‒S4 spinal nerves but the origin (where the somata are located) is not mentioned explicitly. The somata are expected to be in the sacral parasympathetic nucleus.
In female human, the parasympathetic pre-ganglionic connection goes from S2 sacral parasympathetic nucleus or S3 sacral parasympathetic nucleus or S4 sacral parasympathetic nucleus to pelvic ganglion via Anterior ramus of fourth sacral nerve, Anterior ramus of second sacral nerve, Anterior ramus of third sacral nerve via pelvic splanchnic nerve via inferior hypogastric nerve plexus. This connection projects from the S2 sacral parasympathetic nucleus, S3 sacral parasympathetic nucleus and S4 sacral parasympathetic nucleus.
female S2 sacral parasympathetic nucleus S3 sacral parasympathetic nucleus S4 sacral parasympathetic nucleus (with-axons-in Anterior ramus of fourth sacral nerve Anterior ramus of second sacral nerve Anterior ramus of third sacral nerve inferior hypogastric nerve plexus pelvic splanchnic nerve) (with-axon-presynaptic-element-in pelvic ganglion) (projecting-onto neuron type femrep 85 neuron type femrep 86 neuron type femrep 87 neuron type femrep 88 neuron type femrep 89 neuron type femrep 90 neuron type femrep 91 neuron type femrep 92 neuron type femrep 93 neuron type femrep 94) neuron (implies Homo sapiens Parasympathetic Pre-Ganglionic)
from S2 sacral parasympathetic nucleus or S3 sacral parasympathetic nucleus or S4 sacral parasympathetic nucleus to pelvic ganglion via Anterior ramus of fourth sacral nerve, Anterior ramus of second sacral nerve, Anterior ramus of third sacral nerve via pelvic splanchnic nerve via inferior hypogastric nerve plexus
This Alert should be added: The source mentions that the parasympathetic neurons arise from the ventral rami of S2‒S4 spinal nerves but the origin (where the somata are located) is not mentioned explicitly. The somata are expected to be in the sacral parasympathetic nucleus.\nAdded also an alert.\nI corrected this populations. The ventral rami are axons. The origin was missing. It is a parasympathetic population.\nIlias, I'm confused about the origins for this population. It's in the ventral rami? not the sympathetic chain ganglia for these segments?
pelvic ganglion to the blood vessel of the vagina via uterovaginal plexus via postganglionic nerve
In female human, the parasympathetic post-ganglionic connection goes from pelvic ganglion to blood vessel of the vagina via uterovaginal nerve plexus via postganglionic parasympathetic fiber. This connection projects from the pelvic ganglion.
female pelvic ganglion (with-axons-in postganglionic parasympathetic fiber uterovaginal nerve plexus) (with-axon-presynaptic-element-in blood vessel of the vagina) neuron (implies Homo sapiens Parasympathetic Post-Ganglionic)
from pelvic ganglion to blood vessel of the vagina via uterovaginal nerve plexus via postganglionic parasympathetic fiber
pelvic ganglion to the epithelium of the vagina via uterovaginal plexus via postganglionic nerve
In female human, the parasympathetic post-ganglionic connection goes from pelvic ganglion to epithelium of vagina via uterovaginal nerve plexus via postganglionic parasympathetic fiber. This connection projects from the pelvic ganglion.
female pelvic ganglion (with-axons-in postganglionic parasympathetic fiber uterovaginal nerve plexus) (with-axon-presynaptic-element-in epithelium of vagina) neuron (implies Homo sapiens Parasympathetic Post-Ganglionic)
from pelvic ganglion to epithelium of vagina via uterovaginal nerve plexus via postganglionic parasympathetic fiber
pelvic ganglion to the smooth muscle of the vagina via uterovaginal plexus via postganglionic nerve
In female human, the parasympathetic post-ganglionic connection goes from pelvic ganglion to vagina smooth muscle via uterovaginal nerve plexus via postganglionic parasympathetic fiber. This connection projects from the pelvic ganglion.
female pelvic ganglion (with-axons-in postganglionic parasympathetic fiber uterovaginal nerve plexus) (with-axon-presynaptic-element-in vagina smooth muscle) neuron (implies Homo sapiens Parasympathetic Post-Ganglionic)
from pelvic ganglion to vagina smooth muscle via uterovaginal nerve plexus via postganglionic parasympathetic fiber
pelvic ganglion to the blood vessel of the cervix via uterovaginal plexus via postganglionic nerve
In female human, the parasympathetic post-ganglionic connection goes from pelvic ganglion to blood vessel of the cervix via uterovaginal nerve plexus via postganglionic parasympathetic fiber. This connection projects from the pelvic ganglion.
female pelvic ganglion (with-axons-in postganglionic parasympathetic fiber uterovaginal nerve plexus) (with-axon-presynaptic-element-in blood vessel of the cervix) neuron (implies Homo sapiens Parasympathetic Post-Ganglionic)
from pelvic ganglion to blood vessel of the cervix via uterovaginal nerve plexus via postganglionic parasympathetic fiber
pelvic ganglion to the smooth muscle of the cervix via uterovaginal plexus via postganglionic nerve
In female human, the parasympathetic post-ganglionic connection goes from pelvic ganglion to smooth muscle of the cervix via uterovaginal nerve plexus via postganglionic parasympathetic fiber. This connection projects from the pelvic ganglion.
female pelvic ganglion (with-axons-in postganglionic parasympathetic fiber uterovaginal nerve plexus) (with-axon-presynaptic-element-in smooth muscle of the cervix) neuron (implies Homo sapiens Parasympathetic Post-Ganglionic)
from pelvic ganglion to smooth muscle of the cervix via uterovaginal nerve plexus via postganglionic parasympathetic fiber
pelvic ganglion to the blood vessel of the isthmus of Fallopian tube via uterovaginal plexus via postganglionic nerve
In female human, the parasympathetic post-ganglionic connection goes from pelvic ganglion to blood vessel of the isthmus of the Fallopian tube via uterovaginal nerve plexus via postganglionic parasympathetic fiber. This connection projects from the pelvic ganglion.
female pelvic ganglion (with-axons-in postganglionic parasympathetic fiber uterovaginal nerve plexus) (with-axon-presynaptic-element-in blood vessel of the isthmus of the Fallopian tube) neuron (implies Homo sapiens Parasympathetic Post-Ganglionic)
from pelvic ganglion to blood vessel of the isthmus of the Fallopian tube via uterovaginal nerve plexus via postganglionic parasympathetic fiber
pelvic ganglion to the smooth muscle of the isthmus of Fallopian tube via uterovaginal plexus via postganglionic nerve
In female human, the parasympathetic post-ganglionic connection goes from pelvic ganglion to smooth muscle of the isthmus of the Fallopian tube via uterovaginal nerve plexus via postganglionic parasympathetic fiber. This connection projects from the pelvic ganglion.
female pelvic ganglion (with-axons-in postganglionic parasympathetic fiber uterovaginal nerve plexus) (with-axon-presynaptic-element-in smooth muscle of the isthmus of the Fallopian tube) neuron (implies Homo sapiens Parasympathetic Post-Ganglionic)
from pelvic ganglion to smooth muscle of the isthmus of the Fallopian tube via uterovaginal nerve plexus via postganglionic parasympathetic fiber
pelvic ganglion to the blood vessel of uterus via uterovaginal plexus via postganglionic nerve
In female human, the parasympathetic post-ganglionic connection goes from pelvic ganglion to blood vessel of the uterus via uterovaginal nerve plexus via postganglionic parasympathetic fiber. This connection projects from the pelvic ganglion.
female pelvic ganglion (with-axons-in postganglionic parasympathetic fiber uterovaginal nerve plexus) (with-axon-presynaptic-element-in blood vessel of the uterus) neuron (implies Homo sapiens Parasympathetic Post-Ganglionic)
from pelvic ganglion to blood vessel of the uterus via uterovaginal nerve plexus via postganglionic parasympathetic fiber
pelvic ganglion to the uterine myometrium via uterovaginal plexus via postganglionic nerve
In female human, the parasympathetic post-ganglionic connection goes from pelvic ganglion to myometrium via uterovaginal nerve plexus via postganglionic parasympathetic fiber. This connection projects from the pelvic ganglion.
female pelvic ganglion (with-axons-in postganglionic parasympathetic fiber uterovaginal nerve plexus) (with-axon-presynaptic-element-in myometrium) neuron (implies Homo sapiens Parasympathetic Post-Ganglionic)
from pelvic ganglion to myometrium via uterovaginal nerve plexus via postganglionic parasympathetic fiber
pelvic ganglion to ovary via uterovaginal plexus via postganglionic nerve
In female human, the parasympathetic post-ganglionic connection goes from pelvic ganglion to ovary via uterovaginal nerve plexus via postganglionic parasympathetic fiber. This connection projects from the pelvic ganglion.
female pelvic ganglion (with-axons-in postganglionic parasympathetic fiber uterovaginal nerve plexus) (with-axon-presynaptic-element-in ovary) neuron (implies Homo sapiens Parasympathetic Post-Ganglionic)
from pelvic ganglion to ovary via uterovaginal nerve plexus via postganglionic parasympathetic fiber
blood vessel of the isthmus of the Fallopian tube
S2-S4 dorsal root ganglia with axon sensory terminal in vagina via pelvic splanchnic nerve with axon terminal in S2-S4 spinal cord via S2-S4 dorsal roots of spinal cord
In female human, the connection goes from fourth sacral spinal ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord via Posterior root of fourth sacral nerve, Posterior root of second sacral nerve, Posterior root of third sacral nerve; from fourth sacral spinal ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to vagina via pelvic splanchnic nerve. This sensory connection projects from the fourth sacral spinal ganglion, second sacral dorsal root ganglion and third sacral dorsal root ganglion.
female fourth sacral spinal ganglion second sacral dorsal root ganglion third sacral dorsal root ganglion (with-axons-in Posterior root of fourth sacral nerve Posterior root of second sacral nerve Posterior root of third sacral nerve) (with-axon-presynaptic-element-in S2 segment of sacral spinal cord S3 segment of sacral spinal cord S4 segment of sacral spinal cord) (implies Homo sapiens sensory neuron)
from fourth sacral spinal ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord via Posterior root of fourth sacral nerve, Posterior root of second sacral nerve, Posterior root of third sacral nerve from fourth sacral spinal ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to vagina via pelvic splanchnic nerve
updated to include pelvic splanchnic nerve as axon leading to sensory terminal.\nupdated via to label sensory axon
S2-S4 dorsal root ganglia with axon sensory terminal in uterine cervix via pelvic splanchnic nerve with axon terminal in S2-S4 spinal cord via S2-S4 dorsal roots of spinal cord
In female human, the connection goes from fourth sacral spinal ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord via Posterior root of fourth sacral nerve, Posterior root of second sacral nerve, Posterior root of third sacral nerve; from fourth sacral spinal ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to uterine cervix via pelvic splanchnic nerve. This sensory connection projects from the fourth sacral spinal ganglion, second sacral dorsal root ganglion and third sacral dorsal root ganglion.
from fourth sacral spinal ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord via Posterior root of fourth sacral nerve, Posterior root of second sacral nerve, Posterior root of third sacral nerve from fourth sacral spinal ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to uterine cervix via pelvic splanchnic nerve
updated to include pelvic splanchnic nerve as axon leading to sensory terminal\nAdjusted ordering of spinal cord features in population diagram; adjusted via so that pelvic splanchnic was a separate via than the dorsal root in order to get partial ordering correct.\nwhat to do with dorsal root of spinal cord via?
T10-L2 dorsal root ganglia with axon sensory terminal in uterus via hypogastric nerve with axon terminal in T10-L2 dorsal root ganglia to T10-L2 spinal cord via T10-L2 dorsal roots of spinal cord
In female human, the connection goes from eleventh thoracic dorsal root ganglion or first lumbar dorsal root ganglion or second lumbar dorsal root ganglion or tenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord via Posterior root of eleventh thoracic nerve, Posterior root of first lumbar nerve, Posterior root of second lumbar nerve, Posterior root of tenth thoracic nerve, Posterior root of twelfth thoracic nerve; from eleventh thoracic dorsal root ganglion or first lumbar dorsal root ganglion or second lumbar dorsal root ganglion or tenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to uterus via hypogastric nerve. This sensory connection projects from the eleventh thoracic dorsal root ganglion, first lumbar dorsal root ganglion, second lumbar dorsal root ganglion, tenth thoracic dorsal root ganglion and twelfth thoracic dorsal root ganglion.
female eleventh thoracic dorsal root ganglion first lumbar dorsal root ganglion second lumbar dorsal root ganglion tenth thoracic dorsal root ganglion twelfth thoracic dorsal root ganglion (with-axons-in Posterior root of eleventh thoracic nerve Posterior root of first lumbar nerve Posterior root of second lumbar nerve Posterior root of tenth thoracic nerve Posterior root of twelfth thoracic nerve) (with-axon-presynaptic-element-in L1 segment of lumbar spinal cord L2 segment of lumbar spinal cord T10 segment of thoracic spinal cord T11 segment of thoracic spinal cord T12 segment of thoracic spinal cord) (implies Homo sapiens sensory neuron)
from eleventh thoracic dorsal root ganglion or first lumbar dorsal root ganglion or second lumbar dorsal root ganglion or tenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord via Posterior root of eleventh thoracic nerve, Posterior root of first lumbar nerve, Posterior root of second lumbar nerve, Posterior root of tenth thoracic nerve, Posterior root of twelfth thoracic nerve from eleventh thoracic dorsal root ganglion or first lumbar dorsal root ganglion or second lumbar dorsal root ganglion or tenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to uterus via hypogastric nerve
updated to include hypogastric as axon leading to sensory terminal.\nAs agreed we add the individual dorsal (posterior) roots\nAdded T11 and T12 spinal segments. Please review Ilias. also - this statement has a different structure whereby the segments and DRGs are individually specified but the dorsal roots are not. Any reconciliation needed?
Posterior root of twelfth thoracic nerve
Posterior root of eleventh thoracic nerve
T10-L2 dorsal root ganglia with axon sensory terminal in uterine cervix via hypogastric nerve with axon terminal in T10-L2 spinal cord via T10-L2 dorsal roots of spinal cord
In female human, the connection goes from eleventh thoracic dorsal root ganglion or first lumbar dorsal root ganglion or second lumbar dorsal root ganglion or tenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord via Posterior root of eleventh thoracic nerve, Posterior root of first lumbar nerve, Posterior root of second lumbar nerve, Posterior root of tenth thoracic nerve, Posterior root of twelfth thoracic nerve; from eleventh thoracic dorsal root ganglion or first lumbar dorsal root ganglion or second lumbar dorsal root ganglion or tenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to uterine cervix via hypogastric nerve. This sensory connection projects from the eleventh thoracic dorsal root ganglion, first lumbar dorsal root ganglion, second lumbar dorsal root ganglion, tenth thoracic dorsal root ganglion and twelfth thoracic dorsal root ganglion.
from eleventh thoracic dorsal root ganglion or first lumbar dorsal root ganglion or second lumbar dorsal root ganglion or tenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord via Posterior root of eleventh thoracic nerve, Posterior root of first lumbar nerve, Posterior root of second lumbar nerve, Posterior root of tenth thoracic nerve, Posterior root of twelfth thoracic nerve from eleventh thoracic dorsal root ganglion or first lumbar dorsal root ganglion or second lumbar dorsal root ganglion or tenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to uterine cervix via hypogastric nerve
Changed Axon to Axon to PNS for hypogastric nerve\nupdated to include hypogastric nerve as axon leading to sensory terminal.\nHow do we handle dorsal root of spinal cord in routing?
S2-S4 dorsal root ganglia with axon sensory terminal in clitoris via pudendal nerve with axon terminal in S2-S4 spinal cord via S2-S4 dorsal roots of spinal cord
In female human, the connection goes from fourth sacral spinal ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord via Posterior root of fourth sacral nerve, Posterior root of second sacral nerve, Posterior root of third sacral nerve; from fourth sacral spinal ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to clitoris via pudendal nerve. This sensory connection projects from the fourth sacral spinal ganglion, second sacral dorsal root ganglion and third sacral dorsal root ganglion.
from fourth sacral spinal ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord via Posterior root of fourth sacral nerve, Posterior root of second sacral nerve, Posterior root of third sacral nerve from fourth sacral spinal ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to clitoris via pudendal nerve
updated to include pudendal nerve as axon leading to sensory terminal.\nadjusted via to correct lack of partial order.\nneed to know what to do with the dorsal root of spinal cord
Branch of anterior ramus of spinal nerve
Branch of peripheral segment of spinal nerve
Posterior ramus of cervical spinal nerve
Nerve trunk, each instance of which is the tract arising from some optic chiasma, consisting of fiber segments frm some ipsilateral temporal and contralateral nasal retinas, proceeding backward, around some cerebral peduncle, and dividing into a lateral and a medial root; the roots end in some superior colliculus and lateral geniculate body, respectively.
Branch of anterior ramus of lumbar nerve
Branch of ventral ramus of lumbar spinal nerve
gray communicating ramus of thoracic nerve
Gray communicating ramus of thoracic ventral ramus
Gray ramus communicans of thoracic anterior ramus
White communicating ramus of thoracic anterior ramus
White communicating ramus of thoracic ventral ramus
White ramus communicans of thoracic anterior ramus
White communicating ramus of lumbar nerve
White ramus communicans of lumbar spinal nerve
Materielles körperliches anatomisches Wesen
intermediolateral nucleus of T5-T12 to celiac ganglion or superior mesenteric ganglion via greater or lesser splanchnic nerves
In human, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of fifth thoracic segment or Intermediolateral nucleus of ninth thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of sixth thoracic segment to celiac ganglion or superior mesenteric ganglion via greater splanchnic nerve; from Intermediolateral nucleus of eleventh thoracic segment or Intermediolateral nucleus of tenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to celiac ganglion or superior mesenteric ganglion via lesser splanchnic nerve. This connection projects from the Intermediolateral nucleus of fifth thoracic segment, Intermediolateral nucleus of sixth thoracic segment, Intermediolateral nucleus of seventh thoracic segment, Intermediolateral nucleus of eighth thoracic segment, Intermediolateral nucleus of ninth thoracic segment, Intermediolateral nucleus of tenth thoracic segment, Intermediolateral nucleus of eleventh thoracic segment and Intermediolateral nucleus of twelfth thoracic segment.
Intermediolateral nucleus of eighth thoracic segment Intermediolateral nucleus of eleventh thoracic segment Intermediolateral nucleus of fifth thoracic segment Intermediolateral nucleus of ninth thoracic segment Intermediolateral nucleus of seventh thoracic segment Intermediolateral nucleus of sixth thoracic segment Intermediolateral nucleus of tenth thoracic segment Intermediolateral nucleus of twelfth thoracic segment (with-axons-in greater splanchnic nerve lesser splanchnic nerve) (with-axon-presynaptic-element-in celiac ganglion superior mesenteric ganglion) (projecting-onto neuron type gastint 3 neuron type gastint 4) neuron (implies Homo sapiens Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of fifth thoracic segment or Intermediolateral nucleus of ninth thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of sixth thoracic segment to celiac ganglion or superior mesenteric ganglion via greater splanchnic nerve from Intermediolateral nucleus of eleventh thoracic segment or Intermediolateral nucleus of tenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to celiac ganglion or superior mesenteric ganglion via lesser splanchnic nerve
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celiac ganglion or superior mesenteric ganglion to duodenal wall via celiac periarterial nerve plexus
In human, the sympathetic post-ganglionic connection goes from celiac ganglion or superior mesenteric ganglion to Wall of duodenum via celiac periarterial nerve plexus. This connection projects from the celiac ganglion and superior mesenteric ganglion.
celiac ganglion superior mesenteric ganglion (with-axon-in celiac periarterial nerve plexus) (with-axon-presynaptic-element-in Wall of duodenum) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from celiac ganglion or superior mesenteric ganglion to Wall of duodenum via celiac periarterial nerve plexus
celiac ganglion or superior mesenteric ganglion to musculature of the jejunum or ileum or transverse colon or proximal colon via celiac nerve plexus via superior mesenteric plexus
In human, the sympathetic post-ganglionic connection goes from celiac ganglion or superior mesenteric ganglion to Muscle layer of transverse colon or muscle layer of ileum or muscle layer of jejunum or muscle layer of proximal colon via celiac nerve plexus via superior mesenteric plexus. This connection projects from the celiac ganglion and superior mesenteric ganglion.
celiac ganglion superior mesenteric ganglion (with-axons-in celiac nerve plexus superior mesenteric plexus) (with-axon-presynaptic-element-in Muscle layer of transverse colon muscle layer of ileum muscle layer of jejunum muscle layer of proximal colon) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from celiac ganglion or superior mesenteric ganglion to Muscle layer of transverse colon or muscle layer of ileum or muscle layer of jejunum or muscle layer of proximal colon via celiac nerve plexus via superior mesenteric plexus
The via was "postganglionic axons along the superior mesenteric artery" and I changed it to "superior mesenteric plexus".
Intermediolateral nucleus of fifth thoracic segment
Intermediolateral nucleus of sixth thoracic segment
Intermediolateral nucleus of seventh thoracic segment
Intermediolateral nucleus of eighth thoracic segment
Intermediolateral nucleus of ninth thoracic segment
Intermediolateral nucleus of tenth thoracic segment
Intermediolateral nucleus of eleventh thoracic segment
Intermediolateral nucleus of twelfth thoracic segment
intermediolateral columns of L1-L2 to abdominal aortic or inferior mesenteric plexus ganglia via lumbar splanchnic nerves
In human, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of first lumbar segment or Intermediolateral nucleus of second lumbar segment to inferior mesenteric ganglion or prevertebral sympathetic ganglion in abdominal aortic plexus via lumbar splanchnic nerve. This connection projects from the Intermediolateral nucleus of first lumbar segment and Intermediolateral nucleus of second lumbar segment.
Intermediolateral nucleus of first lumbar segment Intermediolateral nucleus of second lumbar segment (with-axon-in lumbar splanchnic nerve) (with-axon-presynaptic-element-in inferior mesenteric ganglion prevertebral sympathetic ganglion in abdominal aortic plexus) (projecting-onto neuron type gastint 6) neuron (implies Homo sapiens Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of first lumbar segment or Intermediolateral nucleus of second lumbar segment to inferior mesenteric ganglion or prevertebral sympathetic ganglion in abdominal aortic plexus via lumbar splanchnic nerve
prevertebral sympathetic ganglion in abdominal aortic plexus
abdominal aortic plexus prevertebral sympathetic ganglion
abdominal aortic or inferior mesenteric plexus ganglion to distal one-third of the transverse colon or descending colon or sigmoid colon or rectum or upper part of the anal canal via inferior mesenteric nerve plexus
In human, the sympathetic post-ganglionic connection goes from inferior mesenteric ganglion or prevertebral sympathetic ganglion in abdominal aortic plexus to Distal part of transverse colon or descending colon or rectum or sigmoid colon or upper part of the anal canal via inferior mesenteric nerve plexus. This connection projects from the inferior mesenteric ganglion and prevertebral sympathetic ganglion in abdominal aortic plexus.
inferior mesenteric ganglion prevertebral sympathetic ganglion in abdominal aortic plexus (with-axon-in inferior mesenteric nerve plexus) (with-axon-presynaptic-element-in Distal part of transverse colon descending colon rectum sigmoid colon upper part of the anal canal) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from inferior mesenteric ganglion or prevertebral sympathetic ganglion in abdominal aortic plexus to Distal part of transverse colon or descending colon or rectum or sigmoid colon or upper part of the anal canal via inferior mesenteric nerve plexus
The via "postganglionic fibres are distributed with branches of the inferior mesenteric artery" became "via inferior mesenteric nerve plexus".
Intermediolateral nucleus of first lumbar segment
Intermediolateral nucleus of second lumbar segment
intermediolateral nucleus of S2‒S4 to intramural ganglia of the myenteric plexus within the wall of the hindgut via pelvic splanchnic nerves via inferior hypogastric plexus
In human, the parasympathetic pre-ganglionic connection goes from Intermediolateral nucleus of fourth sacral segment or Intermediolateral nucleus of second sacral segment or Intermediolateral nucleus of third sacral segment to myenteric nerve plexus ganglion of large intestine via pelvic splanchnic nerve via inferior hypogastric nerve plexus. This connection projects from the Intermediolateral nucleus of fourth sacral segment, Intermediolateral nucleus of second sacral segment and Intermediolateral nucleus of third sacral segment.
Intermediolateral nucleus of fourth sacral segment Intermediolateral nucleus of second sacral segment Intermediolateral nucleus of third sacral segment (with-axons-in inferior hypogastric nerve plexus pelvic splanchnic nerve) (with-axon-presynaptic-element-in myenteric nerve plexus ganglion of large intestine) (projecting-onto neuron type gastint 8) neuron (implies Homo sapiens Parasympathetic Pre-Ganglionic)
from Intermediolateral nucleus of fourth sacral segment or Intermediolateral nucleus of second sacral segment or Intermediolateral nucleus of third sacral segment to myenteric nerve plexus ganglion of large intestine via pelvic splanchnic nerve via inferior hypogastric nerve plexus
I added the term "enteric ganglion" which already exists in UBERON and its synonym is intramural ganglion. The description of the population talks about hindgut innervation. Consult further if I should create subterms.
myenteric nerve plexus ganglion of large intestine
intramural ganglia of the myenteric plexus within the wall of the hindgut to descending colon or sigmoid colon or rectum or upper anal canal via postganglionic parasympathetic fiber
In human, the parasympathetic post-ganglionic connection goes from myenteric nerve plexus ganglion of large intestine to descending colon or rectum or sigmoid colon or upper part of the anal canal via postganglionic parasympathetic fiber. This connection projects from the myenteric nerve plexus ganglion of large intestine.
myenteric nerve plexus ganglion of large intestine (with-axon-in postganglionic parasympathetic fiber) (with-axon-presynaptic-element-in descending colon rectum sigmoid colon upper part of the anal canal) neuron (implies Homo sapiens Parasympathetic Post-Ganglionic)
from myenteric nerve plexus ganglion of large intestine to descending colon or rectum or sigmoid colon or upper part of the anal canal via postganglionic parasympathetic fiber
Replaced "distal large intestine" with "descending colon and sigmoid colon" as they are parts of the first.
Intermediolateral nucleus of second sacral segment
Intermediolateral nucleus of third sacral segment
Intermediolateral nucleus of fourth sacral segment
dorsal motor nucleus of the vagus or nucleus ambiguous to intramural ganglion of the myenteric plexus via vagus nerve via esophageal plexus via abdominal vagal trunk
In human, the parasympathetic pre-ganglionic connection goes from dorsal motor nucleus of vagus nerve or nucleus ambiguus to enteric ganglion via vagus nerve via Esophageal nerve plexus via abdominal branch of vagus nerve. This connection projects from the dorsal motor nucleus of vagus nerve and nucleus ambiguus.
Amb dorsal motor nucleus of vagus nerve (with-axons-in 10n Esophageal nerve plexus abdominal branch of vagus nerve) (with-axon-presynaptic-element-in enteric ganglion) (projecting-onto neuron type gastint 10) neuron (implies Homo sapiens Parasympathetic Pre-Ganglionic)
from dorsal motor nucleus of vagus nerve or nucleus ambiguus to enteric ganglion via vagus nerve via Esophageal nerve plexus via abdominal branch of vagus nerve
intramural ganglion in the myenteric plexus to small intestine or cecum or ascending colon or transverse colon via postganglionic parasympathetic fiber
In human, the parasympathetic post-ganglionic connection goes from enteric ganglion to ascending colon or caecum or small intestine or transverse colon via postganglionic parasympathetic fiber. This connection projects from the enteric ganglion.
enteric ganglion (with-axon-in postganglionic parasympathetic fiber) (with-axon-presynaptic-element-in ascending colon ceca small intestine transverse colon) neuron (implies Homo sapiens Parasympathetic Post-Ganglionic)
from enteric ganglion to ascending colon or caecum or small intestine or transverse colon via postganglionic parasympathetic fiber
dorsal motor nucleus of the vagus (vagal nucleus)
Myenteric nerve plexus ganglion of esophagus to esophageal musculature
In human, the enteric connection goes from myenteric nerve plexus ganglion of esophagus to esophagus muscle. This connection projects from the myenteric nerve plexus ganglion of esophagus.
myenteric nerve plexus ganglion of esophagus (with-axon-presynaptic-element-in esophagus muscle) neuron (implies Homo sapiens Enteric)
from myenteric nerve plexus ganglion of esophagus to esophagus muscle
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myenteric nerve plexus ganglion of esophagus
Myenteric nerve plexus ganglion of stomach to stomach musculature
In human, the enteric connection goes from myenteric nerve plexus ganglion of stomach to stomach smooth muscle. This connection projects from the myenteric nerve plexus ganglion of stomach.
myenteric nerve plexus ganglion of stomach (with-axon-presynaptic-element-in stomach smooth muscle) neuron (implies Homo sapiens Enteric)
from myenteric nerve plexus ganglion of stomach to stomach smooth muscle
myenteric nerve plexus ganglion of stomach
Myenteric nerve plexus ganglion of small intestine to small intestine musculature
In human, the enteric connection goes from myenteric nerve plexus of small intestine to small intestine smooth muscle. This connection projects from the myenteric nerve plexus of small intestine.
myenteric nerve plexus of small intestine (with-axon-presynaptic-element-in small intestine smooth muscle) neuron (implies Homo sapiens Enteric)
from myenteric nerve plexus of small intestine to small intestine smooth muscle
myenteric nerve plexus of small intestine
Myenteric nerve plexus ganglion of large intestine to large intestine musculature
In human, the enteric connection goes from myenteric nerve plexus ganglion of large intestine to muscle layer of large intestine. This connection projects from the myenteric nerve plexus ganglion of large intestine.
myenteric nerve plexus ganglion of large intestine (with-axon-presynaptic-element-in muscle layer of large intestine) neuron (implies Homo sapiens Enteric)
from myenteric nerve plexus ganglion of large intestine to muscle layer of large intestine
Myenteric nerve plexus ganglion of rectum to rectum musculature
In human, the enteric connection goes from myenteric nerve plexus ganglion of rectum to muscle layer of rectum. This connection projects from the myenteric nerve plexus ganglion of rectum.
myenteric nerve plexus ganglion of rectum (with-axon-presynaptic-element-in muscle layer of rectum) neuron (implies Homo sapiens Enteric)
from myenteric nerve plexus ganglion of rectum to muscle layer of rectum
myenteric nerve plexus ganglion of rectum
Myenteric nerve plexus ganglion of anus to anus musculature
In human, the enteric connection goes from myenteric nerve plexus ganglion of anus to muscle layer of anal canal. This connection projects from the myenteric nerve plexus ganglion of anus.
myenteric nerve plexus ganglion of anus (with-axon-presynaptic-element-in muscle layer of anal canal) neuron (implies Homo sapiens Enteric)
from myenteric nerve plexus ganglion of anus to muscle layer of anal canal
Submucosal nerve plexus ganglion of small intestine to small intestinal epithelium or myenteric nerve plexus ganglion of small intestine
In human, the enteric connection goes from submucosal nerve plexus ganglion of small intestine to Myenteric ganglion of small intestine or epithelium of small intestine. This connection projects from the submucosal nerve plexus ganglion of small intestine.
submucosal nerve plexus ganglion of small intestine (with-axon-presynaptic-element-in Myenteric ganglion of small intestine epithelium of small intestine) neuron (implies Homo sapiens Enteric)
from submucosal nerve plexus ganglion of small intestine to Myenteric ganglion of small intestine or epithelium of small intestine
submucosal nerve plexus ganglion of small intestine
Submucosal nerve plexus ganglion of large intestine to large intestinal epithelium or myenteric nerve plexus ganglion of large intestine
In human, the enteric connection goes from submucosal nerve plexus ganglion of large intestine to epithelium of large intestine or myenteric nerve plexus ganglion of large intestine. This connection projects from the submucosal nerve plexus ganglion of large intestine.
submucosal nerve plexus ganglion of large intestine (with-axon-presynaptic-element-in epithelium of large intestine myenteric nerve plexus ganglion of large intestine) neuron (implies Homo sapiens Enteric)
from submucosal nerve plexus ganglion of large intestine to epithelium of large intestine or myenteric nerve plexus ganglion of large intestine
submucosal nerve plexus ganglion of large intestine
Submucosal nerve plexus ganglion of rectum to rectal epithelium or myenteric nerve plexus ganglion of rectum
In human, the enteric connection goes from submucosal nerve plexus ganglion of rectum to epithelium of rectum or myenteric nerve plexus ganglion of rectum. This connection projects from the submucosal nerve plexus ganglion of rectum.
submucosal nerve plexus ganglion of rectum (with-axon-presynaptic-element-in epithelium of rectum myenteric nerve plexus ganglion of rectum) neuron (implies Homo sapiens Enteric)
from submucosal nerve plexus ganglion of rectum to epithelium of rectum or myenteric nerve plexus ganglion of rectum
submucosal nerve plexus ganglion of rectum
Submucosal nerve plexus ganglion of anus to anal epithelium or myenteric nerve plexus ganglion of anus
In human, the enteric connection goes from submucosal nerve plexus ganglion of anus to anal canal epithelium or myenteric nerve plexus ganglion of anus. This connection projects from the submucosal nerve plexus ganglion of anus.
submucosal nerve plexus ganglion of anus (with-axon-presynaptic-element-in anal canal epithelium myenteric nerve plexus ganglion of anus) neuron (implies Homo sapiens Enteric)
from submucosal nerve plexus ganglion of anus to anal canal epithelium or myenteric nerve plexus ganglion of anus
submucosal nerve plexus ganglion of anus
myenteric plexus ganglion to longitudinal muscle of the colon (tenia coli or inter-tenial)
In human, the enteric connection goes from myenteric ganglion to Longitudinal muscle layer of colon or taenia coli. This motor connection projects from the myenteric ganglion.
myenteric ganglion (with-axon-presynaptic-element-in Longitudinal muscle layer of colon taenia coli) (implies Homo sapiens Enteric motor neuron)
from myenteric ganglion to Longitudinal muscle layer of colon or taenia coli
I drafted the populations extracted from the portal directly in Composer so the only identification for the batch I gave were the tags "Portal study - PRIORITY" and "1st batch pops from Portal". Back then we didn't have the feature population set in place if i remember correctly. We can create a set name "1st Portal batch" and I can apply it to all of them.\nBernard suggests keeping the general term but check partonomy for teniai coli.
User Ilias Ziogas transitioned this record from ready_to_compose to compose_now\nUser Ilias Ziogas transitioned this record from open to ready_to_compose\n@ilias this is now corrected. curate away :)\n@Sue I have created the tag already but I messed up with the two DOI (first is the pub and second is the dataset).
longitudinal band of large intestine muscularis
smooth muscle longitudinal layer of colon
motor neuron phenotype, motor projecting phenotype, muscle projecting phenotype, hasForwardConnectionPhenotype some myocyte, implies
left T7-T11 dorsal root ganglion with axon sensory terminal in fundus or corpus or antrum of the stomach (myenteric ganglia, longitudinal and circular muscular layers, blood vessels) via left greater splanchnic nerve or left lesser splanchnic nerve with axon terminal in the grey horn of left T7-T11 spinal cord via left T7-T11 dorsal roots of spinal cord
Spatial extent: Dr. Zixi Cheng, the corresponding author of the study used as the source, mentioned the epicenter of labeled cells is T7-T11, but there is a spatial distribution of DRG labeled cells from T4-T12.
In rat, the connection goes from Left eighth thoracic spinal ganglion or Left eleventh thoracic spinal ganglion or Left ninth thoracic spinal ganglion or Left seventh thoracic spinal ganglion or Left tenth thoracic spinal ganglion to dorsal grey horn of left T10 or dorsal grey horn of left T11 or dorsal grey horn of left T7 or dorsal grey horn of left T8 or dorsal grey horn of left T9 via Posterior root of left eighth thoracic nerve, Posterior root of left eleventh thoracic nerve, Posterior root of left ninth thoracic nerve, Posterior root of left seventh thoracic nerve, Posterior root of left tenth thoracic nerve; from Left eighth thoracic spinal ganglion or Left eleventh thoracic spinal ganglion or Left ninth thoracic spinal ganglion or Left seventh thoracic spinal ganglion or Left tenth thoracic spinal ganglion to body of stomach or myenteric nerve plexus ganglion of stomach or pyloric antrum or stomach fundus epithelium or stomach smooth muscle circular layer or stomach smooth muscle outer longitudinal layer via Left greater splanchnic nerve, Left lesser splanchnic nerve. This sensory connection projects from the Left eighth thoracic spinal ganglion, Left tenth thoracic spinal ganglion, Left eleventh thoracic spinal ganglion, Left ninth thoracic spinal ganglion and Left seventh thoracic spinal ganglion and is found on the left side of the body.
We spoke directly with the corresponding author of the study used as the source Dr. Zixi Cheng to confirm the distillation of knowledge. He mentioned there is a spatial distribution of DRG labeled cells and that in the paper they mention the epicenter.
Left eighth thoracic spinal ganglion Left eleventh thoracic spinal ganglion Left ninth thoracic spinal ganglion Left seventh thoracic spinal ganglion Left tenth thoracic spinal ganglion (with-axons-in Posterior root of left eighth thoracic nerve Posterior root of left eleventh thoracic nerve Posterior root of left ninth thoracic nerve Posterior root of left seventh thoracic nerve Posterior root of left tenth thoracic nerve) (with-axon-presynaptic-element-in dorsal grey horn of left T10 dorsal grey horn of left T11 dorsal grey horn of left T7 dorsal grey horn of left T8 dorsal grey horn of left T9) Left (implies Rattus norvegicus sensory neuron)
from Left eighth thoracic spinal ganglion or Left eleventh thoracic spinal ganglion or Left ninth thoracic spinal ganglion or Left seventh thoracic spinal ganglion or Left tenth thoracic spinal ganglion to dorsal grey horn of left T10 or dorsal grey horn of left T11 or dorsal grey horn of left T7 or dorsal grey horn of left T8 or dorsal grey horn of left T9 via Posterior root of left eighth thoracic nerve, Posterior root of left eleventh thoracic nerve, Posterior root of left ninth thoracic nerve, Posterior root of left seventh thoracic nerve, Posterior root of left tenth thoracic nerve from Left eighth thoracic spinal ganglion or Left eleventh thoracic spinal ganglion or Left ninth thoracic spinal ganglion or Left seventh thoracic spinal ganglion or Left tenth thoracic spinal ganglion to body of stomach or myenteric nerve plexus ganglion of stomach or pyloric antrum or stomach fundus epithelium or stomach smooth muscle circular layer or stomach smooth muscle outer longitudinal layer via Left greater splanchnic nerve, Left lesser splanchnic nerve
Perhaps we should create later terms for "left T7-T11 dorsal roots of spinal cord". For now let's move on.\nAlertNote added: Spatial extent: Dr. Zixi Cheng, the corresponding author of the study used as the source, mentioned the epicenter of labeled cells is T7-T11, but there is a spatial distribution of DRG labeled cells from T4-T12.\nLaterality difference: This use case shows how the left DRGs innervate ith sensory terminals both left and right atria in the rat. The innervation of the rat atria from the right DRGs is yet to be studied.\nWe spoke directly with the corresponding author of the study used as the source Dr. Zixi Cheng to confirm the distillation of knowledge. He mentioned there is a spatial distribution of DRG labeled cells and that in the paper they mention the epicenter.\nWe could create left and right greater and lesser splanchnic nerves to keep the laterality.\nWe can add this alert note as we did with other pops: Information on the splanchnic nerve comes from ISBN13:978-1608312948.
User Ilias Ziogas transitioned this record from ready_to_compose to compose_now\nUser Ilias Ziogas transitioned this record from needs_further_review to ready_to_compose\nUser Ilias Ziogas transitioned this record from excluded to needs_further_review\nUser Ilias Ziogas transitioned this record from completed to excluded\nThe paper does not explicitly mention 2 of the entries in the population label. 1. The dorsal horn as axon terminal destination, this is assumed and should be brought to the the field expert. 2. The via to PNS is considered to be the spinal nerves based on the context of the paper as it is not mentioned explicitly. Considering that it is T7-T11 should be "lower thoracic nerves".\nThe paper describes what they saw but still they haven't investigated laterality. °However, we have yet to conclude the laterality preference of DRG injections, meaning whether the lef or right sets of DRG dominantly innervate the ventral or dorsal surfaces of the stomach, and whether they preferentially innervate certain gastric targets.° Not sure, how to treat this. I wouldn't include laterality, but the stomach is one organ, not a bilateral one.\nCurator notes https://docs.google.com/document/d/1sZnit7AMxN-SMK6RYGLmSqknJ4k7jeC1u9G_GiT1-I0/edit?tab=t.0.\nUser Ilias Ziogas transitioned this record from open to completed
We spoke directly with the corresponding author of the study used as the source Dr.Zixi Cheng to confirm the distillation of knowledge.
Posterior root of left ninth thoracic nerve
Posterior root of left eighth thoracic nerve
Posterior root of left tenth thoracic nerve
Posterior root of left seventh thoracic nerve
Posterior root of left eleventh thoracic nerve
stratum circulare (tunica muscularis)(gaster)
stratum circulare tunicae muscularis gastricae
stomach smooth muscle outer longitudinal layer
longitudinal layer of gastric muscularis
outer longitudinal muscle layer of stomach
stratum longitudinale (tunica muscularis)(gaster)
stratum longitudinale tunicae muscularis gastricae
nodose ganglion with axon sensory terminal in the circular or longitudinal muscle layer of the stomach or myenteric ganglia of the stomach via vagus nerve (via intramuscular arrays) with axon terminal in nucleus of the tractus solitarius via root of vagus nerve
Alert 1: The primary reference identifies the vagal afferent endings of this population as intramuscular arrays (IMAs). According to Powley et al., 2011 https://doi.org/10.1002/cne.22541 "The second smooth muscle ending, the intramuscular array, is found running in smooth muscle in association with interstitial cells of Cajal; although it is uncertain whether these afferents have been adequately sampled in electrophysiological analyses, they are presumed to be mechanoreceptors and have been hypothesized to serve as stretch receptors (see discussions in Phillips and Powley, 2000; Zagorodnyuk et al., 2001)." Alert 2: The dataset https://doi.org/10.26275/ih2m-pphy has been added as a reference for the axon terminals in the nucleus of solitary tract that have cell bodies residing in nodose ganglion.
In rat, the connection goes from inferior vagus X ganglion to myenteric nerve plexus ganglion of stomach or stomach smooth muscle circular layer or stomach smooth muscle outer longitudinal layer via vagus nerve; from inferior vagus X ganglion to nucleus of solitary tract via root of vagus nerve. This sensory connection projects from the inferior vagus X ganglion.
We split this population and the population "nodose ganglion with axon sensory terminal in the myenteric ganglia of the stomach via vagus nerve (via intraganglionic Laminar Endings) with axon terminal in nucleus of the tractus solitarius via vagus nerve" because based on the references we interpret that these are two different kinds of vagal afferent fibers travelling from the nodose ganglion to the stomach.
inferior vagus X ganglion (with-axon-in 10n) (with-axon-presynaptic-element-in nucleus of solitary tract) (implies Rattus norvegicus sensory neuron)
from inferior vagus X ganglion to myenteric nerve plexus ganglion of stomach or stomach smooth muscle circular layer or stomach smooth muscle outer longitudinal layer via vagus nerve from inferior vagus X ganglion to nucleus of solitary tract via root of vagus nerve
root of vagus nerve http://purl.obolibrary.org/obo/UBERON_0011213 This is Bernard's suggestion for the portion of the vagus nerve between nodose and NTS.\nI have added 2 alerts in this population. 1 for the kind of nerve endings for this vagal afferent population described in the rat stomach and I have included an extract from Dr. Powley's publication that defines what these nerve endings are. I also have not included the IMA endings as distinct anatomical entities in the modeling but I have simply included this in the label in a parenthesis so it can be retrieved by the NLI directly. 2 I added the SPARC dataset reference in the list for the axon terminals in the nucleus of solitary tract that have cell bodies residing in nodose ganglion.
User Ilias Ziogas transitioned this record from ready_to_compose to compose_now\nUser Ilias Ziogas transitioned this record from open to ready_to_compose\nCurators notes https://docs.google.com/document/d/1sZnit7AMxN-SMK6RYGLmSqknJ4k7jeC1u9G_GiT1-I0/edit?tab=t.0\nAdded the Intramuscular Arrays (IMAs) as a via because Powley mentions it explicitly as type of ending. Not sure it is right but we can discuss it.
nodose ganglion with axon sensory terminal in the myenteric ganglion of the stomach via vagus nerve (via intraganglionic Laminar Endings) with axon terminal in nucleus of the tractus solitarius via root of vagus nerve
Alert 1: The primary reference identifies the vagal afferent endings of this population as intraganglionic Laminar Endings (IGLEs). According to Powley et al., 2011 https://doi.org/10.1002/cne.22541: "Surveys of the smooth muscle wall of the gut, from the esophagus to colon (e.g., Wang and Powley, 2000) have commonly recognized two classes of vagal afferents in the tunica muscularis. One, the intraganglionic laminar ending, is associated with myenteric ganglia, is found from esophagus to colon, and appears to operate as mechanoreceptor detecting tension (Phillips and Powley, 2000; Zagorodnyuk et al., 2001)." Alert 2: The dataset https://doi.org/10.26275/ih2m-pphy has been added as a reference for the axon terminals in the nucleus of solitary tract that have cell bodies residing in nodose ganglion.
In rat, the connection goes from inferior vagus X ganglion to nucleus of solitary tract via root of vagus nerve; from inferior vagus X ganglion to myenteric nerve plexus ganglion of stomach via vagus nerve. This sensory connection projects from the inferior vagus X ganglion.
We split this population and the population "nodose ganglion with axon sensory terminal in the circular or longitudinal muscle layer of the stomach or myenteric ganglia of the stomach via vagus nerve (via intramuscular arrays) with axon terminal in nucleus of the tractus solitarius via vagus nerve" because based on the references we interpret that these are two different kinds of vagal afferent fibers travelling from the nodose ganglion to the stomach.
inferior vagus X ganglion (with-axon-in rX) (with-axon-presynaptic-element-in nucleus of solitary tract) (implies Rattus norvegicus sensory neuron)
from inferior vagus X ganglion to nucleus of solitary tract via root of vagus nerve from inferior vagus X ganglion to myenteric nerve plexus ganglion of stomach via vagus nerve
root of vagus nerve http://purl.obolibrary.org/obo/UBERON_0011213\nThis is Bernard's suggestion for the portion of the vagus nerve between nodose and NTS.
left C8-T3 dorsal root ganglion with axon sensory terminal in epicardium OR myocardium OR intrinsic cardiac ganglia of the epicardium OR adipose tissue of the epicardium via nerve plexus along the left precaval vein with axon terminal in the grey horn of left C8-T3 spinal cord via left C8-T3 dorsal roots of spinal cord
Spatial extent: Dr. Zixi Cheng, the corresponding author of the study used as the source, mentioned the epicenter of labeled cells is C8-T3, but there is a spatial distribution of DRG labeled cells. Laterality difference: This use case shows how the left DRGs innervate with sensory terminals both left and right atria in the rat. The innervation of the rat atria from the right DRGs is yet to be studied. The corresponding author confirmed a left-predominant distribution of fibers in the left atria compared to the right atria in rats. Data source note: The left precaval vein plexus appears to be a synonym: left cranial vein plexus in the rat (as per Batulevicius et al., 2003 and Chen et al., 2025).
In not specified rat, the connection goes from Left eighth cervical spinal ganglion or Left first thoracic spinal ganglion or Left second thoracic spinal ganglion or Left third thoracic spinal ganglion to dorsal grey horn of left C8 or dorsal grey horn of left T1 or dorsal grey horn of left T2 or dorsal grey horn of left T3 via Posterior root of left eighth cervical nerve, Posterior root of left first thoracic nerve, Posterior root of left second thoracic nerve, Posterior root of left third thoracic nerve; from Left eighth cervical spinal ganglion or Left first thoracic spinal ganglion or Left second thoracic spinal ganglion or Left third thoracic spinal ganglion to Atrial intrinsic cardiac ganglion or cardiac muscle of left atrium or cardiac muscle of right atrium or epicardial fat or left cardiac atrium or right cardiac atrium via nerve plexus along the left precaval vein. This bilateral sensory connection projects from the Left eighth cervical spinal ganglion, Left first thoracic spinal ganglion, Left second thoracic spinal ganglion and Left third thoracic spinal ganglion and is found on the left side of the body.
Left eighth cervical spinal ganglion Left first thoracic spinal ganglion Left second thoracic spinal ganglion Left third thoracic spinal ganglion (with-axons-in Posterior root of left eighth cervical nerve Posterior root of left first thoracic nerve Posterior root of left second thoracic nerve Posterior root of left third thoracic nerve) (with-axon-presynaptic-element-in dorsal grey horn of left C8 dorsal grey horn of left T1 dorsal grey horn of left T2 dorsal grey horn of left T3) Left (projecting bilateral) (implies Rattus norvegicus sensory neuron)
from Left eighth cervical spinal ganglion or Left first thoracic spinal ganglion or Left second thoracic spinal ganglion or Left third thoracic spinal ganglion to dorsal grey horn of left C8 or dorsal grey horn of left T1 or dorsal grey horn of left T2 or dorsal grey horn of left T3 via Posterior root of left eighth cervical nerve, Posterior root of left first thoracic nerve, Posterior root of left second thoracic nerve, Posterior root of left third thoracic nerve from Left eighth cervical spinal ganglion or Left first thoracic spinal ganglion or Left second thoracic spinal ganglion or Left third thoracic spinal ganglion to Atrial intrinsic cardiac ganglion or cardiac muscle of left atrium or cardiac muscle of right atrium or epicardial fat or left cardiac atrium or right cardiac atrium via nerve plexus along the left precaval vein
Pending proof for full extend of spacial cell distribution in the DRGs to include in the AlertNote.\nWe should come back to create specific terms for "left C8-T3 dorsal roots of spinal cord".\nThe note below is wrong.\nThe nerve plexus associated with the left precaval vein, also known as the left atrial vein or left superior pulmonary vein, is part of the broader cardiac plexus and coronary plexuses.\nWe are asking Jack Cheng about the way it travels contrlaterally\nI decided to include laterality in origin and via but not destination since there is innervation of both left and right atria (with more dense innervation in the left) for this population because the authors say that there is notable lateralization " Our findings revealed a comprehensive and precise distribution of spinal afferents from left DRGs (C8-T3) extending their projections to both the left and right atria, with a notable lateralization......In order to thoroughly explore the laterality preference and the respective contributions of each side of the DRG to heart innervation, tracer injections into the right-side DRG should be performed in the future. "\nPre-print here: https://drive.google.com/file/d/1AJh6bylwW7u5enSAi_5c5Fx7bFpwIIpw/view?usp=sharing
User Susan Tappan transitioned this record from ready_to_compose to compose_now\nUser Susan Tappan transitioned this record from needs_further_review to ready_to_compose\nUser Susan Tappan transitioned this record from open to needs_further_review\nIlias - what do you think about this format for ingesting/curating datasets & their primary publications?
nerve plexus along the left precaval vein
Posterior root of left second thoracic nerve
Posterior root of left third thoracic nerve
Posterior root of left first thoracic nerve
Posterior root of left eighth cervical nerve
cardiac muscle tissue of heart right atrium
cardiac muscle tissue of right atrium of heart
textus muscularis of myocardium of right atrium
textus muscularis of myocardium of right atrium of heart
textus muscularis of myocardium of right cardiac atrium
cardiac left atrium cardiac muscle tissue
textus muscularis of myocardium of cardiac left atrium
textus muscularis of myocardium of heart left atrium
textus muscularis of myocardium of left atrium
textus muscularis of myocardium of left atrium of heart
textus muscularis of myocardium of left cardiac atrium
AMPA-type glutamate-gated cationic channel
cytoarchitectural fields of hippocampal formation
inferior cervical ganglion - middle cervical ganglion interganglionic segment of the sympathetic chain
T1 - inferior cervical ganglion interganglionic segment of the sympathetic chain
middle cervical ganglion - superior cervical ganglion interganglionic segment of the sympathetic chain
External branch of inferior laryngeal nerve
recurrent laryngeal nerve from vagus nerve
vagus X nerve recurrent laryngeal branch
Internal branch of inferior laryngeal nerve
nucleus phrenicus columnae anterioris medullae spinalis
phrenic nucleus of anterior column of spinal cord
lamina VII of gray matter of spinal cord
white communicating ramus of first thoracic spinal nerve
gray communicating ramus of twelfth thoracic nerve
gray communicating ramus of sixth lumbar nerve
gray communicating ramus of second thoracic nerve
gray communicating ramus of third thoracic nerve
superior lateral brachial cutaneous nerve
inferior lateral brachial cutaneous nerve
Lamina propria mucosae of descending colon
lamina propria of colonic mucous membrane
Circular muscle layer of descending colon
Longitudinal muscle layer of descending colon
T12 - T13 interganglionic segment of the sympathetic chain
ganglion of sympathetic part of autonomic division of nervous system
sympathetic part of autonomic division of nervous system ganglion
T13 - L1 interganglionic segment of the sympathetic chain
L6 - S1 interganglionic segment of the sympathetic chain
T1 - T2 interganglionic segment of the sympathetic chain
T2 - T3 interganglionic segment of the sympathetic chain
T3 - T4 interganglionic segment of the sympathetic chain
T4 - T5 interganglionic segment of the sympathetic chain
T5 - T6 interganglionic segment of the sympathetic chain
gray communicating ramus of the fifth thoracic nerve
gray communicating ramus of the fifth intercostal nerve
Posterior root of seventh thoracic nerve
ventral root of the third thoracic spinal cord segment
Ventral nerve root of thoracic spinal cord
anterior nerve root of thoracic spinal cord
gray communicating ramus of eleventh thoracic nerve
gray communicating ramus of the eleventh intercostal nerve
Posterior root of right twelfth thoracic nerve
ventral root of the first lumbar spinal cord segment
Ventral nerve root of lumbar spinal cord
anterior nerve root of lumbar spinal cord
Posterior root of right sixth thoracic nerve
gray communicating ramus of ninth thoracic nerve
gray communicating ramus of the ninth intercostal nerve
gray communicating ramus of second lumbar nerve
gray communicating ramus of first lumbar nerve
gray communicating ramus of third lumbar nerve
ventral root of the eighth cervical spinal cord segment
anterior root of eighth cervical spinal cord segment
Ventral nerve root of cervical spinal cord
anterior nerve root of cervical spinal cord
Thoracodorsal nerve component of C7 nerve
Posterior root of right eleventh thoracic nerve
Posterior root of left first lumbar nerve
Posterior root of right eighth thoracic nerve
Posterior root of right ninth thoracic nerve
gray communicating ramus of the first thoracic nerve
gray communicating ramus of the first intercostal nerve
ventral root of the third lumbar spinal cord segment
gray communicating ramus of the third thoracic nerve
gray communicating ramus of the third intercostal nerve
ventral root of the first thoracic spinal cord segment
Posterior root of right seventh thoracic nerve
gray communicating ramus of sixth thoracic nerve
gray communicating ramus of the sixth intercostal nerve
ventral root of the eighth thoracic spinal cord segment
Lateral pectoral nerve component of C6 nerve
gray communicating ramus of fourth lumbar nerve
ventral root of the tenth thoracic spinal cord segment
ventral root of the second lumbar spinal cord segment
gray communicating ramus of seventh thoracic nerve
gray communicating ramus of the seventh intercostal nerve
gray communicating ramus of the fourth thoracic nerve
gray communicating ramus of the fourth intercostal nerve
Long thoracic nerve component of C5 nerve
Posterior root of seventh cervical nerve
Lateral pectoral nerve component of C5 nerve
Pharyngeal branch of glossopharyngeal nerve
ventral root of the second thoracic spinal cord segment
ventral root of the seventh thoracic spinal cord segment
ventral root of the fourth lumbar spinal cord segment
ventral root of the fifth thoracic spinal cord segment
Posterior root of left twelfth thoracic nerve
Gray communicating ramus of cervicothoracic ganglion to first thoracic spinal nerve
ventral root of the eleventh thoracic spinal cord segment
anterior root of eleventh thoracic nerve
Lateral pectoral nerve component of C7 nerve
ventral root of the sixth thoracic spinal cord segment
gray communicating ramus of the second thoracic nerve
gray communicating ramus of the second intercostal nerve
ventral root of the fifth lumbar spinal cord segment
Posterior ramus of fourth cervical nerve
gray communicating ramus of eighth thoracic nerve
gray communicating ramus of the eighth intercostal nerve
ventral root of the ninth thoracic spinal cord segment
ventral root of the twelveth thoracic spinal cord segment
anterior root of twelveth thoracic nerve
Posterior root of left second lumbar nerve
gray communicating ramus of tenth thoracic nerve
gray communicating ramus of the tenth intercostal nerve
ventral root of the fourth thoracic spinal cord segment
ventral root of the first sacral spinal cord segment
Ventral nerve root of sacral spinal cord
anterior nerve root of sacral spinal cord
Posterior root of right tenth thoracic nerve
ventral root of the thirteenth thoracic spinal cord segment
Anterior root of thirteenth thoracic nerve
white communicating ramus of second thoracic spinal nerve
white communicating ramus of third thoracic spinal nerve
white communicating ramus of fourth thoracic spinal nerve
white communicating ramus of fifth thoracic spinal nerve
white communicating ramus of sixth thoracic spinal nerve
white communicating ramus of seventh thoracic spinal nerve
white communicating ramus of eighth thoracic spinal nerve
white communicating ramus of eleventh thoracic spinal nerve
white communicating ramus of twelfth thoracic spinal nerve
white communicating ramus of thirteenth thoracic spinal nerve
white communicating ramus of first lumbar spinal nerve
white communicating ramus of second lumbar spinal nerve
gray communicating ramus of thirteenth thoracic nerve
gray communicating ramus of the thirteenth intercostal nerve
gray communicating ramus of first sacral nerve
white communicating ramus of third lumbar spinal nerve
White communicating ramus of fourth lumbar anterior ramus
External branch of superior laryngeal nerve
superior laryngeal branch of inferior vagal ganglion
Internal branch of superior laryngeal nerve
terminal bronchiole parasympathetic ganglia
ventral root of the sixth lumbar spinal cord segment
fibers provided by http://purl.obolibrary.org/obo/UBERON_0001989
substantia grisea centralis mesencephali
Arteriole in circular muscle layer of descending colon
Arteriole in lamina propria of mucosa of descending colon
Arteriole in longitudinal muscle layer of descending colon
Arteriole in myenteric nerve plexus of descending colon
Arteriole in submucous nerve plexus of descending colon
Myenteric nerve plexus of descending colon
Submucosal nerve plexus of descending colon
myenteric nerve plexus of lower esophagus
Arteriole in connective tissue of bladder neck
Arteriole in connective tissue of bladder dome
Nerve plexus in adventitia of splenic artery
nerve plexus in adventitia of inferior pancreaticoduodenal artery
arteriae pancreaticoduodenales inferiores
nerve plexus in adventitia of hepatic artery
Intermediolateral nucleus of second thoracic segment
intermediolateral nucleus of spinal cord
nucleus intermediolateralis medullae spinalis
Intermediolateral nucleus of third thoracic segment
Intermediolateral nucleus of fourth thoracic segment
Communicating branch with zygomatic nerve
Sympathetic root of pterygopalatine ganglion
Nerve fiber from submandibular ganglion to submandibular gland
Nerve fiber from submandibular ganglion to mouth mucosa
Nerve fiber from submandibular ganglion to sublingual gland
inferior hypogastric nerve plexus ganglion
parasympathetic nucleus of sixth lumbar segment
Intermediolateral nucleus of thirteenth thoracic segment
Dorsal gray commissure of first lumbar segment
commissura grisea posterior medullae spinalis
posterior grey commissure of spinal cord
Dorsal gray commissure of second lumbar segment
articular branch of lateral pectoral nerve
middle limb segment of proximal segment of free upper limb
zeugopod of proximal segment of free upper limb
Ligamentum collaterale carpi ulnare (Articulatio radiocarpalis)
Ulnar collateral ligament of wrist joint
anterolateral part of thorax muscle organ
muscle organ of anterior thoracic region
muscle organ of anterolateral part of thorax
Pars profunda (Musculus sphincter ani externus)
superficial part of external anal sphincter
Pars superficialis (Musculus sphincter ani externus)
subcutaneous part of external anal sphincter
Pars subcutanea (Musculus sphincter ani externus)
Ilio-inguinal nerve Nervus ilio-inguinalis
Ramus femoralis (Nervus genitofemoralis)
Ramus genitalis (Nervus genitofemoralis)
periarterial neural plexus of the common hepatic artery
Proper Palmar Digital Branches of Median Nerve
Posterior root of right thirteenth thoracic nerve
Posterior root of left thirteenth thoracic nerve
Right thirteenth thoracic spinal ganglion
Left thirteenth thoracic spinal ganglion
Intermediolateral nucleus of first thoracic segment
Autonomic nervous system population phenotype
used to account for populations that are part of distinct autonomic nervous system subdivisions
projects in the anterior direction of the housing structure
we don’t always have target location information, sometimes the best we get is ‘the axon leaves the section’, equivalent to RemoteAxon
When used directly indicates the presence or absense of an apical dendrite. Rather than subclassing directly, could be combined with general dendrite phenotypes to allow specificity.
A Phenotype is a binary property of a biological entity. Phenotypes are derived from measurements made on the subject of interest. While Phenotype is not currently placed within the BFO hierarchy, if we were to place it, it would fall under BFO:0000016 -> disposition, since these phenotypes are contingent on the experimental conditions under which measurements were made and are NOT qualities. For consideration: in theory this would mean that disjointness does not make sense, even for things that would seem to be obviously disjoint such as Accommodating and Non-Accommodating. However, this information can still be captured on a subject by subject basis by asserting that for this particular entity, coocurrance of phenotypes is not possible. This still leaves the question of whether the class of biological entities that correspond to the bag of phenotypes is implicitly bounded/limited only to the extrinsic and unspecified experimental conditions, some of which are not and cannot be included in a bag of phenotypes. The way to deal with this when we want to include 2 'same time' disjoint phenotypes, is to use a logical phenotype to wrap them with an auxiliary variable that we think accounts for the difference.
this is the 'general' morphological phenotype that might be made up of soma/axon/dendrite
we really should be able to deal with spines in a convenient way
this class is circumspect, and may actually be NarrowTuftedPyramidalPhenotype
figure out how to regularize these since I have used ilxtr:parvalbumin elsewhere, probably ilxtr:phenotype/thing will be best
Early bifurcating thick tufted pyramidal phenotype
Early bifurcating thick tufted pyramidal
Late bifurcating thick tufted pyramidal phenotype
Early bifurcating tufted pyramidal phenotype
we are not modelling dendrite phenotypes directly at the moment so we cant break about EB/LB
Late bifurcating tufted pyramidal phenotype
note that there is also an 'untufted slender' classification so we probably do need to break these out
local projections only? (define local) equivalent to LocalAxonOnly, is this an axon phenotype or an axon location phenotype?
model this as NegPhenotype(ilxtr:RemoteAxon)? This really feels like we are overcomplicating things… all we should need to know is that in projects to its own brain region… or better to a specific cell population that has a known location
Aspiny can be modelled as (not ilxtr:SpinyPhenotype), this will be needed for Allen's scheme
I get the feeling that this is actually a synonym for slender, ma2015sup uses 'thin' but that has nasty collsions with 'thick' for short naming (sigh)
soma located in NTS to unknown CNS location
In dog, domestic pig and human, the connection goes from nucleus of solitary tract to central nervous system. This spinal cord ascending projection phenotype connection projects from the nucleus of solitary tract. It is described in UCLA model of the heart model.
nucleus of solitary tract (with-axon-presynaptic-element-in CNS) neuron (implies Canis lupus familiaris Domestic Pig Homo sapiens (projecting-to Spinal cord ascending projection))
from nucleus of solitary tract to central nervous system
Moved Jeff Adell from provenance to expert consultant; added zenodo DOI; removed github\nQUESTION FOR BERNARD: This population projecting to insula is missing in the SVG diagram. Can you confirm the destination and type please? ttl file indicates spinal cord ascending phenotype.\nThis population was missing the insula. It doesn't appear in the ApiNATOMY-to-NPO spreadsheet either.\nworking to correct this now. the information is wholly missing in this population.
Spinal cord ascending projection phenotype
projects in the anterior direction of the spinal cord
inferior cervical ganglion to inferior cervical ganglion
In dog, domestic pig and human, the not specified connection goes from inferior cervical ganglion to inferior cervical ganglion. This intrinsic connection projects from the inferior cervical ganglion. It is described in UCLA model of the heart model.
inferior cervical ganglion (with-axon-presynaptic-element-in inferior cervical ganglion) (projecting-onto ilxtr:neuron-type-aacar-6) (implies Canis lupus familiaris Domestic Pig Homo sapiens intrinsic neuron)
from inferior cervical ganglion to inferior cervical ganglion
added zenodo; added jeff ardell as expert, removed github & ardell from provenance\nconfirmed that this depiction matches fahim's drawing https://sckan-partial-order.netlify.app/\nremoved non-resolving ILX uri from provenance\nImpacted by Composer requirement that phenotype is specified.
Superior or middle or inferior cervical ganglia or T1-T6 to right or left heart atria (endocardium and myocardium) OR right and left heart ventricles (endocardium and myocardium) via thoracic sympathetic trunk via vagosympathetic trunk via epicardial fat via epicardium via respective right or left atrial myocardium OR respective right or left ventricular myocardium; From superior, middle and inferior cervical ganglia, T1-T6 to heart epicardium via thoracic sympathetic trunk via vagosympathetic trunk via epicardial fat via epicardium; From superior, middle and inferior cervical ganglia, T1-T6 to atrial and ventricular intrinsic cardiac ganglia via thoracic sympathetic trunk via vagosympathetic trunk via epicardial fat;From mediastinal ganglion to right and left heart atria (endocardium and myocardium) OR right and left heart ventricles (endocardium and myocardium) via ansa subclavia via vagosympathetic trunk via epicardial fat via epicardium via respective right or left atrial myocardium OR respective right or left ventricular myocardium; From mediastinal ganglion to heart epicardium via ansa subclavia via vagosympathetic trunk via epicardial fat via epicardium; From mediastinal ganglion to atrial and ventricular intrinsic cardiac ganglia via ansa subclavia via vagosympathetic trunk via epicardial fat
In dog, domestic pig and human, the sympathetic post-ganglionic connection goes from Third thoracic ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) or heart right ventricle (endocardium) or heart right ventricle (myocardium) or left cardiac atrium (endocardium) or left cardiac atrium (myocardium) or right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via gray communicating ramus of the third thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) via heart left ventricle (myocardium), heart right ventricle (myocardium), left cardiac atrium (myocardium), right cardiac atrium (myocardium); from inferior cervical ganglion or middle cervical ganglion or superior cervical ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) or heart right ventricle (endocardium) or heart right ventricle (myocardium) or left cardiac atrium (endocardium) or left cardiac atrium (myocardium) or right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) via heart left ventricle (myocardium), heart right ventricle (myocardium), left cardiac atrium (myocardium), right cardiac atrium (myocardium); from Fourth thoracic ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) or heart right ventricle (endocardium) or heart right ventricle (myocardium) or left cardiac atrium (endocardium) or left cardiac atrium (myocardium) or right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via gray communicating ramus of the fourth thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) via heart left ventricle (myocardium), heart right ventricle (myocardium), left cardiac atrium (myocardium), right cardiac atrium (myocardium); from Fourth thoracic ganglion to heart (epicardium) via gray communicating ramus of the fourth thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium); from mediastinal ganglion to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via ansa subclavia via vagosympathetic trunk via heart (epicardial fat); from Third thoracic ganglion to heart (epicardium) via gray communicating ramus of the third thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium); from mediastinal ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) or heart right ventricle (endocardium) or heart right ventricle (myocardium) or left cardiac atrium (endocardium) or left cardiac atrium (myocardium) or right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via ansa subclavia via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) via heart left ventricle (myocardium), heart right ventricle (myocardium), left cardiac atrium (myocardium), right cardiac atrium (myocardium); from T1 sympathetic ganglion to heart left ventricle (endocardium) or heart right ventricle (endocardium) or left cardiac atrium (endocardium) or left cardiac atrium (myocardium) or right cardiac atrium (endocardium) via gray communicating ramus of the first thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) via left cardiac atrium (myocardium); from T1 sympathetic ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) or heart right ventricle (endocardium) or heart right ventricle (myocardium) or left cardiac atrium (endocardium) or right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via gray communicating ramus of the first thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) via heart left ventricle (myocardium), heart right ventricle (myocardium), right cardiac atrium (myocardium); from Second thoracic ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) or heart right ventricle (endocardium) or left cardiac atrium (endocardium) or right cardiac atrium (endocardium) via gray communicating ramus of the second thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) via heart left ventricle (myocardium); from Sixth thoracic ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) or heart right ventricle (endocardium) or heart right ventricle (myocardium) or left cardiac atrium (endocardium) or left cardiac atrium (myocardium) or right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via gray communicating ramus of sixth thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) via heart left ventricle (myocardium), heart right ventricle (myocardium), left cardiac atrium (myocardium), right cardiac atrium (myocardium); from Fifth thoracic ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) or heart right ventricle (endocardium) or heart right ventricle (myocardium) or left cardiac atrium (endocardium) or left cardiac atrium (myocardium) or right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via gray communicating ramus of the fifth thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) via heart left ventricle (myocardium), heart right ventricle (myocardium), left cardiac atrium (myocardium), right cardiac atrium (myocardium); from Second thoracic ganglion to heart left ventricle (endocardium) or heart right ventricle (endocardium) or heart right ventricle (myocardium) or left cardiac atrium (endocardium) or left cardiac atrium (myocardium) or right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via gray communicating ramus of the second thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) via heart right ventricle (myocardium), left cardiac atrium (myocardium), right cardiac atrium (myocardium); from Fifth thoracic ganglion to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via gray communicating ramus of the fifth thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat); from inferior cervical ganglion or middle cervical ganglion or superior cervical ganglion to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat); from T1 sympathetic ganglion to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via gray communicating ramus of the first thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat); from Second thoracic ganglion to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via gray communicating ramus of the second thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat); from Fourth thoracic ganglion to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via gray communicating ramus of the fourth thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat); from Sixth thoracic ganglion to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via gray communicating ramus of sixth thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat); from Second thoracic ganglion to heart (epicardium) via gray communicating ramus of the second thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium); from inferior cervical ganglion or middle cervical ganglion or superior cervical ganglion to heart (epicardium) via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium); from Sixth thoracic ganglion to heart (epicardium) via gray communicating ramus of sixth thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium); from Third thoracic ganglion to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via gray communicating ramus of the third thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat); from Fifth thoracic ganglion to heart (epicardium) via gray communicating ramus of the fifth thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium); from mediastinal ganglion to heart (epicardium) via ansa subclavia via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium); from T1 sympathetic ganglion to heart (epicardium) via gray communicating ramus of the first thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium). This connection projects from the Fifth thoracic ganglion, Fourth thoracic ganglion, inferior cervical ganglion, mediastinal ganglion, middle cervical ganglion, Second thoracic ganglion, Sixth thoracic ganglion, T1 sympathetic ganglion, Third thoracic ganglion and superior cervical ganglion. It is described in UCLA model of the heart model.
T1 sympathetic chain ganglion T2 sympathetic chain ganglion T3 sympathetic chain ganglion T4 sympathetic chain ganglion T5 sympathetic chain ganglion T6 sympathetic chain ganglion inferior cervical ganglion mediastinal ganglion middle cervical ganglion superior cervical ganglion (with-axons-in (intersection-of-part-of heart epicardial fat) ansa subclavia gray communicating ramus of sixth thoracic nerve gray communicating ramus of the fifth thoracic nerve gray communicating ramus of the first thoracic nerve gray communicating ramus of the fourth thoracic nerve gray communicating ramus of the second thoracic nerve gray communicating ramus of the third thoracic nerve thoracic sympathetic nerve trunk vagosympthetic trunk) (with-axon-presynaptic-element-in (intersection-of-part-of heart epicardium) (intersection-of-part-of heart left ventricle endocardium) (intersection-of-part-of heart left ventricle myocardium) (intersection-of-part-of heart right ventricle endocardium) (intersection-of-part-of heart right ventricle myocardium) (intersection-of-part-of left cardiac atrium endocardium) (intersection-of-part-of left cardiac atrium myocardium) (intersection-of-part-of right cardiac atrium endocardium) (intersection-of-part-of right cardiac atrium myocardium) Atrial intrinsic cardiac ganglion ventricular intrinsic cardiac ganglion) (projecting-onto ilxtr:neuron-type-aacar-10a ilxtr:neuron-type-aacar-10v) neuron (implies Canis lupus familiaris Domestic Pig Homo sapiens Sympathetic Post-Ganglionic)
from Third thoracic ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) or heart right ventricle (endocardium) or heart right ventricle (myocardium) or left cardiac atrium (endocardium) or left cardiac atrium (myocardium) or right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via gray communicating ramus of the third thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) via heart left ventricle (myocardium), heart right ventricle (myocardium), left cardiac atrium (myocardium), right cardiac atrium (myocardium) from inferior cervical ganglion or middle cervical ganglion or superior cervical ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) or heart right ventricle (endocardium) or heart right ventricle (myocardium) or left cardiac atrium (endocardium) or left cardiac atrium (myocardium) or right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) via heart left ventricle (myocardium), heart right ventricle (myocardium), left cardiac atrium (myocardium), right cardiac atrium (myocardium) from Fourth thoracic ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) or heart right ventricle (endocardium) or heart right ventricle (myocardium) or left cardiac atrium (endocardium) or left cardiac atrium (myocardium) or right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via gray communicating ramus of the fourth thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) via heart left ventricle (myocardium), heart right ventricle (myocardium), left cardiac atrium (myocardium), right cardiac atrium (myocardium) from Fourth thoracic ganglion to heart (epicardium) via gray communicating ramus of the fourth thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) from mediastinal ganglion to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via ansa subclavia via vagosympathetic trunk via heart (epicardial fat) from Third thoracic ganglion to heart (epicardium) via gray communicating ramus of the third thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) from mediastinal ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) or heart right ventricle (endocardium) or heart right ventricle (myocardium) or left cardiac atrium (endocardium) or left cardiac atrium (myocardium) or right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via ansa subclavia via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) via heart left ventricle (myocardium), heart right ventricle (myocardium), left cardiac atrium (myocardium), right cardiac atrium (myocardium) from T1 sympathetic ganglion to heart left ventricle (endocardium) or heart right ventricle (endocardium) or left cardiac atrium (endocardium) or left cardiac atrium (myocardium) or right cardiac atrium (endocardium) via gray communicating ramus of the first thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) via left cardiac atrium (myocardium) from T1 sympathetic ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) or heart right ventricle (endocardium) or heart right ventricle (myocardium) or left cardiac atrium (endocardium) or right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via gray communicating ramus of the first thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) via heart left ventricle (myocardium), heart right ventricle (myocardium), right cardiac atrium (myocardium) from Second thoracic ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) or heart right ventricle (endocardium) or left cardiac atrium (endocardium) or right cardiac atrium (endocardium) via gray communicating ramus of the second thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) via heart left ventricle (myocardium) from Sixth thoracic ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) or heart right ventricle (endocardium) or heart right ventricle (myocardium) or left cardiac atrium (endocardium) or left cardiac atrium (myocardium) or right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via gray communicating ramus of sixth thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) via heart left ventricle (myocardium), heart right ventricle (myocardium), left cardiac atrium (myocardium), right cardiac atrium (myocardium) from Fifth thoracic ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) or heart right ventricle (endocardium) or heart right ventricle (myocardium) or left cardiac atrium (endocardium) or left cardiac atrium (myocardium) or right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via gray communicating ramus of the fifth thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) via heart left ventricle (myocardium), heart right ventricle (myocardium), left cardiac atrium (myocardium), right cardiac atrium (myocardium) from Second thoracic ganglion to heart left ventricle (endocardium) or heart right ventricle (endocardium) or heart right ventricle (myocardium) or left cardiac atrium (endocardium) or left cardiac atrium (myocardium) or right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via gray communicating ramus of the second thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) via heart right ventricle (myocardium), left cardiac atrium (myocardium), right cardiac atrium (myocardium) from Fifth thoracic ganglion to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via gray communicating ramus of the fifth thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) from inferior cervical ganglion or middle cervical ganglion or superior cervical ganglion to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) from T1 sympathetic ganglion to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via gray communicating ramus of the first thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) from Second thoracic ganglion to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via gray communicating ramus of the second thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) from Fourth thoracic ganglion to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via gray communicating ramus of the fourth thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) from Sixth thoracic ganglion to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via gray communicating ramus of sixth thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) from Second thoracic ganglion to heart (epicardium) via gray communicating ramus of the second thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) from inferior cervical ganglion or middle cervical ganglion or superior cervical ganglion to heart (epicardium) via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) from Sixth thoracic ganglion to heart (epicardium) via gray communicating ramus of sixth thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) from Third thoracic ganglion to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via gray communicating ramus of the third thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) from Fifth thoracic ganglion to heart (epicardium) via gray communicating ramus of the fifth thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) from mediastinal ganglion to heart (epicardium) via ansa subclavia via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium) from T1 sympathetic ganglion to heart (epicardium) via gray communicating ramus of the first thoracic nerve via thoracic sympathetic nerve trunk via vagosympathetic trunk via heart (epicardial fat) via heart (epicardium)
I am not sure if the axon going to ansa subclavia is vagosympathetic trunk. From the diagram it doesn't seem so.\nThis population has co-located via and destination. Should visit when we know how we want to model it.\nThis statement looks correct according to ApiNATOMY diagram. Should be able to transition to NPO approved.\nadded zenodo; added jeff ardell as expert, removed github\nremoved unresolving ILX URI from provenance\nHi Sue. I agree this is a crazy complex population :)\nBernard confirmed that the cervical ganglia DO NOT have gray communicating rami so we should keep it as it is.\n@sue@rockmaplescience.com I believe in this one we should add gray communicating rami for the cervical sympathetic ganglia too. I think are not shown in the diagram for simplicity. We should ask Bernard. Thus I do not approve it.\nInvestigating invalid relationships for forward connections. Seems like there's some circular issues?
middle cervical ganglion to middle cervical ganglion
In dog, domestic pig and human, the connection goes from middle cervical ganglion to middle cervical ganglion. This intrinsic connection projects from the middle cervical ganglion. It is described in UCLA model of the heart model.
middle cervical ganglion (with-axon-presynaptic-element-in middle cervical ganglion) (projecting-onto ilxtr:neuron-type-aacar-6) (implies Canis lupus familiaris Domestic Pig Homo sapiens intrinsic neuron)
from middle cervical ganglion to middle cervical ganglion
added zenodo; added jeff ardell as expert, removed github\nthis population is correct as per https://sckan-partial-order.netlify.app/\nremoved non-resolving ILX uri from provenance\nupdated model name\nImpacted by the requirement to include a phenotype selection. currently set to not-specified.\nIngested on 2/19, will be updating information to match the latest aacar model
dorsal motor nucleus of vagus nerve or nucleus ambiguus to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via medulla oblongata via vagus nerve via vagosympathetic trunk via epicardial fat
In dog, domestic pig and human, the parasympathetic pre-ganglionic connection goes from dorsal motor nucleus of vagus nerve or nucleus ambiguus to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via medulla oblongata via vagus nerve via vagosympathetic trunk via heart (epicardial fat). This connection projects from the dorsal motor nucleus of vagus nerve and nucleus ambiguus. It is described in UCLA model of the heart model.
Amb dorsal motor nucleus of vagus nerve (with-axons-in (intersection-of-part-of heart epicardial fat) 10n bulb vagosympthetic trunk) (with-axon-presynaptic-element-in Atrial intrinsic cardiac ganglion ventricular intrinsic cardiac ganglion) (projecting-onto ilxtr:neuron-type-aacar-10a ilxtr:neuron-type-aacar-10v ilxtr:neuron-type-aacar-7a ilxtr:neuron-type-aacar-7v) neuron (implies Canis lupus familiaris Domestic Pig Homo sapiens Parasympathetic Pre-Ganglionic)
from dorsal motor nucleus of vagus nerve or nucleus ambiguus to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via medulla oblongata via vagus nerve via vagosympathetic trunk via heart (epicardial fat)
added zenodo; added jeff ardell as expert, removed github\nreturned region(layer) pair for the epicardial fat to keep consistent with ApiNATOMY\nremoved non-resolving ILX uri from provenance\nupdated to include vagosympathetic trunk and epicardial fat to match the diagram.\nNeeds vago-sympathetic trunk added to anatomical entity
Atrial intrinsic cardiac ganglion to heart left and right atria (endocardium or myocardium) via epicardial fat via epicardium via respective right or left atrial myocardium; from atrial intrinsic cardiac ganglion to epicardium via heart epicardial fat via heart epicardium
In dog, domestic pig and human, the parasympathetic post-ganglionic connection goes from Atrial intrinsic cardiac ganglion to right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via heart (epicardial fat) via heart (epicardium) via right cardiac atrium (myocardium); from Atrial intrinsic cardiac ganglion to left cardiac atrium (endocardium) or left cardiac atrium (myocardium) via heart (epicardial fat) via heart (epicardium) via left cardiac atrium (myocardium); from Atrial intrinsic cardiac ganglion to heart (epicardium) via heart (epicardial fat) via heart (epicardium). This connection projects from the Atrial intrinsic cardiac ganglion. It is described in UCLA model of the heart model.
Atrial intrinsic cardiac ganglion (with-axon-in (intersection-of-part-of heart epicardial fat)) (with-axon-presynaptic-element-in (intersection-of-part-of heart epicardium) (intersection-of-part-of left cardiac atrium endocardium) (intersection-of-part-of left cardiac atrium myocardium) (intersection-of-part-of right cardiac atrium endocardium) (intersection-of-part-of right cardiac atrium myocardium)) neuron (implies Canis lupus familiaris Domestic Pig Homo sapiens Parasympathetic Post-Ganglionic)
from Atrial intrinsic cardiac ganglion to right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via heart (epicardial fat) via heart (epicardium) via right cardiac atrium (myocardium) from Atrial intrinsic cardiac ganglion to left cardiac atrium (endocardium) or left cardiac atrium (myocardium) via heart (epicardial fat) via heart (epicardium) via left cardiac atrium (myocardium) from Atrial intrinsic cardiac ganglion to heart (epicardium) via heart (epicardial fat) via heart (epicardium)
added zenodo; added jeff ardell as expert, removed github\nremoved non-resolving ILX uri from provenance
ventricular intrinsic cardiac ganglion to heart left and right ventricles (endocardium or myocardium) via epicardial fat via epicardium via respective right or left ventricle myocardium; from ventricular intrinsic cardiac ganglion to epicardium via heart epicardial fat via heart epicardium
In dog, domestic pig and human, the parasympathetic post-ganglionic connection goes from ventricular intrinsic cardiac ganglion to heart right ventricle (endocardium) or heart right ventricle (myocardium) via heart (epicardial fat) via heart (epicardium) via heart right ventricle (myocardium); from ventricular intrinsic cardiac ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) via heart (epicardial fat) via heart (epicardium) via heart left ventricle (myocardium); from ventricular intrinsic cardiac ganglion to heart (epicardium) via heart (epicardial fat) via heart (epicardium). This connection projects from the ventricular intrinsic cardiac ganglion. It is described in UCLA model of the heart model.
ventricular intrinsic cardiac ganglion (with-axon-in (intersection-of-part-of heart epicardial fat)) (with-axon-presynaptic-element-in (intersection-of-part-of heart epicardium) (intersection-of-part-of heart left ventricle endocardium) (intersection-of-part-of heart left ventricle myocardium) (intersection-of-part-of heart right ventricle endocardium) (intersection-of-part-of heart right ventricle myocardium)) neuron (implies Canis lupus familiaris Domestic Pig Homo sapiens Parasympathetic Post-Ganglionic)
from ventricular intrinsic cardiac ganglion to heart right ventricle (endocardium) or heart right ventricle (myocardium) via heart (epicardial fat) via heart (epicardium) via heart right ventricle (myocardium) from ventricular intrinsic cardiac ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) via heart (epicardial fat) via heart (epicardium) via heart left ventricle (myocardium) from ventricular intrinsic cardiac ganglion to heart (epicardium) via heart (epicardial fat) via heart (epicardium)
this population has colocated axon and axon terminals as part of partial order (layers). do we need to revisit?\nadded zenodo; added jeff ardell as expert, removed github\nremoved non-resolving ILX uri from provenance
atrial intrinsic cardiac ganglion to atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion
In dog, domestic pig and human, the connection goes from Atrial intrinsic cardiac ganglion to Atrial intrinsic cardiac ganglion; from Atrial intrinsic cardiac ganglion to ventricular intrinsic cardiac ganglion via cardiac interganglionic nerve. This intrinsic connection projects from the Atrial intrinsic cardiac ganglion. It is described in UCLA model of the heart model.
Atrial intrinsic cardiac ganglion (with-axon-in cardiac interganglionic nerve) (with-axon-presynaptic-element-in Atrial intrinsic cardiac ganglion ventricular intrinsic cardiac ganglion) (projecting-onto ilxtr:neuron-type-aacar-10v ilxtr:neuron-type-aacar-7a ilxtr:neuron-type-aacar-8a) (implies Canis lupus familiaris Domestic Pig Homo sapiens intrinsic neuron)
from Atrial intrinsic cardiac ganglion to Atrial intrinsic cardiac ganglion from Atrial intrinsic cardiac ganglion to ventricular intrinsic cardiac ganglion via cardiac interganglionic nerve
added zenodo; added jeff ardell as expert, removed github and ardell from provenance\ncreated missing ILX term for http://uri.interlex.org/base/ilx_0796679 (cardiac ingterganglionic nerve). confirmed it now matches the diagram in fahim's tool https://sckan-partial-order.netlify.app/\nremoved ILX URI from provenance\nupdated model to include projection to ventricular intrinsic cardiac ganglion; and forward connection to 10v
User System User transitioned this record from open to compose_now
ventricular intrinsic cardiac ganglion to atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion
In dog, domestic pig and human, the connection goes from ventricular intrinsic cardiac ganglion to Atrial intrinsic cardiac ganglion via cardiac interganglionic nerve; from ventricular intrinsic cardiac ganglion to ventricular intrinsic cardiac ganglion. This intrinsic connection projects from the ventricular intrinsic cardiac ganglion. It is described in UCLA model of the heart model.
ventricular intrinsic cardiac ganglion (with-axon-in cardiac interganglionic nerve) (with-axon-presynaptic-element-in Atrial intrinsic cardiac ganglion ventricular intrinsic cardiac ganglion) (projecting-onto ilxtr:neuron-type-aacar-10a ilxtr:neuron-type-aacar-7v ilxtr:neuron-type-aacar-8v) (implies Canis lupus familiaris Domestic Pig Homo sapiens intrinsic neuron)
from ventricular intrinsic cardiac ganglion to Atrial intrinsic cardiac ganglion via cardiac interganglionic nerve from ventricular intrinsic cardiac ganglion to ventricular intrinsic cardiac ganglion
Added Zenodo DOI; removed GitHub link, moved Ardell to Expert from Provenance\nadded cardiac interganglionic nerve to ILX and to path. now matches diagram in fahim's tool https://sckan-partial-order.netlify.app/\nremoved non-resolving ILX uri from provenance\nUpdated to include projection to atrial intrinsic cardiac ganglion. Becuase the diagram included ?? for interganglionic nerve, i didn't look for that term as a via.\nBERNARD: should we add the interganglionic nerve as an anatomical entity?
layer VII of C8 - T6 spinal segments to superior, middle, and inferior cervical ganglia and T1-T6 sympathetic ganglia via C8-T6 ventral roots via T1-T6 white communicating rami; to mediastinal ganglia via C8-T6 ventral roots via T1-T6 white communicating rami via vagosympathetic trunk via ansa subclavia; to atrial and ventricular intracardiac ganglia via C8-T6 ventral roots via T1-T6 white communicating rami via vagosympathetic trunk via epicardial fat
Need to deal with the complex partial order.
(intersection-of-part-of C8 segment of cervical spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T1 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T2 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T3 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T4 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T5 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T6 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (with-axons-in (intersection-of-part-of heart epicardial fat) (intersection-of-part-of white matter of spinal cord C8 segment of cervical spinal cord) (intersection-of-part-of white matter of spinal cord T1 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T2 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T3 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T4 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T5 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T6 segment of thoracic spinal cord) T1 - T2 interganglionic segment of the sympathetic chain T1 - inferior cervical ganglion interganglionic segment of the sympathetic chain T2 - T3 interganglionic segment of the sympathetic chain T3 - T4 interganglionic segment of the sympathetic chain T4 - T5 interganglionic segment of the sympathetic chain T5 - T6 interganglionic segment of the sympathetic chain ansa subclavia inferior cervical ganglion - middle cervical ganglion interganglionic segment of the sympathetic chain middle cervical ganglion - superior cervical ganglion interganglionic segment of the sympathetic chain vagosympthetic trunk ventral root of the eighth cervical spinal cord segment ventral root of the fifth thoracic spinal cord segment ventral root of the first thoracic spinal cord segment ventral root of the fourth thoracic spinal cord segment ventral root of the second thoracic spinal cord segment ventral root of the sixth thoracic spinal cord segment ventral root of the third thoracic spinal cord segment white communicating ramus of fifth thoracic spinal nerve white communicating ramus of first thoracic spinal nerve white communicating ramus of fourth thoracic spinal nerve white communicating ramus of second thoracic spinal nerve white communicating ramus of sixth thoracic spinal nerve white communicating ramus of third thoracic spinal nerve) (with-axon-presynaptic-element-in Atrial intrinsic cardiac ganglion T1 sympathetic chain ganglion T2 sympathetic chain ganglion T3 sympathetic chain ganglion T4 sympathetic chain ganglion T5 sympathetic chain ganglion T6 sympathetic chain ganglion inferior cervical ganglion mediastinal ganglion middle cervical ganglion superior cervical ganglion ventricular intrinsic cardiac ganglion) (projecting-onto ilxtr:neuron-type-aacar-6 ilxtr:neuron-type-aacar-8a ilxtr:neuron-type-aacar-8v) neuron (implies Canis lupus familiaris Domestic Pig Homo sapiens Sympathetic Pre-Ganglionic)
from T2 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to mediastinal ganglion via T2 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the second thoracic spinal cord segment via white communicating ramus of second thoracic spinal nerve via Second thoracic ganglion via ansa subclavia from T1 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to mediastinal ganglion via T1 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the first thoracic spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - T2 interganglionic segment of the sympathetic chain via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via ansa subclavia from T2 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Second thoracic ganglion via T2 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the second thoracic spinal cord segment via white communicating ramus of second thoracic spinal nerve via Second thoracic ganglion from T1 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via T1 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the first thoracic spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - T2 interganglionic segment of the sympathetic chain via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion via vagosympathetic trunk via heart (epicardial fat) from T3 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via T3 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the third thoracic spinal cord segment via white communicating ramus of third thoracic spinal nerve via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion via T4 - T5 interganglionic segment of the sympathetic chain via Fifth thoracic ganglion via T5 - T6 interganglionic segment of the sympathetic chain via Sixth thoracic ganglion via vagosympathetic trunk via heart (epicardial fat) from T1 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to middle cervical ganglion via T1 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the first thoracic spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - inferior cervical ganglion interganglionic segment of the sympathetic chain via inferior cervical ganglion via inferior cervical ganglion - middle cervical ganglion interganglionic segment of the sympathetic chain via middle cervical ganglion from T2 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to mediastinal ganglion via T2 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the second thoracic spinal cord segment via white communicating ramus of second thoracic spinal nerve via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion via ansa subclavia from T2 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Fifth thoracic ganglion via T2 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the second thoracic spinal cord segment via white communicating ramus of second thoracic spinal nerve via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion via T4 - T5 interganglionic segment of the sympathetic chain via Fifth thoracic ganglion from T3 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Sixth thoracic ganglion via T3 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the third thoracic spinal cord segment via white communicating ramus of third thoracic spinal nerve via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion via T4 - T5 interganglionic segment of the sympathetic chain via Fifth thoracic ganglion via T5 - T6 interganglionic segment of the sympathetic chain via Sixth thoracic ganglion from C8 segment of cervical spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via C8 segment of cervical spinal cord (white matter of spinal cord) via ventral root of the eighth cervical spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via vagosympathetic trunk via heart (epicardial fat) from T6 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via T6 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the sixth thoracic spinal cord segment via white communicating ramus of sixth thoracic spinal nerve via Sixth thoracic ganglion via vagosympathetic trunk via heart (epicardial fat) from T4 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via T4 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the fourth thoracic spinal cord segment via white communicating ramus of fourth thoracic spinal nerve via Fourth thoracic ganglion via T4 - T5 interganglionic segment of the sympathetic chain via Fifth thoracic ganglion via T5 - T6 interganglionic segment of the sympathetic chain via Sixth thoracic ganglion via vagosympathetic trunk via heart (epicardial fat) from C8 segment of cervical spinal cord (lamina VII of gray matter of spinal cord) to T1 sympathetic ganglion via C8 segment of cervical spinal cord (white matter of spinal cord) via ventral root of the eighth cervical spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion from T1 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via T1 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the first thoracic spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - T2 interganglionic segment of the sympathetic chain via Second thoracic ganglion via vagosympathetic trunk via heart (epicardial fat) from T5 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via T5 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the fifth thoracic spinal cord segment via white communicating ramus of fifth thoracic spinal nerve via Fifth thoracic ganglion via vagosympathetic trunk via heart (epicardial fat) from C8 segment of cervical spinal cord (lamina VII of gray matter of spinal cord) to Sixth thoracic ganglion via C8 segment of cervical spinal cord (white matter of spinal cord) via ventral root of the eighth cervical spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - T2 interganglionic segment of the sympathetic chain via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion via T4 - T5 interganglionic segment of the sympathetic chain via Fifth thoracic ganglion via T5 - T6 interganglionic segment of the sympathetic chain via Sixth thoracic ganglion from C8 segment of cervical spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via C8 segment of cervical spinal cord (white matter of spinal cord) via ventral root of the eighth cervical spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - T2 interganglionic segment of the sympathetic chain via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion via vagosympathetic trunk via heart (epicardial fat) from T2 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Third thoracic ganglion via T2 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the second thoracic spinal cord segment via white communicating ramus of second thoracic spinal nerve via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion from T4 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to mediastinal ganglion via T4 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the fourth thoracic spinal cord segment via white communicating ramus of fourth thoracic spinal nerve via Fourth thoracic ganglion via T4 - T5 interganglionic segment of the sympathetic chain via Fifth thoracic ganglion via T5 - T6 interganglionic segment of the sympathetic chain via Sixth thoracic ganglion via ansa subclavia from T5 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to mediastinal ganglion via T5 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the fifth thoracic spinal cord segment via white communicating ramus of fifth thoracic spinal nerve via Fifth thoracic ganglion via T5 - T6 interganglionic segment of the sympathetic chain via Sixth thoracic ganglion via ansa subclavia from T1 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Third thoracic ganglion via T1 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the first thoracic spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - T2 interganglionic segment of the sympathetic chain via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion from C8 segment of cervical spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via C8 segment of cervical spinal cord (white matter of spinal cord) via ventral root of the eighth cervical spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - T2 interganglionic segment of the sympathetic chain via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion via T4 - T5 interganglionic segment of the sympathetic chain via Fifth thoracic ganglion via T5 - T6 interganglionic segment of the sympathetic chain via Sixth thoracic ganglion via vagosympathetic trunk via heart (epicardial fat) from T1 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to inferior cervical ganglion via T1 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the first thoracic spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - inferior cervical ganglion interganglionic segment of the sympathetic chain via inferior cervical ganglion from T2 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Sixth thoracic ganglion via T2 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the second thoracic spinal cord segment via white communicating ramus of second thoracic spinal nerve via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion via T4 - T5 interganglionic segment of the sympathetic chain via Fifth thoracic ganglion via T5 - T6 interganglionic segment of the sympathetic chain via Sixth thoracic ganglion from T5 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Fifth thoracic ganglion via T5 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the fifth thoracic spinal cord segment via white communicating ramus of fifth thoracic spinal nerve via Fifth thoracic ganglion from T3 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via T3 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the third thoracic spinal cord segment via white communicating ramus of third thoracic spinal nerve via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion via vagosympathetic trunk via heart (epicardial fat) from T4 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Fifth thoracic ganglion via T4 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the fourth thoracic spinal cord segment via white communicating ramus of fourth thoracic spinal nerve via Fourth thoracic ganglion via T4 - T5 interganglionic segment of the sympathetic chain via Fifth thoracic ganglion from C8 segment of cervical spinal cord (lamina VII of gray matter of spinal cord) to mediastinal ganglion via C8 segment of cervical spinal cord (white matter of spinal cord) via ventral root of the eighth cervical spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - T2 interganglionic segment of the sympathetic chain via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via ansa subclavia from T3 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to mediastinal ganglion via T3 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the third thoracic spinal cord segment via white communicating ramus of third thoracic spinal nerve via Third thoracic ganglion via ansa subclavia from T1 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to superior cervical ganglion via T1 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the first thoracic spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - inferior cervical ganglion interganglionic segment of the sympathetic chain via inferior cervical ganglion via inferior cervical ganglion - middle cervical ganglion interganglionic segment of the sympathetic chain via middle cervical ganglion via middle cervical ganglion - superior cervical ganglion interganglionic segment of the sympathetic chain from T1 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to mediastinal ganglion via T1 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the first thoracic spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - T2 interganglionic segment of the sympathetic chain via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion via T4 - T5 interganglionic segment of the sympathetic chain via Fifth thoracic ganglion via ansa subclavia from T6 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Sixth thoracic ganglion via T6 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the sixth thoracic spinal cord segment via white communicating ramus of sixth thoracic spinal nerve via Sixth thoracic ganglion from T2 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to mediastinal ganglion via T2 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the second thoracic spinal cord segment via white communicating ramus of second thoracic spinal nerve via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion via T4 - T5 interganglionic segment of the sympathetic chain via Fifth thoracic ganglion via T5 - T6 interganglionic segment of the sympathetic chain via Sixth thoracic ganglion via ansa subclavia from T1 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Sixth thoracic ganglion via T1 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the first thoracic spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - T2 interganglionic segment of the sympathetic chain via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion via T4 - T5 interganglionic segment of the sympathetic chain via Fifth thoracic ganglion via T5 - T6 interganglionic segment of the sympathetic chain via Sixth thoracic ganglion from T2 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via T2 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the second thoracic spinal cord segment via white communicating ramus of second thoracic spinal nerve via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via vagosympathetic trunk via heart (epicardial fat) from T3 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Fourth thoracic ganglion via T3 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the third thoracic spinal cord segment via white communicating ramus of third thoracic spinal nerve via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion from T5 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via T5 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the fifth thoracic spinal cord segment via white communicating ramus of fifth thoracic spinal nerve via Fifth thoracic ganglion via T5 - T6 interganglionic segment of the sympathetic chain via Sixth thoracic ganglion via vagosympathetic trunk via heart (epicardial fat) from T4 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Fourth thoracic ganglion via T4 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the fourth thoracic spinal cord segment via white communicating ramus of fourth thoracic spinal nerve via Fourth thoracic ganglion from T2 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via T2 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the second thoracic spinal cord segment via white communicating ramus of second thoracic spinal nerve via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion via T4 - T5 interganglionic segment of the sympathetic chain via Fifth thoracic ganglion via T5 - T6 interganglionic segment of the sympathetic chain via Sixth thoracic ganglion via vagosympathetic trunk via heart (epicardial fat) from T1 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via T1 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the first thoracic spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - T2 interganglionic segment of the sympathetic chain via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via vagosympathetic trunk via heart (epicardial fat) from T2 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via T2 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the second thoracic spinal cord segment via white communicating ramus of second thoracic spinal nerve via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion via vagosympathetic trunk via heart (epicardial fat) from C8 segment of cervical spinal cord (lamina VII of gray matter of spinal cord) to Third thoracic ganglion via C8 segment of cervical spinal cord (white matter of spinal cord) via ventral root of the eighth cervical spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - T2 interganglionic segment of the sympathetic chain via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion from C8 segment of cervical spinal cord (lamina VII of gray matter of spinal cord) to mediastinal ganglion via C8 segment of cervical spinal cord (white matter of spinal cord) via ventral root of the eighth cervical spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via ansa subclavia from T2 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via T2 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the second thoracic spinal cord segment via white communicating ramus of second thoracic spinal nerve via Second thoracic ganglion via vagosympathetic trunk via heart (epicardial fat) from T2 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Fourth thoracic ganglion via T2 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the second thoracic spinal cord segment via white communicating ramus of second thoracic spinal nerve via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion from C8 segment of cervical spinal cord (lamina VII of gray matter of spinal cord) to Fourth thoracic ganglion via C8 segment of cervical spinal cord (white matter of spinal cord) via ventral root of the eighth cervical spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - T2 interganglionic segment of the sympathetic chain via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion from T6 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to mediastinal ganglion via T6 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the sixth thoracic spinal cord segment via white communicating ramus of sixth thoracic spinal nerve via Sixth thoracic ganglion via ansa subclavia from T1 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to mediastinal ganglion via T1 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the first thoracic spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - T2 interganglionic segment of the sympathetic chain via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion via ansa subclavia from T3 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via T3 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the third thoracic spinal cord segment via white communicating ramus of third thoracic spinal nerve via Third thoracic ganglion via vagosympathetic trunk via heart (epicardial fat) from C8 segment of cervical spinal cord (lamina VII of gray matter of spinal cord) to middle cervical ganglion via C8 segment of cervical spinal cord (white matter of spinal cord) via ventral root of the eighth cervical spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - inferior cervical ganglion interganglionic segment of the sympathetic chain via inferior cervical ganglion via inferior cervical ganglion - middle cervical ganglion interganglionic segment of the sympathetic chain via middle cervical ganglion from T1 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via T1 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the first thoracic spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - T2 interganglionic segment of the sympathetic chain via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion via T4 - T5 interganglionic segment of the sympathetic chain via Fifth thoracic ganglion via vagosympathetic trunk via heart (epicardial fat) from C8 segment of cervical spinal cord (lamina VII of gray matter of spinal cord) to superior cervical ganglion via C8 segment of cervical spinal cord (white matter of spinal cord) via ventral root of the eighth cervical spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - inferior cervical ganglion interganglionic segment of the sympathetic chain via inferior cervical ganglion via inferior cervical ganglion - middle cervical ganglion interganglionic segment of the sympathetic chain via middle cervical ganglion via middle cervical ganglion - superior cervical ganglion interganglionic segment of the sympathetic chain from T3 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via T3 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the third thoracic spinal cord segment via white communicating ramus of third thoracic spinal nerve via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion via T4 - T5 interganglionic segment of the sympathetic chain via Fifth thoracic ganglion via vagosympathetic trunk via heart (epicardial fat) from C8 segment of cervical spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via C8 segment of cervical spinal cord (white matter of spinal cord) via ventral root of the eighth cervical spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - T2 interganglionic segment of the sympathetic chain via Second thoracic ganglion via vagosympathetic trunk via heart (epicardial fat) from C8 segment of cervical spinal cord (lamina VII of gray matter of spinal cord) to mediastinal ganglion via C8 segment of cervical spinal cord (white matter of spinal cord) via ventral root of the eighth cervical spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - T2 interganglionic segment of the sympathetic chain via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion via T4 - T5 interganglionic segment of the sympathetic chain via Fifth thoracic ganglion via T5 - T6 interganglionic segment of the sympathetic chain via Sixth thoracic ganglion via ansa subclavia from T1 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via T1 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the first thoracic spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via vagosympathetic trunk via heart (epicardial fat) from C8 segment of cervical spinal cord (lamina VII of gray matter of spinal cord) to Atrial intrinsic cardiac ganglion or ventricular intrinsic cardiac ganglion via C8 segment of cervical spinal cord (white matter of spinal cord) via ventral root of the eighth cervical spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - T2 interganglionic segment of the sympathetic chain via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion via T4 - T5 interganglionic segment of the sympathetic chain via Fifth thoracic ganglion via vagosympathetic trunk via heart (epicardial fat) from T4 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to mediastinal ganglion via T4 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the fourth thoracic spinal cord segment via white communicating ramus of fourth thoracic spinal nerve via Fourth thoracic ganglion via ansa subclavia from T1 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Fifth thoracic ganglion via T1 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the first thoracic spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - T2 interganglionic segment of the sympathetic chain via Second thoracic ganglion via T2 - T3 interganglionic segment of the sympathetic chain via Third thoracic ganglion via T3 - T4 interganglionic segment of the sympathetic chain via Fourth thoracic ganglion via T4 - T5 interganglionic segment of the sympathetic chain via Fifth thoracic ganglion from T3 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Third thoracic ganglion via T3 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the third thoracic spinal cord segment via white communicating ramus of third thoracic spinal nerve via Third thoracic ganglion from T4 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to Sixth thoracic ganglion via T4 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the fourth thoracic spinal cord segment via
updated the population diagram.\nwhat happened to this population? all the entities are lost!!\nI would model it from the middle-superior cervical ganglion interganglionic segment\nI've been able to get the diagram to nearly 100% - question: should we have the axon terminal for the superior cervical ganglion come from the superior cervical ganglion? or from the middle cervical ganglion superior cervical ganglion interganglionic segment?\nThis still has a few bits of wonkiness, but a review without unlocking the diagram would be super helpful!
Atrial intrinsic cardiac ganglion to right and left cardiac atrium (endocardium or myocardium) via respective right or left cardiac atrial myocardium; from Atrial intrinsic cardiac ganglion to epicardium via epicardial fat
In dog, domestic pig and human, the sympathetic post-ganglionic connection goes from Atrial intrinsic cardiac ganglion to right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via heart (epicardial fat) via heart (epicardium) via right cardiac atrium (myocardium); from Atrial intrinsic cardiac ganglion to left cardiac atrium (endocardium) or left cardiac atrium (myocardium) via heart (epicardial fat) via heart (epicardium) via left cardiac atrium (myocardium); from Atrial intrinsic cardiac ganglion to heart (epicardium) via heart (epicardial fat) via heart (epicardium). This connection projects from the Atrial intrinsic cardiac ganglion. It is described in UCLA model of the heart model.
Atrial intrinsic cardiac ganglion (with-axon-in (intersection-of-part-of heart epicardial fat)) (with-axon-presynaptic-element-in (intersection-of-part-of heart epicardium) (intersection-of-part-of left cardiac atrium endocardium) (intersection-of-part-of left cardiac atrium myocardium) (intersection-of-part-of right cardiac atrium endocardium) (intersection-of-part-of right cardiac atrium myocardium)) neuron (implies Canis lupus familiaris Domestic Pig Homo sapiens Sympathetic Post-Ganglionic)
added zenodo; added jeff ardell as expert, removed github\nconfirmed this population matched axioms in Fahim's diagram: https://sckan-partial-order.netlify.app/\nremoved non-resolving ILX uri from provenance\nThis one had all the destinations as "afferent terminals" and it is sympathetic postganglionic so I changed to axon terminals.\nall questions resolved, ready for review.\nseems like we could model this as epicardial fat (atrial ICG); should we do that instead of the region(layer) that's specified?\nConfirmation: Should we have fibers (vias) through epicardium to Muscle to Endothelium? Or does the note in the diagram refer to pops 11, AND 9a, 8a, 6a and 6?
ventricular intrinsic cardiac ganglion to right and left cardiac ventricle (endocardium or myocardium) via epicardial fat via epicardium via respective right or left ventriclular myocardium; from ventricular intrinsic cardiac ganglion to epicardium via epicardial fat
In dog, domestic pig and human, the sympathetic post-ganglionic connection goes from ventricular intrinsic cardiac ganglion to heart right ventricle (endocardium) or heart right ventricle (myocardium) via heart (epicardial fat) via heart (epicardium) via heart right ventricle (myocardium); from ventricular intrinsic cardiac ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) via heart (epicardial fat) via heart (epicardium) via heart left ventricle (myocardium); from ventricular intrinsic cardiac ganglion to heart (epicardium) via heart (epicardial fat) via heart (epicardium). This connection projects from the ventricular intrinsic cardiac ganglion. It is described in UCLA model of the heart model.
ventricular intrinsic cardiac ganglion (with-axon-in (intersection-of-part-of heart epicardial fat)) (with-axon-presynaptic-element-in (intersection-of-part-of heart epicardium) (intersection-of-part-of heart left ventricle endocardium) (intersection-of-part-of heart left ventricle myocardium) (intersection-of-part-of heart right ventricle endocardium) (intersection-of-part-of heart right ventricle myocardium)) neuron (implies Canis lupus familiaris Domestic Pig Homo sapiens Sympathetic Post-Ganglionic)
added zenodo; added jeff ardell as expert, removed github\nconfirmed it has the axioms present in Fahim's tool: https://sckan-partial-order.netlify.app/\nremoved non-resolving ILX uri from provenance\nConfirm: modeling to be updated according to what is decided for path for 8a
nerve trunk of sympathetic nervous system of thorax
nerve trunk of sympathetic part of autonomic division of nervous system of thorax
sympathetic nervous system nerve trunk of thorax
thorax nerve trunk of sympathetic nervous system
thorax nerve trunk of sympathetic part of autonomic division of nervous system
thorax sympathetic nervous system nerve trunk
Atrial intrinsic cardiac ganglion with axon sensory terminals in right cardiac atrium (endothelium or myocardium) or left cardiac atrium (endothelium or myocardium) or epicardium via epicardial fat via heart epicardium with axon terminals in atrial intrinsic cardiac ganglion
In dog, domestic pig and human, the connection goes from Atrial intrinsic cardiac ganglion to right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via heart (epicardial fat) via heart (epicardium) via right cardiac atrium (myocardium); from Atrial intrinsic cardiac ganglion to Atrial intrinsic cardiac ganglion; from Atrial intrinsic cardiac ganglion to left cardiac atrium (endocardium) or left cardiac atrium (myocardium) via heart (epicardial fat) via heart (epicardium) via left cardiac atrium (myocardium); from Atrial intrinsic cardiac ganglion to heart (epicardium) via heart (epicardial fat) via heart (epicardium). This sensory connection projects from the Atrial intrinsic cardiac ganglion. It is described in UCLA model of the heart model.
Atrial intrinsic cardiac ganglion (with-axon-presynaptic-element-in Atrial intrinsic cardiac ganglion) (projecting-onto ilxtr:neuron-type-aacar-10a) (implies Canis lupus familiaris Domestic Pig Homo sapiens sensory neuron)
from Atrial intrinsic cardiac ganglion to right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via heart (epicardial fat) via heart (epicardium) via right cardiac atrium (myocardium) from Atrial intrinsic cardiac ganglion to Atrial intrinsic cardiac ganglion from Atrial intrinsic cardiac ganglion to left cardiac atrium (endocardium) or left cardiac atrium (myocardium) via heart (epicardial fat) via heart (epicardium) via left cardiac atrium (myocardium) from Atrial intrinsic cardiac ganglion to heart (epicardium) via heart (epicardial fat) via heart (epicardium)
This population has colocated axon and axon terminals.\nadded zenodo; added jeff ardell as expert, removed github\nConfirmed it matches the axioms as presented in fahim's tool https://sckan-partial-order.netlify.app/\nFixed A B via C\nremoved unresolving ILX URI from provenance
ventricular intrinsic cardiac ganglion with axon sensory terminals in right ventricle (endothelium or myocardium) or left ventricle (endothelium or myocardium) or epicardium via epicardial fat via heart epicardium with axon terminals in ventricular intrinsic cardiac ganglion
In dog, domestic pig and human, the connection goes from ventricular intrinsic cardiac ganglion to heart right ventricle (endocardium) or heart right ventricle (myocardium) via heart (epicardial fat) via heart (epicardium) via heart right ventricle (myocardium); from ventricular intrinsic cardiac ganglion to ventricular intrinsic cardiac ganglion; from ventricular intrinsic cardiac ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) via heart (epicardial fat) via heart (epicardium) via heart left ventricle (myocardium); from ventricular intrinsic cardiac ganglion to heart (epicardium) via heart (epicardial fat) via heart (epicardium). This sensory connection projects from the ventricular intrinsic cardiac ganglion. It is described in UCLA model of the heart model.
ventricular intrinsic cardiac ganglion (with-axon-presynaptic-element-in ventricular intrinsic cardiac ganglion) (projecting-onto ilxtr:neuron-type-aacar-10v) (implies Canis lupus familiaris Domestic Pig Homo sapiens sensory neuron)
from ventricular intrinsic cardiac ganglion to heart right ventricle (endocardium) or heart right ventricle (myocardium) via heart (epicardial fat) via heart (epicardium) via heart right ventricle (myocardium) from ventricular intrinsic cardiac ganglion to ventricular intrinsic cardiac ganglion from ventricular intrinsic cardiac ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) via heart (epicardial fat) via heart (epicardium) via heart left ventricle (myocardium) from ventricular intrinsic cardiac ganglion to heart (epicardium) via heart (epicardial fat) via heart (epicardium)
added zenodo; added jeff ardell as expert, removed github\nConfirmed it matches the axioms present in the diagram in Fahim's tool: https://sckan-partial-order.netlify.app/\nFixed A to B via C\nremoved non-resolving ILX uri from provenance\nDiscussed in Lab meeting today, and have collectively decided to represent regions 2x if they're both a via and a destination (as is done here) to enable the proofing/partial orders to be explicit.
nodose ganglion with axon sensory terminal to aorta tunica adventitia or pulmonary artery tunica adventitia or epicardium or left ventricle (endothelium or myocardium) or left cardiac atrium (endothelium or myocardium) or right cardiac atrium (endothelium or myocardium) via vagus nerve via epicardium and axon terminal in nucelus of solitary tract via medulla oblongata
In dog, domestic pig and human, the connection goes from inferior vagus X ganglion to heart right ventricle (endocardium) or heart right ventricle (myocardium) via vagus nerve via vagosympathetic trunk via heart (epicardium) via heart right ventricle (myocardium); from inferior vagus X ganglion to left cardiac atrium (endocardium) or left cardiac atrium (myocardium) via vagus nerve via vagosympathetic trunk via heart (epicardium) via left cardiac atrium (myocardium); from inferior vagus X ganglion to nucleus of solitary tract via medulla oblongata; from inferior vagus X ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) via vagus nerve via vagosympathetic trunk via heart (epicardium) via heart left ventricle (myocardium); from inferior vagus X ganglion to ascending aorta (aorta tunica adventitia) or heart (epicardium) or heart left ventricle (myocardium) or heart right ventricle (myocardium) or left cardiac atrium (myocardium) or pulmonary artery (tunica adventitia of artery) or right cardiac atrium (myocardium) via vagus nerve via vagosympathetic trunk via heart (epicardium); from inferior vagus X ganglion to right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via vagus nerve via vagosympathetic trunk via heart (epicardium) via right cardiac atrium (myocardium). This sensory connection projects from the inferior vagus X ganglion. It is described in UCLA model of the heart model.
changed region/layer pair from aorta (aorta tunica adventiticia) to ascending aorta (aorta tunica adventiticia) to present the more granular detail.
inferior vagus X ganglion (with-axon-in bulb) (with-axon-presynaptic-element-in nucleus of solitary tract) (projecting-onto ilxtr:neuron-type-aacar-1) (implies Canis lupus familiaris Domestic Pig Homo sapiens sensory neuron)
from inferior vagus X ganglion to heart right ventricle (endocardium) or heart right ventricle (myocardium) via vagus nerve via vagosympathetic trunk via heart (epicardium) via heart right ventricle (myocardium) from inferior vagus X ganglion to left cardiac atrium (endocardium) or left cardiac atrium (myocardium) via vagus nerve via vagosympathetic trunk via heart (epicardium) via left cardiac atrium (myocardium) from inferior vagus X ganglion to nucleus of solitary tract via medulla oblongata from inferior vagus X ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) via vagus nerve via vagosympathetic trunk via heart (epicardium) via heart left ventricle (myocardium) from inferior vagus X ganglion to ascending aorta (aorta tunica adventitia) or heart (epicardium) or heart left ventricle (myocardium) or heart right ventricle (myocardium) or left cardiac atrium (myocardium) or pulmonary artery (tunica adventitia of artery) or right cardiac atrium (myocardium) via vagus nerve via vagosympathetic trunk via heart (epicardium) from inferior vagus X ganglion to right cardiac atrium (endocardium) or right cardiac atrium (myocardium) via vagus nerve via vagosympathetic trunk via heart (epicardium) via right cardiac atrium (myocardium)
This population has colocated axon and axon terminals as part of the partial order (traversal through layers). need to revisit?\nThis population cannot be NPO approved because it's forward connection, aacar-1 (Statement 121) is missing it's population set name and cannot be exported.\nAdded Zenodo DOI, moved Ardell from provenance to expert; removed github link.\nFrom tom " I'd go with ascending aorta UBERON:0001496 \n \n \n \n \n \n4:52 PM \nsince it it more granular, matches the partial order, and is consistent with aorta \n4:54 PM \ni know it says AORTA in the svg diagram but if we provided a more granular identifier then we should use it \n4:55 PM \nespecially given that the aorta is such a large structure and that we want the part that is closer to the heart given the scope of the model. Ok, will return to that. Should we keep the more granular (aortic tunica aventicia) as the layer? Or revert to the more general tunica acentiticia of artery? answer: tgillesp \n i would keep it more granular\ndo we want to keep this region/layer pair? (aorta (aorta tunica adventiticia))\nUpdated the path to match the diagram in Fahim's tool: https://sckan-partial-order.netlify.app/ with the following exceptions: 1. there is no vago-sympathetic trunk in the svg diagram (https://raw.githubusercontent.com/open-physiology/apinatomy-models/refs/heads/master/models/ard-arm-cardiac/docs/ard-arm-cardiac.svg) 2. changed aorta (aorta tunica adventiticia) to aorta (tunica aventiticia of artery), 3. there is no ascending aorta indicated in the svg diagram or ApiNATOMY to NPO sheet. so left it as aorta.\n@ilias - this is ready for your review.\nSomething seems to be missing here https://docs.google.com/spreadsheets/d/16k5EVlasBGXTBnj_MfgVP9Qe_oQF7VPbd1IL3e_nSvc/edit?gid=1521086614#gid=1521086614 there is the vago-sympathetic trunk too. We need to speak to Bernard.
inferior cervical ganglion or middle cervical ganglion with axon sensory terminals in aorta tunica adventitia or pulmonary artery tunica adventitia via aortic arch depressor nerve with axon terminal in inferior cervical ganglion or middle cervical ganglion
In dog, domestic pig and human, the connection goes from middle cervical ganglion to middle cervical ganglion; from inferior cervical ganglion or middle cervical ganglion to ascending aorta (aorta tunica adventitia) or pulmonary artery (tunica adventitia of artery) via Aortic arch depressor nerve; from inferior cervical ganglion to inferior cervical ganglion. This sensory connection projects from the middle cervical ganglion and inferior cervical ganglion. It is described in UCLA model of the heart model.
19 Aug 2025: changed aorta to ascending aorta to be more granular.
inferior cervical ganglion middle cervical ganglion (with-axon-presynaptic-element-in inferior cervical ganglion middle cervical ganglion) (projecting-onto ilxtr:neuron-type-aacar-2i ilxtr:neuron-type-aacar-2m) (implies Canis lupus familiaris Domestic Pig Homo sapiens sensory neuron)
from middle cervical ganglion to middle cervical ganglion from inferior cervical ganglion or middle cervical ganglion to ascending aorta (aorta tunica adventitia) or pulmonary artery (tunica adventitia of artery) via Aortic arch depressor nerve from inferior cervical ganglion to inferior cervical ganglion
this ApiNATOMY population has a colocated axon and soma. need to revisit?\nAdded Jeff Ardell as expert\nChanged aorta (aorta tunica aventiticia) to ascending aorta (aorta tunica aventiticia) to match changes requested for population 119 (aacar 11)\nIs it a problem that the via is linked to the axon terminal instead of the soma location? \nFixed A to B via C
C6-T6 dorsal root ganglia with axon sensory terminals in left ventricle of the heart (endothelium or myometrium) or right ventricle of the heart (endothelium or myometrium) or heart epicardium via epicardium with axon terminal in C7 lamina I via C7 white matter of spinal cord or an unknown part of the CNS
In dog, domestic pig and human, the connection goes from eighth cervical dorsal root ganglion or fifth thoracic dorsal root ganglion or first thoracic dorsal root ganglion or fourth thoracic spinal ganglion or second thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion or sixth thoracic dorsal root ganglion or third thoracic dorsal root ganglion to heart right ventricle (endocardium) or heart right ventricle (myocardium) via heart (epicardium) via heart right ventricle (myocardium); from fifth thoracic dorsal root ganglion to central nervous system via T5 segment of thoracic spinal cord (white matter of spinal cord); from eighth cervical dorsal root ganglion or fifth thoracic dorsal root ganglion or first thoracic dorsal root ganglion or fourth thoracic spinal ganglion or second thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion or sixth thoracic dorsal root ganglion or third thoracic dorsal root ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) via heart (epicardium) via heart left ventricle (myocardium); from eighth cervical dorsal root ganglion or fifth thoracic dorsal root ganglion or first thoracic dorsal root ganglion or fourth thoracic spinal ganglion or second thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion or sixth thoracic dorsal root ganglion or third thoracic dorsal root ganglion to heart (epicardium) via heart (epicardium); from eighth cervical dorsal root ganglion to central nervous system via C8 segment of cervical spinal cord (white matter of spinal cord); from fourth thoracic spinal ganglion to central nervous system via T4 segment of thoracic spinal cord (white matter of spinal cord); from sixth cervical dorsal root ganglion to central nervous system via C6 segment of cervical spinal cord (white matter of spinal cord); from seventh cervical dorsal root ganglion to C7 segment of cervical spinal cord (lamina I of gray matter of spinal cord) via C7 segment of cervical spinal cord (white matter of spinal cord); from sixth thoracic dorsal root ganglion to central nervous system via T6 segment of thoracic spinal cord (white matter of spinal cord); from third thoracic dorsal root ganglion to central nervous system via T3 segment of thoracic spinal cord (white matter of spinal cord); from second thoracic dorsal root ganglion to central nervous system via T2 segment of thoracic spinal cord (white matter of spinal cord); from first thoracic dorsal root ganglion to central nervous system via T1 segment of thoracic spinal cord (white matter of spinal cord). This sensory connection projects from the eighth cervical dorsal root ganglion, second thoracic dorsal root ganglion, fourth thoracic spinal ganglion, fifth thoracic dorsal root ganglion, sixth cervical dorsal root ganglion, first thoracic dorsal root ganglion, sixth thoracic dorsal root ganglion, seventh cervical dorsal root ganglion and third thoracic dorsal root ganglion. It is described in UCLA model of the heart model.
15 Aug 2025: changed the termination in C6-T6 (except C7) to "central nervous system" since we don't know where it is exactly. white matter layer of those regions (C6-T6 (except C7)) have become axon locations.
eighth cervical dorsal root ganglion fifth thoracic dorsal root ganglion first thoracic dorsal root ganglion fourth thoracic spinal ganglion second thoracic dorsal root ganglion seventh cervical dorsal root ganglion sixth cervical dorsal root ganglion sixth thoracic dorsal root ganglion third thoracic dorsal root ganglion (with-axons-in (intersection-of-part-of white matter of spinal cord C6 segment of cervical spinal cord) (intersection-of-part-of white matter of spinal cord C7 segment of cervical spinal cord) (intersection-of-part-of white matter of spinal cord C8 segment of cervical spinal cord) (intersection-of-part-of white matter of spinal cord T1 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T2 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T3 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T4 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T5 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T6 segment of thoracic spinal cord)) (with-axon-presynaptic-element-in (intersection-of-part-of lamina I of gray matter of spinal cord C7 segment of cervical spinal cord) CNS) (projecting-onto ilxtr:neuron-type-aacar-14) (implies Canis lupus familiaris Domestic Pig Homo sapiens sensory neuron)
from eighth cervical dorsal root ganglion or fifth thoracic dorsal root ganglion or first thoracic dorsal root ganglion or fourth thoracic spinal ganglion or second thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion or sixth thoracic dorsal root ganglion or third thoracic dorsal root ganglion to heart right ventricle (endocardium) or heart right ventricle (myocardium) via heart (epicardium) via heart right ventricle (myocardium) from fifth thoracic dorsal root ganglion to central nervous system via T5 segment of thoracic spinal cord (white matter of spinal cord) from eighth cervical dorsal root ganglion or fifth thoracic dorsal root ganglion or first thoracic dorsal root ganglion or fourth thoracic spinal ganglion or second thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion or sixth thoracic dorsal root ganglion or third thoracic dorsal root ganglion to heart left ventricle (endocardium) or heart left ventricle (myocardium) via heart (epicardium) via heart left ventricle (myocardium) from eighth cervical dorsal root ganglion or fifth thoracic dorsal root ganglion or first thoracic dorsal root ganglion or fourth thoracic spinal ganglion or second thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion or sixth thoracic dorsal root ganglion or third thoracic dorsal root ganglion to heart (epicardium) via heart (epicardium) from eighth cervical dorsal root ganglion to central nervous system via C8 segment of cervical spinal cord (white matter of spinal cord) from fourth thoracic spinal ganglion to central nervous system via T4 segment of thoracic spinal cord (white matter of spinal cord) from sixth cervical dorsal root ganglion to central nervous system via C6 segment of cervical spinal cord (white matter of spinal cord) from seventh cervical dorsal root ganglion to C7 segment of cervical spinal cord (lamina I of gray matter of spinal cord) via C7 segment of cervical spinal cord (white matter of spinal cord) from sixth thoracic dorsal root ganglion to central nervous system via T6 segment of thoracic spinal cord (white matter of spinal cord) from third thoracic dorsal root ganglion to central nervous system via T3 segment of thoracic spinal cord (white matter of spinal cord) from second thoracic dorsal root ganglion to central nervous system via T2 segment of thoracic spinal cord (white matter of spinal cord) from first thoracic dorsal root ganglion to central nervous system via T1 segment of thoracic spinal cord (white matter of spinal cord)
C8 to central nervous system was missing\nC8 fix cns white matter -> white matter of spinal cord to match other segments\nadded zenodo; added jeff ardell as expert, removed github\ndiscussed epicardium with Tom and Fahim, and it's modeled correctly here in Composer *and* ApiNATOMY so we're good to go. in the dif review, the visibility to having an anatomy only listed ONCE was obscuring the partial order as defined in APINATOMY.\nupdated to match the diagram provided by Fahim's tool: https://sckan-partial-order.netlify.app/; in particular - the termination for all spinal cord segments except C7 were demoted to vias - and a terminal was added to "Central Nervous System" so that it terminates in "some part of CNS". Need to understand if epicardium is a terminal & a via.\nThis one needs to be re-reviewed.\nIlias - for this population, i think i was looking at an old svg diagram. C7 has population 14. Can you correct this?
C7 lamina I to C7 lamina VII or grey commissure of C7
This neuron population, aacar 14, is the result of the May 2023 discussion with Bernard de Bono, Jeff Ardell, and Robert Foreman that focused on bridging the DRG sensory neurons returning nociceptive signals from the heart, synapsing with a (green) interneuron (aacar-14) in Rexed Lamina I to project to Rexed laminae VIII and X. In the latter, projections via neuron family 15 relay, via the funicular tracts, feedback to the NTS.
In dog, domestic pig and human, the connection goes from C7 segment of cervical spinal cord (lamina I of gray matter of spinal cord) to C7 segment of cervical spinal cord (lamina VII of gray matter of spinal cord) or C7 segment of cervical spinal cord (spinal cord gray commissure). This intrinsic connection projects from the C7 segment of cervical spinal cord (lamina I of gray matter of spinal cord). It is described in UCLA model of the heart model.
(intersection-of-part-of lamina I of gray matter of spinal cord C7 segment of cervical spinal cord) (with-axon-presynaptic-element-in (intersection-of-part-of C7 segment of cervical spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of spinal cord gray commissure C7 segment of cervical spinal cord)) (projecting-onto ilxtr:neuron-type-aacar-15) (implies Canis lupus familiaris Domestic Pig Homo sapiens intrinsic neuron)
from C7 segment of cervical spinal cord (lamina I of gray matter of spinal cord) to C7 segment of cervical spinal cord (lamina VII of gray matter of spinal cord) or C7 segment of cervical spinal cord (spinal cord gray commissure)
added zenodo; added jeff ardell as expert, removed github, updated sentence to add "aacar 14 from " and remove "none from"\nConfirmed that this population exactly matches the diagram drawn by Fahim's application: https://sckan-partial-order.netlify.app/\nremoved non-resolving ILX uri from provenance\nI have moved the statement note to an alert note, since i think this is relevant information that we might want to surface elsewhere.\nThis is an interneuron, but we do not have a phenotype for this in Composer. When available, please update.
commissura grisea anaterior medullae spinalis
commissura grisea posterior medulla spinalis
C7 (spinal cord gray commissure) to NTS via C7 (spinal cord white matter) via funiculus of spinal cord via medulla oblongata
In dog, domestic pig and human, the connection goes from C7 segment of cervical spinal cord (spinal cord gray commissure) to nucleus of solitary tract via C7 segment of cervical spinal cord (white matter of spinal cord) via C6 segment of cervical spinal cord (white matter of spinal cord) via C5 segment of cervical spinal cord (white matter of spinal cord) via C4 segment of cervical spinal cord (white matter of spinal cord) via C3 segment of cervical spinal cord (white matter of spinal cord) via C2 segment of cervical spinal cord (white matter of spinal cord) via C1 segment of cervical spinal cord (white matter of spinal cord) via medulla oblongata. This spinal cord ascending projection phenotype connection projects from the C7 segment of cervical spinal cord (spinal cord gray commissure). It is described in UCLA model of the heart model.
15 Aug 2025: removed funiculus of spinal cord from partial order, but added it as distinct axon located in region, since the funiculus is the layer in the white matter layer of each segment. Added each segment's white matter layer instead, since that's more descriptive for the partial order.
(intersection-of-part-of spinal cord gray commissure C7 segment of cervical spinal cord) (with-axons-in (intersection-of-part-of white matter of spinal cord C1 segment of cervical spinal cord) (intersection-of-part-of white matter of spinal cord C2 segment of cervical spinal cord) (intersection-of-part-of white matter of spinal cord C3 segment of cervical spinal cord) (intersection-of-part-of white matter of spinal cord C4 segment of cervical spinal cord) (intersection-of-part-of white matter of spinal cord C5 segment of cervical spinal cord) (intersection-of-part-of white matter of spinal cord C6 segment of cervical spinal cord) (intersection-of-part-of white matter of spinal cord C7 segment of cervical spinal cord) bulb funiculus of spinal cord) (with-axon-presynaptic-element-in nucleus of solitary tract) neuron (implies Canis lupus familiaris Domestic Pig Homo sapiens (projecting-to Spinal cord ascending projection))
from C7 segment of cervical spinal cord (spinal cord gray commissure) to nucleus of solitary tract via C7 segment of cervical spinal cord (white matter of spinal cord) via C6 segment of cervical spinal cord (white matter of spinal cord) via C5 segment of cervical spinal cord (white matter of spinal cord) via C4 segment of cervical spinal cord (white matter of spinal cord) via C3 segment of cervical spinal cord (white matter of spinal cord) via C2 segment of cervical spinal cord (white matter of spinal cord) via C1 segment of cervical spinal cord (white matter of spinal cord) via medulla oblongata
Added zenodo DOI, moved Ardell from Provenance to Expert; removed github link. Renamed sentence title from "none imported from neurondm" to "aacar 15 imported..."\nremoved funiculus from the partial order, replaced it with C6-T6 white matter tracts.\nremoved non-resolving ILX uri from provenance\nThis population is good to go, @ilias if you agree?\nadded C7 segment of cervical spinal cord (white matter of spinal cord) to via (axon location).\nRemoved origin: C7 segment of cervical spinal cord (central nervous system white matter layer)\nBernard provided citations, and notes regarding additional evidence for this cardiac nociceptive pathway.
paraventricular nucleus of hypothalamus to T1 spinal cord (rexed lamina VII) via diencephalon via midbrain via pons via medulla oblongata via C1-C8 and T1 spinal cord segments
A connection goes from paraventricular nucleus of hypothalamus to Rexed Lamina VII of T1 via paraventricular nucleus of hypothalamus via hypothalamus via diencephalon via midbrain via pons via medulla oblongata via C1 segment of cervical spinal cord via C2 segment of cervical spinal cord via C3 segment of cervical spinal cord via C4 segment of cervical spinal cord via C5 segment of cervical spinal cord via C6 segment of cervical spinal cord via C7 segment of cervical spinal cord via C8 segment of cervical spinal cord via T1 segment of thoracic spinal cord. This spinal cord descending projection phenotype connection projects from the paraventricular nucleus of hypothalamus. It is described in Bolser-Lewis model of defensive breathing model.
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed. 14 Aug 2025: Added hypothalamus, diencephalon and T1 segment of spinal cord as vias in partial order, created rexed lamina VII of T1 as the axon terminal. updated forward connections to match new destination.
Pa (with-axons-in C1 segment of cervical spinal cord C2 segment of cervical spinal cord C3 segment of cervical spinal cord C4 segment of cervical spinal cord C5 segment of cervical spinal cord C6 segment of cervical spinal cord C7 segment of cervical spinal cord C8 segment of cervical spinal cord DiE Hy MB T1 segment of thoracic spinal cord bulb pons) (with-axon-presynaptic-element-in Rexed Lamina VII of T1) (projecting-onto ilxtr:neuron-type-bolew-unbranched-2 ilxtr:neuron-type-bolew-unbranched-3) neuron (implies (projecting-to Spinal cord descending projection))
from paraventricular nucleus of hypothalamus to Rexed Lamina VII of T1 via paraventricular nucleus of hypothalamus via hypothalamus via diencephalon via midbrain via pons via medulla oblongata via C1 segment of cervical spinal cord via C2 segment of cervical spinal cord via C3 segment of cervical spinal cord via C4 segment of cervical spinal cord via C5 segment of cervical spinal cord via C6 segment of cervical spinal cord via C7 segment of cervical spinal cord via C8 segment of cervical spinal cord via T1 segment of thoracic spinal cord
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded missing dendrite location\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nUpdated destination to rexed lamina VII of T1; demoted T1 to via. need to fix forward populations.\nupdated to match exactly https://sckan-partial-order.netlify.app/ ; question is the same as with bolew-6 and bolew-7 about destination.\nremoved unresolving link from provenance: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-1\nDECISION: removed the designation of populations 2 and 3 as forward connections for this population, since the drawing indicates these populations are not directly placed near each other. Bernard affirmed this decision on 6/6/2024 \nREGION/LAYER REVIEW REQUEST: added lamina VII as layer for T1 since it was specified in the drawing, but wasn't specified in neuronDM; \nAFFERENT TERMINAL QUESTION: add this for PVN?\n(dendrite is not specified for this population, but is for others...in some cases i modified those to be (afferent terminals) to indicate that the dendrites do not extend beyond the current region - but this is very inconsistently applied at present (even within bolew). \n \nAdditionally, i don't believe that forward connections for populations 2 & 3 are correct, but that's an assumption i'm making from the drawing). Please review?\nUnable to add projection phenotype of spinal cord descending projection phenotype; Additionally, need to remove "not specified" (ANS) phenotype when possible.
T1 spinal cord (rexed lamina VII) to superior cervical ganglion via T1 ventral root via T1 white communicating ramus via T1 sympathetic chain ganglion via T1-inferior cervical ganglion interganglionic segment via inferior cervical ganglion via inferior cervical ganglion-middle cervical ganglion interganglionic segment via middle cervical ganglion via middle cervical ganglion-superior cervical ganglion interganglionic segment
A sympathetic pre-ganglionic connection goes from Rexed Lamina VII of T1 to superior cervical ganglion via T1 segment of thoracic spinal cord via ventral root of the first thoracic spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - inferior cervical ganglion interganglionic segment of the sympathetic chain via inferior cervical ganglion via inferior cervical ganglion - middle cervical ganglion interganglionic segment of the sympathetic chain via middle cervical ganglion via middle cervical ganglion - superior cervical ganglion interganglionic segment of the sympathetic chain. This connection projects from the Rexed Lamina VII of T1. It is described in Bolser-Lewis model of defensive breathing model.
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed. 14 Aug 2025: added dendrite to rexed lamina VII of T1; set soma to same location (rexed lamina of T1); add T1 as a via in the partial order.
Rexed Lamina VII of T1 (with-axons-in T1 - inferior cervical ganglion interganglionic segment of the sympathetic chain T1 segment of thoracic spinal cord T1 sympathetic chain ganglion inferior cervical ganglion inferior cervical ganglion - middle cervical ganglion interganglionic segment of the sympathetic chain middle cervical ganglion middle cervical ganglion - superior cervical ganglion interganglionic segment of the sympathetic chain ventral root of the first thoracic spinal cord segment white communicating ramus of first thoracic spinal nerve) (with-axon-presynaptic-element-in superior cervical ganglion) (projecting-onto ilxtr:neuron-type-bolew-unbranched-13 ilxtr:neuron-type-bolew-unbranched-14 ilxtr:neuron-type-bolew-unbranched-15 ilxtr:neuron-type-bolew-unbranched-16 ilxtr:neuron-type-bolew-unbranched-17 ilxtr:neuron-type-bolew-unbranched-18 ilxtr:neuron-type-bolew-unbranched-19 ilxtr:neuron-type-bolew-unbranched-20 ilxtr:neuron-type-bolew-unbranched-21 ilxtr:neuron-type-bolew-unbranched-22 ilxtr:neuron-type-bolew-unbranched-23 ilxtr:neuron-type-bolew-unbranched-24 ilxtr:neuron-type-bolew-unbranched-25 ilxtr:neuron-type-bolew-unbranched-26 ilxtr:neuron-type-bolew-unbranched-27 ilxtr:neuron-type-bolew-unbranched-28 ilxtr:neuron-type-bolew-unbranched-29) neuron (implies Sympathetic Pre-Ganglionic)
from Rexed Lamina VII of T1 to superior cervical ganglion via T1 segment of thoracic spinal cord via ventral root of the first thoracic spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via T1 - inferior cervical ganglion interganglionic segment of the sympathetic chain via inferior cervical ganglion via inferior cervical ganglion - middle cervical ganglion interganglionic segment of the sympathetic chain via middle cervical ganglion via middle cervical ganglion - superior cervical ganglion interganglionic segment of the sympathetic chain
10/30/25 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nUpdated to indicate the soma is Rexed lamina Vii of t1; demoted t1 to a via; need to determine if we have forward connections and where to confirm them.\nThis population has a soma with a region(layer) pair, but it's not depicted that way on the diagram. Update as necessary to match if modeling should be just exactly as shown in Fahim's diagram: https://sckan-partial-order.netlify.app/ Added dendrite to conform with diagram and Apinatomy svg\nremoved unresolving ILX URI from provenance\nRemoved non-resolving link from provenance: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-2\nDECISION APPLIED: all forward connections removed based on KCORE meeting notes affirmed by Bernard. \nREGION REVIEW: added Layer VII for T1 because it was in the drawing but not specified in the axioms imported from SCKAN. pls. confirm.\nForward connections seem to have been automatically added by Composer based on presences of somas in that destination region, is that the case? c.f. pdf of bolew apinatomy model. If this is the case, the population needs to be revised to remove the forward connections.
T1 spinal cord (rexed lamina VII) to T1-T2 intercostal muscle via T1 ventral root
A sympathetic pre-ganglionic connection goes from Rexed Lamina VII of T1 to T1-T2 intercostal muscle via T1 segment of thoracic spinal cord (Neural tissue of T1) via ventral root of the first thoracic spinal cord segment. This connection projects from the Rexed Lamina VII of T1. It is described in Bolser-Lewis model of defensive breathing model.
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed. 14 Aug 2025: updated soma location and added dendrite to Rexed lamina VII of T1, created 1st via as T1 segment of thoracic spinal cord (neural tissue of T1)
Rexed Lamina VII of T1 (with-axons-in (intersection-of-part-of T1 segment of thoracic spinal cord Neural tissue of T1) ventral root of the first thoracic spinal cord segment) (with-axon-presynaptic-element-in T1-T2 intercostal muscle) neuron (implies Sympathetic Pre-Ganglionic)
from Rexed Lamina VII of T1 to T1-T2 intercostal muscle via T1 segment of thoracic spinal cord (Neural tissue of T1) via ventral root of the first thoracic spinal cord segment
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nupdated soma representation to be rexed lamina VII of t1 and first via as T1 segment of thoracic spinal cord (Neural tissue of T1) which is consistent with fahim's diagram, but not consistent with BOLEW-2 or BOLEW-1\nUpdated to match Fahim's diagram https://sckan-partial-order.netlify.app/ and to add dendrite. Need to keep the correct soma representation, once that's confirmed, so this isn't finalized yet.\nsorry, meant to say that I removed the non-resolving link : http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-3\nhttp://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-3
paraventricular nucleus hypothalamus (Malone)
paraventricular nucleus of the hypothalamus
Spinal cord descending projection phenotype
projects in the posterior direction of the spinal cord
superior cervical ganglion to aortic arch baroreceptors of wall of arch of aorta via middle cervical ganglion-superior cervical ganglion interganglionic segment via middle cervical ganglion via inferior cervical ganglion-middle cervical ganglion interganglionic segment via inferior cervical ganglion
A sympathetic post-ganglionic connection goes from superior cervical ganglion to Aortic arch baroreceptors via middle cervical ganglion - superior cervical ganglion interganglionic segment of the sympathetic chain via middle cervical ganglion via inferior cervical ganglion - middle cervical ganglion interganglionic segment of the sympathetic chain via inferior cervical ganglion via arch of aorta (Wall of arch of aorta). This connection projects from the superior cervical ganglion. It is described in Bolser-Lewis model of defensive breathing model.
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed. 14 Aug 2025: added dendrite in SCG.
superior cervical ganglion (with-axons-in (intersection-of-part-of arch of aorta Wall of arch of aorta) inferior cervical ganglion inferior cervical ganglion - middle cervical ganglion interganglionic segment of the sympathetic chain middle cervical ganglion middle cervical ganglion - superior cervical ganglion interganglionic segment of the sympathetic chain) (with-axon-presynaptic-element-in Aortic arch baroreceptors) neuron (implies Sympathetic Post-Ganglionic)
from superior cervical ganglion to Aortic arch baroreceptors via middle cervical ganglion - superior cervical ganglion interganglionic segment of the sympathetic chain via middle cervical ganglion via inferior cervical ganglion - middle cervical ganglion interganglionic segment of the sympathetic chain via inferior cervical ganglion via arch of aorta (Wall of arch of aorta)
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nneed to confirm that this is modeled as desired.\nper tom, do not do SCG (neural tissue of SCG) for soma or dendrites. still confused about cell types being a termination but not a locational phenotype [i.e., what's the deal with population/forward connection]\nremoved non-resolving link from provenance: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-13\nAdded back the dendrite as "afferent terminal" as indicated in a comment by Sue below. Will model the same all the SCG neurons.\nDiscussed in KCORE lab meeting that due to the drawing that cell populations that are not drawn immediately adjacent , they should not be marked as forward connections. \nQUESTION: Does the modeling of region(layer) for SCG (neural tissue) have any impacts on MAPCore? Does this modeling convey a particular benefit for NPO/modeling. \nDECISION: model dendrites as AFFERENT TERMINAL (rather than dendrite (which is a via)), to indicate that the dendrite doesn't leave the region specified. CONFIRMED by Bernard in KCORE meeting as correct.\nAsk Tom: keep the afferent terminal (aka dendrite) in SCG?\nupdated phenotype from post-ganglionic to sympathetic post-ganglionic
superior cervical ganglion to carotid body in wall of common carotid artery via external carotid nerve plexus via ganglioglomerular nerve
A sympathetic post-ganglionic connection goes from superior cervical ganglion to carotid body via External carotid nerve plexus via Ganglioglomerular nerve via common carotid artery plus branches (wall of common carotid artery). This connection projects from the superior cervical ganglion. It is described in Bolser-Lewis model of defensive breathing model.
superior cervical ganglion (with-axons-in (intersection-of-part-of common carotid artery plus branches wall of common carotid artery) External carotid nerve plexus Ganglioglomerular nerve) (with-axon-presynaptic-element-in carotid body) neuron (implies Sympathetic Post-Ganglionic)
from superior cervical ganglion to carotid body via External carotid nerve plexus via Ganglioglomerular nerve via common carotid artery plus branches (wall of common carotid artery)
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nupdated to match diagram as created by Fahim's tool https://sckan-partial-order.netlify.app/. Composer already had the external carotid nerve plexus included however. Added dendrite.\ni meant to say, removed non-resolving link from provenance : http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-14\nRemoved non-resolving link from provenance: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-23\n@ilias - this is tagged as you reviewed it with Bernard. Can we move it to NPO approved?\nDeleted the "afferent terminal" destination that was representing the dendrite.\nDeleted the "axon afferent" destination that was representing the dendrite.\nDeleted the dendrite. There is no need to represent the dendrite in the autonomic neurons. Confirming this with Sue.
superior cervical ganglion to carotid sinus of internal carotid artery via external carotid nerve plexus via ganglioglomerular nerve
A sympathetic post-ganglionic connection goes from superior cervical ganglion to carotid sinus via External carotid nerve plexus via Ganglioglomerular nerve via internal carotid artery (wall of internal carotid artery). This connection projects from the superior cervical ganglion. It is described in Bolser-Lewis model of defensive breathing model.
superior cervical ganglion (with-axons-in (intersection-of-part-of internal carotid artery wall of internal carotid artery) External carotid nerve plexus Ganglioglomerular nerve) (with-axon-presynaptic-element-in carotid sinus) neuron (implies Sympathetic Post-Ganglionic)
from superior cervical ganglion to carotid sinus via External carotid nerve plexus via Ganglioglomerular nerve via internal carotid artery (wall of internal carotid artery)
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nupdated to exactly match diagram in Fahim's tool https://sckan-partial-order.netlify.app/ ; added dendrite in SCG\nremoved unresolving ILX URI from provenance\nremoved non-resolving provenance: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-15\nAsk TOM/Bernard: The use of dendrites is not consistently used across ApiNATOMY models. should it be present/retained in bolew?
superior cervical ganglion to larynx wall via external carotid nerve plexus via vagus nerve via superior laryngeal nerve via external branch of superior laryngeal nerve
A sympathetic post-ganglionic connection goes from superior cervical ganglion to larynx (Wall of larynx) via External carotid nerve plexus via vagus nerve via superior laryngeal nerve via External branch of superior laryngeal nerve. This connection projects from the superior cervical ganglion. It is described in Bolser-Lewis model of defensive breathing model.
superior cervical ganglion (with-axons-in 10n External branch of superior laryngeal nerve External carotid nerve plexus superior laryngeal nerve) (with-axon-presynaptic-element-in (intersection-of-part-of larynx Wall of larynx)) neuron (implies Sympathetic Post-Ganglionic)
from superior cervical ganglion to larynx (Wall of larynx) via External carotid nerve plexus via vagus nerve via superior laryngeal nerve via External branch of superior laryngeal nerve
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nupdated the A2BvC to match the path (remove mucosa, replace with wall of larynx)\ndendrite added, neural tissue layer removed from SCG.\nupdated to exactly match as drawn in Fahim's tool https://sckan-partial-order.netlify.app/\nremoved unresolving ILX URI from provenance\nremoved unresolving link from provenance: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-16\nREGION/LAYER REVIEW REQUEST: should origin have a layer? should axon terminal destination instead be referenced as region(layer): larynx(mucosa)?
superior cervical ganglion to larynx wall via external carotid nerve plexus via vagus nerve via superior laryngeal nerve via Internal branch of superior laryngeal nerve
A sympathetic post-ganglionic connection goes from superior cervical ganglion to larynx (Wall of larynx) via External carotid nerve plexus via vagus nerve via superior laryngeal nerve via Internal branch of superior laryngeal nerve. This connection projects from the superior cervical ganglion. It is described in Bolser-Lewis model of defensive breathing model.
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed. 14 Aug 2025: Added dendrite in SCG; changed larynx muscosa to wall of larynx.
superior cervical ganglion (with-axons-in 10n External carotid nerve plexus Internal branch of superior laryngeal nerve superior laryngeal nerve) (with-axon-presynaptic-element-in (intersection-of-part-of larynx Wall of larynx)) neuron (implies Sympathetic Post-Ganglionic)
from superior cervical ganglion to larynx (Wall of larynx) via External carotid nerve plexus via vagus nerve via superior laryngeal nerve via Internal branch of superior laryngeal nerve
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nupdated to exactly match the diagram provided by https://sckan-partial-order.netlify.app/ \nAdded dendrite in SCG \nchanged larynx muscosa to wall of larynx.\nremoved unresolving ILX URI from provenance\nremoved unresolving link from provenance: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-23\nAsk TOM: should this be a single UBERON term (mucosa of larynx) or region(layer), i.e. larynx (mucosa)?
superior cervical ganglion to mucosa of epiglottis via external carotid nerve plexus via vagus nerve via superior laryngeal nerve via external branch of superior laryngeal nerve
A sympathetic post-ganglionic connection goes from superior cervical ganglion to epiglottis (mucosa of epiglottis) via External carotid nerve plexus via vagus nerve via superior laryngeal nerve via External branch of superior laryngeal nerve. This connection projects from the superior cervical ganglion. It is described in Bolser-Lewis model of defensive breathing model.
superior cervical ganglion (with-axons-in 10n External branch of superior laryngeal nerve External carotid nerve plexus superior laryngeal nerve) (with-axon-presynaptic-element-in (intersection-of-part-of epiglottis mucosa of epiglottis)) neuron (implies Sympathetic Post-Ganglionic)
from superior cervical ganglion to epiglottis (mucosa of epiglottis) via External carotid nerve plexus via vagus nerve via superior laryngeal nerve via External branch of superior laryngeal nerve
added zenodo; added stephen lewis & don bolser as experts, removed github\nupdated to exactly match the diagram provided by https://sckan-partial-order.netlify.app/ \nAdded dendrite in SCG\nRemoved unresolving link from provenance: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-23\nDECIsion: added dendrite as drawn in apinatomy diagram as an afferent terminal in the region specified; no via.
superior cervical ganglion to mucosa of epiglottis via external carotid nerve plexus via vagus nerve via superior laryngeal nerve via Internal branch of superior laryngeal nerve
A sympathetic post-ganglionic connection goes from superior cervical ganglion to epiglottis (mucosa of epiglottis) via External carotid nerve plexus via vagus nerve via superior laryngeal nerve via Internal branch of superior laryngeal nerve. This connection projects from the superior cervical ganglion. It is described in Bolser-Lewis model of defensive breathing model.
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed. 14 Aug 2025 : Added dendrite in SCG
superior cervical ganglion (with-axons-in 10n External carotid nerve plexus Internal branch of superior laryngeal nerve superior laryngeal nerve) (with-axon-presynaptic-element-in (intersection-of-part-of epiglottis mucosa of epiglottis)) neuron (implies Sympathetic Post-Ganglionic)
from superior cervical ganglion to epiglottis (mucosa of epiglottis) via External carotid nerve plexus via vagus nerve via superior laryngeal nerve via Internal branch of superior laryngeal nerve
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nupdated to exactly match the diagram provided by https://sckan-partial-order.netlify.app/ Added dendrite in SCG.\nremoved non-resolving link from provenance: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-19\nREGION/LAYER REVIEW REQUEST: origin region/layer? also for the destination: should it be epiglottis(mucosa) instead of region(region) that it is right now.
superior cervical ganglion to mucosa of epiglottis via external carotid nerve plexus via vagus nerve via recurrent (inferior) laryngeal nerve via external branch of inferior laryngeal nerve
A sympathetic post-ganglionic connection goes from superior cervical ganglion to epiglottis (mucosa of epiglottis) via External carotid nerve plexus via vagus nerve via recurrent laryngeal nerve via External branch of inferior laryngeal nerve. This connection projects from the superior cervical ganglion. It is described in Bolser-Lewis model of defensive breathing model.
superior cervical ganglion (with-axons-in 10n External branch of inferior laryngeal nerve External carotid nerve plexus recurrent laryngeal nerve) (with-axon-presynaptic-element-in (intersection-of-part-of epiglottis mucosa of epiglottis)) neuron (implies Sympathetic Post-Ganglionic)
from superior cervical ganglion to epiglottis (mucosa of epiglottis) via External carotid nerve plexus via vagus nerve via recurrent laryngeal nerve via External branch of inferior laryngeal nerve
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nupdated to exactly match the diagram provided by https://sckan-partial-order.netlify.app/ Added dendrite in SCG.\nremoved unresolving ILX URI from provenance\nremoved non-resolving link from provenance: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-20\nI am being consistent with this and adding region(layer) for all these connections. In this case epiglottis (mucosa of epiglottis).\nREVIEW: please let me know if it should be region (layer) [epiglottis(mucosa)] or the single uberon term mucosa of epiglottis.
superior cervical ganglion to mucosa of epiglottis via external carotid nerve plexus via vagus nerve via recurrent (inferior) laryngeal nerve via Internal branch of inferior laryngeal nerve
A sympathetic post-ganglionic connection goes from superior cervical ganglion to epiglottis (mucosa of epiglottis) via External carotid nerve plexus via vagus nerve via recurrent laryngeal nerve via Internal branch of inferior laryngeal nerve. This connection projects from the superior cervical ganglion. It is described in Bolser-Lewis model of defensive breathing model.
superior cervical ganglion (with-axons-in 10n External carotid nerve plexus Internal branch of inferior laryngeal nerve recurrent laryngeal nerve) (with-axon-presynaptic-element-in (intersection-of-part-of epiglottis mucosa of epiglottis)) neuron (implies Sympathetic Post-Ganglionic)
from superior cervical ganglion to epiglottis (mucosa of epiglottis) via External carotid nerve plexus via vagus nerve via recurrent laryngeal nerve via Internal branch of inferior laryngeal nerve
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nupdated to exactly match the diagram provided by https://sckan-partial-order.netlify.app/ Added dendrite in SCG\nremoved unresolving link from provenances: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-21\nQUESTION: for this population, should the region layer pair be used as written? two regions instead of region(general tissue layer) [i.e., epiglottis (mucosa)]
superior cervical ganglion to mucosa of tongue via external carotid nerve plexus
A sympathetic post-ganglionic connection goes from superior cervical ganglion to tongue (mucosa of tongue) via External carotid nerve plexus. This connection projects from the superior cervical ganglion. It is described in Bolser-Lewis model of defensive breathing model.
superior cervical ganglion (with-axon-in External carotid nerve plexus) (with-axon-presynaptic-element-in (intersection-of-part-of tongue mucosa of tongue)) neuron (implies Sympathetic Post-Ganglionic)
from superior cervical ganglion to tongue (mucosa of tongue) via External carotid nerve plexus
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nupdated to exactly match the diagram provided by https://sckan-partial-order.netlify.app/ Added dendrite in SCG.\nremoved unresolving ILX URI from provenance
superior cervical ganglion to mucosa of tongue via internal carotid nerve plexus via hypoglossal nerve
A sympathetic post-ganglionic connection goes from superior cervical ganglion to tongue (mucosa of tongue) via internal carotid nerve plexus via hypoglossal nerve. This connection projects from the superior cervical ganglion. It is described in Bolser-Lewis model of defensive breathing model.
superior cervical ganglion (with-axons-in 12n internal carotid nerve plexus) (with-axon-presynaptic-element-in (intersection-of-part-of tongue mucosa of tongue)) neuron (implies Sympathetic Post-Ganglionic)
from superior cervical ganglion to tongue (mucosa of tongue) via internal carotid nerve plexus via hypoglossal nerve
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nupdated to exactly match the diagram provided by https://sckan-partial-order.netlify.app/ Added dendrite in SCG\nremoved this from provenances: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-23\nDECISION: changed dendrite to afferent terminal to match the diagram and to reflect that the dendrite doesn't leave the region (affirmed by Bernard in last lab meeting).
superior cervical ganglion to tracheal mucosa via postganglionic sympathetic fiber
A sympathetic post-ganglionic connection goes from superior cervical ganglion to trachea (tracheal mucosa) via postganglionic sympathetic fiber. This connection projects from the superior cervical ganglion. It is described in Bolser-Lewis model of defensive breathing model.
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed. 14 Aug 2025: removed layer from soma location, added dendrite in SCG.
superior cervical ganglion (with-axon-in postganglionic sympathetic fiber) (with-axon-presynaptic-element-in (intersection-of-part-of tracheal mucosa trachea)) neuron (implies Sympathetic Post-Ganglionic)
from superior cervical ganglion to trachea (tracheal mucosa) via postganglionic sympathetic fiber
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nremoved layer from soma location.\nupdated to exactly match the diagram provided by https://sckan-partial-order.netlify.app/ Added dendrite in SCG\nConfirmed with Bernard that I can add "postganglionic sympathetic fiber" because the axon is not know.\nDECISION: replaced dendrite with afferent terminal to reflect that the dendrite doesn't leave the region of interest as drawn in diagram. (affirmed by Bernard in lab meeting)
superior cervical ganglion to tracheal mucosa via internal carotid nerve plexus
A sympathetic post-ganglionic connection goes from superior cervical ganglion to trachea (tracheal mucosa) via internal carotid nerve plexus. This connection projects from the superior cervical ganglion. It is described in Bolser-Lewis model of defensive breathing model.
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed. 14 Aug 2025: updated to add dendrite in SCG and removed the layer from the soma location.
superior cervical ganglion (with-axon-in internal carotid nerve plexus) (with-axon-presynaptic-element-in (intersection-of-part-of tracheal mucosa trachea)) neuron (implies Sympathetic Post-Ganglionic)
from superior cervical ganglion to trachea (tracheal mucosa) via internal carotid nerve plexus
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nupdated to exactly match the diagram provided by https://sckan-partial-order.netlify.app/ Added dendrite in SCG changed soma location to remove layer.\nDECISION: updated dendrite to afferent terminal to indicate that the dendrite doesn't leave the region of interest (affirmed by Bernard in lab meeting 6/6/2024).
superior cervical ganglion to paraventricular nucleus of hypothalamus via internal carotid nerve plexus
A sympathetic post-ganglionic connection goes from superior cervical ganglion to paraventricular nucleus of hypothalamus via internal carotid nerve plexus via diencephalon via hypothalamus. This connection projects from the superior cervical ganglion. It is described in Bolser-Lewis model of defensive breathing model.
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed. 14 Aug 2025: Added dendrite in SCG, removed layer from soma, added hypothalamus and diencephalon to partial order.
superior cervical ganglion (with-axons-in DiE Hy internal carotid nerve plexus) (with-axon-presynaptic-element-in Pa) neuron (implies Sympathetic Post-Ganglionic)
from superior cervical ganglion to paraventricular nucleus of hypothalamus via internal carotid nerve plexus via diencephalon via hypothalamus
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nupdated to exactly match the diagram provided by https://sckan-partial-order.netlify.app/ Added dendrite in SCG , added diencephalon, added hypothalamus in partial order.\nremoved unresolving ILX URI from provenance\nremoved unresolving link from provenance: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-26\nConfirmed with Bernard that it goes only through the "internal carotid nerve plexus".\nThis population has a dendrite specified, and the population magically gets to the hypothalamic nucleus, the PVN, without explicitly going through the medulla, pons, & midbrain. Refer to Tom on whether this modeling should be the consistent mechanism.
superior cervical ganglion to retrotrapezoid nucleus via internal carotid nerve plexus
A sympathetic post-ganglionic connection goes from superior cervical ganglion to retrotrapezoid nucleus via internal carotid nerve plexus via medulla oblongata (Neural tissue of medulla). This connection projects from the superior cervical ganglion. It is described in Bolser-Lewis model of defensive breathing model.
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed. 14 Aug 2025: added dendrite in SCG, removed layer from soma, added medulla to partial order.
superior cervical ganglion (with-axons-in (intersection-of-part-of bulb) internal carotid nerve plexus) (with-axon-presynaptic-element-in retrotrapezoid nucleus) neuron (implies Sympathetic Post-Ganglionic)
from superior cervical ganglion to retrotrapezoid nucleus via internal carotid nerve plexus via medulla oblongata (Neural tissue of medulla)
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nupdated to exactly match the diagram provided by https://sckan-partial-order.netlify.app/ Added dendrite in SCG, removed layer from soma, added medullar oblongata to partial order.
superior cervical ganglion to rostral ventrolateral medulla via internal carotid nerve plexus
A sympathetic post-ganglionic connection goes from superior cervical ganglion to rostral ventrolateral medulla via internal carotid nerve plexus via medulla oblongata (Neural tissue of medulla). This connection projects from the superior cervical ganglion. It is described in Bolser-Lewis model of defensive breathing model.
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed. 14 Aug 2025: add dendrite in SCG; added medulla in the partial order.
superior cervical ganglion (with-axons-in (intersection-of-part-of bulb) internal carotid nerve plexus) (with-axon-presynaptic-element-in RVLM) neuron (implies Sympathetic Post-Ganglionic)
from superior cervical ganglion to rostral ventrolateral medulla via internal carotid nerve plexus via medulla oblongata (Neural tissue of medulla)
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nupdated to be consistent with diagram in Fahim's tool : https://sckan-partial-order.netlify.app/ ; added medulla oblongata (neural tissue of medulla) in partial order and dendrite in SCG\nremoved non-resolving interlex provenance: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-28\nThis statement has been reviewed by Ilias and Bernard, can we move it to NPO Approved @ilias?\nQuestion for TOM, regarding whether we include (neural tissue) as a layer for the superior cervical ganglion. Additionally, this population has a dendrite specified, as consistent with the ApiANTOMY drawing, just atypical for other ApiNATOMY models/populations. Should this be unified?
superior cervical ganglion to nucleus of solitary tract via internal carotid nerve plexus
A sympathetic post-ganglionic connection goes from superior cervical ganglion to nucleus of solitary tract via internal carotid nerve plexus via medulla oblongata (Neural tissue of medulla). This connection projects from the superior cervical ganglion. It is described in Bolser-Lewis model of defensive breathing model.
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed. 14 Aug 2025: added dendrite in SCG; added medulla in partial order.
superior cervical ganglion (with-axons-in (intersection-of-part-of bulb) internal carotid nerve plexus) (with-axon-presynaptic-element-in nucleus of solitary tract) neuron (implies Sympathetic Post-Ganglionic)
from superior cervical ganglion to nucleus of solitary tract via internal carotid nerve plexus via medulla oblongata (Neural tissue of medulla)
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nupdated to match diagram in Fahim's tool; added dendrite in SCG; added medulla in partial order.\nneed to determine if #1 we add dendrites, and #2 if some gets region (layer) or no.\nremoved non-resolving link from provenance: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-29\nDECISION: adjusted the dendrite to afferent terminal in the SCG, to indicate that the dendrite doesn't extend beyond the region. (affirmed by Bernard in lab meeting 6/6/2024).
C4 phrenic nucleus to diaphragm via phrenic nerve
A connection goes from Phrenic nucleus of C4 to diaphragm via Phrenic nucleus of C4 via C4 segment of cervical spinal cord (Neural tissue of C4) via phrenic nerve. This motor connection projects from the Phrenic nucleus of C4. It is described in Bolser-Lewis model of defensive breathing model.
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed. 14 Aug 2025: include C4 spinal cord segment as a via.
Phrenic nucleus of C4 (with-axons-in (intersection-of-part-of C4 segment of cervical spinal cord Neural tissue of C4) phrenic nerve) (with-axon-presynaptic-element-in diaphragm) (implies motor neuron)
from Phrenic nucleus of C4 to diaphragm via Phrenic nucleus of C4 via C4 segment of cervical spinal cord (Neural tissue of C4) via phrenic nerve
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nfix missing dendrite\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nupdated to exactly match diagram from Fahim's tool: https://sckan-partial-order.netlify.app/\nremoved unresolving ILX URI from provenance\nremoved unresolving link from provenance: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-23\nproblem with phenotype because it is motor? Needs to be filled in "phenotype"?\nAffected by the Composer requirement to set an (ANS) phenotype. Remove "not specified" when possible.
C5 phrenic nucleus to diaphragm via phrenic nerve
A connection goes from Phrenic nucleus of C5 to diaphragm via Phrenic nucleus of C5 via C5 segment of cervical spinal cord (Neural tissue of C5) via phrenic nerve. This motor connection projects from the Phrenic nucleus of C5. It is described in Bolser-Lewis model of defensive breathing model.
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed. 14 Aug 2025: updated to add C5 spinal cord segment as via.
Phrenic nucleus of C5 (with-axons-in (intersection-of-part-of C5 segment of cervical spinal cord Neural tissue of C5) phrenic nerve) (with-axon-presynaptic-element-in diaphragm) (implies motor neuron)
from Phrenic nucleus of C5 to diaphragm via Phrenic nucleus of C5 via C5 segment of cervical spinal cord (Neural tissue of C5) via phrenic nerve
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nfix missing dendrite\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nupdated to match exactly diagram in Fahim's tool : https://sckan-partial-order.netlify.app/\nRemoved non-resolving "http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-5" from provenances.
nucleus of solitary tract to layer VII of T1 spinal cord segment via C1-C8 and T1 spinal cord segment
A connection goes from nucleus of solitary tract to Rexed Lamina VII of T1 via nucleus of solitary tract via medulla oblongata (Neural tissue of medulla) via C1 segment of cervical spinal cord via C2 segment of cervical spinal cord via C3 segment of cervical spinal cord via C4 segment of cervical spinal cord via C5 segment of cervical spinal cord via C6 segment of cervical spinal cord via C7 segment of cervical spinal cord via C8 segment of cervical spinal cord via T1 segment of thoracic spinal cord. This spinal cord descending projection phenotype connection projects from the nucleus of solitary tract. It is described in Bolser-Lewis model of defensive breathing model.
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.
nucleus of solitary tract (with-axons-in (intersection-of-part-of bulb) C1 segment of cervical spinal cord C2 segment of cervical spinal cord C3 segment of cervical spinal cord C4 segment of cervical spinal cord C5 segment of cervical spinal cord C6 segment of cervical spinal cord C7 segment of cervical spinal cord C8 segment of cervical spinal cord T1 segment of thoracic spinal cord) (with-axon-presynaptic-element-in Rexed Lamina VII of T1) (projecting-onto ilxtr:neuron-type-bolew-unbranched-2 ilxtr:neuron-type-bolew-unbranched-3) neuron (implies (projecting-to Spinal cord descending projection))
from nucleus of solitary tract to Rexed Lamina VII of T1 via nucleus of solitary tract via medulla oblongata (Neural tissue of medulla) via C1 segment of cervical spinal cord via C2 segment of cervical spinal cord via C3 segment of cervical spinal cord via C4 segment of cervical spinal cord via C5 segment of cervical spinal cord via C6 segment of cervical spinal cord via C7 segment of cervical spinal cord via C8 segment of cervical spinal cord via T1 segment of thoracic spinal cord
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadd dendrite\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nreestablished forward connections to BOLEW-2 and BOLEW-3.\nadjusted terminal location to be Rexed lamina Vii of T1; demoted T1 to via.\nThis population needs to be reviewed - because https://sckan-partial-order.netlify.app/ has T1 as the axon terminal location; but not Rexed lamina Vii. all current these populations bolew-6 and it's forward connections, have a region(layer) pair. (T1 (rexed lamina VII of T1). which should we go with?\nAdded the region/layer origin. Before it was NTS only.\nThe decision is to utilize the "Spinal cord descending projection" phenotype instead of "Projection" in "Circuit Type".\nquestion RE forward connections.\nUpdated destination to be T1 (layer 7).\nNeed to be able to add: projection phenotype = spinal cord descending projection. \n \nhttps://github.com/MetaCell/sckan-composer/issues/281
rostral ventrolateral medulla to rexed lamina VII of T1 via C1-C8 and T1 spinal cord segments
A connection goes from rostral ventrolateral medulla to Rexed Lamina VII of T1 via rostral ventrolateral medulla via medulla oblongata (Neural tissue of medulla) via C1 segment of cervical spinal cord via C2 segment of cervical spinal cord via C3 segment of cervical spinal cord via C4 segment of cervical spinal cord via C5 segment of cervical spinal cord via C6 segment of cervical spinal cord via C7 segment of cervical spinal cord via C8 segment of cervical spinal cord via T1 segment of thoracic spinal cord. This spinal cord descending projection phenotype connection projects from the rostral ventrolateral medulla. It is described in Bolser-Lewis model of defensive breathing model.
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed. 14 Aug 2025: added medulla and T1 in partial order, changed axon terminal location to Rexed lamina VII of T1.
RVLM (with-axons-in (intersection-of-part-of bulb) C1 segment of cervical spinal cord C2 segment of cervical spinal cord C3 segment of cervical spinal cord C4 segment of cervical spinal cord C5 segment of cervical spinal cord C6 segment of cervical spinal cord C7 segment of cervical spinal cord C8 segment of cervical spinal cord T1 segment of thoracic spinal cord) (with-axon-presynaptic-element-in Rexed Lamina VII of T1) (projecting-onto ilxtr:neuron-type-bolew-unbranched-2 ilxtr:neuron-type-bolew-unbranched-3) neuron (implies (projecting-to Spinal cord descending projection))
from rostral ventrolateral medulla to Rexed Lamina VII of T1 via rostral ventrolateral medulla via medulla oblongata (Neural tissue of medulla) via C1 segment of cervical spinal cord via C2 segment of cervical spinal cord via C3 segment of cervical spinal cord via C4 segment of cervical spinal cord via C5 segment of cervical spinal cord via C6 segment of cervical spinal cord via C7 segment of cervical spinal cord via C8 segment of cervical spinal cord via T1 segment of thoracic spinal cord
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nfix missing dendrite\nmake neural tissue of medulla consistent with bolew 6 (ignoring for now the fact that this is over specified)\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nupdated T1 of thoracic spinal cord segment to via; rexed lamina VII of T1 as axon terminal location. re-establish forward connections with bolew- 2 and bolew-3 with their updated locations.\nThis population has been updated to match https://sckan-partial-order.netlify.app/; however it needs adjustment because Fahim's diagram has t1 as an axon terminal, and then rexed lamina VII of t1 (unspecified. We orignally modeled this as t1(rexed VII of T1). Update once we know which is correct for the round trip.\nadded the FCs as number 6 and number 1\nRemoved the unresolving link from provenance: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-7\nREGION REVIEW REQUESTED: added Lamina VII to T1 as it is specified in the drawing, but wasn't in the axioms from SCKAN.\nDECISION APPLIED: removed forward connections, per 6/6/2024 KCORE meeting, affirmed by Bernard that the drawing does not indicate that these cell populations are communicating directly.\nCheck forward connections.\nupdated destination to be T1 (Layer 7)\nNeeds projection phenotype = spinal cord descending projection phenotype
nodose ganglion with axon sensory terminal to aortic arch baroreceptors via vagus nerve via aortic arch depressor nerve with axon terminal in nucleus of solitary tract via vagus nerve
A connection goes from inferior vagus X ganglion to Aortic arch baroreceptors via vagus nerve via Aortic arch depressor nerve via arch of aorta (Wall of arch of aorta); from inferior vagus X ganglion to nucleus of solitary tract via vagus nerve via medulla oblongata (Neural tissue of medulla). This sensory connection projects from the inferior vagus X ganglion. It is described in Bolser-Lewis model of defensive breathing model.
14 Aug 2025: vagus nerve is both axon to PNS and axon
inferior vagus X ganglion (with-axon-in (intersection-of-part-of bulb)) (with-axon-presynaptic-element-in nucleus of solitary tract) (implies sensory neuron)
from inferior vagus X ganglion to Aortic arch baroreceptors via vagus nerve via Aortic arch depressor nerve via arch of aorta (Wall of arch of aorta) from inferior vagus X ganglion to nucleus of solitary tract via vagus nerve via medulla oblongata (Neural tissue of medulla)
remove axon in vagus nerve from partial order because it is redundant with axon to pns, because axon to pns implies axon in the current formalism, this avoids a confusing dangling duplicate in the partial order\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nupdated with regions/layers to match apinatomy & NPO using Fahim's tool- https://sckan-partial-order.netlify.app/\nremoved non-resolving from provenances: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-8\nIs there a better option for the distal projection of the vagus before it turns into the AADN?\nImpacted by the requirement that you specify a (ANS) phenotype for all populations. this is currently set to "not specified" ; when possible, remove this.
nodose ganglion with axon sensory terminal in laryngeal mechanoreceptors via superior laryngeal nerve and wall of larynx with axon terminal in the nucleus of solitary tract via vagus nerve
A connection goes from inferior vagus X ganglion to Laryngeal mechanoreceptors via vagus nerve via superior laryngeal nerve via larynx (Wall of larynx); from inferior vagus X ganglion to nucleus of solitary tract via vagus nerve via medulla oblongata (Neural tissue of medulla). This sensory connection projects from the inferior vagus X ganglion. It is described in Bolser-Lewis model of defensive breathing model.
14 Aug 2025: added vagus nerve as axon to PNS and axon.
from inferior vagus X ganglion to Laryngeal mechanoreceptors via vagus nerve via superior laryngeal nerve via larynx (Wall of larynx) from inferior vagus X ganglion to nucleus of solitary tract via vagus nerve via medulla oblongata (Neural tissue of medulla)
This should be reviewed. The axon and axon to pns use the same anatomy, vagus nerve. A better option would resolve the loop.\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nLOOP: vagus is both axon to PNS and axon.\nupdated this population to match Fahim's tool : https://sckan-partial-order.netlify.app/\nremoved unresolving ILX URI from provenance\nremoved non-resolving provenance: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-9\nThe region/layers for the axon terminal and sensory axon terminal were added.\nIs there a better term/choice for the vagus nerve prior to SLN? cervical trunk of vagus?\nimpacted by the requirement that all populations have an (ANS) phenotype set. this is a sensory population, so the "not specified" should be removed when possible.
nodose ganglion with axon sensory terminal to epiglottic mechanoreceptors via pharyngeal branch of glossopharyngeal nerve with axon terminals in nucleus of solitary tract via vagus nerve
A connection goes from inferior vagus X ganglion to Epiglottic mechanoreceptors via vagus nerve via Pharyngeal branch of glossopharyngeal nerve via epiglottis (mucosa of epiglottis); from inferior vagus X ganglion to nucleus of solitary tract via vagus nerve via medulla oblongata (Neural tissue of medulla). This sensory connection projects from the inferior vagus X ganglion. It is described in Bolser-Lewis model of defensive breathing model.
14 Aug 2025: vagus nerve is both axon and axon to pns.
from inferior vagus X ganglion to Epiglottic mechanoreceptors via vagus nerve via Pharyngeal branch of glossopharyngeal nerve via epiglottis (mucosa of epiglottis) from inferior vagus X ganglion to nucleus of solitary tract via vagus nerve via medulla oblongata (Neural tissue of medulla)
This could use another look - axon and axon to PNS use vagus nerve and are therefore colocated.\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nLOOP: vagus nerve is both axon to PNS and axon.\nupdated to match exactly what is in Fahim's representation in : https://sckan-partial-order.netlify.app/\nupdated A to B via C\nremoved non-resolving link from provenance: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-10\nNot sure if the distal trajectory travels via vagus *then* pharyngeal branch of glossopharyngeal nerve, or if it should be nodes ->glosspharyngeal nerve -> pharyngeal branch of glossopharyngeal. Please advise.\nImpacted by the requirement to specify a phenotype. currently set to "not specified" will need to update when this requirement is resolved.
petrosal ganglion with axon sensory terminal in wall of carotid body of common carotid artery via rami glomi carotici with axon terminal in the nucleus of solitary tract via glossopharyngeal nerve
A connection goes from inferior glossopharyngeal IX ganglion to carotid body via glossopharyngeal nerve via Rami glomi carotici via common carotid artery plus branches (wall of common carotid artery); from inferior glossopharyngeal IX ganglion to nucleus of solitary tract via glossopharyngeal nerve via medulla oblongata (Neural tissue of medulla). This sensory connection projects from the inferior glossopharyngeal IX ganglion. It is described in Bolser-Lewis model of defensive breathing model.
14 Aug 2025: updated glossopharyngeal to be both axon and axon to PNS.
inferior glossopharyngeal IX ganglion (with-axon-in (intersection-of-part-of bulb)) (with-axon-presynaptic-element-in nucleus of solitary tract) (implies sensory neuron)
from inferior glossopharyngeal IX ganglion to carotid body via glossopharyngeal nerve via Rami glomi carotici via common carotid artery plus branches (wall of common carotid artery) from inferior glossopharyngeal IX ganglion to nucleus of solitary tract via glossopharyngeal nerve via medulla oblongata (Neural tissue of medulla)
remove axon in glophan nerve from partial order because it is redundant with axon to pns, because axon to pns implies axon in the current formalism, this avoids a confusing dangling duplicate in the partial order\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nneed to review loop for glossphyarngeal nerve being both axon and axon to PNS.\nupdate to exactly match the modeling in Fahim's diagram. https://sckan-partial-order.netlify.app/\nremoved the non-resolving link from provenance: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-11\nConfirmed with Bernard that the via from petrosal ganglion to spinal cord is "glossopharyngeal nerve".\nUpdated the layer/regions.\nupdated to include region(layer) for wall of common carotid artery (carotid body)\nImpacted by requirement to set a (ANS) phenotype by Composer. update from "not specified" when possible.
ganglion inferius (nervus glossopharygeus)
ganglion inferius nervus glossopharyngei
glossopharyngeal nerve inferior ganglion
inferior ganglion of glossopharyngeal nerve
inferior glossopharyngeal ganglion of the glossopharyngeal (IX) nerve
petrosal ganglion with axon sensory terminal in carotid sinus of internal carotid artery via carotid sinus nerve (Hering's nerve) with axon terminal in the nucleus of solitary tract via glossopharyngeal nerve
A connection goes from inferior glossopharyngeal IX ganglion to nucleus of solitary tract via glossopharyngeal nerve via medulla oblongata (Neural tissue of medulla); from inferior glossopharyngeal IX ganglion to carotid sinus via glossopharyngeal nerve via carotid sinus nerve via internal carotid artery (wall of internal carotid artery). This sensory connection projects from the inferior glossopharyngeal IX ganglion. It is described in Bolser-Lewis model of defensive breathing model.
from inferior glossopharyngeal IX ganglion to nucleus of solitary tract via glossopharyngeal nerve via medulla oblongata (Neural tissue of medulla) from inferior glossopharyngeal IX ganglion to carotid sinus via glossopharyngeal nerve via carotid sinus nerve via internal carotid artery (wall of internal carotid artery)
remove axon in vagus nerve from partial order because it is redundant with axon to pns, because axon to pns implies axon in the current formalism, this avoids a confusing dangling duplicate in the partial order\nadded zenodo; added stephen lewis & don bolser as experts, removed github\nthis population now has a loop (glossopharyngeal both axon and axon to PNS)\nupdated to exactly match diagram in Fahim's tool: https://sckan-partial-order.netlify.app/\nremoved unresolving ILX URI from provenance\nRemoved non-resolving link from provenance: http://uri.interlex.org/tgbugs/uris/readable/neuron-type-bolew-unbranched-12\nConfirmed with Bernard that the via from petrosal ganglion to spinal cord is "glossopharyngeal nerve".\nREVIEW REQUEST: should the central projection from petrosal to NTS have a named via (glossopharyngeal nerve for example?)\nAdjusted routing so that petrosal to carotid sinus via carotid sinus nerve; while central projection from petrosal to NTS is direct. (not sure if this should be the glossopharyngeal nerve at this point tho?)\nneed to remove phenotype = not specified.
carotid branch of glossopharyngeal nerve
ramus sinus carotici nervi glossopharyngei
ramus sinus carotici nervus glossopharyngei
rexed lamina VII of T1-L1 to adrenal gland (adrenal medulla) via white matter of T1-L1 via ventral root of T1-L1 via white communicating ramus of T1-L1 via gray communicating ramus of T1-L1 thoracic splanchnic nerve
A sympathetic pre-ganglionic connection goes from Thirteenth thoracic spinal cord segment (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via Thirteenth thoracic spinal cord segment (white matter of spinal cord) via ventral root of the thirteenth thoracic spinal cord segment via white communicating ramus of thirteenth thoracic spinal nerve via Thirteenth thoracic ganglion via gray communicating ramus of thirteenth thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex); from T2 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T2 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the second thoracic spinal cord segment via white communicating ramus of second thoracic spinal nerve via Second thoracic ganglion via gray communicating ramus of second thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex); from T10 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T10 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the tenth thoracic spinal cord segment via white communicating ramus of tenth thoracic spinal nerve via Tenth thoracic ganglion via gray communicating ramus of tenth thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex); from T7 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T7 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the seventh thoracic spinal cord segment via white communicating ramus of seventh thoracic spinal nerve via Seventh thoracic ganglion via gray communicating ramus of seventh thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex); from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion via gray communicating ramus of first lumbar nerve via splanchnic nerve via adrenal gland (adrenal cortex); from T4 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T4 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the fourth thoracic spinal cord segment via white communicating ramus of fourth thoracic spinal nerve via Fourth thoracic ganglion via gray communicating ramus of the fourth thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex); from T9 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T9 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the ninth thoracic spinal cord segment via white communicating ramus of ninth thoracic spinal nerve via Ninth thoracic ganglion via gray communicating ramus of ninth thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex); from T3 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T3 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the third thoracic spinal cord segment via white communicating ramus of third thoracic spinal nerve via Third thoracic ganglion via gray communicating ramus of the third thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex); from T1 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T1 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the first thoracic spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via gray communicating ramus of the first thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex); from T6 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T6 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the sixth thoracic spinal cord segment via white communicating ramus of sixth thoracic spinal nerve via Sixth thoracic ganglion via gray communicating ramus of sixth thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex); from T12 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T12 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the twelveth thoracic spinal cord segment via white communicating ramus of twelfth thoracic spinal nerve via Twelfth thoracic ganglion via gray communicating ramus of twelfth thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex); from T5 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T5 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the fifth thoracic spinal cord segment via white communicating ramus of fifth thoracic spinal nerve via Fifth thoracic ganglion via gray communicating ramus of the fifth thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex); from T11 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T11 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the eleventh thoracic spinal cord segment via white communicating ramus of eleventh thoracic spinal nerve via Eleventh thoracic ganglion via gray communicating ramus of eleventh thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex); from T8 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T8 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the eighth thoracic spinal cord segment via white communicating ramus of eighth thoracic spinal nerve via Eighth thoracic ganglion via gray communicating ramus of eighth thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex). This connection projects from the Thirteenth thoracic spinal cord segment (lamina VII of gray matter of spinal cord), L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord), T1 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord), T5 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord), T6 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord), T8 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord), T2 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord), T4 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord), T10 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord), T12 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord), T7 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord), T3 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord), T11 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) and T9 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord). It is described in SAWG model of bronchomotor control model.
29 Aug: replaced thoracic splanchnic nerve with splanchnic nerve to align with ApiNATOMY model.
(intersection-of-part-of L1 segment of lumbar spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T1 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T10 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T11 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T12 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T2 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T3 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T4 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T5 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T6 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T7 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T8 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T9 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of lamina VII of gray matter of spinal cord T13 segment of thoracic spinal cord) (with-axons-in (intersection-of-part-of adrenal cortex adrenal gland) (intersection-of-part-of white matter of spinal cord L1 segment of lumbar spinal cord) (intersection-of-part-of white matter of spinal cord T1 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T10 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T11 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T12 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T13 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T2 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T3 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T4 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T5 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T6 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T7 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T8 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T9 segment of thoracic spinal cord) L1 sympathetic chain ganglion T1 sympathetic chain ganglion T10 sympathetic chain ganglion T11 sympathetic chain ganglion T12 sympathetic chain ganglion T13 sympathetic chain ganglion T2 sympathetic chain ganglion T3 sympathetic chain ganglion T4 sympathetic chain ganglion T5 sympathetic chain ganglion T6 sympathetic chain ganglion T7 sympathetic chain ganglion T8 sympathetic chain ganglion T9 sympathetic chain ganglion gray communicating ramus of eighth thoracic nerve gray communicating ramus of eleventh thoracic nerve gray communicating ramus of first lumbar nerve gray communicating ramus of ninth thoracic nerve gray communicating ramus of second thoracic nerve gray communicating ramus of seventh thoracic nerve gray communicating ramus of sixth thoracic nerve gray communicating ramus of tenth thoracic nerve gray communicating ramus of the fifth thoracic nerve gray communicating ramus of the first thoracic nerve gray communicating ramus of the fourth thoracic nerve gray communicating ramus of the third thoracic nerve gray communicating ramus of thirteenth thoracic nerve gray communicating ramus of twelfth thoracic nerve splanchnic nerve ventral root of the eighth thoracic spinal cord segment ventral root of the eleventh thoracic spinal cord segment ventral root of the fifth thoracic spinal cord segment ventral root of the first lumbar spinal cord segment ventral root of the first thoracic spinal cord segment ventral root of the fourth thoracic spinal cord segment ventral root of the ninth thoracic spinal cord segment ventral root of the second thoracic spinal cord segment ventral root of the seventh thoracic spinal cord segment ventral root of the sixth thoracic spinal cord segment ventral root of the tenth thoracic spinal cord segment ventral root of the third thoracic spinal cord segment ventral root of the thirteenth thoracic spinal cord segment ventral root of the twelveth thoracic spinal cord segment white communicating ramus of eighth thoracic spinal nerve white communicating ramus of eleventh thoracic spinal nerve white communicating ramus of fifth thoracic spinal nerve white communicating ramus of first lumbar spinal nerve white communicating ramus of first thoracic spinal nerve white communicating ramus of fourth thoracic spinal nerve white communicating ramus of ninth thoracic spinal nerve white communicating ramus of second thoracic spinal nerve white communicating ramus of seventh thoracic spinal nerve white communicating ramus of sixth thoracic spinal nerve white communicating ramus of tenth thoracic spinal nerve white communicating ramus of third thoracic spinal nerve white communicating ramus of thirteenth thoracic spinal nerve white communicating ramus of twelfth thoracic spinal nerve) (with-axon-presynaptic-element-in (intersection-of-part-of adrenal medulla adrenal gland)) neuron (implies Sympathetic Pre-Ganglionic)
from Thirteenth thoracic spinal cord segment (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via Thirteenth thoracic spinal cord segment (white matter of spinal cord) via ventral root of the thirteenth thoracic spinal cord segment via white communicating ramus of thirteenth thoracic spinal nerve via Thirteenth thoracic ganglion via gray communicating ramus of thirteenth thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex) from T2 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T2 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the second thoracic spinal cord segment via white communicating ramus of second thoracic spinal nerve via Second thoracic ganglion via gray communicating ramus of second thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex) from T10 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T10 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the tenth thoracic spinal cord segment via white communicating ramus of tenth thoracic spinal nerve via Tenth thoracic ganglion via gray communicating ramus of tenth thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex) from T7 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T7 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the seventh thoracic spinal cord segment via white communicating ramus of seventh thoracic spinal nerve via Seventh thoracic ganglion via gray communicating ramus of seventh thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex) from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion via gray communicating ramus of first lumbar nerve via splanchnic nerve via adrenal gland (adrenal cortex) from T4 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T4 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the fourth thoracic spinal cord segment via white communicating ramus of fourth thoracic spinal nerve via Fourth thoracic ganglion via gray communicating ramus of the fourth thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex) from T9 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T9 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the ninth thoracic spinal cord segment via white communicating ramus of ninth thoracic spinal nerve via Ninth thoracic ganglion via gray communicating ramus of ninth thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex) from T3 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T3 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the third thoracic spinal cord segment via white communicating ramus of third thoracic spinal nerve via Third thoracic ganglion via gray communicating ramus of the third thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex) from T1 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T1 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the first thoracic spinal cord segment via white communicating ramus of first thoracic spinal nerve via T1 sympathetic ganglion via gray communicating ramus of the first thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex) from T6 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T6 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the sixth thoracic spinal cord segment via white communicating ramus of sixth thoracic spinal nerve via Sixth thoracic ganglion via gray communicating ramus of sixth thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex) from T12 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T12 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the twelveth thoracic spinal cord segment via white communicating ramus of twelfth thoracic spinal nerve via Twelfth thoracic ganglion via gray communicating ramus of twelfth thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex) from T5 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T5 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the fifth thoracic spinal cord segment via white communicating ramus of fifth thoracic spinal nerve via Fifth thoracic ganglion via gray communicating ramus of the fifth thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex) from T11 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T11 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the eleventh thoracic spinal cord segment via white communicating ramus of eleventh thoracic spinal nerve via Eleventh thoracic ganglion via gray communicating ramus of eleventh thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex) from T8 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to adrenal gland (adrenal medulla) via T8 segment of thoracic spinal cord (white matter of spinal cord) via ventral root of the eighth thoracic spinal cord segment via white communicating ramus of eighth thoracic spinal nerve via Eighth thoracic ganglion via gray communicating ramus of eighth thoracic nerve via splanchnic nerve via adrenal gland (adrenal cortex)
connection to T12 gray ramus was missing in partial order\nadded zenodo; added don bolser as expert consultant, removed github\nRoundTrip note: ApiNATOMY was using a duplicate identifier for T12 grey communicating ramus ; T2 grey communicating ramus was swapped from Composer becuase that was also a duplicate identifier, but a newer one. Removed github link; added zenodo ref instead.\nI have swapped out thoracic splanchnic nerve (http://purl.obolibrary.org/obo/UBERON_0018679) for splanchnic nerve as requested. UBERON:0003715 in order to match ApiNATOMY as Fahim requested. \nTBD if thoracic splanchnic should be the preferred term tho, once round trip is complete?\nUPDATE: Please ignore the previous note. For bromo-1, the axon located in thoracic splanchnic nerve (UBERON:0018679) before the adrenal gland (adrenal cortex) needed to be changed to splanchnic nerve (UBERON:0003715) just to conform with the ApINATOMY; But the splanchnic nerve could not be found in composer. (Augist 14, 2025)\nFor bromo-1, the axon located in the thoracic splanchnic nerve (UBERON:0018679) before the adrenal gland (adrenal cortex) is changed to splenchnic nerve (UBERON:0003715) just to conform with the ApINATOMY for the Composer-SCKAN round trip. But this update makes the axon location less precise. (August 14, 2025)\nDo these connections actually go through the sympathetic ganglion? looks like it's just ventral roots to grey/white communicating rami
nucleus ambiguus to bronchiole parasympathetic ganglia or bronchus parasympathetic ganglia or terminal bronchiole parasympathetic ganglia or trachea parasympathetic ganglia via medulla oblongata (neural tissue) via vagus nerve via bronchiole (Wall of bronchiole) or bronchus (Wall of bronchus) or terminal bronchiole (Wall of terminal bronchiole) or trachea (Wall of trachea)
A parasympathetic pre-ganglionic connection goes from nucleus ambiguus to terminal bronchiole parasympathetic ganglia via medulla oblongata (neural tissue) via vagus nerve via terminal bronchiole (Wall of terminal bronchiole); from nucleus ambiguus to trachea parasympathetic ganglia via medulla oblongata (neural tissue) via vagus nerve via trachea (Wall of trachea); from nucleus ambiguus to bronchiole parasympathetic ganglia via medulla oblongata (neural tissue) via vagus nerve via bronchiole (Wall of bronchiole); from nucleus ambiguus to bronchus parasympathetic ganglia via medulla oblongata (neural tissue) via vagus nerve via bronchus (Wall of bronchus). This connection projects from the nucleus ambiguus. It is described in SAWG model of bronchomotor control model.
Amb (with-axons-in (intersection-of-part-of bronchiole Wall of bronchiole) (intersection-of-part-of bronchus Wall of bronchus) (intersection-of-part-of bulb) (intersection-of-part-of terminal bronchiole Wall of terminal bronchiole) (intersection-of-part-of trachea Wall of trachea) 10n) (with-axon-presynaptic-element-in bronchiole parasympathetic ganglia bronchus parasympathetic ganglia terminal bronchiole parasympathetic ganglia trachea parasympathetic ganglia) (projecting-onto ilxtr:neuron-type-bromo-3 ilxtr:neuron-type-bromo-4 ilxtr:neuron-type-bromo-5 ilxtr:neuron-type-bromo-6) neuron (implies Parasympathetic Pre-Ganglionic)
from nucleus ambiguus to terminal bronchiole parasympathetic ganglia via medulla oblongata (neural tissue) via vagus nerve via terminal bronchiole (Wall of terminal bronchiole) from nucleus ambiguus to trachea parasympathetic ganglia via medulla oblongata (neural tissue) via vagus nerve via trachea (Wall of trachea) from nucleus ambiguus to bronchiole parasympathetic ganglia via medulla oblongata (neural tissue) via vagus nerve via bronchiole (Wall of bronchiole) from nucleus ambiguus to bronchus parasympathetic ganglia via medulla oblongata (neural tissue) via vagus nerve via bronchus (Wall of bronchus)
added zenodo; added don bolser as expert consultant, removed github\nUpdated for Composer-SCKAN round-trip. (August 14, 2025)
trachea parasympathetic ganglia to trachea (Wall of trachea)
A parasympathetic post-ganglionic connection goes from trachea parasympathetic ganglia to trachea (Wall of trachea). This connection projects from the trachea parasympathetic ganglia. It is described in SAWG model of bronchomotor control model.
trachea parasympathetic ganglia (with-axon-presynaptic-element-in (intersection-of-part-of trachea Wall of trachea)) neuron (implies Parasympathetic Post-Ganglionic)
from trachea parasympathetic ganglia to trachea (Wall of trachea)
added zenodo; added don bolser as expert consultant, removed github\nBernard said that 3-6 populations are all irrigating the wall of each structure.
bronchus parasympathetic ganglia to bronchus (Wall of bronchus)
A parasympathetic post-ganglionic connection goes from bronchus parasympathetic ganglia to bronchus (Wall of bronchus). This connection projects from the bronchus parasympathetic ganglia.
bronchus parasympathetic ganglia (with-axon-presynaptic-element-in (intersection-of-part-of bronchus Wall of bronchus)) neuron (implies Parasympathetic Post-Ganglionic)
from bronchus parasympathetic ganglia to bronchus (Wall of bronchus)
added zenodo; added don bolser as expert consultant, removed github
bronchiole parasympathetic ganglia to bronchiole (Wall of bronchiole)
A parasympathetic post-ganglionic connection goes from bronchiole parasympathetic ganglia to bronchiole (Wall of bronchiole). This connection projects from the bronchiole parasympathetic ganglia. It is described in SAWG model of bronchomotor control model.
bronchiole parasympathetic ganglia (with-axon-presynaptic-element-in (intersection-of-part-of bronchiole Wall of bronchiole)) neuron (implies Parasympathetic Post-Ganglionic)
from bronchiole parasympathetic ganglia to bronchiole (Wall of bronchiole)
terminal bronchiole parasympathetic ganglia to terminal bronchiole (Wall of terminal bronchiole)
A parasympathetic post-ganglionic connection goes from terminal bronchiole parasympathetic ganglia to terminal bronchiole (Wall of terminal bronchiole). This connection projects from the terminal bronchiole parasympathetic ganglia. It is described in SAWG model of bronchomotor control model.
terminal bronchiole parasympathetic ganglia (with-axon-presynaptic-element-in (intersection-of-part-of terminal bronchiole Wall of terminal bronchiole)) neuron (implies Parasympathetic Post-Ganglionic)
from terminal bronchiole parasympathetic ganglia to terminal bronchiole (Wall of terminal bronchiole)
pelvic ganglion to epithelium of bladder fundus or epithelium of bladder neck or smooth muscle of bladder fundus or smooth muscle of bladder neck via bladder nerve
In rat, the parasympathetic post-ganglionic connection goes from pelvic ganglion to neck of urinary bladder (epithelium) or neck of urinary bladder (smooth muscle tissue) via bladder nerve via neck of urinary bladder (connective tissue) via neck of urinary bladder (smooth muscle tissue); from pelvic ganglion to fundus of urinary bladder (epithelium) or fundus of urinary bladder (smooth muscle tissue) via bladder nerve via fundus of urinary bladder (connective tissue) via fundus of urinary bladder (smooth muscle tissue). This connection projects from the pelvic ganglion. It is described in Keast model of bladder innervation model.
15 Aug 2025: changed dome of bladder to fundus of bladder.
pelvic ganglion (with-axons-in (intersection-of-part-of connective tissue fundus of urinary bladder) (intersection-of-part-of neck of urinary bladder connective tissue) bladder nerve) (with-axon-presynaptic-element-in (intersection-of-part-of epithelium fundus of urinary bladder) (intersection-of-part-of epithelium neck of urinary bladder) (intersection-of-part-of smooth muscle tissue fundus of urinary bladder) (intersection-of-part-of smooth muscle tissue neck of urinary bladder)) neuron (implies Rattus norvegicus Parasympathetic Post-Ganglionic)
from pelvic ganglion to neck of urinary bladder (epithelium) or neck of urinary bladder (smooth muscle tissue) via bladder nerve via neck of urinary bladder (connective tissue) via neck of urinary bladder (smooth muscle tissue) from pelvic ganglion to fundus of urinary bladder (epithelium) or fundus of urinary bladder (smooth muscle tissue) via bladder nerve via fundus of urinary bladder (connective tissue) via fundus of urinary bladder (smooth muscle tissue)
updated partial order to match apinat partial order which has the epithelium terminal connected to an axon in the sooth muscle layer\nUpdated path to conform exactly with diagram presented in Fahim's tool: https://sckan-partial-order.netlify.app/\nCannot add Bladder Dome. reported in https://github.com/MetaCell/sckan-composer/issues/279#issue-2328296076\nupdated ANS phenotype\n@ilias, wondering what is the best way to represent the species - common name (human) or species (homo sapien). Should we list both? one?
textus muscularis levis; textus muscularis nonstriatus
pelvic ganglion to smooth muscle of the bladder fundus or smooth muscle of bladder neck via bladder nerve
In rat, the sympathetic post-ganglionic connection goes from pelvic ganglion to neck of urinary bladder (smooth muscle tissue) via bladder nerve via neck of urinary bladder (connective tissue); from pelvic ganglion to fundus of urinary bladder (smooth muscle tissue) via bladder nerve via fundus of urinary bladder (connective tissue). This connection projects from the pelvic ganglion. It is described in Keast model of bladder innervation model.
pelvic ganglion (with-axons-in (intersection-of-part-of connective tissue fundus of urinary bladder) (intersection-of-part-of neck of urinary bladder connective tissue) bladder nerve) (with-axon-presynaptic-element-in (intersection-of-part-of smooth muscle tissue fundus of urinary bladder) (intersection-of-part-of smooth muscle tissue neck of urinary bladder)) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from pelvic ganglion to neck of urinary bladder (smooth muscle tissue) via bladder nerve via neck of urinary bladder (connective tissue) from pelvic ganglion to fundus of urinary bladder (smooth muscle tissue) via bladder nerve via fundus of urinary bladder (connective tissue)
updated path to exactly match diagram in Fahim's tool: https://sckan-partial-order.netlify.app/\nAlso - note these references are malformed due to composer bug.\nNot sure why here we keep the region (layer) configuration while for the structures in the telencephalon and diencephalon we did not.\nCitation question - all 27 or just what's provided here?\nregion (layer) bug with dome of bladder has been resolved.\nCannot access Dome of the Bladder ILX region (although anatomical entity with this ontology uri already exists) \nhttps://github.com/MetaCell/sckan-composer/issues/278\nupdated ANS phenotype
inferior mesenteric ganglion to smooth muscle of fundus of the bladder or smooth muscle of neck of urinary bladder via hypogastric nerve via pelvic ganglion via bladder nerve
In rat, the sympathetic post-ganglionic connection goes from inferior mesenteric ganglion to fundus of urinary bladder (smooth muscle tissue) via hypogastric nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue); from inferior mesenteric ganglion to neck of urinary bladder (smooth muscle tissue) via hypogastric nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue). This connection projects from the inferior mesenteric ganglion. It is described in Keast model of bladder innervation model.
15 Aug 2025: replaced dome of urinary bladder with fundus of urinary bladder entities. Added connective tissue as axon paths.
inferior mesenteric ganglion (with-axons-in (intersection-of-part-of connective tissue fundus of urinary bladder) (intersection-of-part-of neck of urinary bladder connective tissue) bladder nerve hypogastric nerve pelvic ganglion) (with-axon-presynaptic-element-in (intersection-of-part-of smooth muscle tissue fundus of urinary bladder) (intersection-of-part-of smooth muscle tissue neck of urinary bladder)) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from inferior mesenteric ganglion to fundus of urinary bladder (smooth muscle tissue) via hypogastric nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) from inferior mesenteric ganglion to neck of urinary bladder (smooth muscle tissue) via hypogastric nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue)
[note composer bug with the literature references]\nupdated the path to match exactly depicted in Fahim's tool: https://sckan-partial-order.netlify.app/\nI don't recall that all the keast bladder neurons were in th rat. If that's the case then the pelvic ganglion should be major pelvic ganglion which is the equivalent structure in rodents. Pelvic ganglion is called in humans.\nCitation question -all 27? or just what's listed here?
T12-L6 sympathetic chain ganglia to arteriole in connective tissue of bladder dome or arteriole in connective tissue of bladder neck via interganglionic segments of L6-S1 via grey communicating rami of L6-S1 via pelvic splanchnic nerve via pelvic ganglion via bladder nerve
In rat, the sympathetic post-ganglionic connection goes from fifth lumbar sympathetic ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue); from Second lumbar ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue); from Fourth lumbar ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue); from Twelfth thoracic ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via T12 - T13 interganglionic segment of the sympathetic chain via Thirteenth thoracic ganglion via T13 - L1 interganglionic segment of the sympathetic chain via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue); from Third lumbar ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue); from Third lumbar ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue); from Second lumbar ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue); from First lumbar ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue); from Second lumbar ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue); from Twelfth thoracic ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via T12 - T13 interganglionic segment of the sympathetic chain via Thirteenth thoracic ganglion via T13 - L1 interganglionic segment of the sympathetic chain via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue); from fifth lumbar sympathetic ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue); from Thirteenth thoracic ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via T13 - L1 interganglionic segment of the sympathetic chain via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue); from First lumbar ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue); from Thirteenth thoracic ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via T13 - L1 interganglionic segment of the sympathetic chain via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue); from First lumbar ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue); from Fourth lumbar ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue); from Second lumbar ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue); from Twelfth thoracic ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via T12 - T13 interganglionic segment of the sympathetic chain via Thirteenth thoracic ganglion via T13 - L1 interganglionic segment of the sympathetic chain via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue); from fifth lumbar sympathetic ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue); from sixth lumbar sympathetic ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue); from Thirteenth thoracic ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via T13 - L1 interganglionic segment of the sympathetic chain via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue); from sixth lumbar sympathetic ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue); from First lumbar ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue); from Thirteenth thoracic ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via T13 - L1 interganglionic segment of the sympathetic chain via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue); from sixth lumbar sympathetic ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue); from fifth lumbar sympathetic ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue); from Fourth lumbar ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue); from Fourth lumbar ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue); from Twelfth thoracic ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via T12 - T13 interganglionic segment of the sympathetic chain via Thirteenth thoracic ganglion via T13 - L1 interganglionic segment of the sympathetic chain via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue); from Third lumbar ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue); from sixth lumbar sympathetic ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue); from Third lumbar ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue). This connection projects from the Thirteenth thoracic ganglion, Fourth lumbar ganglion, fifth lumbar sympathetic ganglion, First lumbar ganglion, Second lumbar ganglion, sixth lumbar sympathetic ganglion, Third lumbar ganglion and Twelfth thoracic ganglion. It is described in Keast model of bladder innervation model.
15 Aug 2025: Added fundus (connective tissue) and neck (connective tissue) to the axon path
L1 sympathetic chain ganglion L2 sympathetic chain ganglion L3 sympathetic chain ganglion L4 sympathetic chain ganglion L5 sympathetic chain ganglion L6 sympathetic chain ganglion T12 sympathetic chain ganglion T13 sympathetic chain ganglion (with-axons-in (intersection-of-part-of connective tissue fundus of urinary bladder) (intersection-of-part-of neck of urinary bladder connective tissue) L1 - L2 interganglionic segment L1 sympathetic chain ganglion L2 - L3 interganglionic segment L2 sympathetic chain ganglion L3 - L4 interganglionic segment L3 sympathetic chain ganglion L4 - L5 interganglionic segment L4 sympathetic chain ganglion L5 - L6 interganglionic segment L5 sympathetic chain ganglion L6 - S1 interganglionic segment of the sympathetic chain L6 sympathetic chain ganglion S1 sympathetic chain ganglion T12 - T13 interganglionic segment of the sympathetic chain T13 - L1 interganglionic segment of the sympathetic chain T13 sympathetic chain ganglion bladder nerve gray communicating ramus of first sacral nerve gray communicating ramus of sixth lumbar nerve pelvic ganglion pelvic splanchnic nerve) (with-axon-presynaptic-element-in (intersection-of-part-of wall of blood vessel Arteriole in connective tissue of bladder dome) (intersection-of-part-of wall of blood vessel Arteriole in connective tissue of bladder neck)) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from fifth lumbar sympathetic ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) from Second lumbar ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue) from Fourth lumbar ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) from Twelfth thoracic ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via T12 - T13 interganglionic segment of the sympathetic chain via Thirteenth thoracic ganglion via T13 - L1 interganglionic segment of the sympathetic chain via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) from Third lumbar ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) from Third lumbar ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) from Second lumbar ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) from First lumbar ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue) from Second lumbar ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue) from Twelfth thoracic ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via T12 - T13 interganglionic segment of the sympathetic chain via Thirteenth thoracic ganglion via T13 - L1 interganglionic segment of the sympathetic chain via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue) from fifth lumbar sympathetic ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue) from Thirteenth thoracic ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via T13 - L1 interganglionic segment of the sympathetic chain via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue) from First lumbar ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue) from Thirteenth thoracic ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via T13 - L1 interganglionic segment of the sympathetic chain via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue) from First lumbar ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) from Fourth lumbar ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue) from Second lumbar ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) from Twelfth thoracic ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via T12 - T13 interganglionic segment of the sympathetic chain via Thirteenth thoracic ganglion via T13 - L1 interganglionic segment of the sympathetic chain via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) from fifth lumbar sympathetic ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) from sixth lumbar sympathetic ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue) from Thirteenth thoracic ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via T13 - L1 interganglionic segment of the sympathetic chain via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) from sixth lumbar sympathetic ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue) from First lumbar ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) from Thirteenth thoracic ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via T13 - L1 interganglionic segment of the sympathetic chain via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) from sixth lumbar sympathetic ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) from fifth lumbar sympathetic ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue) from Fourth lumbar ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue) from Fourth lumbar ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) from Twelfth thoracic ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via T12 - T13 interganglionic segment of the sympathetic chain via Thirteenth thoracic ganglion via T13 - L1 interganglionic segment of the sympathetic chain via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue) from Third lumbar ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via L6 - S1 interganglionic segment of the sympathetic chain via First sacral ganglion via gray communicating ramus of first sacral nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue) from sixth lumbar sympathetic ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) from Third lumbar ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion via gray communicating ramus of sixth lumbar nerve via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue)
modelling on this one is still wacky - loop in both this diagram and in Fahim's rendering on https://sckan-partial-order.netlify.app/\nAs discussed on 5/13/25; we could investigate further simplifying this population to have the vias become the t12-t13 interganglionic segment + t13 ganglion + T13-L1 interganglionic segment + lumbar sympathetic trunk + L6-S1 interganglionic + S1 ganglion... but the way we have it modeled now is discrete and explicit for the origins and direction.\nmade an attempt here to get this corrected. need to review with ilias - should all these go through the respective ganglia (like we did in aacar-5?) that's what i'm thinking. .. .\nShould this population include the L6 sympathetic chain?\nremoved S1 ganglion, as there's no cell body designated in the diagram
L6-S1 spinal cord (rexed laminae VII) to pelvic ganglion via white matter of L6-S1 via ventral root of L6-S1 via pelvic splanchnic nerve
In rat, the parasympathetic pre-ganglionic connection goes from S1 segment of sacral spinal cord (lamina VII of gray matter of spinal cord) to pelvic ganglion via S1 segment of sacral spinal cord (white matter of spinal cord) via ventral root of the first sacral spinal cord segment via pelvic splanchnic nerve; from Sixth lumbar spinal cord segment (lamina VII of gray matter of spinal cord) to pelvic ganglion via Sixth lumbar spinal cord segment (white matter of spinal cord) via ventral root of the sixth lumbar spinal cord segment via pelvic splanchnic nerve. This connection projects from the L6 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) and S1 segment of sacral spinal cord (lamina VII of gray matter of spinal cord). It is described in Keast model of bladder innervation model.
(intersection-of-part-of L6) (intersection-of-part-of S1 segment of sacral spinal cord lamina VII of gray matter of spinal cord) (with-axons-in (intersection-of-part-of L6) (intersection-of-part-of white matter of spinal cord S1 segment of sacral spinal cord) pelvic splanchnic nerve ventral root of the first sacral spinal cord segment ventral root of the sixth lumbar spinal cord segment) (with-axon-presynaptic-element-in pelvic ganglion) (projecting-onto ilxtr:neuron-type-keast-1) neuron (implies Rattus norvegicus Parasympathetic Pre-Ganglionic)
from S1 segment of sacral spinal cord (lamina VII of gray matter of spinal cord) to pelvic ganglion via S1 segment of sacral spinal cord (white matter of spinal cord) via ventral root of the first sacral spinal cord segment via pelvic splanchnic nerve from Sixth lumbar spinal cord segment (lamina VII of gray matter of spinal cord) to pelvic ganglion via Sixth lumbar spinal cord segment (white matter of spinal cord) via ventral root of the sixth lumbar spinal cord segment via pelvic splanchnic nerve
no changes needed to make it exactly match the diagram in Fahim's tool https://sckan-partial-order.netlify.app/ . wohoo!\nLet's use this as a study case for the predisposed view of the population diagram that is so confusing.\nupdated ANS phenotype.
L1-L2 spinal cord segment (rexed laminae VII) to pelvic ganglion via white matter of L1-L2 via ventral root of L1-L2 via white communicating ramus of L1-L2 via grey communicating ramus of L1-L2 via lumbar splanchnic nerve via inferior mesenteric ganglion via hypogastric nerve
In rat, the sympathetic pre-ganglionic connection goes from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to pelvic ganglion via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion via gray communicating ramus of first lumbar nerve via lumbar splanchnic nerve via inferior mesenteric ganglion via hypogastric nerve; from L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to pelvic ganglion via L2 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the second lumbar spinal cord segment via white communicating ramus of second lumbar spinal nerve via Second lumbar ganglion via gray communicating ramus of second lumbar nerve via lumbar splanchnic nerve via inferior mesenteric ganglion via hypogastric nerve. This connection projects from the L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) and L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord). It is described in Keast model of bladder innervation model.
14 Aug 2025: added L1 and L2 ganglia as vias
(intersection-of-part-of L1 segment of lumbar spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of L2 segment of lumbar spinal cord lamina VII of gray matter of spinal cord) (with-axons-in (intersection-of-part-of white matter of spinal cord L1 segment of lumbar spinal cord) (intersection-of-part-of white matter of spinal cord L2 segment of lumbar spinal cord) L1 sympathetic chain ganglion L2 sympathetic chain ganglion gray communicating ramus of first lumbar nerve gray communicating ramus of second lumbar nerve hypogastric nerve inferior mesenteric ganglion lumbar splanchnic nerve ventral root of the first lumbar spinal cord segment ventral root of the second lumbar spinal cord segment white communicating ramus of first lumbar spinal nerve white communicating ramus of second lumbar spinal nerve) (with-axon-presynaptic-element-in pelvic ganglion) (projecting-onto ilxtr:neuron-type-keast-2) neuron (implies Rattus norvegicus Sympathetic Pre-Ganglionic)
from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to pelvic ganglion via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion via gray communicating ramus of first lumbar nerve via lumbar splanchnic nerve via inferior mesenteric ganglion via hypogastric nerve from L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to pelvic ganglion via L2 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the second lumbar spinal cord segment via white communicating ramus of second lumbar spinal nerve via Second lumbar ganglion via gray communicating ramus of second lumbar nerve via lumbar splanchnic nerve via inferior mesenteric ganglion via hypogastric nerve
updated to exactly match the diagram in Fahim's tool : https://sckan-partial-order.netlify.app/ ; added L1 and L2 ganglia as vias.\ncitations question - All 27? or the ones reported here?\nNeed to know when fiber mixing between segments should be designated? Currently, this population matches what is drawn, but I believe that we've discussed that fibers could enter/exit communicating rami of adjacent segments. Also, I don't how this population diagram is laid out with all vias arranged in an alternating lines, rather than setting up parallel "layers".\nWhy is the automated description of this population so truncated? the vias and destinations appear in the proofing tab....
L1-L2 spinal cord segment (rexed laminae VII) to inferior mesenteric ganglion via white matter of L1-L2 via ventral root of L1-L2 via white communicating ramus of L1-L2 via grey communicating ramus of L1-L2 via lumbar splanchnic nerve
In rat, the sympathetic pre-ganglionic connection goes from L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to inferior mesenteric ganglion via L2 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the second lumbar spinal cord segment via white communicating ramus of second lumbar spinal nerve via Second lumbar ganglion via gray communicating ramus of second lumbar nerve via lumbar splanchnic nerve; from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to inferior mesenteric ganglion via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion via gray communicating ramus of first lumbar nerve via lumbar splanchnic nerve. This connection projects from the L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) and L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord). It is described in Keast model of bladder innervation model.
(intersection-of-part-of L1 segment of lumbar spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of L2 segment of lumbar spinal cord lamina VII of gray matter of spinal cord) (with-axons-in (intersection-of-part-of white matter of spinal cord L1 segment of lumbar spinal cord) (intersection-of-part-of white matter of spinal cord L2 segment of lumbar spinal cord) L1 sympathetic chain ganglion L2 sympathetic chain ganglion gray communicating ramus of first lumbar nerve gray communicating ramus of second lumbar nerve lumbar splanchnic nerve ventral root of the first lumbar spinal cord segment ventral root of the second lumbar spinal cord segment white communicating ramus of first lumbar spinal nerve white communicating ramus of second lumbar spinal nerve) (with-axon-presynaptic-element-in inferior mesenteric ganglion) (projecting-onto ilxtr:neuron-type-keast-3) neuron (implies Rattus norvegicus Sympathetic Pre-Ganglionic)
from L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to inferior mesenteric ganglion via L2 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the second lumbar spinal cord segment via white communicating ramus of second lumbar spinal nerve via Second lumbar ganglion via gray communicating ramus of second lumbar nerve via lumbar splanchnic nerve from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to inferior mesenteric ganglion via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion via gray communicating ramus of first lumbar nerve via lumbar splanchnic nerve
L1 and L2 sympathetic ganglia were in the wrong place in the partial order because gray was connected directly to white instead of going through the ganglia\nUpdated to exactly match the diagram in Fahim's tool: https://sckan-partial-order.netlify.app/\nadded L1 and L2 ganglia as vias.\nupdate ANS phenotype
L1-L2 spinal cord segments (rexed laminae VII) to T12-L6 sympathetic chain via white matter of L1-L2 via ventral root of L1-L2 via L1-L2 white communicating rami
In rat, the sympathetic pre-ganglionic connection goes from L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to sixth lumbar sympathetic ganglion via L2 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the second lumbar spinal cord segment via white communicating ramus of second lumbar spinal nerve via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion; from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to First lumbar ganglion via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion; from L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to Fourth lumbar ganglion via L2 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the second lumbar spinal cord segment via white communicating ramus of second lumbar spinal nerve via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion; from L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to fifth lumbar sympathetic ganglion via L2 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the second lumbar spinal cord segment via white communicating ramus of second lumbar spinal nerve via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion; from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to fifth lumbar sympathetic ganglion via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion; from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to Third lumbar ganglion via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion; from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to Second lumbar ganglion via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion; from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to Thirteenth thoracic ganglion via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion via T13 - L1 interganglionic segment of the sympathetic chain via Thirteenth thoracic ganglion; from L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to Third lumbar ganglion via L2 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the second lumbar spinal cord segment via white communicating ramus of second lumbar spinal nerve via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion; from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to Twelfth thoracic ganglion via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion via T13 - L1 interganglionic segment of the sympathetic chain via Thirteenth thoracic ganglion via T12 - T13 interganglionic segment of the sympathetic chain via Twelfth thoracic ganglion; from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to sixth lumbar sympathetic ganglion via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion; from L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to Second lumbar ganglion via L2 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the second lumbar spinal cord segment via white communicating ramus of second lumbar spinal nerve via Second lumbar ganglion; from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to Fourth lumbar ganglion via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion. This connection projects from the L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) and L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord). It is described in Keast model of bladder innervation model.
11 Sept 2025: this modeling has been changed to exactly match the axiomatic representation present in ApiNATOMY model with respect to the partial order. Because the soma locations are mid-spinal level, Tom provided explicit axon paths and included "anatomical space" to be consistent with ApiNATOMY. This will be reverted once the initial round trip SCKAN release happens.
(intersection-of-part-of L1 segment of lumbar spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of L2 segment of lumbar spinal cord lamina VII of gray matter of spinal cord) (with-axons-in (intersection-of-part-of white matter of spinal cord L1 segment of lumbar spinal cord) (intersection-of-part-of white matter of spinal cord L2 segment of lumbar spinal cord) L1 - L2 interganglionic segment L2 - L3 interganglionic segment L3 - L4 interganglionic segment L4 - L5 interganglionic segment L5 - L6 interganglionic segment T12 - T13 interganglionic segment of the sympathetic chain T13 - L1 interganglionic segment of the sympathetic chain ventral root of the first lumbar spinal cord segment ventral root of the second lumbar spinal cord segment white communicating ramus of first lumbar spinal nerve white communicating ramus of second lumbar spinal nerve) (with-axon-presynaptic-element-in L1 sympathetic chain ganglion L2 sympathetic chain ganglion L3 sympathetic chain ganglion L4 sympathetic chain ganglion L5 sympathetic chain ganglion L6 sympathetic chain ganglion T12 sympathetic chain ganglion T13 sympathetic chain ganglion) (projecting-onto ilxtr:neuron-type-keast-4) neuron (implies Rattus norvegicus Sympathetic Pre-Ganglionic)
from L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to sixth lumbar sympathetic ganglion via L2 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the second lumbar spinal cord segment via white communicating ramus of second lumbar spinal nerve via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to First lumbar ganglion via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion from L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to Fourth lumbar ganglion via L2 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the second lumbar spinal cord segment via white communicating ramus of second lumbar spinal nerve via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion from L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to fifth lumbar sympathetic ganglion via L2 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the second lumbar spinal cord segment via white communicating ramus of second lumbar spinal nerve via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to fifth lumbar sympathetic ganglion via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to Third lumbar ganglion via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to Second lumbar ganglion via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to Thirteenth thoracic ganglion via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion via T13 - L1 interganglionic segment of the sympathetic chain via Thirteenth thoracic ganglion from L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to Third lumbar ganglion via L2 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the second lumbar spinal cord segment via white communicating ramus of second lumbar spinal nerve via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to Twelfth thoracic ganglion via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion via T13 - L1 interganglionic segment of the sympathetic chain via Thirteenth thoracic ganglion via T12 - T13 interganglionic segment of the sympathetic chain via Twelfth thoracic ganglion from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to sixth lumbar sympathetic ganglion via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion via L4 - L5 interganglionic segment via fifth lumbar sympathetic ganglion via L5 - L6 interganglionic segment via sixth lumbar sympathetic ganglion from L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to Second lumbar ganglion via L2 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the second lumbar spinal cord segment via white communicating ramus of second lumbar spinal nerve via Second lumbar ganglion from L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to Fourth lumbar ganglion via L1 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the first lumbar spinal cord segment via white communicating ramus of first lumbar spinal nerve via First lumbar ganglion via L1 - L2 interganglionic segment via Second lumbar ganglion via L2 - L3 interganglionic segment via Third lumbar ganglion via L3 - L4 interganglionic segment via Fourth lumbar ganglion
weird modeling. needs review. "anatomical space" added\nSCKAN initial release of round trip: today.\nrework partial order to match existing order and avoid massive crossovers that do not exist in the source, anatomical space added as a hack around composer's inability to have no parent in a partial order because it always forcefully fills with either what is above or the soma\nadded aug2025review tag\nno changes needed to exactly match diagram provided by Fahim's tool https://sckan-partial-order.netlify.app/ wohoo!\nCorrected so all interganglionic segments are connected with both (L1-L2) white communicating rami.\nquestion about citations - all 27? or subset listed in ttl file?
L5-L6 spinal cord segment (rexed laminae IX) to urethral rhabdosphincter via white matter of L5-L6 via ventral root of L5-L6 via pudendal nerve
In rat, the connection goes from L5 segment of lumbar spinal cord (lamina IX of gray matter of spinal cord) to urethra (urethral rhabdosphincter) via L5 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the fifth lumbar spinal cord segment via pudendal nerve; from Sixth lumbar spinal cord segment (lamina IX of gray matter of spinal cord) to urethra (urethral rhabdosphincter) via Sixth lumbar spinal cord segment (white matter of spinal cord) via ventral root of the sixth lumbar spinal cord segment via pudendal nerve. This motor connection projects from the L6 segment of lumbar spinal cord (lamina IX of gray matter of spinal cord) and L5 segment of lumbar spinal cord (lamina IX of gray matter of spinal cord). It is described in Keast model of bladder innervation model.
(intersection-of-part-of L5 segment of lumbar spinal cord lamina IX of gray matter of spinal cord) (intersection-of-part-of L6) (with-axons-in (intersection-of-part-of L6) (intersection-of-part-of white matter of spinal cord L5 segment of lumbar spinal cord) pudendal nerve ventral root of the fifth lumbar spinal cord segment ventral root of the sixth lumbar spinal cord segment) (with-axon-presynaptic-element-in (intersection-of-part-of urethra urethral rhabdosphincter)) (implies Rattus norvegicus motor neuron)
from L5 segment of lumbar spinal cord (lamina IX of gray matter of spinal cord) to urethra (urethral rhabdosphincter) via L5 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the fifth lumbar spinal cord segment via pudendal nerve from Sixth lumbar spinal cord segment (lamina IX of gray matter of spinal cord) to urethra (urethral rhabdosphincter) via Sixth lumbar spinal cord segment (white matter of spinal cord) via ventral root of the sixth lumbar spinal cord segment via pudendal nerve
no changes needed to exactly match the diagram in Fahim's tool https://sckan-partial-order.netlify.app/ woohoo!\nQuestion about citations - all 27? or just what's here?
L6-S1 dorsal root ganglia with axon sensory terminal in arteriole in connective tissue of bladder dome or arteriole in connective tissue of bladder neck or epithelium of fundus of bladder or smooth muscle of fundus of bladder or epithelium of bladder neck or smooth muscle of bladder neck via pelvic splanchnic nerve via pelvic ganglion via bladder nerve with axon terminal in L6-S1 spinal cord (lamina I, V, VII, gray commissure, substantia gelatinosa) via dorsal root of L6-S1
In rat, the connection goes from sixth lumbar dorsal root ganglion to L6 segment of lumbar spinal cord (lamina I of gray matter of spinal cord) or L6 segment of lumbar spinal cord (lamina V of gray matter of spinal cord) or L6 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) or L6 segment of lumbar spinal cord (spinal cord gray commissure) or L6 segment of lumbar spinal cord (substantia gelatinosa) via L6 segment of lumbar spinal cord (white matter of spinal cord); from first sacral dorsal root ganglion or sixth lumbar dorsal root ganglion to neck of urinary bladder (epithelium) or neck of urinary bladder (smooth muscle tissue) via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue) via neck of urinary bladder (smooth muscle tissue); from first sacral dorsal root ganglion or sixth lumbar dorsal root ganglion to fundus of urinary bladder (epithelium) or fundus of urinary bladder (smooth muscle tissue) via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) via fundus of urinary bladder (smooth muscle tissue); from first sacral dorsal root ganglion to S1 segment of sacral spinal cord (lamina I of gray matter of spinal cord) or S1 segment of sacral spinal cord (lamina V of gray matter of spinal cord) or S1 segment of sacral spinal cord (lamina VII of gray matter of spinal cord) or S1 segment of sacral spinal cord (spinal cord gray commissure) or S1 segment of sacral spinal cord (substantia gelatinosa) via S1 segment of sacral spinal cord (white matter of spinal cord); from first sacral dorsal root ganglion or sixth lumbar dorsal root ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue); from first sacral dorsal root ganglion or sixth lumbar dorsal root ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue). This sensory connection projects from the first sacral dorsal root ganglion and sixth lumbar dorsal root ganglion. It is described in Keast model of bladder innervation model.
15 Aug 2025: updated to change dome of bladder to fundus of bladder where present. added fundus of bladder (connective tissue) and neck of bladder (connective tissue) in via.
first sacral dorsal root ganglion sixth lumbar dorsal root ganglion (with-axons-in (intersection-of-part-of L6) (intersection-of-part-of white matter of spinal cord S1 segment of sacral spinal cord)) (with-axon-presynaptic-element-in (intersection-of-part-of L6) (intersection-of-part-of L6) (intersection-of-part-of L6) (intersection-of-part-of L6) (intersection-of-part-of L6) (intersection-of-part-of S1 segment of sacral spinal cord lamina V of gray matter of spinal cord) (intersection-of-part-of S1 segment of sacral spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of lamina I of gray matter of spinal cord S1 segment of sacral spinal cord) (intersection-of-part-of spinal cord gray commissure S1 segment of sacral spinal cord) (intersection-of-part-of substantia gelatinosa S1 segment of sacral spinal cord)) (implies Rattus norvegicus sensory neuron)
from sixth lumbar dorsal root ganglion to L6 segment of lumbar spinal cord (lamina I of gray matter of spinal cord) or L6 segment of lumbar spinal cord (lamina V of gray matter of spinal cord) or L6 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) or L6 segment of lumbar spinal cord (spinal cord gray commissure) or L6 segment of lumbar spinal cord (substantia gelatinosa) via L6 segment of lumbar spinal cord (white matter of spinal cord) from first sacral dorsal root ganglion or sixth lumbar dorsal root ganglion to neck of urinary bladder (epithelium) or neck of urinary bladder (smooth muscle tissue) via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue) via neck of urinary bladder (smooth muscle tissue) from first sacral dorsal root ganglion or sixth lumbar dorsal root ganglion to fundus of urinary bladder (epithelium) or fundus of urinary bladder (smooth muscle tissue) via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) via fundus of urinary bladder (smooth muscle tissue) from first sacral dorsal root ganglion to S1 segment of sacral spinal cord (lamina I of gray matter of spinal cord) or S1 segment of sacral spinal cord (lamina V of gray matter of spinal cord) or S1 segment of sacral spinal cord (lamina VII of gray matter of spinal cord) or S1 segment of sacral spinal cord (spinal cord gray commissure) or S1 segment of sacral spinal cord (substantia gelatinosa) via S1 segment of sacral spinal cord (white matter of spinal cord) from first sacral dorsal root ganglion or sixth lumbar dorsal root ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) from first sacral dorsal root ganglion or sixth lumbar dorsal root ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via pelvic splanchnic nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue)
sensory terminal from sensory axon in smooth muscle instead of from connective tissue, produces a partial order that matches the apinat partial order\nsensory vs normal axon issues\npartial order updated to route to epithelium via smooth muscle matching what is done in apinat\nAdded provenances that were listed in the ttl file, but it seems incomplete. should i add the full list that is present in Fahim's tools? (27 refs)?\nCorrected.\nIlias, check out this sheet: https://docs.google.com/spreadsheets/d/16k5EVlasBGXTBnj_MfgVP9Qe_oQF7VPbd1IL3e_nSvc/edit?gid=713371127#gid=713371127&range=D9\naffected by https://github.com/MetaCell/sckan-composer/issues/277
central gelatinous substance of spinal cord
gelatinous substance of dorsal horn of spinal cord
gelatinous substance of posterior horn of spinal cord
substantia gelatinosa cornu posterioris medullae spinalis
substantia gelatinosa of spinal cord dorsal horn
substantia gelatinosa of spinal cord posterior horn
L1-L2 dorsal root ganglia with axon sensory terminal in arteriole in connective tissue of bladder dome or arteriole in connective tissue of bladder neck or epithelium of bladder dome or smooth muscle of bladder dome or epithelium of bladder neck or smooth muscle of bladder neck via lumbar splanchnic nerve via inferior mesenteric ganglion via hypogastric nerve via pelvic ganglion via bladder nerve with axon terminal in L1-L2 spinal cord (lamina I, V, VII, gray commissure, substantia gelatinosa) via dorsal root of L1-L2
In rat, the connection goes from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via lumbar splanchnic nerve via inferior mesenteric ganglion via hypogastric nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue); from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion to fundus of urinary bladder (epithelium) or fundus of urinary bladder (smooth muscle tissue) via lumbar splanchnic nerve via inferior mesenteric ganglion via hypogastric nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) via fundus of urinary bladder (smooth muscle tissue); from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion to neck of urinary bladder (epithelium) or neck of urinary bladder (smooth muscle tissue) via lumbar splanchnic nerve via inferior mesenteric ganglion via hypogastric nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue) via neck of urinary bladder (smooth muscle tissue); from second lumbar dorsal root ganglion to L2 segment of lumbar spinal cord (lamina I of gray matter of spinal cord) or L2 segment of lumbar spinal cord (lamina V of gray matter of spinal cord) or L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) or L2 segment of lumbar spinal cord (spinal cord gray commissure) or L2 segment of lumbar spinal cord (substantia gelatinosa) via L2 segment of lumbar spinal cord (white matter of spinal cord); from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via lumbar splanchnic nerve via inferior mesenteric ganglion via hypogastric nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue); from first lumbar dorsal root ganglion to L1 segment of lumbar spinal cord (lamina I of gray matter of spinal cord) or L1 segment of lumbar spinal cord (lamina V of gray matter of spinal cord) or L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) or L1 segment of lumbar spinal cord (spinal cord gray commissure) or L1 segment of lumbar spinal cord (substantia gelatinosa) via L1 segment of lumbar spinal cord (white matter of spinal cord). This sensory connection projects from the second lumbar dorsal root ganglion and first lumbar dorsal root ganglion. It is described in Keast model of bladder innervation model.
15 Aug 2025: changed dome of bladder to fundus of bladder; added fundus of bladder (connectivie tissue) and neck of bladder (connective tissue).
first lumbar dorsal root ganglion second lumbar dorsal root ganglion (with-axons-in (intersection-of-part-of white matter of spinal cord L1 segment of lumbar spinal cord) (intersection-of-part-of white matter of spinal cord L2 segment of lumbar spinal cord)) (with-axon-presynaptic-element-in (intersection-of-part-of L1 segment of lumbar spinal cord lamina V of gray matter of spinal cord) (intersection-of-part-of L1 segment of lumbar spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of L2 segment of lumbar spinal cord lamina V of gray matter of spinal cord) (intersection-of-part-of L2 segment of lumbar spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of lamina I of gray matter of spinal cord L1 segment of lumbar spinal cord) (intersection-of-part-of lamina I of gray matter of spinal cord L2 segment of lumbar spinal cord) (intersection-of-part-of spinal cord gray commissure L1 segment of lumbar spinal cord) (intersection-of-part-of spinal cord gray commissure L2 segment of lumbar spinal cord) (intersection-of-part-of substantia gelatinosa L1 segment of lumbar spinal cord) (intersection-of-part-of substantia gelatinosa L2 segment of lumbar spinal cord)) (implies Rattus norvegicus sensory neuron)
from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion to Arteriole in connective tissue of bladder neck (wall of blood vessel) via lumbar splanchnic nerve via inferior mesenteric ganglion via hypogastric nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue) from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion to fundus of urinary bladder (epithelium) or fundus of urinary bladder (smooth muscle tissue) via lumbar splanchnic nerve via inferior mesenteric ganglion via hypogastric nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) via fundus of urinary bladder (smooth muscle tissue) from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion to neck of urinary bladder (epithelium) or neck of urinary bladder (smooth muscle tissue) via lumbar splanchnic nerve via inferior mesenteric ganglion via hypogastric nerve via pelvic ganglion via bladder nerve via neck of urinary bladder (connective tissue) via neck of urinary bladder (smooth muscle tissue) from second lumbar dorsal root ganglion to L2 segment of lumbar spinal cord (lamina I of gray matter of spinal cord) or L2 segment of lumbar spinal cord (lamina V of gray matter of spinal cord) or L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) or L2 segment of lumbar spinal cord (spinal cord gray commissure) or L2 segment of lumbar spinal cord (substantia gelatinosa) via L2 segment of lumbar spinal cord (white matter of spinal cord) from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion to Arteriole in connective tissue of bladder dome (wall of blood vessel) via lumbar splanchnic nerve via inferior mesenteric ganglion via hypogastric nerve via pelvic ganglion via bladder nerve via fundus of urinary bladder (connective tissue) from first lumbar dorsal root ganglion to L1 segment of lumbar spinal cord (lamina I of gray matter of spinal cord) or L1 segment of lumbar spinal cord (lamina V of gray matter of spinal cord) or L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) or L1 segment of lumbar spinal cord (spinal cord gray commissure) or L1 segment of lumbar spinal cord (substantia gelatinosa) via L1 segment of lumbar spinal cord (white matter of spinal cord)
connect smooth muscle terminals to axon in smooth muscle instead of from axon in connective tissue, also fix axon terminal in bladder neck connective tissue to correctly be in smooth muscle in the process\npartial order updated to route to epithelium via smooth muscle matching what is done in apinat\nmodified the path to match the diagram exactly as provided by Fahim's tool: https://sckan-partial-order.netlify.app/ This required adding fundus and neck (connectivie tissue) as a via; and swapping dome of bladder regions for similarly named (with layers) for fundus of bladder. Dome of bladder is more accruate, iirc.
L6-S1 dorsal root ganglia with axon sensory terminal in urethral rhabosphincter via pudendal nerve with axon terminal in L6-S1 spinal cord (lamina I, V, VII, gray commissure, substantia gelatinosa) via dorsal root of L6-S1
In rat, the connection goes from sixth lumbar dorsal root ganglion to Sixth lumbar spinal cord segment (lamina I of gray matter of spinal cord) or Sixth lumbar spinal cord segment (lamina V of gray matter of spinal cord) or Sixth lumbar spinal cord segment (lamina VII of gray matter of spinal cord) or Sixth lumbar spinal cord segment (spinal cord gray commissure) or Sixth lumbar spinal cord segment (substantia gelatinosa) via Sixth lumbar spinal cord segment (white matter of spinal cord); from first sacral dorsal root ganglion or sixth lumbar dorsal root ganglion to urethra (urethral rhabdosphincter) via pudendal nerve; from first sacral dorsal root ganglion to S1 segment of sacral spinal cord (lamina I of gray matter of spinal cord) or S1 segment of sacral spinal cord (lamina V of gray matter of spinal cord) or S1 segment of sacral spinal cord (lamina VII of gray matter of spinal cord) or S1 segment of sacral spinal cord (spinal cord gray commissure) or S1 segment of sacral spinal cord (substantia gelatinosa) via S1 segment of sacral spinal cord (white matter of spinal cord). This sensory connection projects from the first sacral dorsal root ganglion and sixth lumbar dorsal root ganglion. It is described in Keast model of bladder innervation model.
from sixth lumbar dorsal root ganglion to Sixth lumbar spinal cord segment (lamina I of gray matter of spinal cord) or Sixth lumbar spinal cord segment (lamina V of gray matter of spinal cord) or Sixth lumbar spinal cord segment (lamina VII of gray matter of spinal cord) or Sixth lumbar spinal cord segment (spinal cord gray commissure) or Sixth lumbar spinal cord segment (substantia gelatinosa) via Sixth lumbar spinal cord segment (white matter of spinal cord) from first sacral dorsal root ganglion or sixth lumbar dorsal root ganglion to urethra (urethral rhabdosphincter) via pudendal nerve from first sacral dorsal root ganglion to S1 segment of sacral spinal cord (lamina I of gray matter of spinal cord) or S1 segment of sacral spinal cord (lamina V of gray matter of spinal cord) or S1 segment of sacral spinal cord (lamina VII of gray matter of spinal cord) or S1 segment of sacral spinal cord (spinal cord gray commissure) or S1 segment of sacral spinal cord (substantia gelatinosa) via S1 segment of sacral spinal cord (white matter of spinal cord)
no changes needed to match diagram in fahim's tool: https://sckan-partial-order.netlify.app/\nupdated axon leading to PNS for the urethra\nconfirm citations = all 27? or the subset listed?
bed nucleus of stria terminalis to Barrington's nucleus via telencephalon via diencephalon via midbrain via pons
In rat, the connection goes from bed nucleus of stria terminalis to Barrington's nucleus via telencephalon (neural tissue) via diencephalon (neural tissue) via midbrain (neural tissue) via pons (neural tissue). This spinal cord descending projection phenotype connection projects from the bed nucleus of stria terminalis. It is described in Keast model of bladder innervation model.
15 Aug 2025: added the neural tissue layers back to the regions in the axon path.
BST (with-axons-in (intersection-of-part-of DiE) (intersection-of-part-of MB) (intersection-of-part-of pons) (intersection-of-part-of telencephalon neural tissue)) (with-axon-presynaptic-element-in Barrington's nucleus) (projecting-onto ilxtr:neuron-type-keast-20) neuron (implies Rattus norvegicus (projecting-to Spinal cord descending projection))
from bed nucleus of stria terminalis to Barrington's nucleus via telencephalon (neural tissue) via diencephalon (neural tissue) via midbrain (neural tissue) via pons (neural tissue)
updated the via axioms to include the expanded terms (region(layer)) as provided in the diagram in Fahim's tool https://sckan-partial-order.netlify.app/\nRemoving circuit phenotype = projection.\nNeeds phenotype = blank (no phenotype) \nNeeds Projection Phenotype = spinal cord descending projection phenotype\nReady for review.\nThis population includes the vias as the telencephalon, diencephalon and midbrain. not sure if we are planning this level of specificity?\nI don't know the phenotype for this cortical projecting neuron.
Barrington's nucleus to lamina VII of L6 via pons via medulla oblongata via white matter of C1-L5; Barrington's nucleus to lamina VII of S1 via pons via medulla oblongata via white matter of C1-L6
In rat, the connection goes from Barrington's nucleus to S1 segment of sacral spinal cord (lamina VII of gray matter of spinal cord) via pons (neural tissue) via medulla oblongata (neural tissue) via C1 segment of cervical spinal cord (white matter of spinal cord) via C2 segment of cervical spinal cord (white matter of spinal cord) via C3 segment of cervical spinal cord (white matter of spinal cord) via C4 segment of cervical spinal cord (white matter of spinal cord) via C5 segment of cervical spinal cord (white matter of spinal cord) via C6 segment of cervical spinal cord (white matter of spinal cord) via C7 segment of cervical spinal cord (white matter of spinal cord) via C8 segment of cervical spinal cord (white matter of spinal cord) via T1 segment of thoracic spinal cord (white matter of spinal cord) via T2 segment of thoracic spinal cord (white matter of spinal cord) via T3 segment of thoracic spinal cord (white matter of spinal cord) via T4 segment of thoracic spinal cord (white matter of spinal cord) via T5 segment of thoracic spinal cord (white matter of spinal cord) via T6 segment of thoracic spinal cord (white matter of spinal cord) via T7 segment of thoracic spinal cord (white matter of spinal cord) via T8 segment of thoracic spinal cord (white matter of spinal cord) via T9 segment of thoracic spinal cord (white matter of spinal cord) via T10 segment of thoracic spinal cord (white matter of spinal cord) via T11 segment of thoracic spinal cord (white matter of spinal cord) via T12 segment of thoracic spinal cord (white matter of spinal cord) via Thirteenth thoracic spinal cord segment (white matter of spinal cord) via L1 segment of lumbar spinal cord (white matter of spinal cord) via L2 segment of lumbar spinal cord (white matter of spinal cord) via L3 segment of lumbar spinal cord (white matter of spinal cord) via L4 segment of lumbar spinal cord (white matter of spinal cord) via L5 segment of lumbar spinal cord (white matter of spinal cord) via L6 segment of lumbar spinal cord (white matter of spinal cord); from Barrington's nucleus to L6 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) via pons (neural tissue) via medulla oblongata (neural tissue) via C1 segment of cervical spinal cord (white matter of spinal cord) via C2 segment of cervical spinal cord (white matter of spinal cord) via C3 segment of cervical spinal cord (white matter of spinal cord) via C4 segment of cervical spinal cord (white matter of spinal cord) via C5 segment of cervical spinal cord (white matter of spinal cord) via C6 segment of cervical spinal cord (white matter of spinal cord) via C7 segment of cervical spinal cord (white matter of spinal cord) via C8 segment of cervical spinal cord (white matter of spinal cord) via T1 segment of thoracic spinal cord (white matter of spinal cord) via T2 segment of thoracic spinal cord (white matter of spinal cord) via T3 segment of thoracic spinal cord (white matter of spinal cord) via T4 segment of thoracic spinal cord (white matter of spinal cord) via T5 segment of thoracic spinal cord (white matter of spinal cord) via T6 segment of thoracic spinal cord (white matter of spinal cord) via T7 segment of thoracic spinal cord (white matter of spinal cord) via T8 segment of thoracic spinal cord (white matter of spinal cord) via T9 segment of thoracic spinal cord (white matter of spinal cord) via T10 segment of thoracic spinal cord (white matter of spinal cord) via T11 segment of thoracic spinal cord (white matter of spinal cord) via T12 segment of thoracic spinal cord (white matter of spinal cord) via Thirteenth thoracic spinal cord segment (white matter of spinal cord) via L1 segment of lumbar spinal cord (white matter of spinal cord) via L2 segment of lumbar spinal cord (white matter of spinal cord) via L3 segment of lumbar spinal cord (white matter of spinal cord) via L4 segment of lumbar spinal cord (white matter of spinal cord) via L5 segment of lumbar spinal cord (white matter of spinal cord). This spinal cord descending projection phenotype connection projects from the Barrington's nucleus. It is described in Keast model of bladder innervation model.
Barrington's nucleus (with-axons-in (intersection-of-part-of L6) (intersection-of-part-of bulb) (intersection-of-part-of pons) (intersection-of-part-of white matter of spinal cord C1 segment of cervical spinal cord) (intersection-of-part-of white matter of spinal cord C2 segment of cervical spinal cord) (intersection-of-part-of white matter of spinal cord C3 segment of cervical spinal cord) (intersection-of-part-of white matter of spinal cord C4 segment of cervical spinal cord) (intersection-of-part-of white matter of spinal cord C5 segment of cervical spinal cord) (intersection-of-part-of white matter of spinal cord C6 segment of cervical spinal cord) (intersection-of-part-of white matter of spinal cord C7 segment of cervical spinal cord) (intersection-of-part-of white matter of spinal cord C8 segment of cervical spinal cord) (intersection-of-part-of white matter of spinal cord L1 segment of lumbar spinal cord) (intersection-of-part-of white matter of spinal cord L2 segment of lumbar spinal cord) (intersection-of-part-of white matter of spinal cord L3 segment of lumbar spinal cord) (intersection-of-part-of white matter of spinal cord L4 segment of lumbar spinal cord) (intersection-of-part-of white matter of spinal cord L5 segment of lumbar spinal cord) (intersection-of-part-of white matter of spinal cord T1 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T10 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T11 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T12 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T13 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T2 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T3 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T4 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T5 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T6 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T7 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T8 segment of thoracic spinal cord) (intersection-of-part-of white matter of spinal cord T9 segment of thoracic spinal cord)) (with-axon-presynaptic-element-in (intersection-of-part-of L6) (intersection-of-part-of S1 segment of sacral spinal cord lamina VII of gray matter of spinal cord)) (projecting-onto ilxtr:neuron-type-keast-5) neuron (implies Rattus norvegicus (projecting-to Spinal cord descending projection))
from Barrington's nucleus to S1 segment of sacral spinal cord (lamina VII of gray matter of spinal cord) via pons (neural tissue) via medulla oblongata (neural tissue) via C1 segment of cervical spinal cord (white matter of spinal cord) via C2 segment of cervical spinal cord (white matter of spinal cord) via C3 segment of cervical spinal cord (white matter of spinal cord) via C4 segment of cervical spinal cord (white matter of spinal cord) via C5 segment of cervical spinal cord (white matter of spinal cord) via C6 segment of cervical spinal cord (white matter of spinal cord) via C7 segment of cervical spinal cord (white matter of spinal cord) via C8 segment of cervical spinal cord (white matter of spinal cord) via T1 segment of thoracic spinal cord (white matter of spinal cord) via T2 segment of thoracic spinal cord (white matter of spinal cord) via T3 segment of thoracic spinal cord (white matter of spinal cord) via T4 segment of thoracic spinal cord (white matter of spinal cord) via T5 segment of thoracic spinal cord (white matter of spinal cord) via T6 segment of thoracic spinal cord (white matter of spinal cord) via T7 segment of thoracic spinal cord (white matter of spinal cord) via T8 segment of thoracic spinal cord (white matter of spinal cord) via T9 segment of thoracic spinal cord (white matter of spinal cord) via T10 segment of thoracic spinal cord (white matter of spinal cord) via T11 segment of thoracic spinal cord (white matter of spinal cord) via T12 segment of thoracic spinal cord (white matter of spinal cord) via Thirteenth thoracic spinal cord segment (white matter of spinal cord) via L1 segment of lumbar spinal cord (white matter of spinal cord) via L2 segment of lumbar spinal cord (white matter of spinal cord) via L3 segment of lumbar spinal cord (white matter of spinal cord) via L4 segment of lumbar spinal cord (white matter of spinal cord) via L5 segment of lumbar spinal cord (white matter of spinal cord) via L6 segment of lumbar spinal cord (white matter of spinal cord) from Barrington's nucleus to L6 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) via pons (neural tissue) via medulla oblongata (neural tissue) via C1 segment of cervical spinal cord (white matter of spinal cord) via C2 segment of cervical spinal cord (white matter of spinal cord) via C3 segment of cervical spinal cord (white matter of spinal cord) via C4 segment of cervical spinal cord (white matter of spinal cord) via C5 segment of cervical spinal cord (white matter of spinal cord) via C6 segment of cervical spinal cord (white matter of spinal cord) via C7 segment of cervical spinal cord (white matter of spinal cord) via C8 segment of cervical spinal cord (white matter of spinal cord) via T1 segment of thoracic spinal cord (white matter of spinal cord) via T2 segment of thoracic spinal cord (white matter of spinal cord) via T3 segment of thoracic spinal cord (white matter of spinal cord) via T4 segment of thoracic spinal cord (white matter of spinal cord) via T5 segment of thoracic spinal cord (white matter of spinal cord) via T6 segment of thoracic spinal cord (white matter of spinal cord) via T7 segment of thoracic spinal cord (white matter of spinal cord) via T8 segment of thoracic spinal cord (white matter of spinal cord) via T9 segment of thoracic spinal cord (white matter of spinal cord) via T10 segment of thoracic spinal cord (white matter of spinal cord) via T11 segment of thoracic spinal cord (white matter of spinal cord) via T12 segment of thoracic spinal cord (white matter of spinal cord) via Thirteenth thoracic spinal cord segment (white matter of spinal cord) via L1 segment of lumbar spinal cord (white matter of spinal cord) via L2 segment of lumbar spinal cord (white matter of spinal cord) via L3 segment of lumbar spinal cord (white matter of spinal cord) via L4 segment of lumbar spinal cord (white matter of spinal cord) via L5 segment of lumbar spinal cord (white matter of spinal cord)
updated to exactly match diagram in Fahim's tool: https://sckan-partial-order.netlify.app/\nAfter consulting with Bernard populations kblad 13-20 were corrected as they were originally coded by Composer. Origins and destinations are regions and not layers. So we need to add the regions of the brain as via.\nneeds removal of phenotype = not specified\nneeds projection phenotype = spinal cord descending projection phenotype\nReady for review. Population diagram needs work to fit the entire population more cleanly, for sure. Took me longer to move the squares than it did to build/review the neuron population.
interstitial nucleus of stria terminalis
nucleus interstitialis striae terminalis
nucleus proprius stria terminalis (bed nucleus)
central nucleus of amygdala to Barrington's nucleus via telencephalon via diencephalon via midbrain via pons
In rat, the connection goes from central amygdaloid nucleus to Barrington's nucleus via telencephalon (neural tissue) via diencephalon (neural tissue) via midbrain (neural tissue) via pons (neural tissue). This spinal cord descending projection phenotype projection connection projects from the central amygdaloid nucleus. It is described in Keast model of bladder innervation model.
central amygdaloid nucleus (with-axons-in (intersection-of-part-of DiE) (intersection-of-part-of MB) (intersection-of-part-of pons) (intersection-of-part-of telencephalon neural tissue)) (with-axon-presynaptic-element-in Barrington's nucleus) (projecting-onto ilxtr:neuron-type-keast-20) (implies Rattus norvegicus (projecting-to Spinal cord descending projection) projection neuron)
from central amygdaloid nucleus to Barrington's nucleus via telencephalon (neural tissue) via diencephalon (neural tissue) via midbrain (neural tissue) via pons (neural tissue)
updated to exactly match Fahim's diagram in https://sckan-partial-order.netlify.app/ ; however i liked the composer version better (no neural tissue layers for the regions).\nard connection to kblad-20 (https://docs.google.com/spreadsheets/d/16k5EVlasBGXTBnj_MfgVP9Qe_oQF7VPbd1IL3e_nSvc/edit?gid=713371127#gid=713371127&range=B55)\nremoved telecephalon as a via to match : https://docs.google.com/spreadsheets/d/16k5EVlasBGXTBnj_MfgVP9Qe_oQF7VPbd1IL3e_nSvc/edit?gid=713371127#gid=713371127&range=B55\nremoved forward connection and wonder if we should retain the "projection" phenotype?
medial preoptic region to Barrington's nucleus via diencephalon via midbrain via pons
In rat, the connection goes from medial preoptic region to Barrington's nucleus via diencephalon (neural tissue) via midbrain (neural tissue) via pons (neural tissue). This spinal cord descending projection phenotype projection connection projects from the medial preoptic region. It is described in Keast model of bladder innervation model.
medial preoptic region (with-axons-in (intersection-of-part-of DiE) (intersection-of-part-of MB) (intersection-of-part-of pons)) (with-axon-presynaptic-element-in Barrington's nucleus) (projecting-onto ilxtr:neuron-type-keast-20) (implies Rattus norvegicus (projecting-to Spinal cord descending projection) projection neuron)
from medial preoptic region to Barrington's nucleus via diencephalon (neural tissue) via midbrain (neural tissue) via pons (neural tissue)
set projection phenotype; set 'non specified' phenotype\nneeds "spinal cord descending projection" phenotype
median preoptic nucleus to Barrington's nucleus via diencephalon via midbrain via pons
In rat, the connection goes from median preoptic nucleus to Barrington's nucleus via diencephalon (neural tissue) via midbrain (neural tissue) via pons (neural tissue). This spinal cord descending projection phenotype connection projects from the median preoptic nucleus. It is described in Keast model of bladder innervation model.
MnPO (with-axons-in (intersection-of-part-of DiE) (intersection-of-part-of MB) (intersection-of-part-of pons)) (with-axon-presynaptic-element-in Barrington's nucleus) (projecting-onto ilxtr:neuron-type-keast-20) neuron (implies Rattus norvegicus (projecting-to Spinal cord descending projection))
from median preoptic nucleus to Barrington's nucleus via diencephalon (neural tissue) via midbrain (neural tissue) via pons (neural tissue)
updated the model to match exactly the diagram as provided by Fahim's tool https://sckan-partial-order.netlify.app/\nI have reviewed all the rest so far neurons 13-18 and I have kept the modeling we used to do for ApiNATOMY too. Axon goes through those regions and since we are not including region (layer) I don't see a reason to not include them and rely exclusively on the partonomy of the ontology to figure out.\n@ilias, in this sheet: https://docs.google.com/spreadsheets/d/16k5EVlasBGXTBnj_MfgVP9Qe_oQF7VPbd1IL3e_nSvc/edit?gid=713371127#gid=713371127&range=B68, keast 16 has a simpler via routing (no diencephalon, no pons). removing to make this match that sheet, as well as what I see in Fahim's tools.\nShould we include pons (neural tissue) as a via?\nSpecified as Projection neuron; if there's another phenotype to select please let me know the predicate & object, and i'll add it to the table.
periventricular nucleus, preventricular portion
lateral preoptic nucleus to Barrington's nucleus via diencephalon via midbrain via pons
In rat, the connection goes from lateral preoptic nucleus to Barrington's nucleus via diencephalon (neural tissue) via midbrain (neural tissue) via pons (neural tissue). This spinal cord descending projection phenotype projection connection projects from the lateral preoptic nucleus. It is described in Keast model of bladder innervation model.
LPO (with-axons-in (intersection-of-part-of DiE) (intersection-of-part-of MB) (intersection-of-part-of pons)) (with-axon-presynaptic-element-in Barrington's nucleus) (projecting-onto ilxtr:neuron-type-keast-20) (implies Rattus norvegicus (projecting-to Spinal cord descending projection) projection neuron)
from lateral preoptic nucleus to Barrington's nucleus via diencephalon (neural tissue) via midbrain (neural tissue) via pons (neural tissue)
updated the axons to include region(layer) pairs.will say that i preferred the simpler modeling that was present in composer already, tho.\nthis doesn't include traversal through telencephalon, or pons, but conceivably could.
lateral hypothalamic area to Barrington's nucleus via diencephalon via midbrain via pons
In rat, the connection goes from lateral hypothalamic area to Barrington's nucleus via diencephalon (neural tissue) via midbrain (neural tissue) via pons (neural tissue). This spinal cord descending projection phenotype projection connection projects from the lateral hypothalamic area. It is described in Keast model of bladder innervation model.
LH (with-axons-in (intersection-of-part-of DiE) (intersection-of-part-of MB) (intersection-of-part-of pons)) (with-axon-presynaptic-element-in Barrington's nucleus) (projecting-onto ilxtr:neuron-type-keast-20) (implies Rattus norvegicus (projecting-to Spinal cord descending projection) projection neuron)
from lateral hypothalamic area to Barrington's nucleus via diencephalon (neural tissue) via midbrain (neural tissue) via pons (neural tissue)
updated to exactly match the diagram provided by Fahim's tool https://sckan-partial-order.netlify.app/\nIt turns out that one of the identifiers provided maps to just midbrain, but the question is why are there two? Ask Tom.\nCheck on the use of midbrain (neural tissue) because I don't think we use that consistently.\nI believe that we decided that we do not include an explicit statement about axons within the enclosing anatomical area for the termination, i.e., pons, because it is implied by having an axon terminal in Barrington's nucleus. But we should confirm and then document.\ncheck projection neuron type, also, include traversal through pons to Barrington's nucleus?
ventrolateral periaqueductal gray to Barrington's nucleus via midbrain via pons
In rat, the connection goes from ventrolateral periaqueductal gray to Barrington's nucleus via midbrain (neural tissue) via pons (neural tissue). This spinal cord descending projection phenotype projection connection projects from the ventrolateral periaqueductal gray. It is described in Keast model of bladder innervation model.
ventrolateral periaqueductal gray (with-axons-in (intersection-of-part-of MB) (intersection-of-part-of pons)) (with-axon-presynaptic-element-in Barrington's nucleus) (projecting-onto ilxtr:neuron-type-keast-20) (implies Rattus norvegicus (projecting-to Spinal cord descending projection) projection neuron)
from ventrolateral periaqueductal gray to Barrington's nucleus via midbrain (neural tissue) via pons (neural tissue)
updated to exactly match the diagram in Fahim's tool: https://sckan-partial-order.netlify.app/\nneeds projection phenotype = spinal cord descending phenotype; remove not specified\nI'm not sure what phenotype to select for this neuron population. (the various shades of brown aren't included in the Key of the Keast-bladder-2-1.pdf on github.
lamina VII of T5-T9 to celiac ganglion or superior mesenteric ganglion via ventral roots of T5-T9 via T5-T9 sympathetic ganglia via greater splanchnic nerve
A sympathetic pre-ganglionic connection goes from T5 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T6 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T7 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T8 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T9 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to celiac ganglion or superior mesenteric ganglion via ventral root of the fifth thoracic spinal cord segment via ventral root of the sixth thoracic spinal cord segment via Eighth thoracic ganglion, Fifth thoracic ganglion, Ninth thoracic ganglion, Seventh thoracic ganglion, Sixth thoracic ganglion via greater splanchnic nerve; from T5 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T6 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T7 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T8 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T9 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to celiac ganglion or superior mesenteric ganglion via ventral root of the fifth thoracic spinal cord segment via ventral root of the sixth thoracic spinal cord segment via ventral root of the seventh thoracic spinal cord segment via Eighth thoracic ganglion, Fifth thoracic ganglion, Ninth thoracic ganglion, Seventh thoracic ganglion, Sixth thoracic ganglion via greater splanchnic nerve; from T5 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T6 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T7 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T8 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T9 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to celiac ganglion or superior mesenteric ganglion via ventral root of the fifth thoracic spinal cord segment via ventral root of the sixth thoracic spinal cord segment via ventral root of the seventh thoracic spinal cord segment via ventral root of the eighth thoracic spinal cord segment via ventral root of the ninth thoracic spinal cord segment via Eighth thoracic ganglion, Fifth thoracic ganglion, Ninth thoracic ganglion, Seventh thoracic ganglion, Sixth thoracic ganglion via greater splanchnic nerve; from T5 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T6 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T7 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T8 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T9 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to celiac ganglion or superior mesenteric ganglion via ventral root of the fifth thoracic spinal cord segment via Eighth thoracic ganglion, Fifth thoracic ganglion, Ninth thoracic ganglion, Seventh thoracic ganglion, Sixth thoracic ganglion via greater splanchnic nerve; from T5 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T6 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T7 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T8 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T9 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to celiac ganglion or superior mesenteric ganglion via ventral root of the fifth thoracic spinal cord segment via ventral root of the sixth thoracic spinal cord segment via ventral root of the seventh thoracic spinal cord segment via ventral root of the eighth thoracic spinal cord segment via Eighth thoracic ganglion, Fifth thoracic ganglion, Ninth thoracic ganglion, Seventh thoracic ganglion, Sixth thoracic ganglion via greater splanchnic nerve. This connection projects from the T5 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord), T6 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord), T8 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord), T7 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) and T9 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord). It is described in SAWG model of the pancreas model.
(intersection-of-part-of T5 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T6 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T7 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T8 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of T9 segment of thoracic spinal cord lamina VII of gray matter of spinal cord) (with-axons-in T5 sympathetic chain ganglion T6 sympathetic chain ganglion T7 sympathetic chain ganglion T8 sympathetic chain ganglion T9 sympathetic chain ganglion greater splanchnic nerve ventral root of the eighth thoracic spinal cord segment ventral root of the fifth thoracic spinal cord segment ventral root of the ninth thoracic spinal cord segment ventral root of the seventh thoracic spinal cord segment ventral root of the sixth thoracic spinal cord segment) (with-axon-presynaptic-element-in celiac ganglion superior mesenteric ganglion) (projecting-onto ilxtr:neuron-type-pancr-2) neuron (implies Sympathetic Pre-Ganglionic)
from T5 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T6 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T7 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T8 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T9 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to celiac ganglion or superior mesenteric ganglion via ventral root of the fifth thoracic spinal cord segment via ventral root of the sixth thoracic spinal cord segment via Eighth thoracic ganglion, Fifth thoracic ganglion, Ninth thoracic ganglion, Seventh thoracic ganglion, Sixth thoracic ganglion via greater splanchnic nerve from T5 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T6 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T7 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T8 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T9 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to celiac ganglion or superior mesenteric ganglion via ventral root of the fifth thoracic spinal cord segment via ventral root of the sixth thoracic spinal cord segment via ventral root of the seventh thoracic spinal cord segment via Eighth thoracic ganglion, Fifth thoracic ganglion, Ninth thoracic ganglion, Seventh thoracic ganglion, Sixth thoracic ganglion via greater splanchnic nerve from T5 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T6 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T7 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T8 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T9 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to celiac ganglion or superior mesenteric ganglion via ventral root of the fifth thoracic spinal cord segment via ventral root of the sixth thoracic spinal cord segment via ventral root of the seventh thoracic spinal cord segment via ventral root of the eighth thoracic spinal cord segment via ventral root of the ninth thoracic spinal cord segment via Eighth thoracic ganglion, Fifth thoracic ganglion, Ninth thoracic ganglion, Seventh thoracic ganglion, Sixth thoracic ganglion via greater splanchnic nerve from T5 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T6 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T7 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T8 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T9 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to celiac ganglion or superior mesenteric ganglion via ventral root of the fifth thoracic spinal cord segment via Eighth thoracic ganglion, Fifth thoracic ganglion, Ninth thoracic ganglion, Seventh thoracic ganglion, Sixth thoracic ganglion via greater splanchnic nerve from T5 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T6 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T7 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T8 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) or T9 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord) to celiac ganglion or superior mesenteric ganglion via ventral root of the fifth thoracic spinal cord segment via ventral root of the sixth thoracic spinal cord segment via ventral root of the seventh thoracic spinal cord segment via ventral root of the eighth thoracic spinal cord segment via Eighth thoracic ganglion, Fifth thoracic ganglion, Ninth thoracic ganglion, Seventh thoracic ganglion, Sixth thoracic ganglion via greater splanchnic nerve
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded dendrites in same location as all somas\nRemoved all the afferent terminals connected to the colacated soma just to conform with ApINATOMY partial order. This is for Composer-SCKAN round-trip. (Augut 14, 2025)\nremoved non-resolving ILX uri from provenance\nThis should be reviewed again more closely. to see if T5-T9 VII are both origin and destinations.\nREVIEW: not sure about the routing of this population between ventral root and sympathetic chain. Additionally: in the SPLEN model, the CG/SMG is fused entity. Is the pancreas neurons terminating in the non-fused individual ganglia?
celiac ganglion or superior mesenteric ganglion to intrapancreatic ganglia or islet of Langerhans via splenic artery (adventitia) via Nerve plexus in adventitia of splenic artery via pancreatic acinus (connective tissue); from celiac ganglion or superior mesenteric ganglion to intrapancreatic ganglia or islet of Langerhans via adventitia of superior mesenteric artery via inferior pancreaticoduodenal artery (adventitia) via inferior pancreaticoduodenal artery (nerve plexus) via pancreatic acinus; from celiac ganglion or superior mesenteric ganglion to intrapancreatic ganglia or islet of Langerhans via celiac trunk (adventitia) via hepatic artery (adventitia) via hepatic artery (nerve plexus) via pancreatic acinus
A sympathetic post-ganglionic connection goes from celiac ganglion or superior mesenteric ganglion to intrapancreatic ganglia or islet of Langerhans via celiac trunk (tunica adventitia of blood vessel) via hepatic artery (tunica adventitia of blood vessel) via nerve plexus in adventitia of hepatic artery via pancreatic acinus (connective tissue) via intrapancreatic ganglia; from celiac ganglion or superior mesenteric ganglion to intrapancreatic ganglia or islet of Langerhans via splenic artery (tunica adventitia of blood vessel) via Nerve plexus in adventitia of splenic artery via pancreatic acinus (connective tissue) via intrapancreatic ganglia; from celiac ganglion or superior mesenteric ganglion to intrapancreatic ganglia or islet of Langerhans via superior mesenteric artery (tunica adventitia of blood vessel) via inferior pancreaticoduodenal artery (tunica adventitia of blood vessel) via nerve plexus in adventitia of inferior pancreaticoduodenal artery via pancreatic acinus (connective tissue) via intrapancreatic ganglia. This connection projects from the celiac ganglion and superior mesenteric ganglion. It is described in SAWG model of the pancreas model.
10/30/25 [ST]: this ApiNATOMY population had dendrites co-located with the soma. These have been removed.
celiac ganglion superior mesenteric ganglion (with-axons-in (intersection-of-part-of hepatic artery tunica adventitia of blood vessel) (intersection-of-part-of inferior pancreaticoduodenal artery tunica adventitia of blood vessel) (intersection-of-part-of pancreatic acinus connective tissue) (intersection-of-part-of splenic artery tunica adventitia of blood vessel) (intersection-of-part-of superior mesenteric artery tunica adventitia of blood vessel) (intersection-of-part-of tunica adventitia of blood vessel celiac trunk) Nerve plexus in adventitia of splenic artery nerve plexus in adventitia of hepatic artery nerve plexus in adventitia of inferior pancreaticoduodenal artery) (with-axon-presynaptic-element-in intrapancreatic ganglia islet of Langerhans) (projecting-onto ilxtr:neuron-type-pancr-3) neuron (implies Sympathetic Post-Ganglionic)
from celiac ganglion or superior mesenteric ganglion to intrapancreatic ganglia or islet of Langerhans via celiac trunk (tunica adventitia of blood vessel) via hepatic artery (tunica adventitia of blood vessel) via nerve plexus in adventitia of hepatic artery via pancreatic acinus (connective tissue) via intrapancreatic ganglia from celiac ganglion or superior mesenteric ganglion to intrapancreatic ganglia or islet of Langerhans via splenic artery (tunica adventitia of blood vessel) via Nerve plexus in adventitia of splenic artery via pancreatic acinus (connective tissue) via intrapancreatic ganglia from celiac ganglion or superior mesenteric ganglion to intrapancreatic ganglia or islet of Langerhans via superior mesenteric artery (tunica adventitia of blood vessel) via inferior pancreaticoduodenal artery (tunica adventitia of blood vessel) via nerve plexus in adventitia of inferior pancreaticoduodenal artery via pancreatic acinus (connective tissue) via intrapancreatic ganglia
Updated the model to have the celiac trunk and superior mesenteric artery's origins : celiac ganglion and superior mesenteric ganglion.\n10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed. This population also has colocated axons and axon terminals. need to review.\nchange from tunadv art -> bv also makes the layers used in this population internally consistent as all others were already bv\nrelax tunica adv from artery -> blood vessel to match apinatomy convention, I suspect that we could handle these kinds of patterns using a general class axiom along the lines of intersectionOfPartOf artery and tunadv-of-blood-vessel subClassOf intersectionOfPartOf artery and tunadv-of-artery or something like that\ndecision was to have the partial order go from artery to nerve plexus to acinus; since it creates a loop otherwise.\nupdated vessels to match region(layers) as denoted in the diagram here: https://sckan-partial-order.netlify.app/\nadded dendrites\nremoved non-resolving ILX uri from provenance\nRegarding the species from the discussion I had with Bernard, I would infer that the species is humans as celiac and SMG ganglia are mentioned separately. However, we can make this assumption. I would leave it blank.\nReady for re-review. Can we indicate a species since we are listing the 2 ganglia instead of the CSM-complex?\nQuestion: In other models, we've represented this origin as the celiac-superior mesenteric complex...do we what to do this here?
intrapancreatic ganglia to islet of Langerhans
A connection goes from intrapancreatic ganglia to islet of Langerhans via intrapancreatic ganglia via pancreatic acinus (connective tissue). This connection projects from the intrapancreatic ganglia. It is described in SAWG model of the pancreas model.
10/30/25 [ST]: This ApiNATOMY population had a colocated dendrite with the soma. This has been removed.
intrapancreatic ganglia (with-axon-in (intersection-of-part-of pancreatic acinus connective tissue)) (with-axon-presynaptic-element-in islet of Langerhans) neuron
from intrapancreatic ganglia to islet of Langerhans via intrapancreatic ganglia via pancreatic acinus (connective tissue)
10/30/25 {[ST]: This ApiNATOMY population had a colocated dendrite with the soma. This has been removed.\nadded missing via in the connective tissue\nupdated to add dendrites in same location as soma\nupdated A to B via C label\nHow should we model the layer within a layer within a region? seems like the ApiNATOMY is saying : [pancreatic acini (connective tissue (Intrapancreatic ganglia))] for the soma?\nChangelog: Added the via that was missing - Composer said it was invalid because it was missing, but it is there? not sure what axiom is missing there. The Intrapancreatic ganglia are present, not sure why Composer says the via is missing. this one is puzzling.
myenteric plexus of gastric antrum or myenteric plexus of proximal duodenum to intrapancreatic ganglia or pancreatic acinus epithelium via basement membrane of pancreatic acinus
A enteric connection goes from pyloric antrum (myenteric nerve plexus) to intrapancreatic ganglia via pyloric antrum (stomach smooth muscle outer longitudinal layer) via pyloric antrum (gastrointestinal system serosa) via pancreatic acinus (connective tissue) via intrapancreatic ganglia; from Proximal half of duodenum (myenteric nerve plexus) to pancreatic acinus (Epithelium of pancreatic acinus) via Proximal half of duodenum (stomach smooth muscle outer longitudinal layer) via Proximal half of duodenum (gastrointestinal system serosa) via pancreatic acinus (connective tissue) via pancreatic acinus (basement membrane of epithelium); from pyloric antrum (myenteric nerve plexus) to pancreatic acinus (Epithelium of pancreatic acinus) via pyloric antrum (stomach smooth muscle outer longitudinal layer) via pyloric antrum (gastrointestinal system serosa) via pancreatic acinus (connective tissue) via pancreatic acinus (basement membrane of epithelium); from Proximal half of duodenum (myenteric nerve plexus) to intrapancreatic ganglia via Proximal half of duodenum (stomach smooth muscle outer longitudinal layer) via Proximal half of duodenum (gastrointestinal system serosa) via pancreatic acinus (connective tissue) via intrapancreatic ganglia. This connection projects from the pyloric antrum (myenteric nerve plexus) and Proximal half of duodenum (myenteric nerve plexus). It is described in SAWG model of the pancreas model.
(intersection-of-part-of myenteric nerve plexus Proximal half of duodenum) (intersection-of-part-of pyloric antrum myenteric nerve plexus) (with-axons-in (intersection-of-part-of gastrointestinal system serosa Proximal half of duodenum) (intersection-of-part-of pancreatic acinus basement membrane of epithelium) (intersection-of-part-of pancreatic acinus connective tissue) (intersection-of-part-of pyloric antrum gastrointestinal system serosa) (intersection-of-part-of pyloric antrum stomach smooth muscle outer longitudinal layer) (intersection-of-part-of stomach smooth muscle outer longitudinal layer Proximal half of duodenum)) (with-axon-presynaptic-element-in (intersection-of-part-of pancreatic acinus Epithelium of pancreatic acinus) intrapancreatic ganglia) (projecting-onto ilxtr:neuron-type-pancr-3) neuron (implies Enteric)
from pyloric antrum (myenteric nerve plexus) to intrapancreatic ganglia via pyloric antrum (stomach smooth muscle outer longitudinal layer) via pyloric antrum (gastrointestinal system serosa) via pancreatic acinus (connective tissue) via intrapancreatic ganglia from Proximal half of duodenum (myenteric nerve plexus) to pancreatic acinus (Epithelium of pancreatic acinus) via Proximal half of duodenum (stomach smooth muscle outer longitudinal layer) via Proximal half of duodenum (gastrointestinal system serosa) via pancreatic acinus (connective tissue) via pancreatic acinus (basement membrane of epithelium) from pyloric antrum (myenteric nerve plexus) to pancreatic acinus (Epithelium of pancreatic acinus) via pyloric antrum (stomach smooth muscle outer longitudinal layer) via pyloric antrum (gastrointestinal system serosa) via pancreatic acinus (connective tissue) via pancreatic acinus (basement membrane of epithelium) from Proximal half of duodenum (myenteric nerve plexus) to intrapancreatic ganglia via Proximal half of duodenum (stomach smooth muscle outer longitudinal layer) via Proximal half of duodenum (gastrointestinal system serosa) via pancreatic acinus (connective tissue) via intrapancreatic ganglia
10/30/25 [ST]: This ApiNATOMY population had a colocated dendrite with the soma. This has been removed. There's still wonkiness with the modeling, though I see loops. Should review.\nupdated this model to match the SVG https://raw.githubusercontent.com/open-physiology/apinatomy-models/refs/heads/master/models/pancreas/docs/pancreas.svg), not Fahim's (https://sckan-partial-order.netlify.app/) diagram (it's missing axioms):\nadded dendrites to same location as somas.\nQUESTION: The ApiNATOMY model shows all sorts of vias (from the duodenum and antrum) but I can't see these in the ApiNATOMY-to-NPO sheet. Monique - can you check the dendrites/dendrite rule here?\nChangelog: Added proximal half of duodenum to anatomical entities in order to create a region/layer pair; there is a ILX term for myenteric nerve plexus of gastric antrum, however, so didn't create a region (layer) pair. Is there a future benefit to modeling the myenteric plexus as region layer pairs instead?
serous membrane of gastrointestinal system
dorsal motor nucleus of vagus nerve to intrapancreatic ganglia via vagus nerve via pancreatic acinus
A parasympathetic pre-ganglionic connection goes from dorsal motor nucleus of vagus nerve to intrapancreatic ganglia via medulla oblongata via vagus X nerve trunk via pancreatic acinus (connective tissue). This connection projects from the dorsal motor nucleus of vagus nerve. It is described in SAWG model of the pancreas model.
dorsal motor nucleus of vagus nerve (with-axons-in (intersection-of-part-of pancreatic acinus connective tissue) bulb vagus X nerve trunk) (with-axon-presynaptic-element-in intrapancreatic ganglia) (projecting-onto ilxtr:neuron-type-pancr-3) neuron (implies Parasympathetic Pre-Ganglionic)
from dorsal motor nucleus of vagus nerve to intrapancreatic ganglia via medulla oblongata via vagus X nerve trunk via pancreatic acinus (connective tissue)
10/30/25 {[ST]: This ApiNATOMY population had a colocated dendrite with the soma. This has been removed.\ncorrect partial order identifiers to match apinatomy, explicit medulla and vagus trunk instead of more generic vagus\nQuestion: need to add dendrite/sensory terminals? \nChangelog: added pancreatic acinus (connective tissue) as region(layer) pair since Composer ingested it, but it isn't in the ApiNATOMY to NPO sheet.\nChangelog: added vagus nerve as a via. no region(layer) pairs here?
rexed lamina VII of L3-L4 segment of spinal cord to inferior mesenteric ganglion via white matter of L3-L4 spinal cord via ventral root of L3-L4 spinal cord segment via white communicating ramus of L3-L4 via L3-L4 sympathetic lumbar ganglion via L3-L4 gray communicating ramus via lumbar splanchnic nerve
A sympathetic pre-ganglionic connection goes from L3 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to inferior mesenteric ganglion via L3 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the third lumbar spinal cord segment via white communicating ramus of third lumbar spinal nerve via Third lumbar ganglion via gray communicating ramus of third lumbar nerve via lumbar splanchnic nerve; from L4 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to inferior mesenteric ganglion via L4 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the fourth lumbar spinal cord segment via White communicating ramus of fourth lumbar anterior ramus via Fourth lumbar ganglion via gray communicating ramus of fourth lumbar nerve via lumbar splanchnic nerve. This connection projects from the L4 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) and L3 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord). It is described in SAWG model of descending colon model.
(intersection-of-part-of L3 segment of lumbar spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of L4 segment of lumbar spinal cord lamina VII of gray matter of spinal cord) (with-axons-in (intersection-of-part-of white matter of spinal cord L3 segment of lumbar spinal cord) (intersection-of-part-of white matter of spinal cord L4 segment of lumbar spinal cord) L3 sympathetic chain ganglion L4 sympathetic chain ganglion White communicating ramus of fourth lumbar anterior ramus gray communicating ramus of fourth lumbar nerve gray communicating ramus of third lumbar nerve lumbar splanchnic nerve ventral root of the fourth lumbar spinal cord segment ventral root of the third lumbar spinal cord segment white communicating ramus of third lumbar spinal nerve) (with-axon-presynaptic-element-in inferior mesenteric ganglion) (projecting-onto ilxtr:neuron-type-sdcol-d ilxtr:neuron-type-sdcol-f ilxtr:neuron-type-sdcol-g ilxtr:neuron-type-sdcol-h) neuron (implies Sympathetic Pre-Ganglionic)
from L3 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to inferior mesenteric ganglion via L3 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the third lumbar spinal cord segment via white communicating ramus of third lumbar spinal nerve via Third lumbar ganglion via gray communicating ramus of third lumbar nerve via lumbar splanchnic nerve from L4 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) to inferior mesenteric ganglion via L4 segment of lumbar spinal cord (white matter of spinal cord) via ventral root of the fourth lumbar spinal cord segment via White communicating ramus of fourth lumbar anterior ramus via Fourth lumbar ganglion via gray communicating ramus of fourth lumbar nerve via lumbar splanchnic nerve
add missing forward connections\nthis partial order does not match the apinatomy model, in so far as the L3 axon at least also connects to the L4 white ramus, there is another connection in the diagram that would seem to show the L3 axon going to lumspl after L3 gray ramus, but the diagram also appears to show that as the L4 axon going directly to lumspl without passing through any rami, which is extremely suspect, leaving the population as is however since it is axiomatically consistent with the more complex apinat partial order\nChangelog: Removed forward connections.\nChangelog: Adjusted partial order; consolidated sympathetic and pre-ganglionic axioms.
inferior mesenteric ganglion to Peyer's patch via lumbar colonic nerve via serosa of descending colon via longitudinal muscle layer of descending colon via myenteric nerve plexus of descending colon via circular muscle layer of descending colon via submucosal nerve plexus of descending colon via lamina propria mucosae of descending colon
A sympathetic post-ganglionic connection goes from inferior mesenteric ganglion to Peyer's patch via lumbar colonic nerve via descending colon (Serosa of descending colon) via descending colon (Longitudinal muscle layer of descending colon) via descending colon (Myenteric nerve plexus of descending colon) via descending colon (Circular muscle layer of descending colon) via descending colon (Submucosal nerve plexus of descending colon) via descending colon (Lamina propria mucosae of descending colon). This connection projects from the inferior mesenteric ganglion. It is described in SAWG model of descending colon model.
inferior mesenteric ganglion (with-axons-in (intersection-of-part-of descending colon Circular muscle layer of descending colon) (intersection-of-part-of descending colon Lamina propria mucosae of descending colon) (intersection-of-part-of descending colon Longitudinal muscle layer of descending colon) (intersection-of-part-of descending colon Myenteric nerve plexus of descending colon) (intersection-of-part-of descending colon Serosa of descending colon) (intersection-of-part-of descending colon Submucosal nerve plexus of descending colon) lumbar colonic nerve) (with-axon-presynaptic-element-in Peyer's patch) neuron (implies Sympathetic Post-Ganglionic)
from inferior mesenteric ganglion to Peyer's patch via lumbar colonic nerve via descending colon (Serosa of descending colon) via descending colon (Longitudinal muscle layer of descending colon) via descending colon (Myenteric nerve plexus of descending colon) via descending colon (Circular muscle layer of descending colon) via descending colon (Submucosal nerve plexus of descending colon) via descending colon (Lamina propria mucosae of descending colon)
inferior mesenteric ganglion to arteriole wall in lamina propria of mucosa of descending colon or arteriole wall in longitudinal muscle layer of descending colon or arteriole wall in myenteric nerve plexus of descending colon or arteriole wall in circular muscle layer of descending colon or arteriole wall in submucous nerve plexus of descending colon via arteriole wall in lamina propria of mucosa of descending colon via lumbar colonic nerve
A sympathetic post-ganglionic connection goes from inferior mesenteric ganglion to Arteriole in submucous nerve plexus of descending colon (wall of blood vessel) via lumbar colonic nerve via Arteriole in serosa of descending colon (wall of blood vessel) via Arteriole in longitudinal muscle layer of descending colon (wall of blood vessel) via Arteriole in myenteric nerve plexus of descending colon (wall of blood vessel) via Arteriole in circular muscle layer of descending colon (wall of blood vessel) via Arteriole in submucous nerve plexus of descending colon (wall of blood vessel); from inferior mesenteric ganglion to Arteriole in myenteric nerve plexus of descending colon (wall of blood vessel) via lumbar colonic nerve via Arteriole in serosa of descending colon (wall of blood vessel) via Arteriole in longitudinal muscle layer of descending colon (wall of blood vessel) via Arteriole in myenteric nerve plexus of descending colon (wall of blood vessel); from inferior mesenteric ganglion to Arteriole in circular muscle layer of descending colon (wall of blood vessel) via lumbar colonic nerve via Arteriole in serosa of descending colon (wall of blood vessel) via Arteriole in longitudinal muscle layer of descending colon (wall of blood vessel) via Arteriole in myenteric nerve plexus of descending colon (wall of blood vessel) via Arteriole in circular muscle layer of descending colon (wall of blood vessel); from inferior mesenteric ganglion to Arteriole in serosa of descending colon (wall of blood vessel) via lumbar colonic nerve via Arteriole in serosa of descending colon (wall of blood vessel); from inferior mesenteric ganglion to Arteriole in longitudinal muscle layer of descending colon (wall of blood vessel) via lumbar colonic nerve via Arteriole in serosa of descending colon (wall of blood vessel) via Arteriole in longitudinal muscle layer of descending colon (wall of blood vessel); from inferior mesenteric ganglion to Arteriole in lamina propria of mucosa of descending colon (wall of blood vessel) via lumbar colonic nerve via Arteriole in serosa of descending colon (wall of blood vessel) via Arteriole in longitudinal muscle layer of descending colon (wall of blood vessel) via Arteriole in myenteric nerve plexus of descending colon (wall of blood vessel) via Arteriole in circular muscle layer of descending colon (wall of blood vessel) via Arteriole in submucous nerve plexus of descending colon (wall of blood vessel) via Arteriole in lamina propria of mucosa of descending colon (wall of blood vessel). This connection projects from the inferior mesenteric ganglion. It is described in SAWG model of descending colon model.
inferior mesenteric ganglion (with-axon-in lumbar colonic nerve) (with-axon-presynaptic-element-in (intersection-of-part-of wall of blood vessel Arteriole in circular muscle layer of descending colon) (intersection-of-part-of wall of blood vessel Arteriole in lamina propria of mucosa of descending colon) (intersection-of-part-of wall of blood vessel Arteriole in longitudinal muscle layer of descending colon) (intersection-of-part-of wall of blood vessel Arteriole in myenteric nerve plexus of descending colon) (intersection-of-part-of wall of blood vessel Arteriole in serosa of descending colon) (intersection-of-part-of wall of blood vessel Arteriole in submucous nerve plexus of descending colon)) neuron (implies Sympathetic Post-Ganglionic)
from inferior mesenteric ganglion to Arteriole in submucous nerve plexus of descending colon (wall of blood vessel) via lumbar colonic nerve via Arteriole in serosa of descending colon (wall of blood vessel) via Arteriole in longitudinal muscle layer of descending colon (wall of blood vessel) via Arteriole in myenteric nerve plexus of descending colon (wall of blood vessel) via Arteriole in circular muscle layer of descending colon (wall of blood vessel) via Arteriole in submucous nerve plexus of descending colon (wall of blood vessel) from inferior mesenteric ganglion to Arteriole in myenteric nerve plexus of descending colon (wall of blood vessel) via lumbar colonic nerve via Arteriole in serosa of descending colon (wall of blood vessel) via Arteriole in longitudinal muscle layer of descending colon (wall of blood vessel) via Arteriole in myenteric nerve plexus of descending colon (wall of blood vessel) from inferior mesenteric ganglion to Arteriole in circular muscle layer of descending colon (wall of blood vessel) via lumbar colonic nerve via Arteriole in serosa of descending colon (wall of blood vessel) via Arteriole in longitudinal muscle layer of descending colon (wall of blood vessel) via Arteriole in myenteric nerve plexus of descending colon (wall of blood vessel) via Arteriole in circular muscle layer of descending colon (wall of blood vessel) from inferior mesenteric ganglion to Arteriole in serosa of descending colon (wall of blood vessel) via lumbar colonic nerve via Arteriole in serosa of descending colon (wall of blood vessel) from inferior mesenteric ganglion to Arteriole in longitudinal muscle layer of descending colon (wall of blood vessel) via lumbar colonic nerve via Arteriole in serosa of descending colon (wall of blood vessel) via Arteriole in longitudinal muscle layer of descending colon (wall of blood vessel) from inferior mesenteric ganglion to Arteriole in lamina propria of mucosa of descending colon (wall of blood vessel) via lumbar colonic nerve via Arteriole in serosa of descending colon (wall of blood vessel) via Arteriole in longitudinal muscle layer of descending colon (wall of blood vessel) via Arteriole in myenteric nerve plexus of descending colon (wall of blood vessel) via Arteriole in circular muscle layer of descending colon (wall of blood vessel) via Arteriole in submucous nerve plexus of descending colon (wall of blood vessel) via Arteriole in lamina propria of mucosa of descending colon (wall of blood vessel)
10/30/2025 [ST]: This ApiNATOMY population has an axons colocated with axon terminals. Does this need to be re-evaluated?\nChanged the via and added the layer (wall of blood vessel) in them because it was showing error.\nSdcol-f is correct here, not in the https://sckan-partial-order.netlify.app/.\nProbably over-engineered this, please review to see whether the vias are actually necessary? Additionally, removed the arteriole in lamina propria of descending colon (blood) because i don't think that's correct. All other terminals for this population were in the wall of the blood vessel. I suspect this is what the destination for population scdol o should be also (wall of blood vessel) not (blood).
inferior mesenteric ganglion to myenteric nerve plexus of descending colon via lumbar colonic nerve via serosa of descending colon via longitudinal muscle layer of descending colon
A sympathetic post-ganglionic connection goes from inferior mesenteric ganglion to descending colon (Myenteric nerve plexus of descending colon) via lumbar colonic nerve via descending colon (Serosa of descending colon) via descending colon (Longitudinal muscle layer of descending colon). This connection projects from the inferior mesenteric ganglion. It is described in SAWG model of descending colon model.
inferior mesenteric ganglion (with-axons-in (intersection-of-part-of descending colon Longitudinal muscle layer of descending colon) (intersection-of-part-of descending colon Serosa of descending colon) lumbar colonic nerve) (with-axon-presynaptic-element-in (intersection-of-part-of descending colon Myenteric nerve plexus of descending colon)) (projecting-onto ilxtr:neuron-type-sdcol-m) neuron (implies Sympathetic Post-Ganglionic)
from inferior mesenteric ganglion to descending colon (Myenteric nerve plexus of descending colon) via lumbar colonic nerve via descending colon (Serosa of descending colon) via descending colon (Longitudinal muscle layer of descending colon)
inferior mesenteric ganglion to submucosal nerve plexus of descending colon via lumbar colonic nerve via serosa of descending colon via longitudinal muscle layer of descending colon via myenteric nerve plexus of descending colon via circular muscle layer of descending colon
A sympathetic post-ganglionic connection goes from inferior mesenteric ganglion to descending colon (Submucosal nerve plexus of descending colon) via lumbar colonic nerve via descending colon (Serosa of descending colon) via descending colon (Longitudinal muscle layer of descending colon) via descending colon (Myenteric nerve plexus of descending colon) via descending colon (Circular muscle layer of descending colon). This connection projects from the inferior mesenteric ganglion. It is described in SAWG model of descending colon model.
inferior mesenteric ganglion (with-axons-in (intersection-of-part-of descending colon Circular muscle layer of descending colon) (intersection-of-part-of descending colon Longitudinal muscle layer of descending colon) (intersection-of-part-of descending colon Myenteric nerve plexus of descending colon) (intersection-of-part-of descending colon Serosa of descending colon) lumbar colonic nerve) (with-axon-presynaptic-element-in (intersection-of-part-of descending colon Submucosal nerve plexus of descending colon)) (projecting-onto ilxtr:neuron-type-sdcol-n) neuron (implies Sympathetic Post-Ganglionic)
from inferior mesenteric ganglion to descending colon (Submucosal nerve plexus of descending colon) via lumbar colonic nerve via descending colon (Serosa of descending colon) via descending colon (Longitudinal muscle layer of descending colon) via descending colon (Myenteric nerve plexus of descending colon) via descending colon (Circular muscle layer of descending colon)
T13-L5 DRG to rexed laminae I or II or V or VII or X of T13-L5 or to following layers of descending colon: serosa via lumbar colonic nerve; myenteric plexus via lumbar colonic nerve via serosa via Longitudinal muscle layer; to Lamina propria mucosae via lumbar colonic nerve via Serosa via Longitudinal muscle layer via Myenteric nerve plexus via Circular muscle layer via submucosal nerve plexus; to Submucosal nerve plexus via lumbar colonic nerve via Serosa via Longitudinal muscle layer via Myenteric nerve plexus via Circular muscle layer
A connection goes from fifth lumbar dorsal root ganglion or first lumbar dorsal root ganglion or fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion or thirteenth thoracic dorsal root ganglion to descending colon (Myenteric nerve plexus of descending colon) via lumbar colonic nerve via descending colon (Serosa of descending colon) via descending colon (Longitudinal muscle layer of descending colon) via descending colon (Myenteric nerve plexus of descending colon); from fifth lumbar dorsal root ganglion or first lumbar dorsal root ganglion or fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion or thirteenth thoracic dorsal root ganglion to descending colon (Lamina propria mucosae of descending colon) via lumbar colonic nerve via descending colon (Serosa of descending colon) via descending colon (Longitudinal muscle layer of descending colon) via descending colon (Myenteric nerve plexus of descending colon) via descending colon (Circular muscle layer of descending colon) via descending colon (Submucosal nerve plexus of descending colon) via descending colon (Lamina propria mucosae of descending colon); from fourth lumbar dorsal root ganglion to L4 segment of lumbar spinal cord (lamina I of gray matter of spinal cord) or L4 segment of lumbar spinal cord (lamina V of gray matter of spinal cord) or L4 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) or L4 segment of lumbar spinal cord (spinal cord gray commissure) or L4 segment of lumbar spinal cord (substantia gelatinosa) via L4 segment of lumbar spinal cord (white matter of spinal cord); from fifth lumbar dorsal root ganglion or first lumbar dorsal root ganglion or fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion or thirteenth thoracic dorsal root ganglion to descending colon (Serosa of descending colon) via lumbar colonic nerve via descending colon (Serosa of descending colon); from fifth lumbar dorsal root ganglion or first lumbar dorsal root ganglion or fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion or thirteenth thoracic dorsal root ganglion to descending colon (Submucosal nerve plexus of descending colon) via lumbar colonic nerve via descending colon (Serosa of descending colon) via descending colon (Longitudinal muscle layer of descending colon) via descending colon (Myenteric nerve plexus of descending colon) via descending colon (Circular muscle layer of descending colon) via descending colon (Submucosal nerve plexus of descending colon); from second lumbar dorsal root ganglion to L2 segment of lumbar spinal cord (lamina I of gray matter of spinal cord) or L2 segment of lumbar spinal cord (lamina V of gray matter of spinal cord) or L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) or L2 segment of lumbar spinal cord (spinal cord gray commissure) or L2 segment of lumbar spinal cord (substantia gelatinosa) via L2 segment of lumbar spinal cord (white matter of spinal cord); from thirteenth thoracic dorsal root ganglion to Thirteenth thoracic spinal cord segment (lamina I of gray matter of spinal cord) or Thirteenth thoracic spinal cord segment (lamina V of gray matter of spinal cord) or Thirteenth thoracic spinal cord segment (lamina VII of gray matter of spinal cord) or Thirteenth thoracic spinal cord segment (spinal cord gray commissure) or Thirteenth thoracic spinal cord segment (substantia gelatinosa) via Thirteenth thoracic spinal cord segment (white matter of spinal cord); from fifth lumbar dorsal root ganglion to L5 segment of lumbar spinal cord (lamina I of gray matter of spinal cord) or L5 segment of lumbar spinal cord (lamina V of gray matter of spinal cord) or L5 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) or L5 segment of lumbar spinal cord (spinal cord gray commissure) or L5 segment of lumbar spinal cord (substantia gelatinosa) via L5 segment of lumbar spinal cord (white matter of spinal cord); from first lumbar dorsal root ganglion to L1 segment of lumbar spinal cord (lamina I of gray matter of spinal cord) or L1 segment of lumbar spinal cord (lamina V of gray matter of spinal cord) or L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) or L1 segment of lumbar spinal cord (spinal cord gray commissure) or L1 segment of lumbar spinal cord (substantia gelatinosa) via L1 segment of lumbar spinal cord (white matter of spinal cord); from third lumbar dorsal root ganglion to L3 segment of lumbar spinal cord (lamina I of gray matter of spinal cord) or L3 segment of lumbar spinal cord (lamina V of gray matter of spinal cord) or L3 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) or L3 segment of lumbar spinal cord (spinal cord gray commissure) or L3 segment of lumbar spinal cord (substantia gelatinosa) via L3 segment of lumbar spinal cord (white matter of spinal cord). This sensory connection projects from the thirteenth thoracic dorsal root ganglion, fourth lumbar dorsal root ganglion, fifth lumbar dorsal root ganglion, first lumbar dorsal root ganglion, second lumbar dorsal root ganglion and third lumbar dorsal root ganglion. It is described in SAWG model of descending colon model.
This population has co-located axons and axon terminals. this is because the axon traverses through layers, with some layers also having terminations. To be revisited when we have time for this modeling question.
fifth lumbar dorsal root ganglion first lumbar dorsal root ganglion fourth lumbar dorsal root ganglion second lumbar dorsal root ganglion third lumbar dorsal root ganglion thirteenth thoracic dorsal root ganglion (with-axons-in (intersection-of-part-of white matter of spinal cord L1 segment of lumbar spinal cord) (intersection-of-part-of white matter of spinal cord L2 segment of lumbar spinal cord) (intersection-of-part-of white matter of spinal cord L3 segment of lumbar spinal cord) (intersection-of-part-of white matter of spinal cord L4 segment of lumbar spinal cord) (intersection-of-part-of white matter of spinal cord L5 segment of lumbar spinal cord) (intersection-of-part-of white matter of spinal cord T13 segment of thoracic spinal cord)) (with-axon-presynaptic-element-in (intersection-of-part-of L1 segment of lumbar spinal cord lamina V of gray matter of spinal cord) (intersection-of-part-of L1 segment of lumbar spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of L2 segment of lumbar spinal cord lamina V of gray matter of spinal cord) (intersection-of-part-of L2 segment of lumbar spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of L3 segment of lumbar spinal cord lamina V of gray matter of spinal cord) (intersection-of-part-of L3 segment of lumbar spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of L4 segment of lumbar spinal cord lamina V of gray matter of spinal cord) (intersection-of-part-of L4 segment of lumbar spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of L5 segment of lumbar spinal cord lamina V of gray matter of spinal cord) (intersection-of-part-of L5 segment of lumbar spinal cord lamina VII of gray matter of spinal cord) (intersection-of-part-of lamina I of gray matter of spinal cord L1 segment of lumbar spinal cord) (intersection-of-part-of lamina I of gray matter of spinal cord L2 segment of lumbar spinal cord) (intersection-of-part-of lamina I of gray matter of spinal cord L3 segment of lumbar spinal cord) (intersection-of-part-of lamina I of gray matter of spinal cord L4 segment of lumbar spinal cord) (intersection-of-part-of lamina I of gray matter of spinal cord L5 segment of lumbar spinal cord) (intersection-of-part-of lamina I of gray matter of spinal cord T13 segment of thoracic spinal cord) (intersection-of-part-of lamina V of gray matter of spinal cord T13 segment of thoracic spinal cord) (intersection-of-part-of lamina VII of gray matter of spinal cord T13 segment of thoracic spinal cord) (intersection-of-part-of spinal cord gray commissure L1 segment of lumbar spinal cord) (intersection-of-part-of spinal cord gray commissure L2 segment of lumbar spinal cord) (intersection-of-part-of spinal cord gray commissure L3 segment of lumbar spinal cord) (intersection-of-part-of spinal cord gray commissure L4 segment of lumbar spinal cord) (intersection-of-part-of spinal cord gray commissure L5 segment of lumbar spinal cord) (intersection-of-part-of spinal cord gray commissure T13 segment of thoracic spinal cord) (intersection-of-part-of substantia gelatinosa L1 segment of lumbar spinal cord) (intersection-of-part-of substantia gelatinosa L2 segment of lumbar spinal cord) (intersection-of-part-of substantia gelatinosa L3 segment of lumbar spinal cord) (intersection-of-part-of substantia gelatinosa L4 segment of lumbar spinal cord) (intersection-of-part-of substantia gelatinosa L5 segment of lumbar spinal cord) (intersection-of-part-of substantia gelatinosa T13 segment of thoracic spinal cord)) (implies sensory neuron)
from fifth lumbar dorsal root ganglion or first lumbar dorsal root ganglion or fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion or thirteenth thoracic dorsal root ganglion to descending colon (Myenteric nerve plexus of descending colon) via lumbar colonic nerve via descending colon (Serosa of descending colon) via descending colon (Longitudinal muscle layer of descending colon) via descending colon (Myenteric nerve plexus of descending colon) from fifth lumbar dorsal root ganglion or first lumbar dorsal root ganglion or fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion or thirteenth thoracic dorsal root ganglion to descending colon (Lamina propria mucosae of descending colon) via lumbar colonic nerve via descending colon (Serosa of descending colon) via descending colon (Longitudinal muscle layer of descending colon) via descending colon (Myenteric nerve plexus of descending colon) via descending colon (Circular muscle layer of descending colon) via descending colon (Submucosal nerve plexus of descending colon) via descending colon (Lamina propria mucosae of descending colon) from fourth lumbar dorsal root ganglion to L4 segment of lumbar spinal cord (lamina I of gray matter of spinal cord) or L4 segment of lumbar spinal cord (lamina V of gray matter of spinal cord) or L4 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) or L4 segment of lumbar spinal cord (spinal cord gray commissure) or L4 segment of lumbar spinal cord (substantia gelatinosa) via L4 segment of lumbar spinal cord (white matter of spinal cord) from fifth lumbar dorsal root ganglion or first lumbar dorsal root ganglion or fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion or thirteenth thoracic dorsal root ganglion to descending colon (Serosa of descending colon) via lumbar colonic nerve via descending colon (Serosa of descending colon) from fifth lumbar dorsal root ganglion or first lumbar dorsal root ganglion or fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion or thirteenth thoracic dorsal root ganglion to descending colon (Submucosal nerve plexus of descending colon) via lumbar colonic nerve via descending colon (Serosa of descending colon) via descending colon (Longitudinal muscle layer of descending colon) via descending colon (Myenteric nerve plexus of descending colon) via descending colon (Circular muscle layer of descending colon) via descending colon (Submucosal nerve plexus of descending colon) from second lumbar dorsal root ganglion to L2 segment of lumbar spinal cord (lamina I of gray matter of spinal cord) or L2 segment of lumbar spinal cord (lamina V of gray matter of spinal cord) or L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) or L2 segment of lumbar spinal cord (spinal cord gray commissure) or L2 segment of lumbar spinal cord (substantia gelatinosa) via L2 segment of lumbar spinal cord (white matter of spinal cord) from thirteenth thoracic dorsal root ganglion to Thirteenth thoracic spinal cord segment (lamina I of gray matter of spinal cord) or Thirteenth thoracic spinal cord segment (lamina V of gray matter of spinal cord) or Thirteenth thoracic spinal cord segment (lamina VII of gray matter of spinal cord) or Thirteenth thoracic spinal cord segment (spinal cord gray commissure) or Thirteenth thoracic spinal cord segment (substantia gelatinosa) via Thirteenth thoracic spinal cord segment (white matter of spinal cord) from fifth lumbar dorsal root ganglion to L5 segment of lumbar spinal cord (lamina I of gray matter of spinal cord) or L5 segment of lumbar spinal cord (lamina V of gray matter of spinal cord) or L5 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) or L5 segment of lumbar spinal cord (spinal cord gray commissure) or L5 segment of lumbar spinal cord (substantia gelatinosa) via L5 segment of lumbar spinal cord (white matter of spinal cord) from first lumbar dorsal root ganglion to L1 segment of lumbar spinal cord (lamina I of gray matter of spinal cord) or L1 segment of lumbar spinal cord (lamina V of gray matter of spinal cord) or L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) or L1 segment of lumbar spinal cord (spinal cord gray commissure) or L1 segment of lumbar spinal cord (substantia gelatinosa) via L1 segment of lumbar spinal cord (white matter of spinal cord) from third lumbar dorsal root ganglion to L3 segment of lumbar spinal cord (lamina I of gray matter of spinal cord) or L3 segment of lumbar spinal cord (lamina V of gray matter of spinal cord) or L3 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord) or L3 segment of lumbar spinal cord (spinal cord gray commissure) or L3 segment of lumbar spinal cord (substantia gelatinosa) via L3 segment of lumbar spinal cord (white matter of spinal cord)
no changes made\nThis population has co-located axons and axon terminals. this is because the axon traverses through layers, with some layers also having terminations. To be revisited when we have time for this modeling question.\nremoved unresolving ILX URI from provenance\nChangelog: adjusted partial order to add missing traversals, should the afferent terminals attach to the region before or where they terminate?
aggregated lymphoid follicle of intestine
myenteric nerve plexus of descending colon to lamina propria mucosae of descending colon or submucosal nerve plexus of descending colon via circular muscle layer of descending colon via submucosal nerve plexus of descending colon
A enteric connection goes from descending colon (Myenteric nerve plexus of descending colon) to descending colon (Myenteric nerve plexus of descending colon); from descending colon (Myenteric nerve plexus of descending colon) to descending colon (Lamina propria mucosae of descending colon) or descending colon (Submucosal nerve plexus of descending colon) via descending colon (Circular muscle layer of descending colon) via descending colon (Submucosal nerve plexus of descending colon). This connection projects from the descending colon (Myenteric nerve plexus of descending colon). It is described in SAWG model of descending colon model.
(intersection-of-part-of descending colon Myenteric nerve plexus of descending colon) (with-axon-in (intersection-of-part-of descending colon Circular muscle layer of descending colon)) (with-axon-presynaptic-element-in (intersection-of-part-of descending colon Myenteric nerve plexus of descending colon)) neuron (implies Enteric)
from descending colon (Myenteric nerve plexus of descending colon) to descending colon (Myenteric nerve plexus of descending colon) from descending colon (Myenteric nerve plexus of descending colon) to descending colon (Lamina propria mucosae of descending colon) or descending colon (Submucosal nerve plexus of descending colon) via descending colon (Circular muscle layer of descending colon) via descending colon (Submucosal nerve plexus of descending colon)
10/30/2025 [ST]: This ApiNATOMY population has a axon colocated with the soma, creating a loop. This has needs to evaluated.\nAccording to the turtle file https://github.com/SciCrunch/NIF-Ontology/blob/dev/ttl/generated/neurons/apinat-pops-more.ttl this neuron is only "enteric". It had attributed here the "intrinsic" phenotype, which I dont see in the turtle file so I deleted it.\nConfirmed with Bernard that there is an axon terminal in myenteric plexus; changes made.\nQuestion for Bernard & Tom: do we create an axon terminal in the myenteric plexus?
submucosal nerve plexus of descending colon to myenteric nerve plexus of descending colon via circular muscle layer of descending colon
A enteric connection goes from descending colon (Submucosal nerve plexus of descending colon) to descending colon (Lamina propria mucosae of descending colon) or descending colon (Submucosal nerve plexus of descending colon); from descending colon (Submucosal nerve plexus of descending colon) to descending colon (Myenteric nerve plexus of descending colon) via descending colon (Circular muscle layer of descending colon). This connection projects from the descending colon (Submucosal nerve plexus of descending colon). It is described in SAWG model of descending colon model.
(intersection-of-part-of descending colon Submucosal nerve plexus of descending colon) (with-axon-in (intersection-of-part-of descending colon Circular muscle layer of descending colon)) (with-axon-presynaptic-element-in (intersection-of-part-of descending colon Myenteric nerve plexus of descending colon) (intersection-of-part-of descending colon Submucosal nerve plexus of descending colon)) (projecting-onto ilxtr:neuron-type-sdcol-o ilxtr:neuron-type-sdcol-p) neuron (implies Enteric)
from descending colon (Submucosal nerve plexus of descending colon) to descending colon (Lamina propria mucosae of descending colon) or descending colon (Submucosal nerve plexus of descending colon) from descending colon (Submucosal nerve plexus of descending colon) to descending colon (Myenteric nerve plexus of descending colon) via descending colon (Circular muscle layer of descending colon)
10/30/2025 [ST]: This ApiNATOMY population has an axon terminal colocated with the soma. Does this need to be reevaluated?\nAccording to turtle file https://github.com/SciCrunch/NIF-Ontology/blob/dev/ttl/generated/neurons/apinat-pops-more.ttl this is only "enteric". It has attributed "intrinsic" phenotype which I dont see in the turtle file so I delete it.
myenteric nerve plexus of descending colon to myenteric nerve plexus of descending colon
A enteric connection goes from descending colon (Myenteric nerve plexus of descending colon) to descending colon (Myenteric nerve plexus of descending colon). This connection projects from the descending colon (Myenteric nerve plexus of descending colon). It is described in SAWG model of descending colon model.
(intersection-of-part-of descending colon Myenteric nerve plexus of descending colon) (with-axon-presynaptic-element-in (intersection-of-part-of descending colon Myenteric nerve plexus of descending colon)) (projecting-onto ilxtr:neuron-type-sdcol-j ilxtr:neuron-type-sdcol-j-prime) neuron (implies Enteric)
from descending colon (Myenteric nerve plexus of descending colon) to descending colon (Myenteric nerve plexus of descending colon)
10/30/2025 [ST]: This ApiNATOMY population had an axon terminal colocated with the soma. Does this need to be re-evaluated for modeling (loops?)\nChangelog: added enteric phenotype
myenteric nerve plexus of descending colon to longitudinal muscle layer of descending colon
A enteric connection goes from descending colon (Myenteric nerve plexus of descending colon) to descending colon (Longitudinal muscle layer of descending colon). This posterior projecting motor connection projects from the descending colon (Myenteric nerve plexus of descending colon). It is described in SAWG model of descending colon model.
10/30/2025 [ST]: Added functional circuit role: excitatory to be consistent with ApiNATOMY. remove posterior projecting.
(intersection-of-part-of descending colon Myenteric nerve plexus of descending colon) (with-axon-presynaptic-element-in (intersection-of-part-of descending colon Longitudinal muscle layer of descending colon)) (projecting-to Posterior projecting) (implies Enteric motor neuron)
from descending colon (Myenteric nerve plexus of descending colon) to descending colon (Longitudinal muscle layer of descending colon)
Posterior projecting MUST be present on this population otherwise it is indistinguishable from sdcol l.\nAdded functional circuit role: excitatory to be consistent with ApiNATOMY. remove posterior projecting. need to revisit that decision.\nadd projection phenotype\nFollow-up with Tom : Posterior and Anterior Projection is provided by Tom - find out why this is appearing? Bernard indicates that's not relevant to ANS innervation; so not sure if this is misattributed in Composer or SCKAN.\nComposer is showing "posterior projecting" as a projection phenotype. is that incorrect?\nComposerBug: need to add excitatory and inhibitory phenotype to UI
myenteric nerve plexus of descending colon to circular muscle layer of descending colon
A enteric connection goes from descending colon (Myenteric nerve plexus of descending colon) to descending colon (Circular muscle layer of descending colon). This posterior projecting motor connection projects from the descending colon (Myenteric nerve plexus of descending colon). It is described in SAWG model of descending colon model.
10/30/25 [ST]: Added functional circuit role: excitatory to be consistent with ApiNATOMY. remove posterior projecting.
(intersection-of-part-of descending colon Myenteric nerve plexus of descending colon) (with-axon-presynaptic-element-in (intersection-of-part-of descending colon Circular muscle layer of descending colon)) (projecting-to Posterior projecting) (implies Enteric motor neuron)
from descending colon (Myenteric nerve plexus of descending colon) to descending colon (Circular muscle layer of descending colon)
MUST include posterior projecting phenotype otherwise it cannot be distinguished from sdcol l-prime.\nremoved posterior projecting\n10/30/25 [ST]: Added functional circuit role: excitatory to be consistent with ApiNATOMY. remove posterior projecting.\nadd projection phenotype\nChangelog: added enteric \nComposer added "posterior projecting" for projection laterality; is that correct? \nComposerBug: need to add excitatory/inhibitory to UI.
projects in the posterior direction of the housing structure
(intersection-of-part-of descending colon Myenteric nerve plexus of descending colon) (with-axon-presynaptic-element-in (intersection-of-part-of descending colon Myenteric nerve plexus of descending colon)) (projecting-onto ilxtr:neuron-type-sdcol-l ilxtr:neuron-type-sdcol-l-prime) neuron (implies Enteric)
Changelog: removed forward populations - inappropriate add by Composer.
A enteric connection goes from descending colon (Myenteric nerve plexus of descending colon) to descending colon (Longitudinal muscle layer of descending colon). This anterior projecting motor connection projects from the descending colon (Myenteric nerve plexus of descending colon). It is described in SAWG model of descending colon model.
10/30/25 [ST]: Added inhibitory as functional circuit role, and removed anterior projection phenotype to be consistent with ApiNATOMY.
(intersection-of-part-of descending colon Myenteric nerve plexus of descending colon) (with-axon-presynaptic-element-in (intersection-of-part-of descending colon Longitudinal muscle layer of descending colon)) +Nos1 (projecting-to Anterior projecting) (implies Enteric motor neuron)
MUST be anterior projecting otherwise conflated with sdcol j.\nAdded inhibitory as functional circuit role, and removed anterior projection phenotype to be consistent with ApiNATOMY.\nAdd Molecular Phenotype for NOS-1 in order to be consistent with ApiNATOMY\nadd projection phenotype\nPhenotype question: Composer provides "anterior projecting" which I don't see in the ttl file, but i do see "inhibitory", "motor" and "enteric". What should be entered? \nComposer feature: needs to accept all phenotype selections, not just (only?) the first in list when ingesting from NeuronDM. Check with Dario \nPath is correct.
A enteric connection goes from descending colon (Myenteric nerve plexus of descending colon) to descending colon (Circular muscle layer of descending colon). This anterior projecting motor connection projects from the descending colon (Myenteric nerve plexus of descending colon). It is described in SAWG model of descending colon model.
(intersection-of-part-of descending colon Myenteric nerve plexus of descending colon) (with-axon-presynaptic-element-in (intersection-of-part-of descending colon Circular muscle layer of descending colon)) +Nos1 (projecting-to Anterior projecting) (implies Enteric motor neuron)
Added molecular phenotype for NOS-1 to be consistent with ApiNATOMY\n10/30/2025 [ST]: This ApiNATOMY population had an axon terminal colocated with the soma. Does this cause any problems?\nadd projection phenotype\nQuestion for Tom regarding "anterior projecting phenotype"; discussed with Bernard 8/28 and this is not a feature of ANS neurons? Not sure if this is a Composer issue or if it's in the ttl file.\nComposer Feature: system status changes should be hidden unless selected to be displayed. (alternatively or both -- shown as a separate tab?) It muddies the discussions between curators too much.\nQuestion: this population's phenotype in the ttl file lists : motor and enteric phenotypes, I don't see "anterior projecting phenotype" in the ttl file. Is this an error?
submucosal nerve plexus of descending colon to arteriole wall in submucous nerve plexus of descending colon
A enteric connection goes from descending colon (Submucosal nerve plexus of descending colon) to Arteriole in submucous nerve plexus of descending colon (wall of blood vessel). This motor connection projects from the descending colon (Submucosal nerve plexus of descending colon). It is described in SAWG model of descending colon model.
(intersection-of-part-of descending colon Submucosal nerve plexus of descending colon) (with-axon-presynaptic-element-in (intersection-of-part-of wall of blood vessel Arteriole in submucous nerve plexus of descending colon)) (implies Enteric motor neuron)
from descending colon (Submucosal nerve plexus of descending colon) to Arteriole in submucous nerve plexus of descending colon (wall of blood vessel)
Resolution: change from (blood) to (wall of arteriole).\nQuestion for Tom/Bernard: Can you review the modeling for the axon terminal with the blood vessel? It looks from the diagram that it should be "arteriole in submucous nerve plexus of descending colon (wall of arteriole)", not blood. I did not modify anything because this population was imported into Composer and NOT marked as invalid. All region(layer) pairs were properly imported from NeuronDM. I DID add enteric as a phenotype to match what was in the ttl file - this means that there are two phenotypes: an ANS phenotup, and a ciruit role phenotype. Composer only lists the first one, so, it might be a feature request to ensure that all phenotypes are listed in the Knowledge Statement for clarity. thoughts?
submucosal nerve plexus of descending colon to lamina propria mucosae of descending colon
A enteric connection goes from descending colon (Submucosal nerve plexus of descending colon) to descending colon (Lamina propria mucosae of descending colon). This connection projects from the descending colon (Submucosal nerve plexus of descending colon). It is described in SAWG model of descending colon model.
(intersection-of-part-of descending colon Submucosal nerve plexus of descending colon) (with-axon-presynaptic-element-in (intersection-of-part-of descending colon Lamina propria mucosae of descending colon)) neuron (implies Enteric)
from descending colon (Submucosal nerve plexus of descending colon) to descending colon (Lamina propria mucosae of descending colon)
myenteric nerve plexus of descending colon to inferior mesenteric ganglion via longitudinal muscle layer of descending colon via serosa of descending colon via lumbar colonic nerve
A connection goes from descending colon (Myenteric nerve plexus of descending colon) to inferior mesenteric ganglion via descending colon (Longitudinal muscle layer of descending colon) via descending colon (Serosa of descending colon) via lumbar colonic nerve. This intestino fugal projection phenotype connection projects from the descending colon (Myenteric nerve plexus of descending colon). It is described in SAWG model of descending colon model.
(intersection-of-part-of descending colon Myenteric nerve plexus of descending colon) (with-axons-in (intersection-of-part-of descending colon Longitudinal muscle layer of descending colon) (intersection-of-part-of descending colon Serosa of descending colon) lumbar colonic nerve) (with-axon-presynaptic-element-in inferior mesenteric ganglion) (projecting-onto ilxtr:neuron-type-sdcol-h) neuron (implies (projecting-to Intestino fugal projection))
from descending colon (Myenteric nerve plexus of descending colon) to inferior mesenteric ganglion via descending colon (Longitudinal muscle layer of descending colon) via descending colon (Serosa of descending colon) via lumbar colonic nerve
(intersection-of-part-of descending colon Myenteric nerve plexus of descending colon) (with-axons-in (intersection-of-part-of descending colon Longitudinal muscle layer of descending colon) (intersection-of-part-of descending colon Serosa of descending colon) lumbar colonic nerve) (with-axon-presynaptic-element-in inferior mesenteric ganglion) (projecting-onto ilxtr:neuron-type-sdcol-g) neuron (implies (projecting-to Intestino fugal projection))
Removed the "the" in the ApiNATOMY model name, so that SCKANNER is consistent for these populations.
T5-T8 spinal cord segment (neural tissue) to celiac ganglion-superior mesenteric ganglion complex via greater splanchnic nerve
A sympathetic pre-ganglionic connection goes from T5 segment of thoracic spinal cord (neural tissue) or T6 segment of thoracic spinal cord (neural tissue) or T7 segment of thoracic spinal cord (neural tissue) or T8 segment of thoracic spinal cord (neural tissue) to celiac ganglion- superior mesenteric ganglion complex via greater splanchnic nerve. This connection projects from the T8 segment of thoracic spinal cord (neural tissue), T5 segment of thoracic spinal cord (neural tissue), T6 segment of thoracic spinal cord (neural tissue) and T7 segment of thoracic spinal cord (neural tissue). It is described in SAWG model of the spleen model.
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed. 29 Aug 25: Added dendrites
(intersection-of-part-of neural tissue T5 segment of thoracic spinal cord) (intersection-of-part-of neural tissue T6 segment of thoracic spinal cord) (intersection-of-part-of neural tissue T7 segment of thoracic spinal cord) (intersection-of-part-of neural tissue T8 segment of thoracic spinal cord) (with-axon-in greater splanchnic nerve) (with-axon-presynaptic-element-in CSMG) (projecting-onto ilxtr:neuron-type-splen-5) neuron (implies Sympathetic Pre-Ganglionic)
from T5 segment of thoracic spinal cord (neural tissue) or T6 segment of thoracic spinal cord (neural tissue) or T7 segment of thoracic spinal cord (neural tissue) or T8 segment of thoracic spinal cord (neural tissue) to celiac ganglion- superior mesenteric ganglion complex via greater splanchnic nerve
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\n10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded dendrites to match on somas; per ApiNATOMY model\nadded zenodo ApiNAATOMY reference: https://doi.org/10.5281/zenodo.14042941 ; removed non-resolving ILX uri for the population.\n@tom - is this the correct Zenodo DOI to include for the ApINATOMY models? https://doi.org/10.5281/zenodo.14042929\nThis population has layer (neural tissue) which has been removed from other ApiNATOMY models. TBD if this should be updated for this model as well.\nI corrected the layer for all spinal cord populations originating from the spinal cord to "gray matter of spinal cord" as indicated by Bernard because it is more granular than "neural tissue".\nWe can discuss how the CSF was added as a layer in one of the origins. It was corrected to layer "neural tissue" as bolser lewis populations.\n@BERNARD & @Ilias, note the decision needed question below please. thanks!\nDECISION NEEDED: include (neural tissue) as a layer? also, find it weird / wrong? that in T5 (csf) is the region/layer pair. I wouldn't think the fiber goes through csf, am i wrong?
celiac ganglion-superior mesenteric ganglion complex to periarterial lymphatic sheath via splenic nerve via spleen (spleen capsule) via spleen (red pulp of spleen) via spleen (perimarginal cavernous sinus) via spleen (spleen marginal sinus) via spleen (marginal zone network) via spleen (white pulp of spleen)
A sympathetic post-ganglionic connection goes from celiac ganglion- superior mesenteric ganglion complex to periarterial lymphatic sheath via celiac ganglion- superior mesenteric ganglion complex via splenic nerve via spleen (spleen capsule) via spleen (red pulp of spleen) via spleen (Perimarginal cavernous sinus) via spleen (spleen marginal sinus) via spleen (Marginal zone network) via spleen (white pulp of spleen). This connection projects from the celiac ganglion- superior mesenteric ganglion complex. It is described in SAWG model of the spleen model.
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed. 29 Aug: added dendrite; updated reference
CSMG (with-axons-in (intersection-of-part-of red pulp of spleen spleen) (intersection-of-part-of spleen Marginal zone network) (intersection-of-part-of spleen Perimarginal cavernous sinus) (intersection-of-part-of spleen spleen capsule) (intersection-of-part-of spleen spleen marginal sinus) (intersection-of-part-of white pulp of spleen spleen) splenic nerve) (with-axon-presynaptic-element-in PALS) neuron (implies Sympathetic Post-Ganglionic)
from celiac ganglion- superior mesenteric ganglion complex to periarterial lymphatic sheath via celiac ganglion- superior mesenteric ganglion complex via splenic nerve via spleen (spleen capsule) via spleen (red pulp of spleen) via spleen (Perimarginal cavernous sinus) via spleen (spleen marginal sinus) via spleen (Marginal zone network) via spleen (white pulp of spleen)
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nAdded Gary Mawe's ORCiD to Expert Consultant.\nAdded dendrite to match ApiNATOMY ; removed github, added zenodo DOI for the APINATOMY model\nREVIEW NEEDED: the ApiNATOMY diagram doesn't have the inner anatomies of the spleen identified (as far as I can tell?) so I can't confirm the partial order for the spleen structures after the red pulp.\nDECISION: added afferent terminal in CG/SMG to be consistent with ApiNATOMY diagram (affirmed by Bernard 6/5/2024)
dorsal motor nucleus of vagus nerve to celiac ganglion-superior mesenteric ganglion complex via vagus nerve; dorsal motor nucleus of vagus nerve to juxta-intestinal mesenteric lymph node via medulla oblongata (neural tissue) via vagus nerve
A parasympathetic pre-ganglionic connection goes from dorsal motor nucleus of vagus nerve to celiac ganglion- superior mesenteric ganglion complex via medulla oblongata (neural tissue) via vagus nerve; from dorsal motor nucleus of vagus nerve to juxta-intestinal mesenteric lymph node via medulla oblongata (neural tissue) via vagus nerve via intestine (serosa of intestine). This connection projects from the dorsal motor nucleus of vagus nerve. It is described in SAWG model of the spleen model.
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed. 29 Aug 25: added dendrite, ApiNATOMY DOI, Gary Mawe as expert consultant
dorsal motor nucleus of vagus nerve (with-axons-in (intersection-of-part-of bulb) (intersection-of-part-of intestine serosa of intestine) 10n) (with-axon-presynaptic-element-in CSMG juxta-intestinal mesenteric lymph node) neuron (implies Parasympathetic Pre-Ganglionic)
from dorsal motor nucleus of vagus nerve to celiac ganglion- superior mesenteric ganglion complex via medulla oblongata (neural tissue) via vagus nerve from dorsal motor nucleus of vagus nerve to juxta-intestinal mesenteric lymph node via medulla oblongata (neural tissue) via vagus nerve via intestine (serosa of intestine)
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded dendrite; added zenodo link, added Gary Mawe as expert.\nDoes splen 2 synapse with splen 5?\nDECISION: added afferent terminal as drawn in ApiNATOMY diagram to DMV (affirmed by Bernard in lab meeting 6/6/2024)
anatomical wall of bowel serous membrane
anatomical wall of intestine serous membrane
intestine anatomical wall serous membrane
serous membrane of anatomical wall of bowel
serous membrane of anatomical wall of intestine
serous membrane of bowel anatomical wall
serous membrane of intestine anatomical wall
nucleus of solitary tract to dorsal motor nucleus of vagus nerve via medulla oblongata (neural tissue)
A connection goes from nucleus of solitary tract to dorsal motor nucleus of vagus nerve via nucleus of solitary tract via medulla oblongata (neural tissue). This spinal cord descending projection phenotype connection projects from the nucleus of solitary tract. It is described in SAWG model of the spleen model.
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed. 29 Aug 25: added dendrite; added ApiNATOMY DOI, added Gary Mawe as expert
nucleus of solitary tract (with-axon-in (intersection-of-part-of bulb)) (with-axon-presynaptic-element-in dorsal motor nucleus of vagus nerve) (projecting-onto ilxtr:neuron-type-splen-2) neuron (implies (projecting-to Spinal cord descending projection))
from nucleus of solitary tract to dorsal motor nucleus of vagus nerve via nucleus of solitary tract via medulla oblongata (neural tissue)
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded dendrites, added zenodo reference, added Gary Mawe as expert.\nBUG resolved.\nBUG: cannot add Projection phenotype for Spinal Cord Descending Projection Phenotype in composer; AND Composer currently requires that a (ANS) phenotype be set for all populations. Once these are fixed, need to update this population. \nDECISION: added afferent terminal in NTS to match the ApiNATOMY diagram (affirmed by Bernard in lab meeting 6/5/2024) \nNEEDS REVIEW: should forward connection exist? this looks legit according to drawing, but not positive.
inferior vagus X ganglion with axon sensory terminal in multicellular organism via vagus nerve with axon terminal in nucleus of solitary tract via vagus nerve
A connection goes from inferior vagus X ganglion to multicellular organism via vagus nerve; from inferior vagus X ganglion to nucleus of solitary tract via vagus nerve via medulla oblongata (neural tissue). This sensory connection projects from the inferior vagus X ganglion. It is described in SAWG model of the spleen model.
29 Aug: changed axon to axon to PNS for vagus nerve; added zenodo provenance.
inferior vagus X ganglion (with-axon-in (intersection-of-part-of bulb)) (with-axon-presynaptic-element-in nucleus of solitary tract) (projecting-onto ilxtr:neuron-type-splen-3) (implies sensory neuron)
from inferior vagus X ganglion to multicellular organism via vagus nerve from inferior vagus X ganglion to nucleus of solitary tract via vagus nerve via medulla oblongata (neural tissue)
10/30/2025 [ST]: This ApiNATOMY population did not have a dendrite colocated with the soma, creating a loop. The population was not modified.\n10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nlast status is incorrect. axon to vagus nerve to AXON to PNS\nupdated axon to vagus nerve to be AXON\nModified A2BvC from unknown location to multicellular organism as it is the original choice in the spleen model so I believe this is a better choice.\nmodified the A2BvC to say unknown location instead of multicellular organism to make this more understandable.\nneed citations to include here.\nThe multicellular organism is super confusing....... we should come up with a better option for "who knows where this goes?"\nDendrite was confirmed by Bernard to be correct.\nNOTE: we now have additional vagus terms (courtesy of REVA termsets) that could be utilized for more refined routing in he future, if we desire (e.g., cranial nerve rootlets, and trunk of vagus) also BUG resolved, so tag removed.\nREVIEW: does this population have a forward connection with splen 3?\nNOTE: where this population is distally projecting is not known - therefore it is mapped as projecting to "multicellular organism" to indicate that the neuron population didn't leave the body of the organism.\nBUG: Composer requires a (ANS) phenotype to be set for all populations. Once that is corrected, this population needs to be updated.
A not specified connection goes from parabrachial nucleus to insula via parabrachial nucleus. This connection projects from the parabrachial nucleus. It is described in stomach circuitry model model.
parabrachial nucleus (with-axon-presynaptic-element-in iNS) (projecting-onto ilxtr:neuron-type-sstom-2 ilxtr:neuron-type-sstom-3) neuron
from parabrachial nucleus to insula via parabrachial nucleus
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadd forward connection\nAdded dendrite\nremoved non-resolving ILX id from provenance, updated spelling of apinatomy model for consistency\nPer Bernard this should be classified as a Brain ascending projection neuron\nFOR REVIEW: removed the forward connection to population #2 since that didn't look direct (per Bernard's assertion for the drawing); added afferent terminal in PBN; no need to include dendrite, since the dendrite doesn't leave the region.\nThis neuron population actually does not have a phenotype specified that I can see here: https://github.com/SciCrunch/NIF-Ontology/blob/dev/ttl/generated/neurons/apinat-pops-more.ttl
A not specified connection goes from insula to parabrachial nucleus via insula. This connection projects from the insula. It is described in stomach circuitry model model.
iNS (with-axon-presynaptic-element-in parabrachial nucleus) (projecting-onto ilxtr:neuron-type-sstom-1) neuron
from insula to parabrachial nucleus via insula
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadd forward connection\nadded dendrite\nremoved non-resolving ILX id, updated apinatomy model for consistency\nFor REVIEW: removed forward connection to population #1 based on drawing; added afferent terminal in insula to indicate that the dendrite doesn't leave the region. There is no phenotype listed for this population in the ttl file.
A not specified connection goes from insula to nucleus of solitary tract via insula. This connection projects from the insula. It is described in stomach circuitry model model.
iNS (with-axon-presynaptic-element-in nucleus of solitary tract) (projecting-onto ilxtr:neuron-type-sstom-4 ilxtr:neuron-type-sstom-6) neuron
from insula to nucleus of solitary tract via insula
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nAlso, note that it's really hard to determine WHICH population is the correct one to choose when you're adding a forward connection because it uses the rdfs:label. Perhaps population set and ID would be better.\nComposer Bug: because this has a co-located dendrite, we need to revisit how the diagram is created. Also, since this population doesn't have a named via from the soma location to the terminal location, it incorrectly says the via to the DMV is a dendrite. Dendrites shouldn't be a connective via at all.\nUpdated to add the missing forward connection to sstom-6 (https://composer.scicrunch.io/statement/65) as identified by Tom. Confirmed that this is depicted in the ApiNATOMY model (https://raw.githubusercontent.com/open-physiology/apinatomy-models/refs/heads/master/models/sawg-stomach/docs/sawg-stomach.svg)\nFIXME pretty sure this is missing a forward connection to sstom-6 in simple given that sstom-5 -> 4 and 6 ... pretty sure it is a simple oversight\nadded dendrite\nremoved non-resolving ILX id from provenance; updated apinatomy model name to be consistent.\nFOR REVIEW: removed forward connection to Population #4; set afferent termninal as present in Insula (to indicate that the dendrite does not leave the region); and there is no phenotype specified for this population in the ttl file.
nucleus of solitary tract to parabrachial nucleus
A not specified connection goes from nucleus of solitary tract to parabrachial nucleus via nucleus of solitary tract. This connection projects from the nucleus of solitary tract. It is described in stomach circuitry model model.
nucleus of solitary tract (with-axon-presynaptic-element-in parabrachial nucleus) (projecting-onto ilxtr:neuron-type-sstom-1) neuron
from nucleus of solitary tract to parabrachial nucleus via nucleus of solitary tract
this population looks like the statement preview is not being updated. need to confirm later...\n10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadd missing forward connection\nMissing phenotype\nupdated spelling of apinatomy model\nFor REVIEW: added afferent terminal within NTS to indicate that the dendrite does not leave the region; there is no phenotype specified in the ttl file.
nucleus of solitary tract to dorsal motor nucleus of vagus nerve
A not specified connection goes from nucleus of solitary tract to dorsal motor nucleus of vagus nerve via nucleus of solitary tract. This connection projects from the nucleus of solitary tract. It is described in stomach circuitry model model.
nucleus of solitary tract (with-axon-presynaptic-element-in dorsal motor nucleus of vagus nerve) (projecting-onto ilxtr:neuron-type-sstom-10 ilxtr:neuron-type-sstom-7 ilxtr:neuron-type-sstom-8 ilxtr:neuron-type-sstom-9) neuron
from nucleus of solitary tract to dorsal motor nucleus of vagus nerve via nucleus of solitary tract
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nupdated spelling of apinatomy model\nFOR REVIEW: removed all forward connections based on drawing from Bernard; added afferent terminal in NTS to indicate that the dendrite does not leave the region; there is no phenotype specified in the ttl file
nodose ganglion with axon sensory terminal in smooth muscle longitudinal layer of distal stomach or myenteric nerve plexus of distal stomach or smooth muscle circular layer or mucosa of distal stomach via vagus nerve; with axon sensory terminal in smooth muscle longitudinal layer of proximal stomach or myenteric nerve plexus of proximal stomach or smooth muscle circular layer of proximal stomach or mucosa of proximal stomach via vagus nerve; with axon sensory terminal in smooth muscle longitudinal layer of lower esophagus or myenteric nerve plexus of lower esophagus or smooth muscle circular layer of lower esophagus or mucosa of lower esophagus via vagus nerve with axon terminal in nucelus of solitary tract
A connection goes from inferior vagus X ganglion to proximal stomach (stomach smooth muscle circular layer) via vagus nerve via proximal stomach (serosa of stomach) via proximal stomach (stomach smooth muscle outer longitudinal layer) via proximal stomach (myenteric nerve plexus of stomach) via proximal stomach (stomach smooth muscle circular layer); from inferior vagus X ganglion to esophagus (myenteric nerve plexus of lower esophagus) or lower esophagus (myenteric nerve plexus of lower esophagus) via vagus nerve via lower esophagus via lower esophagus (serosa of esophagus) via lower esophagus (esophagus smooth muscle longitudinal layer); from inferior vagus X ganglion to proximal stomach (myenteric nerve plexus of stomach) via vagus nerve via proximal stomach (serosa of stomach) via proximal stomach (stomach smooth muscle outer longitudinal layer) via proximal stomach (myenteric nerve plexus of stomach); from inferior vagus X ganglion to nucleus of solitary tract; from inferior vagus X ganglion to proximal stomach (mucosa of stomach) via vagus nerve via proximal stomach (serosa of stomach) via proximal stomach (stomach smooth muscle outer longitudinal layer) via proximal stomach (myenteric nerve plexus of stomach) via proximal stomach (stomach smooth muscle circular layer) via proximal stomach (stomach smooth muscle inner oblique layer) via proximal stomach (submucosa of stomach) via proximal stomach (muscularis mucosae of stomach); from inferior vagus X ganglion to distal stomach (stomach smooth muscle circular layer) via vagus nerve via distal stomach (serosa of stomach) via distal stomach (stomach smooth muscle outer longitudinal layer) via distal stomach (myenteric nerve plexus of stomach) via distal stomach (stomach smooth muscle circular layer); from inferior vagus X ganglion to proximal stomach (stomach smooth muscle outer longitudinal layer) via vagus nerve via proximal stomach (serosa of stomach) via proximal stomach (stomach smooth muscle outer longitudinal layer); from inferior vagus X ganglion to distal stomach (myenteric nerve plexus of stomach) via vagus nerve via distal stomach (serosa of stomach) via distal stomach (stomach smooth muscle outer longitudinal layer) via distal stomach (myenteric nerve plexus of stomach); from inferior vagus X ganglion to distal stomach (stomach smooth muscle outer longitudinal layer) via vagus nerve via distal stomach (serosa of stomach) via distal stomach (stomach smooth muscle outer longitudinal layer); from inferior vagus X ganglion to distal stomach (mucosa of stomach) via vagus nerve via distal stomach (serosa of stomach) via distal stomach (stomach smooth muscle outer longitudinal layer) via distal stomach (myenteric nerve plexus of stomach) via distal stomach (stomach smooth muscle circular layer) via distal stomach (stomach smooth muscle inner oblique layer) via distal stomach (submucosa of stomach) via distal stomach (muscularis mucosae of stomach). This sensory connection projects from the inferior vagus X ganglion. It is described in stomach circuitry model model.
inferior vagus X ganglion (with-axon-presynaptic-element-in nucleus of solitary tract) (projecting-onto ilxtr:neuron-type-sstom-4 ilxtr:neuron-type-sstom-6) (implies sensory neuron)
from inferior vagus X ganglion to proximal stomach (stomach smooth muscle circular layer) via vagus nerve via proximal stomach (serosa of stomach) via proximal stomach (stomach smooth muscle outer longitudinal layer) via proximal stomach (myenteric nerve plexus of stomach) via proximal stomach (stomach smooth muscle circular layer) from inferior vagus X ganglion to esophagus (myenteric nerve plexus of lower esophagus) or lower esophagus (myenteric nerve plexus of lower esophagus) via vagus nerve via lower esophagus via lower esophagus (serosa of esophagus) via lower esophagus (esophagus smooth muscle longitudinal layer) from inferior vagus X ganglion to proximal stomach (myenteric nerve plexus of stomach) via vagus nerve via proximal stomach (serosa of stomach) via proximal stomach (stomach smooth muscle outer longitudinal layer) via proximal stomach (myenteric nerve plexus of stomach) from inferior vagus X ganglion to nucleus of solitary tract from inferior vagus X ganglion to proximal stomach (mucosa of stomach) via vagus nerve via proximal stomach (serosa of stomach) via proximal stomach (stomach smooth muscle outer longitudinal layer) via proximal stomach (myenteric nerve plexus of stomach) via proximal stomach (stomach smooth muscle circular layer) via proximal stomach (stomach smooth muscle inner oblique layer) via proximal stomach (submucosa of stomach) via proximal stomach (muscularis mucosae of stomach) from inferior vagus X ganglion to distal stomach (stomach smooth muscle circular layer) via vagus nerve via distal stomach (serosa of stomach) via distal stomach (stomach smooth muscle outer longitudinal layer) via distal stomach (myenteric nerve plexus of stomach) via distal stomach (stomach smooth muscle circular layer) from inferior vagus X ganglion to proximal stomach (stomach smooth muscle outer longitudinal layer) via vagus nerve via proximal stomach (serosa of stomach) via proximal stomach (stomach smooth muscle outer longitudinal layer) from inferior vagus X ganglion to distal stomach (myenteric nerve plexus of stomach) via vagus nerve via distal stomach (serosa of stomach) via distal stomach (stomach smooth muscle outer longitudinal layer) via distal stomach (myenteric nerve plexus of stomach) from inferior vagus X ganglion to distal stomach (stomach smooth muscle outer longitudinal layer) via vagus nerve via distal stomach (serosa of stomach) via distal stomach (stomach smooth muscle outer longitudinal layer) from inferior vagus X ganglion to distal stomach (mucosa of stomach) via vagus nerve via distal stomach (serosa of stomach) via distal stomach (stomach smooth muscle outer longitudinal layer) via distal stomach (myenteric nerve plexus of stomach) via distal stomach (stomach smooth muscle circular layer) via distal stomach (stomach smooth muscle inner oblique layer) via distal stomach (submucosa of stomach) via distal stomach (muscularis mucosae of stomach)
this population has a colocated axon.\n10/30/2025: this ApiNATOMY population actually didn't have a dendrite colocated.\n10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nFurther, confirmed the formatting for provenance\nReviewed this population using Fahim's new app: https://sckan-partial-order.netlify.app/ and confirmed that this population in composer matches ApiNATOMY with the addition of utilizing Axon to PNS axiom for all location phenotypes in the stomach where there is a traversal.\nremoved non-resolving ILX id; updated apinatomy model for consistency\nFOR REVIEW: Bernard/Tom: Should we create region: layer pairs for longitudinal muscle in distal stomach; etc?\nThis population needs it's forward connection removed.
anatomical wall of stomach serous membrane
anatomical wall of ventriculus serous membrane
serosa of anatomical wall of ventriculus
serous membrane of anatomical wall of stomach
serous membrane of anatomical wall of ventriculus
serous membrane of stomach anatomical wall
serous membrane of ventriculus anatomical wall
ventriculus anatomical wall serous membrane
lamina muscularis mucosae (tunica mucosa)(gaster)
stomach smooth muscle inner oblique layer
oblique fiber layer of gastric muscularis
esophagus smooth muscle longitudinal layer
outer longitudinal muscle layer of esophagus
dorsal motor nucleus of vagus nerve to myenteric nerve plexus of distal stomach via vagus nerve via distal stomach (serosa of stomach) via distal stomach (stomach smooth muscle outer longitudinal layer)
A parasympathetic pre-ganglionic connection goes from dorsal motor nucleus of vagus nerve to distal stomach (myenteric nerve plexus of stomach) via vagus nerve via distal stomach (serosa of stomach) via distal stomach (stomach smooth muscle outer longitudinal layer). This connection projects from the dorsal motor nucleus of vagus nerve. It is described in stomach circuitry model model.
dorsal motor nucleus of vagus nerve (with-axons-in (intersection-of-part-of serosa of stomach distal stomach) (intersection-of-part-of stomach smooth muscle outer longitudinal layer distal stomach) 10n) (with-axon-presynaptic-element-in (intersection-of-part-of distal stomach myenteric nerve plexus of stomach)) (projecting-onto ilxtr:neuron-type-sstom-11) neuron (implies Parasympathetic Pre-Ganglionic)
from dorsal motor nucleus of vagus nerve to distal stomach (myenteric nerve plexus of stomach) via vagus nerve via distal stomach (serosa of stomach) via distal stomach (stomach smooth muscle outer longitudinal layer)
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded dendrite\nremoved non-resolving provenance ILX; and updated apinatomy model\nTriangle problem solved\nThe triangle created is because origin and destination are not distinguished and since DVMN is linked to the vagus nerve both origin and destination will be linked too.
dorsal motor nucleus of vagus nerve to distal stomach (myenteric nerve plexus of stomach) via vagus nerve via distal stomach (serosa of stomach) via distal stomach (stomach smooth muscle outer longitudinal layer)
A parasympathetic pre-ganglionic connection goes from dorsal motor nucleus of vagus nerve to distal stomach (myenteric nerve plexus of stomach) via dorsal motor nucleus of vagus nerve via vagus nerve via distal stomach (serosa of stomach) via distal stomach (stomach smooth muscle outer longitudinal layer). This connection projects from the dorsal motor nucleus of vagus nerve. It is described in stomach circuitry model model.
dorsal motor nucleus of vagus nerve (with-axons-in (intersection-of-part-of serosa of stomach distal stomach) (intersection-of-part-of stomach smooth muscle outer longitudinal layer distal stomach) 10n) (with-axon-presynaptic-element-in (intersection-of-part-of distal stomach myenteric nerve plexus of stomach)) (projecting-onto ilxtr:neuron-type-sstom-12) neuron (implies Parasympathetic Pre-Ganglionic)
from dorsal motor nucleus of vagus nerve to distal stomach (myenteric nerve plexus of stomach) via dorsal motor nucleus of vagus nerve via vagus nerve via distal stomach (serosa of stomach) via distal stomach (stomach smooth muscle outer longitudinal layer)
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nhas Dendrite co-located with Soma. need to revisit how to model this in NPO, and how Composer renders dendrites (shouldn't connect to axon vias or any destination\nremoved non-resolving ILX id from provenance, updated apinatomy model
dorsal motor nucleus of vagus nerve to proximal stomach (myenteric nerve plexus of stomach) via vagus nerve via proximal stomach (serosa of stomach) via proximal stomach (stomach smooth muscle outer longitudinal layer)
A parasympathetic pre-ganglionic connection goes from dorsal motor nucleus of vagus nerve to proximal stomach (myenteric nerve plexus of stomach) via vagus nerve via proximal stomach (serosa of stomach) via proximal stomach (stomach smooth muscle outer longitudinal layer). This connection projects from the dorsal motor nucleus of vagus nerve. It is described in stomach circuitry model model.
dorsal motor nucleus of vagus nerve (with-axons-in (intersection-of-part-of serosa of stomach proximal stomach) (intersection-of-part-of stomach smooth muscle outer longitudinal layer proximal stomach) 10n) (with-axon-presynaptic-element-in (intersection-of-part-of myenteric nerve plexus of stomach proximal stomach)) (projecting-onto ilxtr:neuron-type-sstom-13) neuron (implies Parasympathetic Pre-Ganglionic)
from dorsal motor nucleus of vagus nerve to proximal stomach (myenteric nerve plexus of stomach) via vagus nerve via proximal stomach (serosa of stomach) via proximal stomach (stomach smooth muscle outer longitudinal layer)
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nadded dendrites\nadded apinatomy model name
SSTOM 10 is a replica of 8; they are equivalent but are modeled differently in ApiNATOMY
dorsal motor nucleus of vagus nerve (with-axons-in (intersection-of-part-of serosa of stomach proximal stomach) (intersection-of-part-of stomach smooth muscle outer longitudinal layer proximal stomach) 10n) (with-axon-presynaptic-element-in (intersection-of-part-of myenteric nerve plexus of stomach proximal stomach)) (projecting-onto ilxtr:neuron-type-sstom-14) neuron (implies Parasympathetic Pre-Ganglionic)
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nsadded dendrite\nadded apinatomy model name
distal stomach (myenteric nerve plexus of stomach) to distal stomach (stomach smooth muscle outer longitudinal layer); distal stomach (myenteric nerve plexus of stomach) to distal stomach (mucosa of stomach) via distal stomach (stomach smooth muscle circular layer) via distal stomach (stomach smooth muscle inner oblique layer) via distal stomach (submucosa of stomach) via distal stomach (muscularis mucosae of stomach)
A enteric connection goes from distal stomach (myenteric nerve plexus of stomach) to distal stomach (stomach smooth muscle circular layer) via distal stomach (myenteric nerve plexus of stomach) via distal stomach (stomach smooth muscle circular layer); from distal stomach (myenteric nerve plexus of stomach) to distal stomach (mucosa of stomach) or distal stomach (stomach smooth muscle outer longitudinal layer) via distal stomach (myenteric nerve plexus of stomach) via distal stomach (stomach smooth muscle circular layer) via distal stomach (stomach smooth muscle inner oblique layer) via distal stomach (submucosa of stomach) via distal stomach (muscularis mucosae of stomach). This connection projects from the distal stomach (myenteric nerve plexus of stomach). It is described in stomach circuitry model model.
The destinations to both the distal stomach smooth muscle outer longitudinal layer and the distal stomach smooth muscle circular layer include the PDGFR-alpha receptor that is not demonstrated in the modelling of this population. This population includes non-neuronal cell types (Parietal cell, enteroendocrine cell, ) as targets in the ApiNATOMY model. IN KM Lab meeting 10/23/25, we decide to revisit this scenario to determine if this should be modeled as a forward connection, or a specialized type of forward connection (e.g., synpasesWith) or similar. Otherwise, I updated the modeling in this population matches anatomies and layers as depicted in the model [https://raw.githubusercontent.com/open-physiology/apinatomy-models/refs/heads/master/models/sawg-stomach/docs/sawg-stomach.svg]. Also note that this neuron population is identified as inhibitory. 10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.
(intersection-of-part-of distal stomach myenteric nerve plexus of stomach) (with-axons-in (intersection-of-part-of muscularis mucosae of stomach distal stomach) (intersection-of-part-of stomach smooth muscle inner oblique layer distal stomach) (intersection-of-part-of submucosa of stomach distal stomach)) (with-axon-presynaptic-element-in (intersection-of-part-of mucosa of stomach distal stomach) (intersection-of-part-of stomach smooth muscle circular layer distal stomach) (intersection-of-part-of stomach smooth muscle outer longitudinal layer distal stomach)) neuron (implies Enteric)
from distal stomach (myenteric nerve plexus of stomach) to distal stomach (stomach smooth muscle circular layer) via distal stomach (myenteric nerve plexus of stomach) via distal stomach (stomach smooth muscle circular layer) from distal stomach (myenteric nerve plexus of stomach) to distal stomach (mucosa of stomach) or distal stomach (stomach smooth muscle outer longitudinal layer) via distal stomach (myenteric nerve plexus of stomach) via distal stomach (stomach smooth muscle circular layer) via distal stomach (stomach smooth muscle inner oblique layer) via distal stomach (submucosa of stomach) via distal stomach (muscularis mucosae of stomach)
Enteric is anatomical system phenotype and is orthogonal to excitatory/inhibitory already.\nRemoved enteric since we can't integrate into sckan with this. however, we need to revisit this, since it should be possible to be enteric _and_ inhibitory or excitatory\nAdded inhibitory as functional circuit role.\nThis population has a colocated axon. need to address later.\n10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed.\nFrom Fahim: partial order does not impact the reasoner. the reasoner only cares about the axioms and 2 axioms for the same anotomical location should be fine. We already have those cases for intrinsic populations (aacar 10a, 10v, 2i, 2m) where same anatomical region is assigned for mutiple axioms e.g., soma=axon=axon terminal. But it would be useful to have a list of such cases that are not intrinsic populations as they might not generate the diagrams properly. Noted as ComposerBug tag.\nThe modeling is updated to include circular muscle both as a via (axon) to other layers and destination (axon terminal).\nThis cell population is inihibitory, and the predicate is not accessible in the frontend right now in composer, so that cannot be added at the moment.\nLike sstom-12 [https://composer.scicrunch.io/statement/123] this population needs to be updated to include it's inhibitory phenotype, and update it's path to match the ApiNATOMY diagram. It includes non-neuronal cells as destinations, but these are not modeled currently. See Curation Note.\nfix missing dendrite\nadded apinatomy model name
distal stomach (myenteric nerve plexus of stomach) to distal stomach (stomach smooth muscle outer longutudinal layer); distal stomach (myenteric nerve plexus of stomach) to distal stomach (mucosa of stomach) via distal stomach (stomach smooth muscle circular layer) via distal stomach (stomach smooth muscle inner oblique layer) via distal stomach (submucosa of stomach) via distal stomach (muscularis mucosae of stomach)
10/30/2025 [ST]: This ApiNATOMY population had a dendrite colocated with the soma, creating a loop. This has been removed. 10/23/2025 [ST]: This population includes non-neuronal cell types (Parietal cell, enteroendocrine cell, chief cell) as targets in the ApiNATOMY model. IN KM Lab meeting 10/23/25, we decided to revisit this scenario to determine if this should be modeled as a forward connection, or a specialized type of forward connection (e.g., synpasesWith) or similar. Otherwise, I updated the modeling in this population matches anatomies and layers as depicted in the model [https://raw.githubusercontent.com/open-physiology/apinatomy-models/refs/heads/master/models/sawg-stomach/docs/sawg-stomach.svg]. Also note that this neuron population is identified as excitatory.
Enteric is anatomical system phenotype and is orthogonal to excitatory/inhibitory already.\nRemoved enteric since we can't integrate into sckan with this. however, we need to revisit this, since it should be possible to be enteric _and_ inhibitory or excitatory\nAdded excitatory as a functional circuit role\nThis population has a colocated axon\nRemoving dendrite that is colocated with the soma. Axon & Axon terminal colocated was discussed in KM Meeting 10/30/2025, explicit decision pending.\nThis population uses multiple axioms for the same anatomical region. Revisit when we address this issue.\nThis is an excitatory cell population, but that is not reflected in composer (hidden predicate?) need to revisit when Composer development can resume.\nI updated the population path to reflect the ApINATOMY diagram. I recall Tom saying that he didn't like it when you needed to have 2 axioms for the same anatomical location (hasAxonLocatedIn & hasAxonTerminalLocatedIn), since the latter means that you have the former, but in order for the partial order to be correct in Composer, we need to list the region both as a via and a destination. \nAlso, this population has a dendrite explicitly added in the same region as the soma - which makes the population diagram look funny (but is otherwise ok). \nFinally, this population also identified non-neuronal cells as targets of the neuronal population; these are not currently modeled. See Curator notes.\nfix missing dendrite\nThis population uses cells not just location phenotypes.\nadded apinatomy model name\nadded cell destinations in the label but not in the modelling
Petilla initial classical spiking phenotype
Petilla initial delayed spiking phenotype
Petilla sustained accommodating phenotype
how do we deal with the fact that there are other accommodating phenotypes‚ multiple parent is annoying
Petilla sustained non accommodating phenotype
hasProjectionPhenotype (some (class brainRegion (not (brainRegion containing this neruon))))
model this as NegPhenotype(ilxtr:LocalAxon) except that this entails boutons/terminals
to get Untufted use the negative phenotype of this and add a naming rule
Expressed in restricted populations within the hypothalamus (ventromedial hypothalamus), and in cortical layer 4.
Expressed in cholinergic neurons - restricted populations within the medulla, pons, thalamus, and midbrain; and in scattered cells within the striatum, basal forebrain, and a very sparse population of cells in the cortex.
tdTomato fluorescent protein is expressed in cytoplasm
CreDependentProteinFluorescingInSpectrumRed (indicator)
Expressed in restricted and/or sparse populations within the cerebellum, medulla, pons, midbrain, cortex, hippocampus, thalamus, and striatum.
Reporter expression in sparse and/or restricted regions of cortex (layer 4), thalamus, midbrain, medulla, pons, and cerebellum.
Enriched in cortical layer 4 and in restricted populations within cortex, thalamus, and in cerebellum.
Specific to GABAergic neurons. Enriched in the striatum, piriform cortex, and within restricted populations in the thalamus, hypothalamus, cerebellum, olfactory areas, and GABAergic interneurons of the cortex.
Strong scattered expression throughout the brain. Enriched expression in superficial cortical layers and restricted populations in hindbrain and midbrain.
synonym "vasoactive intestinal polypeptide"
Strong scattered expression throughout the brain. Localized areas of enrichment include restricted populations in thalamus, amygdala, midbrain, hindbrain, cortical subplate, and Purkinje cell layer.
Expressed in the molecular and granular layer in the cerebellum. Strong expression in the amygdala and olfactory bulb, particularly the accessory olfactory bulb, granular layer. Expressed in scattered cell populations in other brain regions.
Strong scattered cells in restricted populations throughout the brain including striatum, cortical subplate (amygdala), hippocampus, and hypothalamus. Expressed in choroid plexus.
Scattered expression throughout the cortex. Enriched in restricted populations in the cerebellum, medulla, pons, pallidum, and thalamus.
Dre expression is scattered throughout many regions of the brain including cortex, hippocampal formation, pons, and medulla; and in restricted populations within the pallidum, thalamus, midbrain, and cerebellum.
The expression of tdTomato fluorescent protein is dependent on both Cre and Flp recombinase activity.
CreFlpDependentProteinFluorescingInSpectrumRed (indicator)
The expression of tdTomato fluorescent protein is dependent on both Cre and Dre recombinase activity.
Strong expression in the zonal layer of the superior colliculus and subregions of thalamus. Dense, patchy expression in layer 4 and sparse expression in layer 5 and 6 in cortex. Also expressed in trigeminal nucleus and small patches of cells in cerebellum.
Reporter expression is enriched in layers 2 and 6 of cortex and in restricted populations within olfactory areas, hippocampal formation, striatum, pallidum, and hypothalamus.
Cre expression is selective for layer 6b of cortex and in restricted populations within cortical subplate.
Cre expression is restricted to layer 1 of cortex and in restricted populations within olfactory areas, hippocampal formation, striatum, and midbrain.
Scattered expression in cortical areas. Enrichment in populations of the amygdala, midbrain, and pons.
Widespread expression throughout most of the brain, except very sparse expression in the striatum and restricted populations within cerebellum, medulla, and pons.
Widespread, scattered expression throughout the brain. Expressed in restricted populations within thalamus, hypothalamus, midbrain, pons, and medulla.
Scattered expression in cortical layer 6. Restricted expression in the hypothalamus and amygdala.
Cre expression is enriched in restricted populations within hippocampal formation, cortical subplate, striatum, thalamus, hypothalamus, and medulla. Sparse, scattered expression in cortex.
In subcortical areas, this Cre line has expression in arcuate hypothalamic nucleus, dorsal lateral geniculate nucleus, ventral nucleus of the thalamus, bed nuclei of the stria terminalis, and scattered expression in superior colliculus. In the cortex, there is scattered expression in neurons and non-neuronal cells.
intermediolateral cell column of T10-L1 to aorticorenal ganglion via lesser splanchnic nerve
In human, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of eleventh thoracic segment or Intermediolateral nucleus of first lumbar segment or Intermediolateral nucleus of tenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to aorticorenal ganglion via lesser splanchnic nerve. This connection projects from the Intermediolateral nucleus of eleventh thoracic segment, Intermediolateral nucleus of first lumbar segment, Intermediolateral nucleus of tenth thoracic segment and Intermediolateral nucleus of twelfth thoracic segment.
Intermediolateral nucleus of eleventh thoracic segment Intermediolateral nucleus of first lumbar segment Intermediolateral nucleus of tenth thoracic segment Intermediolateral nucleus of twelfth thoracic segment (with-axon-in lesser splanchnic nerve) (with-axon-presynaptic-element-in aorticorenal ganglion) (projecting-onto neuron type kidney 132) neuron (implies Homo sapiens Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of eleventh thoracic segment or Intermediolateral nucleus of first lumbar segment or Intermediolateral nucleus of tenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to aorticorenal ganglion via lesser splanchnic nerve
aorticorenal ganglion to tunica adventitia of the renal artery OR afferent/efferent arterioles OR the juxtaglomerular apparatus OR renal tubules OR upper ureter via renal nerve plexus
In human, the sympathetic post-ganglionic connection goes from aorticorenal ganglion to juxtaglomerular apparatus or renal afferent arteriole or renal efferent arteriole or renal tubule or tunica adventitia of the renal artery or upper ureter via renal nerve plexus. This connection projects from the aorticorenal ganglion.
aorticorenal ganglion (with-axon-in renal nerve plexus) (with-axon-presynaptic-element-in juxtaglomerular apparatus renal afferent arteriole renal efferent arteriole renal tubule tunica adventitia of the renal artery upper ureter) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from aorticorenal ganglion to juxtaglomerular apparatus or renal afferent arteriole or renal efferent arteriole or renal tubule or tunica adventitia of the renal artery or upper ureter via renal nerve plexus
arteriola glomerularis efferens capsulae renalis
intermediolateral cell column of T10-L1 to renal ganglion via least splanchnic nerve
In human, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of eleventh thoracic segment or Intermediolateral nucleus of first lumbar segment or Intermediolateral nucleus of tenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to renal nerve plexus ganglion via least splanchnic nerve. This connection projects from the Intermediolateral nucleus of eleventh thoracic segment, Intermediolateral nucleus of first lumbar segment, Intermediolateral nucleus of tenth thoracic segment and Intermediolateral nucleus of twelfth thoracic segment.
Intermediolateral nucleus of eleventh thoracic segment Intermediolateral nucleus of first lumbar segment Intermediolateral nucleus of tenth thoracic segment Intermediolateral nucleus of twelfth thoracic segment (with-axon-in least splanchnic nerve) (with-axon-presynaptic-element-in renal nerve plexus ganglion) (projecting-onto neuron type kidney 134) neuron (implies Homo sapiens Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of eleventh thoracic segment or Intermediolateral nucleus of first lumbar segment or Intermediolateral nucleus of tenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to renal nerve plexus ganglion via least splanchnic nerve
renal ganglion to tunica adventitia of the renal artery OR afferent/efferent arterioles OR the juxtaglomerular apparatus OR renal tubules OR upper ureter via renal plexus
In human, the sympathetic post-ganglionic connection goes from renal nerve plexus ganglion to juxtaglomerular apparatus or renal afferent arteriole or renal efferent arteriole or renal tubule or tunica adventitia of the renal artery or upper ureter via renal nerve plexus. This connection projects from the renal nerve plexus ganglion.
renal nerve plexus ganglion (with-axon-in renal nerve plexus) (with-axon-presynaptic-element-in juxtaglomerular apparatus renal afferent arteriole renal efferent arteriole renal tubule tunica adventitia of the renal artery upper ureter) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from renal nerve plexus ganglion to juxtaglomerular apparatus or renal afferent arteriole or renal efferent arteriole or renal tubule or tunica adventitia of the renal artery or upper ureter via renal nerve plexus
dorsal motor nucleus of vagus nerve to intramural ganglia of the kidney via vagus nerve via esophageal vagus trunk via vagal trunks via aortic plexus via renal plexus
Evidence gap: The knowledge expert noted that additional experimental evidence is needed.
In human, the parasympathetic pre-ganglionic connection goes from dorsal motor nucleus of vagus nerve to intramural ganglion of the kidney via vagus nerve via esophageal vagus trunk via vagus X nerve trunk via aortic plexus via renal nerve plexus. This connection projects from the dorsal motor nucleus of vagus nerve.
dorsal motor nucleus of vagus nerve (with-axons-in 10n aortic plexus esophageal vagus trunk renal nerve plexus vagus X nerve trunk) (with-axon-presynaptic-element-in intramural ganglion of the kidney) (projecting-onto neuron type kidney 136) neuron (implies Homo sapiens Parasympathetic Pre-Ganglionic)
from dorsal motor nucleus of vagus nerve to intramural ganglion of the kidney via vagus nerve via esophageal vagus trunk via vagus X nerve trunk via aortic plexus via renal nerve plexus
intramural ganglia of the kidney to renal artery OR kidney OR upper ureter via postganglionic fiber
In human, the parasympathetic post-ganglionic connection goes from intramural ganglion of the kidney to kidney or renal artery or upper ureter via postganglionic parasympathetic fiber. This connection projects from the intramural ganglion of the kidney.
intramural ganglion of the kidney (with-axon-in postganglionic parasympathetic fiber) (with-axon-presynaptic-element-in kidney renal artery upper ureter) neuron (implies Homo sapiens Parasympathetic Post-Ganglionic)
from intramural ganglion of the kidney to kidney or renal artery or upper ureter via postganglionic parasympathetic fiber
S2-S4 spinal cord to intramural ganglia of the kidney via pelvic splanchnic nerve via inferior hypogastric plexus via hypogastric nerve
Evidence gap: The knowledge expert noted that additional experimental evidence is needed for the parasympathetic innervation of the kidney.
In human, the parasympathetic pre-ganglionic connection goes from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to intramural ganglion of the kidney via pelvic splanchnic nerve via inferior hypogastric nerve plexus via hypogastric nerve. This connection projects from the S4 segment of sacral spinal cord, S2 segment of sacral spinal cord and S3 segment of sacral spinal cord.
S2 segment of sacral spinal cord S3 segment of sacral spinal cord S4 segment of sacral spinal cord (with-axons-in hypogastric nerve inferior hypogastric nerve plexus pelvic splanchnic nerve) (with-axon-presynaptic-element-in intramural ganglion of the kidney) (projecting-onto neuron type kidney 138) neuron (implies Homo sapiens Parasympathetic Pre-Ganglionic)
from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to intramural ganglion of the kidney via pelvic splanchnic nerve via inferior hypogastric nerve plexus via hypogastric nerve
intramural ganglia of the kidney to renal artery OR to lower ureter via postganglionic fiber
In human, the parasympathetic post-ganglionic connection goes from intramural ganglion of the kidney to lower ureter or renal artery via postganglionic parasympathetic fiber. This connection projects from the intramural ganglion of the kidney.
intramural ganglion of the kidney (with-axon-in postganglionic parasympathetic fiber) (with-axon-presynaptic-element-in lower ureter renal artery) neuron (implies Homo sapiens Parasympathetic Post-Ganglionic)
from intramural ganglion of the kidney to lower ureter or renal artery via postganglionic parasympathetic fiber
T10-L1 dorsal root ganglion with axon sensory terminal in renal artery OR kidney OR upper ureter via lesser OR least splanchnic nerve with axon terminal in the dorsal grey horn of T10-L1 spinal cord via T10-L1 dorsal roots of spinal cord
In human, the connection goes from eleventh thoracic dorsal root ganglion or first lumbar dorsal root ganglion or tenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to dorsal grey horn of L1 or dorsal grey horn of T10 or dorsal grey horn of T11 or dorsal grey horn of T12 via Posterior root of eleventh thoracic nerve, Posterior root of first lumbar nerve, Posterior root of tenth thoracic nerve, Posterior root of twelfth thoracic nerve; from eleventh thoracic dorsal root ganglion or first lumbar dorsal root ganglion or tenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to kidney or renal artery or upper ureter via least splanchnic nerve, lesser splanchnic nerve. This sensory connection projects from the eleventh thoracic dorsal root ganglion, first lumbar dorsal root ganglion, tenth thoracic dorsal root ganglion and twelfth thoracic dorsal root ganglion.
eleventh thoracic dorsal root ganglion first lumbar dorsal root ganglion tenth thoracic dorsal root ganglion twelfth thoracic dorsal root ganglion (with-axons-in Posterior root of eleventh thoracic nerve Posterior root of first lumbar nerve Posterior root of tenth thoracic nerve Posterior root of twelfth thoracic nerve) (with-axon-presynaptic-element-in dorsal grey horn of L1 dorsal grey horn of T10 dorsal grey horn of T11 dorsal grey horn of T12) (implies Homo sapiens sensory neuron)
from eleventh thoracic dorsal root ganglion or first lumbar dorsal root ganglion or tenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to dorsal grey horn of L1 or dorsal grey horn of T10 or dorsal grey horn of T11 or dorsal grey horn of T12 via Posterior root of eleventh thoracic nerve, Posterior root of first lumbar nerve, Posterior root of tenth thoracic nerve, Posterior root of twelfth thoracic nerve from eleventh thoracic dorsal root ganglion or first lumbar dorsal root ganglion or tenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to kidney or renal artery or upper ureter via least splanchnic nerve, lesser splanchnic nerve
Updated the via to include axon leading to sensory terminal with lesser and least splanchnic nerves and need to remove ILX entry for least splanchnic nerve in the anatomical entity table.\nSee https://github.com/MetaCell/sckan-composer/issues/447 \nI corrupted the anatomical entity for "dorsal grey root of T12" somehow.\nUpdated the generic "dorsal root of spinal cord" to the segment specific "posterior root of" , per Ilias. HOWEVER - there's a bug with dorsal grey horn of T12.
T9-T12 spinal cord to suprarenal ganglion OR aorticorenal ganglion via least splanchnic nerve
In mouse, the sympathetic pre-ganglionic connection goes from T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to aorticorenal ganglion or suprarenal ganglion via least splanchnic nerve. This connection projects from the T9 segment of thoracic spinal cord, T10 segment of thoracic spinal cord, T11 segment of thoracic spinal cord and T12 segment of thoracic spinal cord.
Cross-species inference: Strack (1988) study is in rats. Considering the prevertebral ganglia where pre and post ganglionic synapse it has been shown that the spinal fibers that reach the aorticorenal ganglia are T9-T12.
T10 segment of thoracic spinal cord T11 segment of thoracic spinal cord T12 segment of thoracic spinal cord T9 segment of thoracic spinal cord (with-axon-in least splanchnic nerve) (with-axon-presynaptic-element-in aorticorenal ganglion suprarenal ganglion) (projecting-onto neuron type kidney 141) neuron (implies Mus musculus Sympathetic Pre-Ganglionic)
from T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to aorticorenal ganglion or suprarenal ganglion via least splanchnic nerve
suprarenal ganglion OR aorticorenal ganglion to kidney OR mucosa of renal pelvis via postganglionic fiber
In mouse, the sympathetic post-ganglionic connection goes from aorticorenal ganglion or suprarenal ganglion to kidney or mucosa of renal pelvis via postganglionic sympathetic fiber. This connection projects from the aorticorenal ganglion and suprarenal ganglion.
aorticorenal ganglion suprarenal ganglion (with-axon-in postganglionic sympathetic fiber) (with-axon-presynaptic-element-in kidney mucosa of renal pelvis) neuron (implies Mus musculus Sympathetic Post-Ganglionic)
from aorticorenal ganglion or suprarenal ganglion to kidney or mucosa of renal pelvis via postganglionic sympathetic fiber
dorsal motor nucleus of vagus nerve to renal nerve plexus ganglion via vagus nerve via renal plexus
In mouse, the parasympathetic pre-ganglionic connection goes from dorsal motor nucleus of vagus nerve to renal nerve plexus ganglion via vagus nerve via renal nerve plexus. This connection projects from the dorsal motor nucleus of vagus nerve.
dorsal motor nucleus of vagus nerve (with-axons-in 10n renal nerve plexus) (with-axon-presynaptic-element-in renal nerve plexus ganglion) (projecting-onto neuron type kidney 143) neuron (implies Mus musculus Parasympathetic Pre-Ganglionic)
from dorsal motor nucleus of vagus nerve to renal nerve plexus ganglion via vagus nerve via renal nerve plexus
renal nerve plexus ganglion to renal artery OR segmental renal artery OR renal pelvis via postganglionic fiber
In mouse, the parasympathetic post-ganglionic connection goes from renal nerve plexus ganglion to renal artery or renal pelvis or segmental renal artery via postganglionic parasympathetic fiber. This connection projects from the renal nerve plexus ganglion.
renal nerve plexus ganglion (with-axon-in postganglionic parasympathetic fiber) (with-axon-presynaptic-element-in renal artery renal pelvis segmental renal artery) neuron (implies Mus musculus Parasympathetic Post-Ganglionic)
from renal nerve plexus ganglion to renal artery or renal pelvis or segmental renal artery via postganglionic parasympathetic fiber
Question whether we need this generic via.
T10-L2 dorsal root ganglion with axon sensory terminal in Bowman's capsule OR blood vessel of the kidney OR renal cortex via lesser OR least splanchnic nerve with axon terminal in the dorsal grey horn of T10-L2 spinal cord via T10-L2 dorsal roots of spinal cord
In mouse, the connection goes from eleventh thoracic dorsal root ganglion or first lumbar dorsal root ganglion or second lumbar dorsal root ganglion or tenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to dorsal grey horn of L1 or dorsal grey horn of L2 or dorsal grey horn of T10 or dorsal grey horn of T11 or dorsal grey horn of T12 via Posterior root of eleventh thoracic nerve, Posterior root of first lumbar nerve, Posterior root of second lumbar nerve, Posterior root of tenth thoracic nerve, Posterior root of twelfth thoracic nerve; from eleventh thoracic dorsal root ganglion or first lumbar dorsal root ganglion or second lumbar dorsal root ganglion or tenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to cortex of kidney or glomerular capsule or kidney blood vessel via least splanchnic nerve, lesser splanchnic nerve. This sensory connection projects from the eleventh thoracic dorsal root ganglion, first lumbar dorsal root ganglion, second lumbar dorsal root ganglion, tenth thoracic dorsal root ganglion and twelfth thoracic dorsal root ganglion.
eleventh thoracic dorsal root ganglion first lumbar dorsal root ganglion second lumbar dorsal root ganglion tenth thoracic dorsal root ganglion twelfth thoracic dorsal root ganglion (with-axons-in Posterior root of eleventh thoracic nerve Posterior root of first lumbar nerve Posterior root of second lumbar nerve Posterior root of tenth thoracic nerve Posterior root of twelfth thoracic nerve) (with-axon-presynaptic-element-in dorsal grey horn of L1 dorsal grey horn of L2 dorsal grey horn of T10 dorsal grey horn of T11 dorsal grey horn of T12) (implies Mus musculus sensory neuron)
from eleventh thoracic dorsal root ganglion or first lumbar dorsal root ganglion or second lumbar dorsal root ganglion or tenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to dorsal grey horn of L1 or dorsal grey horn of L2 or dorsal grey horn of T10 or dorsal grey horn of T11 or dorsal grey horn of T12 via Posterior root of eleventh thoracic nerve, Posterior root of first lumbar nerve, Posterior root of second lumbar nerve, Posterior root of tenth thoracic nerve, Posterior root of twelfth thoracic nerve from eleventh thoracic dorsal root ganglion or first lumbar dorsal root ganglion or second lumbar dorsal root ganglion or tenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to cortex of kidney or glomerular capsule or kidney blood vessel via least splanchnic nerve, lesser splanchnic nerve
updated to include lesser or least splanchnic nerves as axons leading to sensory terminal.
T12-L4 spinal cord to paravertebral sympathetic chain of T12-L3 via white rami communicating rami of T12-L4
In cat, the sympathetic pre-ganglionic connection goes from L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord or T12 segment of thoracic spinal cord or Thirteenth thoracic spinal cord segment to First lumbar ganglion or Second lumbar ganglion or Third lumbar ganglion or Thirteenth thoracic ganglion or Twelfth thoracic ganglion via white communicating ramus of first lumbar spinal nerve, white communicating ramus of second lumbar spinal nerve, white communicating ramus of third lumbar spinal nerve, white communicating ramus of thirteenth thoracic spinal nerve, white communicating ramus of twelfth thoracic spinal nerve. This connection projects from the L2 segment of lumbar spinal cord, L1 segment of lumbar spinal cord, T12 segment of thoracic spinal cord, Thirteenth thoracic spinal cord segment, L3 segment of lumbar spinal cord and L4 segment of lumbar spinal cord.
L1 segment of lumbar spinal cord L2 segment of lumbar spinal cord L3 segment of lumbar spinal cord L4 segment of lumbar spinal cord T12 segment of thoracic spinal cord T13 segment of thoracic spinal cord (with-axons-in white communicating ramus of first lumbar spinal nerve white communicating ramus of second lumbar spinal nerve white communicating ramus of third lumbar spinal nerve white communicating ramus of thirteenth thoracic spinal nerve white communicating ramus of twelfth thoracic spinal nerve) (with-axon-presynaptic-element-in L1 sympathetic chain ganglion L2 sympathetic chain ganglion L3 sympathetic chain ganglion T12 sympathetic chain ganglion T13 sympathetic chain ganglion) (projecting-onto neuron type kidney 147) neuron (implies Felis catus Sympathetic Pre-Ganglionic)
from L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord or T12 segment of thoracic spinal cord or Thirteenth thoracic spinal cord segment to First lumbar ganglion or Second lumbar ganglion or Third lumbar ganglion or Thirteenth thoracic ganglion or Twelfth thoracic ganglion via white communicating ramus of first lumbar spinal nerve, white communicating ramus of second lumbar spinal nerve, white communicating ramus of third lumbar spinal nerve, white communicating ramus of thirteenth thoracic spinal nerve, white communicating ramus of twelfth thoracic spinal nerve
paravertebral sympathetic chain of T12-L3 to kidney via least splanchnic nerve OR lumbar splanchnic nerve via renal nerve
Data source note: Information on the splanchnic nerve comes from ISBN13:978-1608312948.
In cat, the sympathetic post-ganglionic connection goes from First lumbar ganglion or Second lumbar ganglion or Third lumbar ganglion or Thirteenth thoracic ganglion or Twelfth thoracic ganglion to kidney via least splanchnic nerve, lumbar splanchnic nerve via renal nerve plexus. This connection projects from the First lumbar ganglion, Second lumbar ganglion, Third lumbar ganglion, Thirteenth thoracic ganglion and Twelfth thoracic ganglion.
L1 sympathetic chain ganglion L2 sympathetic chain ganglion L3 sympathetic chain ganglion T12 sympathetic chain ganglion T13 sympathetic chain ganglion (with-axons-in least splanchnic nerve lumbar splanchnic nerve renal nerve plexus) (with-axon-presynaptic-element-in kidney) neuron (implies Felis catus Sympathetic Post-Ganglionic)
from First lumbar ganglion or Second lumbar ganglion or Third lumbar ganglion or Thirteenth thoracic ganglion or Twelfth thoracic ganglion to kidney via least splanchnic nerve, lumbar splanchnic nerve via renal nerve plexus
T12-L4 spinal cord to superior mesenteric ganglia OR renal nerve plexus ganglion via least splanchnic nerve OR lumbar splanchnic nerve
In cat, the sympathetic pre-ganglionic connection goes from L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord or T12 segment of thoracic spinal cord or Thirteenth thoracic spinal cord segment to renal nerve plexus ganglion or superior mesenteric ganglion via least splanchnic nerve, lumbar splanchnic nerve. This connection projects from the L2 segment of lumbar spinal cord, L1 segment of lumbar spinal cord, T12 segment of thoracic spinal cord, Thirteenth thoracic spinal cord segment, L3 segment of lumbar spinal cord and L4 segment of lumbar spinal cord.
L1 segment of lumbar spinal cord L2 segment of lumbar spinal cord L3 segment of lumbar spinal cord L4 segment of lumbar spinal cord T12 segment of thoracic spinal cord T13 segment of thoracic spinal cord (with-axons-in least splanchnic nerve lumbar splanchnic nerve) (with-axon-presynaptic-element-in renal nerve plexus ganglion superior mesenteric ganglion) (projecting-onto neuron type kidney 147-1) neuron (implies Felis catus Sympathetic Pre-Ganglionic)
from L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord or T12 segment of thoracic spinal cord or Thirteenth thoracic spinal cord segment to renal nerve plexus ganglion or superior mesenteric ganglion via least splanchnic nerve, lumbar splanchnic nerve
superior mesenteric ganglia OR renal nerve plexus ganglion to kidney via renal nerve
In cat, the sympathetic post-ganglionic connection goes from renal nerve plexus ganglion or superior mesenteric ganglion to kidney via renal nerve plexus. This connection projects from the superior mesenteric ganglion and renal nerve plexus ganglion.
renal nerve plexus ganglion superior mesenteric ganglion (with-axon-in renal nerve plexus) (with-axon-presynaptic-element-in kidney) neuron (implies Felis catus Sympathetic Post-Ganglionic)
from renal nerve plexus ganglion or superior mesenteric ganglion to kidney via renal nerve plexus
L1-L3 dorsal root ganglion with axon sensory terminal in kidney via lumbar splanchnic nerve with axon terminal in the dorsal grey horn of L1-L3 spinal cord via dorsal root of spinal cord
Spatial extent: The spread of DRG cells is from T12 to L4 but 85% of them are in L1-L3.
In cat, the connection goes from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion to kidney via lumbar splanchnic nerve; from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion to dorsal grey horn of L1 or dorsal grey horn of L2 or dorsal grey horn of L3 via Posterior root of first lumbar nerve, Posterior root of second lumbar nerve, Posterior root of third lumbar nerve. This sensory connection projects from the first lumbar dorsal root ganglion, second lumbar dorsal root ganglion and third lumbar dorsal root ganglion.
first lumbar dorsal root ganglion second lumbar dorsal root ganglion third lumbar dorsal root ganglion (with-axons-in Posterior root of first lumbar nerve Posterior root of second lumbar nerve Posterior root of third lumbar nerve) (with-axon-presynaptic-element-in dorsal grey horn of L1 dorsal grey horn of L2 dorsal grey horn of L3) (implies Felis catus sensory neuron)
from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion to kidney via lumbar splanchnic nerve from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion to dorsal grey horn of L1 or dorsal grey horn of L2 or dorsal grey horn of L3 via Posterior root of first lumbar nerve, Posterior root of second lumbar nerve, Posterior root of third lumbar nerve
Added the alert note.\nupdated path to be axon leading to sensory terminal.\nupdated the path builder to add missing lumbar splanchnic nerve to the partial order.\nThis one doesn't match Fahim's population in the NLI app. [missing posterior roots]\ncreated the region(layer) pairs for the dorsal horn of the L1-3 segments. need to determine if the routing only goes through L1 ->L1, or as it is drawn here?
intermediolateral cell column of T12-L1 to paravertebral sympathetic chain of T12-L1 via white rami communicantes
In Norway rat, rat and rattus norvegicus, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of first lumbar segment or Intermediolateral nucleus of thirteenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to First lumbar ganglion or Thirteenth thoracic ganglion or Twelfth thoracic ganglion via white communicating ramus of first lumbar spinal nerve, white communicating ramus of thirteenth thoracic spinal nerve, white communicating ramus of twelfth thoracic spinal nerve. This connection projects from the Intermediolateral nucleus of first lumbar segment, Intermediolateral nucleus of thirteenth thoracic segment and Intermediolateral nucleus of twelfth thoracic segment.
Intermediolateral nucleus of first lumbar segment Intermediolateral nucleus of thirteenth thoracic segment Intermediolateral nucleus of twelfth thoracic segment (with-axons-in white communicating ramus of first lumbar spinal nerve white communicating ramus of thirteenth thoracic spinal nerve white communicating ramus of twelfth thoracic spinal nerve) (with-axon-presynaptic-element-in L1 sympathetic chain ganglion T12 sympathetic chain ganglion T13 sympathetic chain ganglion) (projecting-onto neuron type kidney 150) neuron (implies Rattus norvegicus Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of first lumbar segment or Intermediolateral nucleus of thirteenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to First lumbar ganglion or Thirteenth thoracic ganglion or Twelfth thoracic ganglion via white communicating ramus of first lumbar spinal nerve, white communicating ramus of thirteenth thoracic spinal nerve, white communicating ramus of twelfth thoracic spinal nerve
paravertebral sympathetic chain of T12-L1 to renal cortical tubules OR juxtaglomerular apparatus OR renal cortex OR efferent arterioles OR afferent arterioles OR renal cortical capillaries via least splanchnic nerve via renal plexus
In Norway rat, rat and rattus norvegicus, the sympathetic post-ganglionic connection goes from First lumbar ganglion or Thirteenth thoracic ganglion or Twelfth thoracic ganglion to cortex of kidney or juxtaglomerular apparatus or renal afferent arteriole or renal cortex peritubular capillary or renal cortex tubule or renal efferent arteriole via least splanchnic nerve via renal nerve plexus. This connection projects from the First lumbar ganglion, Thirteenth thoracic ganglion and Twelfth thoracic ganglion.
L1 sympathetic chain ganglion T12 sympathetic chain ganglion T13 sympathetic chain ganglion (with-axons-in least splanchnic nerve renal nerve plexus) (with-axon-presynaptic-element-in cortex of kidney juxtaglomerular apparatus renal afferent arteriole renal cortex peritubular capillary renal cortex tubule renal efferent arteriole) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from First lumbar ganglion or Thirteenth thoracic ganglion or Twelfth thoracic ganglion to cortex of kidney or juxtaglomerular apparatus or renal afferent arteriole or renal cortex peritubular capillary or renal cortex tubule or renal efferent arteriole via least splanchnic nerve via renal nerve plexus
intermediolateral cell column of T12-L1 to celiac-superior mesenteric ganglion complex OR suprarenal ganglia via white rami communicantes via celiac plexus
In Norway rat, rat and rattus norvegicus, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of first lumbar segment or Intermediolateral nucleus of thirteenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to celiac ganglion- superior mesenteric ganglion complex or suprarenal ganglion via white communicating ramus of first lumbar spinal nerve, white communicating ramus of thirteenth thoracic spinal nerve, white communicating ramus of twelfth thoracic spinal nerve via celiac nerve plexus. This connection projects from the Intermediolateral nucleus of first lumbar segment, Intermediolateral nucleus of thirteenth thoracic segment and Intermediolateral nucleus of twelfth thoracic segment.
Intermediolateral nucleus of first lumbar segment Intermediolateral nucleus of thirteenth thoracic segment Intermediolateral nucleus of twelfth thoracic segment (with-axons-in celiac nerve plexus white communicating ramus of first lumbar spinal nerve white communicating ramus of thirteenth thoracic spinal nerve white communicating ramus of twelfth thoracic spinal nerve) (with-axon-presynaptic-element-in CSMG suprarenal ganglion) (projecting-onto neuron type kidney 152) neuron (implies Rattus norvegicus Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of first lumbar segment or Intermediolateral nucleus of thirteenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to celiac ganglion- superior mesenteric ganglion complex or suprarenal ganglion via white communicating ramus of first lumbar spinal nerve, white communicating ramus of thirteenth thoracic spinal nerve, white communicating ramus of twelfth thoracic spinal nerve via celiac nerve plexus
celiac ganglion-superior mesenteric ganglion complex OR suprarenal ganglia to renal cortical tubules OR juxtaglomerular apparatus OR renal cortex OR efferent arterioles OR afferent arterioles OR renal cortical capillaries via renal plexus
Species variation: The suprarenal ganglion is not known to exist in human.
In rat, the sympathetic post-ganglionic connection goes from celiac ganglion- superior mesenteric ganglion complex or suprarenal ganglion to cortex of kidney or juxtaglomerular apparatus or renal afferent arteriole or renal cortex peritubular capillary or renal cortex tubule or renal efferent arteriole via renal nerve plexus. This connection projects from the celiac ganglion- superior mesenteric ganglion complex and suprarenal ganglion.
CSMG suprarenal ganglion (with-axon-in renal nerve plexus) (with-axon-presynaptic-element-in cortex of kidney juxtaglomerular apparatus renal afferent arteriole renal cortex peritubular capillary renal cortex tubule renal efferent arteriole) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from celiac ganglion- superior mesenteric ganglion complex or suprarenal ganglion to cortex of kidney or juxtaglomerular apparatus or renal afferent arteriole or renal cortex peritubular capillary or renal cortex tubule or renal efferent arteriole via renal nerve plexus
Added update note to indicate that the suprarenal ganglion doesn't exist in human. We may also include a statement to say that fibers goes to the adrenal cortex?
left T8-L2 dorsal root ganglion with axon sensory terminal in left kidney via lumbar splanchnic nerve with axon terminal in the dorsal grey horn of left T8-L2 spinal cord via T8-L2 dorsal roots of spinal cord
Spatial extent: In Ciriello (1983) https://doi.org/10.1016/0165-1838(83)90110-8 (Figures 1 and 2) the greatest number of cells was found in T10 and T13. The spread of cell found were from T8 to L2.
In rat, the connection goes from Left eighth thoracic spinal ganglion or Left eleventh thoracic spinal ganglion or Left first lumbar spinal ganglion or Left ninth thoracic spinal ganglion or Left second lumbar spinal ganglion or Left tenth thoracic spinal ganglion or Left thirteenth thoracic spinal ganglion or Left twelfth thoracic spinal ganglion to dorsal grey horn of left L1 or dorsal grey horn of left L2 or dorsal grey horn of left T10 or dorsal grey horn of left T11 or dorsal grey horn of left T12 or dorsal grey horn of left T13 or dorsal grey horn of left T8 or dorsal grey horn of left T9 via Posterior root of left eighth thoracic nerve, Posterior root of left eleventh thoracic nerve, Posterior root of left first lumbar nerve, Posterior root of left ninth thoracic nerve, Posterior root of left second lumbar nerve, Posterior root of left tenth thoracic nerve, Posterior root of left thirteenth thoracic nerve, Posterior root of left twelfth thoracic nerve; from Left eighth thoracic spinal ganglion or Left eleventh thoracic spinal ganglion or Left first lumbar spinal ganglion or Left ninth thoracic spinal ganglion or Left second lumbar spinal ganglion or Left tenth thoracic spinal ganglion or Left thirteenth thoracic spinal ganglion or Left twelfth thoracic spinal ganglion to left kidney via lumbar splanchnic nerve. This sensory connection projects from the Left eighth thoracic spinal ganglion, Left tenth thoracic spinal ganglion, Left eleventh thoracic spinal ganglion, Left first lumbar spinal ganglion, Left thirteenth thoracic spinal ganglion, Left twelfth thoracic spinal ganglion, Left second lumbar spinal ganglion and Left ninth thoracic spinal ganglion and is found on the left side of the body.
The reference that spinal sensory neurons travel via splanchnic nerves come from Anatomy, Back, Splanchnic Nerve https://www.ncbi.nlm.nih.gov/books/NBK549856/.
Left eighth thoracic spinal ganglion Left eleventh thoracic spinal ganglion Left first lumbar spinal ganglion Left ninth thoracic spinal ganglion Left second lumbar spinal ganglion Left tenth thoracic spinal ganglion Left thirteenth thoracic spinal ganglion Left twelfth thoracic spinal ganglion (with-axons-in Posterior root of left eighth thoracic nerve Posterior root of left eleventh thoracic nerve Posterior root of left first lumbar nerve Posterior root of left ninth thoracic nerve Posterior root of left second lumbar nerve Posterior root of left tenth thoracic nerve Posterior root of left thirteenth thoracic nerve Posterior root of left twelfth thoracic nerve) (with-axon-presynaptic-element-in dorsal grey horn of left L1 dorsal grey horn of left L2 dorsal grey horn of left T10 dorsal grey horn of left T11 dorsal grey horn of left T12 dorsal grey horn of left T13 dorsal grey horn of left T8 dorsal grey horn of left T9) Left (implies Rattus norvegicus sensory neuron)
from Left eighth thoracic spinal ganglion or Left eleventh thoracic spinal ganglion or Left first lumbar spinal ganglion or Left ninth thoracic spinal ganglion or Left second lumbar spinal ganglion or Left tenth thoracic spinal ganglion or Left thirteenth thoracic spinal ganglion or Left twelfth thoracic spinal ganglion to dorsal grey horn of left L1 or dorsal grey horn of left L2 or dorsal grey horn of left T10 or dorsal grey horn of left T11 or dorsal grey horn of left T12 or dorsal grey horn of left T13 or dorsal grey horn of left T8 or dorsal grey horn of left T9 via Posterior root of left eighth thoracic nerve, Posterior root of left eleventh thoracic nerve, Posterior root of left first lumbar nerve, Posterior root of left ninth thoracic nerve, Posterior root of left second lumbar nerve, Posterior root of left tenth thoracic nerve, Posterior root of left thirteenth thoracic nerve, Posterior root of left twelfth thoracic nerve from Left eighth thoracic spinal ganglion or Left eleventh thoracic spinal ganglion or Left first lumbar spinal ganglion or Left ninth thoracic spinal ganglion or Left second lumbar spinal ganglion or Left tenth thoracic spinal ganglion or Left thirteenth thoracic spinal ganglion or Left twelfth thoracic spinal ganglion to left kidney via lumbar splanchnic nerve
updated lumbar splanchnic nerve to be axon leading to sensory terminal.
right T6-T13 dorsal root ganglion with axon sensory terminal in right kidney via lumbar splanchnic nerve with axon terminal in the dorsal grey horn of right T6-T13 spinal cord via T6-T13 dorsal roots of spinal cord
Spatial extent: In Ciriello (1983) https://doi.org/10.1016/0165-1838(83)90110-8 (Figures 1 and 2) the greatest number of cells was found in T7-T9 and T11-T12. All cells were found from T6 to T13. Data source note: The reference that spinal sensory neurons travel via splanchnic nerves come from Anatomy, Back, Splanchnic Nerve https://www.ncbi.nlm.nih.gov/books/NBK549856/.
In rat, the connection goes from Right eighth thoracic spinal ganglion or Right eleventh thoracic spinal ganglion or Right ninth thoracic spinal ganglion or Right seventh thoracic spinal ganglion or Right sixth thoracic spinal ganglion or Right tenth thoracic spinal ganglion or Right thirteenth thoracic spinal ganglion or Right twelfth thoracic spinal ganglion to dorsal grey horn of right T10 or dorsal grey horn of right T11 or dorsal grey horn of right T12 or dorsal grey horn of right T13 or dorsal grey horn of right T6 or dorsal grey horn of right T7 or dorsal grey horn of right T8 or dorsal grey horn of right T9 via Posterior root of right eighth thoracic nerve, Posterior root of right eleventh thoracic nerve, Posterior root of right ninth thoracic nerve, Posterior root of right seventh thoracic nerve, Posterior root of right sixth thoracic nerve, Posterior root of right tenth thoracic nerve, Posterior root of right thirteenth thoracic nerve, Posterior root of right twelfth thoracic nerve; from Right eighth thoracic spinal ganglion or Right eleventh thoracic spinal ganglion or Right ninth thoracic spinal ganglion or Right seventh thoracic spinal ganglion or Right sixth thoracic spinal ganglion or Right tenth thoracic spinal ganglion or Right thirteenth thoracic spinal ganglion or Right twelfth thoracic spinal ganglion to right kidney via lumbar splanchnic nerve. This sensory connection projects from the Right seventh thoracic spinal ganglion, Right sixth thoracic spinal ganglion, Right eighth thoracic spinal ganglion, Right twelfth thoracic spinal ganglion, Right tenth thoracic spinal ganglion, Right ninth thoracic spinal ganglion, Right thirteenth thoracic spinal ganglion and Right eleventh thoracic spinal ganglion and is found on the right side of the body.
Data source note: The reference that spinal sensory neurons travel via splanchnic nerves come from Anatomy, Back, Splanchnic Nerve https://www.ncbi.nlm.nih.gov/books/NBK549856/.
Right eighth thoracic spinal ganglion Right eleventh thoracic spinal ganglion Right ninth thoracic spinal ganglion Right seventh thoracic spinal ganglion Right sixth thoracic spinal ganglion Right tenth thoracic spinal ganglion Right thirteenth thoracic spinal ganglion Right twelfth thoracic spinal ganglion (with-axons-in Posterior root of right eighth thoracic nerve Posterior root of right eleventh thoracic nerve Posterior root of right ninth thoracic nerve Posterior root of right seventh thoracic nerve Posterior root of right sixth thoracic nerve Posterior root of right tenth thoracic nerve Posterior root of right thirteenth thoracic nerve Posterior root of right twelfth thoracic nerve) (with-axon-presynaptic-element-in dorsal grey horn of right T10 dorsal grey horn of right T11 dorsal grey horn of right T12 dorsal grey horn of right T13 dorsal grey horn of right T6 dorsal grey horn of right T7 dorsal grey horn of right T8 dorsal grey horn of right T9) right (implies Rattus norvegicus sensory neuron)
from Right eighth thoracic spinal ganglion or Right eleventh thoracic spinal ganglion or Right ninth thoracic spinal ganglion or Right seventh thoracic spinal ganglion or Right sixth thoracic spinal ganglion or Right tenth thoracic spinal ganglion or Right thirteenth thoracic spinal ganglion or Right twelfth thoracic spinal ganglion to dorsal grey horn of right T10 or dorsal grey horn of right T11 or dorsal grey horn of right T12 or dorsal grey horn of right T13 or dorsal grey horn of right T6 or dorsal grey horn of right T7 or dorsal grey horn of right T8 or dorsal grey horn of right T9 via Posterior root of right eighth thoracic nerve, Posterior root of right eleventh thoracic nerve, Posterior root of right ninth thoracic nerve, Posterior root of right seventh thoracic nerve, Posterior root of right sixth thoracic nerve, Posterior root of right tenth thoracic nerve, Posterior root of right thirteenth thoracic nerve, Posterior root of right twelfth thoracic nerve from Right eighth thoracic spinal ganglion or Right eleventh thoracic spinal ganglion or Right ninth thoracic spinal ganglion or Right seventh thoracic spinal ganglion or Right sixth thoracic spinal ganglion or Right tenth thoracic spinal ganglion or Right thirteenth thoracic spinal ganglion or Right twelfth thoracic spinal ganglion to right kidney via lumbar splanchnic nerve
I had to remove the dorsal grey horn of right L1. It was mistakenly in the modeling.\nupdated lumbar splanchnic nerve to be axon leading to sensory terminal.
nodose ganglion with axon sensory terminal in kidney via abdominal branch of vagus nerve with axon terminal in nucleus of the tractus solitarius via vagus nerve
In rat, the connection goes from inferior vagus X ganglion to nucleus of solitary tract via vagus nerve; from inferior vagus X ganglion to kidney via abdominal branch of vagus nerve. This sensory connection projects from the inferior vagus X ganglion.
from inferior vagus X ganglion to nucleus of solitary tract via vagus nerve from inferior vagus X ganglion to kidney via abdominal branch of vagus nerve
Added abdominal branch of vagus nerve as Axon to PNS\nthis needs to list root of vagus nerve as the centrally projecting vagus nerve; while vagus nerve is axon leading to sensory project. I didn't modify this in order to permit a clean round trip. it should be revisited.
intermediolateral cell column of T7-T12 spinal cord to celiac-superior mesenteric ganglia via thoracic splanchnic nerves
Cross-species inference: The information mentioned in several of the sources on the origin of preganglionic spinal sympathetic fibers seem to be coming from Magni et al., (1983) https://doi.org/10.1016/0165-1838(83)90108-X were they showed that afferent fibers in rats come from T7-T12. The spinal levels are the same in humans. Considering the pre-ganglionic and post-ganglionic fibers meet in the celiac ganglia it has been shown that the spinal fibers that reach there are T5-T12 with an epicenter mostly T7-T12 [Strack (1988) http://dx.doi.org/10.1016/0006-8993(88)90132-1]. Laterality difference: There is laterality in the routing of postganglionic populations.
In rat, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of eleventh thoracic segment or Intermediolateral nucleus of ninth thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of tenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to celiac ganglion- superior mesenteric ganglion complex via thoracic splanchnic nerve. This connection projects from the Intermediolateral nucleus of eighth thoracic segment, Intermediolateral nucleus of eleventh thoracic segment, Intermediolateral nucleus of ninth thoracic segment, Intermediolateral nucleus of seventh thoracic segment, Intermediolateral nucleus of tenth thoracic segment and Intermediolateral nucleus of twelfth thoracic segment.
Intermediolateral nucleus of eighth thoracic segment Intermediolateral nucleus of eleventh thoracic segment Intermediolateral nucleus of ninth thoracic segment Intermediolateral nucleus of seventh thoracic segment Intermediolateral nucleus of tenth thoracic segment Intermediolateral nucleus of twelfth thoracic segment (with-axon-in thoracic splanchnic nerve) (with-axon-presynaptic-element-in CSMG) (projecting-onto neuron type liver 106 neuron type liver 108) neuron (implies Rattus norvegicus Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of eleventh thoracic segment or Intermediolateral nucleus of ninth thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of tenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to celiac ganglion- superior mesenteric ganglion complex via thoracic splanchnic nerve
celiac-superior mesenteric ganglia to hepatic artery via periarterial neural plexus of the common hepatic artery via anterior hepatic plexus
In Norway rat, rat and rattus norvegicus, the sympathetic post-ganglionic connection goes from celiac ganglion- superior mesenteric ganglion complex to hepatic artery via periarterial neural plexus of the common hepatic artery via anterior hepatic neural plexus. This connection projects from the celiac ganglion- superior mesenteric ganglion complex.
CSMG (with-axons-in anterior hepatic neural plexus periarterial neural plexus of the common hepatic artery) (with-axon-presynaptic-element-in hepatic artery) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from celiac ganglion- superior mesenteric ganglion complex to hepatic artery via periarterial neural plexus of the common hepatic artery via anterior hepatic neural plexus
This is missing an entity, in A2BvC, the periarterial neural plexus of the common hepatic artery is listed, but not included in the path. How come?
celiac-superior mesenteric ganglia to portal vein OR bile duct via posterior hepatic plexus
In Norway rat, rat and rattus norvegicus, the sympathetic post-ganglionic connection goes from celiac ganglion- superior mesenteric ganglion complex to portal vein via posterior hepatic neural plexus. This connection projects from the celiac ganglion- superior mesenteric ganglion complex.
There might be a laterality information that I found indirectly so I added the population as in parasympathetic it has been demonstrated. Alexander W (1940) https://doi.org/10.1002/cne.900720205 mentioned "The posterior plexus is composed of rami from the right celiac ganglion and the right vagus nerve. It is associated with the portal vein". However no other source indicates laterality in sympathetic connections.
CSMG (with-axon-in posterior hepatic neural plexus) (with-axon-presynaptic-element-in portal vein) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from celiac ganglion- superior mesenteric ganglion complex to portal vein via posterior hepatic neural plexus
dorsal motor nucleus to ganglia located at the hepatic hilus and within the portal spaces via left cervical vagus nerve via anterior abdominal vagal trunk via hepatic branch of left vagus nerve
Laterality difference: The pathway travels through a lateralized route.
In Norway rat, rat and rattus norvegicus, the parasympathetic pre-ganglionic connection goes from dorsal motor nucleus of vagus nerve to parasympathetic ganglia of the liver via left cervical vagus nerve via anterior abdominal vagal trunk via Hepatic branch of left vagus nerve. This connection projects from the dorsal motor nucleus of vagus nerve.
dorsal motor nucleus of vagus nerve (with-axons-in Hepatic branch of left vagus nerve anterior abdominal vagal trunk left cervical vagus nerve) (with-axon-presynaptic-element-in parasympathetic ganglia of the liver) (projecting-onto neuron type liver 110) neuron (implies Rattus norvegicus Parasympathetic Pre-Ganglionic)
from dorsal motor nucleus of vagus nerve to parasympathetic ganglia of the liver via left cervical vagus nerve via anterior abdominal vagal trunk via Hepatic branch of left vagus nerve
Duplicated population with NPO-IZ-122 in humans.
ganglia located at the hepatic hilus and within the portal spaces to hepatic artery via periarterial neural plexus of the common hepatic artery via anterior hepatic plexus
In Norway rat, rat and rattus norvegicus, the parasympathetic post-ganglionic connection goes from parasympathetic ganglia of the liver to hepatic artery via periarterial neural plexus of the common hepatic artery via anterior hepatic neural plexus. This connection projects from the parasympathetic ganglia of the liver.
parasympathetic ganglia of the liver (with-axons-in anterior hepatic neural plexus periarterial neural plexus of the common hepatic artery) (with-axon-presynaptic-element-in hepatic artery) neuron (implies Rattus norvegicus Parasympathetic Post-Ganglionic)
from parasympathetic ganglia of the liver to hepatic artery via periarterial neural plexus of the common hepatic artery via anterior hepatic neural plexus
this seems to be missing a via from the A2BvC label. which should be adjusted?\nDuplicate populations with NPO-IZ-123 in humans.
nucleus ambiguus to ganglia located at the hepatic hilus and within the portal spaces via right cervical vagus nerve via posterior abdominal vagal trunk via posterior hepatic branch of vagus nerve
In Norway rat, rat and rattus norvegicus, the parasympathetic pre-ganglionic connection goes from nucleus ambiguus to parasympathetic ganglia of the liver via right cervical vagus nerve via posterior abdominal vagal trunk via posterior hepatic branch of vagus nerve. This connection projects from the nucleus ambiguus.
Amb (with-axons-in posterior abdominal vagal trunk posterior hepatic branch of vagus nerve right cervical vagus nerve) (with-axon-presynaptic-element-in parasympathetic ganglia of the liver) (projecting-onto neuron type liver 112) neuron (implies Rattus norvegicus Parasympathetic Pre-Ganglionic)
from nucleus ambiguus to parasympathetic ganglia of the liver via right cervical vagus nerve via posterior abdominal vagal trunk via posterior hepatic branch of vagus nerve
Should we note this as "Leterality"? @sue
ganglia located at the hepatic hilus and within the portal spaces to portal vein OR bile duct via posterior hepatic plexus
In Norway rat, rat and rattus norvegicus, the parasympathetic post-ganglionic connection goes from parasympathetic ganglia of the liver to bile duct or portal vein via posterior hepatic neural plexus. This connection projects from the parasympathetic ganglia of the liver.
The laterality information is confirmed by Alexander W (1940) https://doi.org/10.1002/cne.900720205 mentioned "The posterior plexus is composed of rami from the right celiac ganglion and the right vagus nerve. It is associated with the portal vein". However no other source indicates laterality in sympathetic connections.
parasympathetic ganglia of the liver (with-axon-in posterior hepatic neural plexus) (with-axon-presynaptic-element-in bile duct portal vein) neuron (implies Rattus norvegicus Parasympathetic Post-Ganglionic)
from parasympathetic ganglia of the liver to bile duct or portal vein via posterior hepatic neural plexus
Duplicate population with NPO-IZ-125 in humans.
T7-T13 dorsal root ganglion with axon sensory terminal in portal vein OR bile duct OR portal region via thoracic splanchnic nerve with axon terminal in the dorsal grey horn of T7-T13 spinal cord via T7-T13 dorsal roots of spinal cord
Spatial extent: The review paper by Berthoud covers both liver and stomach and does not share reference for the spinal origin T7-T13. On the contrary, Magni et al they explicitly traced afferents of the liver and report T7-T12. Data source note: The reference that spinal sensory neurons travel via splanchnic nerves come from Anatomy, Back, Splanchnic Nerve https://www.ncbi.nlm.nih.gov/books/NBK549856/. Information on the splanchnic nerve comes from ISBN13:978-1608312948.
In rat, the connection goes from eighth thoracic dorsal root ganglion or eleventh thoracic dorsal root ganglion or ninth thoracic dorsal root ganglion or seventh thoracic dorsal root ganglion or tenth thoracic dorsal root ganglion or thirteenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to dorsal grey horn of T10 or dorsal grey horn of T11 or dorsal grey horn of T12 or dorsal grey horn of T13 or dorsal grey horn of T7 or dorsal grey horn of T8 or dorsal grey horn of T9 via Posterior root of eighth thoracic nerve, Posterior root of eleventh thoracic nerve, Posterior root of ninth thoracic nerve, Posterior root of seventh thoracic nerve, Posterior root of tenth thoracic nerve, Posterior root of thirteenth thoracic nerve, Posterior root of twelfth thoracic nerve; from eighth thoracic dorsal root ganglion or eleventh thoracic dorsal root ganglion or ninth thoracic dorsal root ganglion or seventh thoracic dorsal root ganglion or tenth thoracic dorsal root ganglion or thirteenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to bile duct or portal triad or portal vein via thoracic splanchnic nerve. This sensory connection projects from the eighth thoracic dorsal root ganglion, eleventh thoracic dorsal root ganglion, ninth thoracic dorsal root ganglion, seventh thoracic dorsal root ganglion, tenth thoracic dorsal root ganglion, thirteenth thoracic dorsal root ganglion and twelfth thoracic dorsal root ganglion.
eighth thoracic dorsal root ganglion eleventh thoracic dorsal root ganglion ninth thoracic dorsal root ganglion seventh thoracic dorsal root ganglion tenth thoracic dorsal root ganglion thirteenth thoracic dorsal root ganglion twelfth thoracic dorsal root ganglion (with-axons-in Posterior root of eighth thoracic nerve Posterior root of eleventh thoracic nerve Posterior root of ninth thoracic nerve Posterior root of seventh thoracic nerve Posterior root of tenth thoracic nerve Posterior root of thirteenth thoracic nerve Posterior root of twelfth thoracic nerve) (with-axon-presynaptic-element-in dorsal grey horn of T10 dorsal grey horn of T11 dorsal grey horn of T12 dorsal grey horn of T13 dorsal grey horn of T7 dorsal grey horn of T8 dorsal grey horn of T9) (implies Rattus norvegicus sensory neuron)
from eighth thoracic dorsal root ganglion or eleventh thoracic dorsal root ganglion or ninth thoracic dorsal root ganglion or seventh thoracic dorsal root ganglion or tenth thoracic dorsal root ganglion or thirteenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to dorsal grey horn of T10 or dorsal grey horn of T11 or dorsal grey horn of T12 or dorsal grey horn of T13 or dorsal grey horn of T7 or dorsal grey horn of T8 or dorsal grey horn of T9 via Posterior root of eighth thoracic nerve, Posterior root of eleventh thoracic nerve, Posterior root of ninth thoracic nerve, Posterior root of seventh thoracic nerve, Posterior root of tenth thoracic nerve, Posterior root of thirteenth thoracic nerve, Posterior root of twelfth thoracic nerve from eighth thoracic dorsal root ganglion or eleventh thoracic dorsal root ganglion or ninth thoracic dorsal root ganglion or seventh thoracic dorsal root ganglion or tenth thoracic dorsal root ganglion or thirteenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to bile duct or portal triad or portal vein via thoracic splanchnic nerve
Added Axon to PNS.\nTHIS IS MISSING A T13 destination. Left it in order to make it match for round trip, but should be addressed after. Updated the modeling to include thoracic splanchnic nerve as axon leading to sensory terminal.\nWrong comment below\nPopulations exists in humans too NPO-IZ-126.\nLooked at first reference and see that T13 is in figure one, so I added it. However, i can't seem to find T12 dorsal horn in the anatomical table (but it says it exists). this is a composer bug.\nBecause this is RAT, shouldn't this have a T13 in the modeling? I included the posterior root, but didn't add the DRG or spinal cord in case there was a specific reason. Please review.\nremoved "dorsal root of spinal cord" in favor of segment specific posterior roots, per ilias.
left nodose ganglion with axon sensory terminal in hilus of the liver OR bile duct OR portal vein via anterior abdominal vagal trunk with axon terminal in nucleus of solitary tract via vagus nerve
Laterality difference: The origin of the population is lateralized.
In rat, the connection goes from left nodose ganglion to bile duct or hilar portion of hepatic duct or portal vein via anterior abdominal vagal trunk; from left nodose ganglion to nucleus of solitary tract via vagus nerve. This sensory connection projects from the left nodose ganglion.
left nodose ganglion (with-axon-in 10n) (with-axon-presynaptic-element-in nucleus of solitary tract) (implies Rattus norvegicus sensory neuron)
from left nodose ganglion to bile duct or hilar portion of hepatic duct or portal vein via anterior abdominal vagal trunk from left nodose ganglion to nucleus of solitary tract via vagus nerve
updated to include anterior abdominal vagal trunk as axon leading to sensory terminal.\n@ilias and folk: when the vagus is the nerve on both to CNS and PNS, can we update one of them to use more granular terms? It will make the drawing more informative.
right nodose ganglion with axon sensory terminal in bile duct OR portal vein via periarterial plexus of the common hepatic artery via dorsal celiac branch via posterior abdominal vagal trunk with axon terminal in nucleus of solitary tract via vagus nerve
In rat, the connection goes from right nodose ganglion to bile duct or portal vein via periarterial neural plexus of the common hepatic artery via Celiac branch of posterior vagal trunk via posterior abdominal vagal trunk; from right nodose ganglion to nucleus of solitary tract via vagus nerve. This sensory connection projects from the right nodose ganglion and is found on the right side of the body.
right nodose ganglion (with-axon-in 10n) (with-axon-presynaptic-element-in nucleus of solitary tract) right (implies Rattus norvegicus sensory neuron)
from right nodose ganglion to bile duct or portal vein via periarterial neural plexus of the common hepatic artery via Celiac branch of posterior vagal trunk via posterior abdominal vagal trunk from right nodose ganglion to nucleus of solitary tract via vagus nerve
updated to model peripheral nerves as axons leading to sensory terminal.
intermediolateral cell column of T7-T10 spinal cord to left celiac ganglion or left superior mesenteric ganglion via greater splanchnic nerve
Laterality difference: The destination of the population is lateralized.
In human, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of ninth thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of tenth thoracic segment to left celiac ganglion or left superior mesenteric ganglion via greater splanchnic nerve. This connection projects from the Intermediolateral nucleus of eighth thoracic segment, Intermediolateral nucleus of ninth thoracic segment, Intermediolateral nucleus of seventh thoracic segment and Intermediolateral nucleus of tenth thoracic segment.
Intermediolateral nucleus of eighth thoracic segment Intermediolateral nucleus of ninth thoracic segment Intermediolateral nucleus of seventh thoracic segment Intermediolateral nucleus of tenth thoracic segment (with-axon-in greater splanchnic nerve) (with-axon-presynaptic-element-in left celiac ganglion left superior mesenteric ganglion) (projecting-onto neuron type liver 117) neuron (implies Homo sapiens Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of ninth thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of tenth thoracic segment to left celiac ganglion or left superior mesenteric ganglion via greater splanchnic nerve
left celiac ganglion or left superior mesenteric ganglion to smooth muscle of hepatic artery via periarterial neural plexus of the common hepatic artery via anterior hepatic plexus
In human, the sympathetic post-ganglionic connection goes from left celiac ganglion or left superior mesenteric ganglion to smooth muscle of hepatic artery via periarterial neural plexus of the common hepatic artery via anterior hepatic neural plexus. This connection projects from the left celiac ganglion and left superior mesenteric ganglion and is found on the left side of the body.
left celiac ganglion left superior mesenteric ganglion (with-axons-in anterior hepatic neural plexus periarterial neural plexus of the common hepatic artery) (with-axon-presynaptic-element-in smooth muscle of hepatic artery) Left neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from left celiac ganglion or left superior mesenteric ganglion to smooth muscle of hepatic artery via periarterial neural plexus of the common hepatic artery via anterior hepatic neural plexus
Split the celiac-SMG complex into 2 separate entities as this is the case in humans.\n@ziogasilias@gmail.com if this is in humans should be 2 separate destinations. 1. right celiac ganglion and 2. right SMG since in humans there is no complex of these ganglia as in rodents.
intermediolateral cell column of T7-T10 spinal cord to right celiac ganglion or right superior mesenteric ganglion via greater splanchnic nerve
In human, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of ninth thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of tenth thoracic segment to right celiac ganglion or right superior mesenteric ganglion via greater splanchnic nerve. This connection projects from the Intermediolateral nucleus of eighth thoracic segment, Intermediolateral nucleus of ninth thoracic segment, Intermediolateral nucleus of seventh thoracic segment and Intermediolateral nucleus of tenth thoracic segment and is found on the right side of the body.
Intermediolateral nucleus of eighth thoracic segment Intermediolateral nucleus of ninth thoracic segment Intermediolateral nucleus of seventh thoracic segment Intermediolateral nucleus of tenth thoracic segment (with-axon-in greater splanchnic nerve) (with-axon-presynaptic-element-in right celiac ganglion right superior mesenteric ganglion) right (projecting-onto neuron type liver 119) neuron (implies Homo sapiens Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of ninth thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of tenth thoracic segment to right celiac ganglion or right superior mesenteric ganglion via greater splanchnic nerve
Split the celiac-SMG complex because this is the case in humans.\n@ziogasilias@gmail.com if this is in humans should be 2 separate destinations. 1. right celiac ganglion and 2. right SMG since in humans there is no complex of these ganglia as in rodents.
right celiac ganglion or right superior mesenteric ganglion to smooth muscle of portal vein OR bile duct epithelium OR peribiliary gland via posterior hepatic plexus
In human, the sympathetic post-ganglionic connection goes from right celiac ganglion or right superior mesenteric ganglion to bile duct epithelium or peribiliary gland or smooth muscle of portal vein via posterior hepatic neural plexus. This connection projects from the right celiac ganglion and right superior mesenteric ganglion.
right celiac ganglion right superior mesenteric ganglion (with-axon-in posterior hepatic neural plexus) (with-axon-presynaptic-element-in bile duct epithelium peribiliary gland smooth muscle of portal vein) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from right celiac ganglion or right superior mesenteric ganglion to bile duct epithelium or peribiliary gland or smooth muscle of portal vein via posterior hepatic neural plexus
Split celiac-SMG complex into 2 separate entities because this is the case in humans.\n@ziogasilias@gmail.com if this is in humans should be 2 separate destinations. 1. right celiac ganglion and 2. right SMG since in humans there is no complex of these ganglia as in rodents.
intermediolateral cell column of T7-T10 spinal cord to celiac ganglion or superior mesenteric ganglion via greater splanchnic nerve
In human, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of ninth thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of tenth thoracic segment to celiac ganglion or superior mesenteric ganglion via greater splanchnic nerve. This connection projects from the Intermediolateral nucleus of eighth thoracic segment, Intermediolateral nucleus of ninth thoracic segment, Intermediolateral nucleus of seventh thoracic segment and Intermediolateral nucleus of tenth thoracic segment.
Intermediolateral nucleus of eighth thoracic segment Intermediolateral nucleus of ninth thoracic segment Intermediolateral nucleus of seventh thoracic segment Intermediolateral nucleus of tenth thoracic segment (with-axon-in greater splanchnic nerve) (with-axon-presynaptic-element-in celiac ganglion superior mesenteric ganglion) (projecting-onto neuron type liver 121) neuron (implies Homo sapiens Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of ninth thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of tenth thoracic segment to celiac ganglion or superior mesenteric ganglion via greater splanchnic nerve
celiac ganglion or superior mesenteric ganglion to liver lobule OR hepatic sinusoid OR hepatic acini OR hepatocytes OR space of Disse via hepatic plexus
In human, the sympathetic post-ganglionic connection goes from celiac ganglion or superior mesenteric ganglion to hepatic acinus or hepatic sinusoid or liver lobule or liver perisinusoidal space via hepatic plexus. This connection projects from the celiac ganglion and superior mesenteric ganglion.
10/30/25 [ST]: Removing CL cells from forward connections. this modeling will need to be revisited once we determine the proper axiom for it. 10/15/25 [ST]: Added the hepatocyte as a Cell Type forward connection.
celiac ganglion superior mesenteric ganglion (with-axon-in hepatic plexus) (with-axon-presynaptic-element-in hepatic acinus hepatic sinusoid liver lobule liver perisinusoidal space) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from celiac ganglion or superior mesenteric ganglion to hepatic acinus or hepatic sinusoid or liver lobule or liver perisinusoidal space via hepatic plexus
Removed forward connection to a hepatocyte (CL:0000182). See note on 10/30/25.\n10/30/25 [ST]: Removing CL cells from forward connections. this modeling will need to be revisited once we determine the proper axiom for it.\nI have added hepatocyte as a Cell Type forward connection (with the predicate, hasForwardConnection) to this population.\nHow can we deal with the cells as FC here?\nHAS CELL as forward connection. this isn't permitted. need to revisit\nSplit celiac-SMG complex because it is separate in humans.\n@ziogasilias@gmail.com change origin and separate to 1. celiac ganglion and 2. SMG because it is in humans.
In human, the parasympathetic pre-ganglionic connection goes from dorsal motor nucleus of vagus nerve to parasympathetic ganglia of the liver via left cervical vagus nerve via anterior abdominal vagal trunk via Hepatic branch of left vagus nerve. This connection projects from the dorsal motor nucleus of vagus nerve and is found on the left side of the body.
dorsal motor nucleus of vagus nerve (with-axons-in Hepatic branch of left vagus nerve anterior abdominal vagal trunk left cervical vagus nerve) (with-axon-presynaptic-element-in parasympathetic ganglia of the liver) Left (projecting-onto neuron type liver 123) neuron (implies Homo sapiens Parasympathetic Pre-Ganglionic)
In human, the parasympathetic post-ganglionic connection goes from parasympathetic ganglia of the liver to hepatic artery via anterior hepatic neural plexus. This connection projects from the parasympathetic ganglia of the liver.
parasympathetic ganglia of the liver (with-axon-in anterior hepatic neural plexus) (with-axon-presynaptic-element-in hepatic artery) neuron (implies Homo sapiens Parasympathetic Post-Ganglionic)
from parasympathetic ganglia of the liver to hepatic artery via anterior hepatic neural plexus
Population duplicated with the rat NPO-IZ-110.
dorsal motor nucleus to ganglia located at the hepatic hilus and within the portal spaces via right cervical vagus nerve via posterior abdominal vagal trunk via posterior hepatic branch of vagus nerve
In human, the parasympathetic pre-ganglionic connection goes from dorsal motor nucleus of vagus nerve to parasympathetic ganglia of the liver via right cervical vagus nerve via posterior abdominal vagal trunk via posterior hepatic branch of vagus nerve. This connection projects from the dorsal motor nucleus of vagus nerve.
dorsal motor nucleus of vagus nerve (with-axons-in posterior abdominal vagal trunk posterior hepatic branch of vagus nerve right cervical vagus nerve) (with-axon-presynaptic-element-in parasympathetic ganglia of the liver) (projecting-onto neuron type liver 125) neuron (implies Homo sapiens Parasympathetic Pre-Ganglionic)
from dorsal motor nucleus of vagus nerve to parasympathetic ganglia of the liver via right cervical vagus nerve via posterior abdominal vagal trunk via posterior hepatic branch of vagus nerve
can't seem to add posterior hepatic branch of liver to the model. Backend says it's present in the anatomy table. ?
In human, the parasympathetic post-ganglionic connection goes from parasympathetic ganglia of the liver to bile duct or portal vein via posterior hepatic neural plexus. This connection projects from the parasympathetic ganglia of the liver.
parasympathetic ganglia of the liver (with-axon-in posterior hepatic neural plexus) (with-axon-presynaptic-element-in bile duct portal vein) neuron (implies Homo sapiens Parasympathetic Post-Ganglionic)
This population is duplicated with the populations NPO-IZ-112 in rats.
T7-T12 dorsal root ganglion with axon sensory terminal in portal vein OR bile duct OR portal region via thoracic splanchnic nerve with axon terminal in the dorsal grey horn of T7-T12 spinal cord via T7-T12 dorsal roots of spinal cord
Data source note: The reference that spinal sensory neurons travel via splanchnic nerves come from Anatomy, Back, Splanchnic Nerve https://www.ncbi.nlm.nih.gov/books/NBK549856/. Information on the splanchnic nerve comes from ISBN13:978-1608312948.
In human, the connection goes from eighth thoracic dorsal root ganglion or eleventh thoracic dorsal root ganglion or ninth thoracic dorsal root ganglion or seventh thoracic dorsal root ganglion or tenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to dorsal grey horn of T10 or dorsal grey horn of T11 or dorsal grey horn of T12 or dorsal grey horn of T7 or dorsal grey horn of T8 or dorsal grey horn of T9 via Posterior root of eighth thoracic nerve, Posterior root of eleventh thoracic nerve, Posterior root of ninth thoracic nerve, Posterior root of seventh thoracic nerve, Posterior root of tenth thoracic nerve, Posterior root of twelfth thoracic nerve; from eighth thoracic dorsal root ganglion or eleventh thoracic dorsal root ganglion or ninth thoracic dorsal root ganglion or seventh thoracic dorsal root ganglion or tenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to bile duct or portal triad or portal vein via thoracic splanchnic nerve. This sensory connection projects from the eighth thoracic dorsal root ganglion, eleventh thoracic dorsal root ganglion, ninth thoracic dorsal root ganglion, seventh thoracic dorsal root ganglion, tenth thoracic dorsal root ganglion and twelfth thoracic dorsal root ganglion.
eighth thoracic dorsal root ganglion eleventh thoracic dorsal root ganglion ninth thoracic dorsal root ganglion seventh thoracic dorsal root ganglion tenth thoracic dorsal root ganglion twelfth thoracic dorsal root ganglion (with-axons-in Posterior root of eighth thoracic nerve Posterior root of eleventh thoracic nerve Posterior root of ninth thoracic nerve Posterior root of seventh thoracic nerve Posterior root of tenth thoracic nerve Posterior root of twelfth thoracic nerve) (with-axon-presynaptic-element-in dorsal grey horn of T10 dorsal grey horn of T11 dorsal grey horn of T12 dorsal grey horn of T7 dorsal grey horn of T8 dorsal grey horn of T9) (implies Homo sapiens sensory neuron)
from eighth thoracic dorsal root ganglion or eleventh thoracic dorsal root ganglion or ninth thoracic dorsal root ganglion or seventh thoracic dorsal root ganglion or tenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to dorsal grey horn of T10 or dorsal grey horn of T11 or dorsal grey horn of T12 or dorsal grey horn of T7 or dorsal grey horn of T8 or dorsal grey horn of T9 via Posterior root of eighth thoracic nerve, Posterior root of eleventh thoracic nerve, Posterior root of ninth thoracic nerve, Posterior root of seventh thoracic nerve, Posterior root of tenth thoracic nerve, Posterior root of twelfth thoracic nerve from eighth thoracic dorsal root ganglion or eleventh thoracic dorsal root ganglion or ninth thoracic dorsal root ganglion or seventh thoracic dorsal root ganglion or tenth thoracic dorsal root ganglion or twelfth thoracic dorsal root ganglion to bile duct or portal triad or portal vein via thoracic splanchnic nerve
updated to include thoracic splanchnic nerve as axon leading to sensory terminal
inferior vagus X ganglion with axon sensory terminal in hilus of the liver OR bile duct via anterior abdominal vagal trunk with axon terminal in nucleus of the tractus solitarius via vagus nerve
Cross-species inference: Even if these sensory connections come mostly from rat studies sensory endings are present also in humans. The laterality that we represent in rat has not been investigated in humans to our knowledge.
In human, the connection goes from inferior vagus X ganglion to bile duct or hilar portion of hepatic duct via anterior abdominal vagal trunk; from inferior vagus X ganglion to nucleus of solitary tract via vagus nerve. This sensory connection projects from the inferior vagus X ganglion.
inferior vagus X ganglion (with-axon-in 10n) (with-axon-presynaptic-element-in nucleus of solitary tract) (implies Homo sapiens sensory neuron)
from inferior vagus X ganglion to bile duct or hilar portion of hepatic duct via anterior abdominal vagal trunk from inferior vagus X ganglion to nucleus of solitary tract via vagus nerve
updated to include abdominal vagal trunk as axon leading to sensory terminal.
intermediolateral cell column of T7-T12 spinal cord to celiac-superior mesenteric ganglia OR aorticorenal ganglion via thoracic splanchnic nerves
Cross-species inference: The information mentioned in several of the sources on the origin of preganglionic spinal sympathetic fibers seem to be coming from Magni et al., (1983) https://doi.org/10.1016/0165-1838(83)90108-X were they showed that afferent fibers in rats come from T7-T12. The spinal levels are the same in humans. Considering the pre-ganglionic and post-ganglionic fibers meet in the celiac ganglia it has been shown that the spinal fibers that reach there are T5-T12 with an epicenter mostly T7-T12 [Strack (1988) http://dx.doi.org/10.1016/0006-8993(88)90132-1].
In mouse, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of eleventh thoracic segment or Intermediolateral nucleus of ninth thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of tenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to aorticorenal ganglion or celiac ganglion- superior mesenteric ganglion complex via thoracic splanchnic nerve. This connection projects from the Intermediolateral nucleus of eighth thoracic segment, Intermediolateral nucleus of eleventh thoracic segment, Intermediolateral nucleus of ninth thoracic segment, Intermediolateral nucleus of seventh thoracic segment, Intermediolateral nucleus of tenth thoracic segment and Intermediolateral nucleus of twelfth thoracic segment.
Intermediolateral nucleus of eighth thoracic segment Intermediolateral nucleus of eleventh thoracic segment Intermediolateral nucleus of ninth thoracic segment Intermediolateral nucleus of seventh thoracic segment Intermediolateral nucleus of tenth thoracic segment Intermediolateral nucleus of twelfth thoracic segment (with-axon-in thoracic splanchnic nerve) (with-axon-presynaptic-element-in CSMG aorticorenal ganglion) (projecting-onto neuron type liver 131 neuron type liver 132) neuron (implies Mus musculus Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of eleventh thoracic segment or Intermediolateral nucleus of ninth thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of tenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to aorticorenal ganglion or celiac ganglion- superior mesenteric ganglion complex via thoracic splanchnic nerve
celiac-superior mesenteric ganglia OR aorticorenal ganglion to smooth muscle OR endothelial cell of common hepatic artery via periarterial neural plexus of the common hepatic artery via anterior hepatic plexus
In mouse, the sympathetic post-ganglionic connection goes from aorticorenal ganglion or celiac ganglion- superior mesenteric ganglion complex to common hepatic artery or smooth muscle of hepatic artery via periarterial neural plexus of the common hepatic artery via anterior hepatic neural plexus. This connection projects from the celiac ganglion- superior mesenteric ganglion complex and aorticorenal ganglion.
10/30/25 [ST]: Removing CL cells from forward connections. this modeling will need to be revisited once we determine the proper axiom for it. 10/15/2025 [ST]: With Fahim, we are adding forward connections for cell types as an "additional detail" for cell types that are forward connections (not neurons populations that are forward connections).
CSMG aorticorenal ganglion (with-axons-in anterior hepatic neural plexus periarterial neural plexus of the common hepatic artery) (with-axon-presynaptic-element-in common hepatic artery smooth muscle of hepatic artery) neuron (implies Mus musculus Sympathetic Post-Ganglionic)
from aorticorenal ganglion or celiac ganglion- superior mesenteric ganglion complex to common hepatic artery or smooth muscle of hepatic artery via periarterial neural plexus of the common hepatic artery via anterior hepatic neural plexus
This population has been updated with a new relationship, Cell Type Forward Connection, that references the cell type endothelial cell of common hepatic artery (see ilias' note as referenced as 131-1). Since we are just adding this as a forward connection for this current population (not creating a separate Composer population for the cell type), it's not actually population 131-1)\nWe have included a cell as a forward connection. How do we deal with that here? the forward connection is NPO-IZ-131-1 in liver sheet (https://docs.google.com/spreadsheets/d/1gKL3ktSGyFqPewNbPF_sIHh7R67JV799gHe6E2TVrwE/edit?gid=0#gid=0)\nthis include a cell as a forward connection. not supported.
celiac-superior mesenteric ganglia OR aorticorenal ganglion to smooth muscle OR endothelial cell of hepatic portal vein OR epithelial cell of bile duct via posterior hepatic plexus
In mouse, the sympathetic post-ganglionic connection goes from aorticorenal ganglion or celiac ganglion- superior mesenteric ganglion complex to bile duct epithelium or hepatic portal vein or smooth muscle of portal vein via posterior hepatic neural plexus. This connection projects from the celiac ganglion- superior mesenteric ganglion complex and aorticorenal ganglion.
10/30/2025 [ST]: These CL types, (endothelial cell of hepatic artery and cholangiocyte), have been removed as forward connections per decision made in KM meeting 10/30/25 Updated the population to add forward connections for the 2 cell types (endothelial cell of hepatic artery and cholangiocyte) Because we wanted these to export as their own rows, i created 2 separate relationships with the same predicates. This is just so the export looks the way we want.
CSMG aorticorenal ganglion (with-axon-in posterior hepatic neural plexus) (with-axon-presynaptic-element-in bile duct epithelium hepatic portal vein smooth muscle of portal vein) neuron (implies Mus musculus Sympathetic Post-Ganglionic)
from aorticorenal ganglion or celiac ganglion- superior mesenteric ganglion complex to bile duct epithelium or hepatic portal vein or smooth muscle of portal vein via posterior hepatic neural plexus
10/30/2025 [ST]: These CL types, (endothelial cell of hepatic artery and cholangiocyte), have been removed as forward connections per decision made in KM meeting 10/30/25. need to revisit for how to model them in the future.\nUpdated the population to add forward connections for the 2 cell types (endothelial cell of hepatic artery and cholangiocyte) Because we wanted these to export as their own rows, i created 2 separate relationships with the same predicates. This is just so the export looks the way we want. If this is going to be the process going forward, we will want to make this whole operation easier- because this is a total PITA right now.\nAdded the alert note\nThis has CELLS as forward connections. need to revisit!
Tuberomammillary nucleus, ventral part (mba)
Primary somatosensory area, mouth, layer 6b (mba)
Primary somatosensory area mouth layer 6b
Primary somatosensory area, mouth, layer 6b
Principal sensory nucleus of the trigeminal (mba)
Principal sensory nucleus of the trigeminal
Primary somatosensory area, trunk, layer 6a (mba)
Primary somatosensory area trunk layer 6a
Primary somatosensory area, trunk, layer 6a
Superior colliculus, motor related, intermediate gray layer (mba)
Superior colliculus motor related intermediate gray layer
Superior colliculus, motor related, intermediate gray layer
Superior colliculus, motor related (mba)
internal medullary lamina of the thalamus (mba)
internal medullary lamina of the thalamus
Midline group of the dorsal thalamus (mba)
Superior colliculus, motor related, intermediate white layer (mba)
Superior colliculus motor related intermediate white layer
Superior colliculus, motor related, intermediate white layer
Entorhinal area, lateral part, layer 2 (mba)
Posterior parietal association areas (mba)
Superior colliculus, motor related, deep gray layer (mba)
Superior colliculus motor related deep gray layer
Superior colliculus, motor related, deep gray layer
Intergeniculate leaflet of the lateral geniculate complex (mba)
Intergeniculate leaflet of the lateral geniculate complex
Geniculate group, ventral thalamus (mba)
Entorhinal area, lateral part, layer 6a (mba)
Periventricular hypothalamic nucleus, anterior part (mba)
Periventricular hypothalamic nucleus anterior part
Periventricular hypothalamic nucleus, anterior part
Paraventricular hypothalamic nucleus (mba)
Anterior cingulate area, dorsal part (mba)
posteromedial visual area, layer 2/3 (mba)
Superior colliculus, motor related, deep white layer (mba)
Superior colliculus motor related deep white layer
Superior colliculus, motor related, deep white layer
Spinal nucleus of the trigeminal, oral part, rostral dorsomedial part (mba)
Spinal nucleus of the trigeminal oral part rostral dorsomedial part
Spinal nucleus of the trigeminal, oral part, rostral dorsomedial part
Spinal nucleus of the trigeminal, oral part (mba)
Spinal nucleus of the trigeminal oral part
Spinal nucleus of the trigeminal, oral part
Paraventricular hypothalamic nucleus, magnocellular division, anterior magnocellular part (mba)
Paraventricular hypothalamic nucleus magnocellular division anterior magnocellular part
Paraventricular hypothalamic nucleus, magnocellular division, anterior magnocellular part
Paraventricular hypothalamic nucleus, magnocellular division (mba)
Paraventricular hypothalamic nucleus magnocellular division
Paraventricular hypothalamic nucleus, magnocellular division
Anterior cingulate area, ventral part (mba)
Intralaminar nuclei of the dorsal thalamus (mba)
Intralaminar nuclei of the dorsal thalamus
Thalamus, polymodal association cortex related (mba)
Thalamus polymodal association cortex related
Thalamus, polymodal association cortex related
Entorhinal area, lateral part, layer 3 (mba)
Spinal nucleus of the trigeminal, oral part, middle dorsomedial part, dorsal zone (mba)
Spinal nucleus of the trigeminal oral part middle dorsomedial part dorsal zone
Spinal nucleus of the trigeminal, oral part, middle dorsomedial part, dorsal zone
Paraventricular hypothalamic nucleus, parvicellular division, anterior parvicellular part (mba)
Paraventricular hypothalamic nucleus parvicellular division anterior parvicellular part
Paraventricular hypothalamic nucleus, parvicellular division, anterior parvicellular part
Paraventricular hypothalamic nucleus, parvicellular division (mba)
Paraventricular hypothalamic nucleus parvicellular division
Paraventricular hypothalamic nucleus, parvicellular division
Medial terminal nucleus of the accessory optic tract (mba)
Medial terminal nucleus of the accessory optic tract
Intermediodorsal nucleus of the thalamus (mba)
Intermediodorsal nucleus of the thalamus
Medial group of the dorsal thalamus (mba)
Entorhinal area, lateral part, layer 6b (mba)
Spinal nucleus of the trigeminal, oral part, middle dorsomedial part, ventral zone (mba)
Spinal nucleus of the trigeminal oral part middle dorsomedial part ventral zone
Spinal nucleus of the trigeminal, oral part, middle dorsomedial part, ventral zone
Paraventricular hypothalamic nucleus, descending division (mba)
Paraventricular hypothalamic nucleus descending division
Paraventricular hypothalamic nucleus, descending division
Anterior group of the dorsal thalamus (mba)
Lateral terminal nucleus of the accessory optic tract (mba)
Lateral terminal nucleus of the accessory optic tract
Spinal nucleus of the trigeminal, oral part, ventrolateral part (mba)
Spinal nucleus of the trigeminal oral part ventrolateral part
Spinal nucleus of the trigeminal, oral part, ventrolateral part
Dorsal terminal nucleus of the accessory optic tract (mba)
Dorsal terminal nucleus of the accessory optic tract
Interstitial nucleus of the vestibular nerve (mba)
Interstitial nucleus of the vestibular nerve
Spinal nucleus of the trigeminal, oral part, caudal dorsomedial part (mba)
Spinal nucleus of the trigeminal oral part caudal dorsomedial part
Spinal nucleus of the trigeminal, oral part, caudal dorsomedial part
Paraventricular hypothalamic nucleus, magnocellular division, medial magnocellular part (mba)
Paraventricular hypothalamic nucleus magnocellular division medial magnocellular part
Paraventricular hypothalamic nucleus, magnocellular division, medial magnocellular part
Nucleus of the lateral lemniscus, dorsal part (mba)
Nucleus of the lateral lemniscus dorsal part
Nucleus of the lateral lemniscus, dorsal part
superior cerebellar peduncle decussation (mba)
superior cerebellar peduncle decussation
Paraventricular hypothalamic nucleus, parvicellular division, medial parvicellular part, dorsal zone (mba)
Paraventricular hypothalamic nucleus parvicellular division medial parvicellular part dorsal zone
Paraventricular hypothalamic nucleus, parvicellular division, medial parvicellular part, dorsal zone
Nucleus of the lateral lemniscus, horizontal part (mba)
Nucleus of the lateral lemniscus horizontal part
Nucleus of the lateral lemniscus, horizontal part
Entorhinal area, lateral part, layer 4 (mba)
motor root of the trigeminal nerve (mba)
Temporal association areas, layer 1 (mba)
Nucleus of the lateral lemniscus, ventral part (mba)
Nucleus of the lateral lemniscus ventral part
Nucleus of the lateral lemniscus, ventral part
nucleus lemnisci lateralis pars ventralis
ventral nucleus of the lateral lemniscus
Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part (mba)
Paraventricular hypothalamic nucleus magnocellular division posterior magnocellular part
Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part
Agranular insular area, dorsal part (mba)
Superior olivary complex, medial part (mba)
nucleus salivatorius inferior nervi glossopharyngei
Paraventricular hypothalamic nucleus, parvicellular division, periventricular part (mba)
Paraventricular hypothalamic nucleus parvicellular division periventricular part
Paraventricular hypothalamic nucleus, parvicellular division, periventricular part
Agranular insular area, posterior part (mba)
Granular lamina of the cochlear nuclei (mba)
Primary somatosensory area, lower limb, layer 2/3 (mba)
Primary somatosensory area lower limb layer 2/3
Primary somatosensory area, lower limb, layer 2/3
Primary somatosensory area, lower limb (mba)
Superior olivary complex, lateral part (mba)
inferior olivary complex dorsalaccessory nucleus
Periventricular hypothalamic nucleus, intermediate part (mba)
Periventricular hypothalamic nucleus intermediate part
Periventricular hypothalamic nucleus, intermediate part
Agranular insular area, ventral part (mba)
Agranular insular area, posterior part, layer 1 (mba)
Agranular insular area posterior part layer 1
Agranular insular area, posterior part, layer 1
Superior olivary complex, periolivary region (mba)
Superior olivary complex periolivary region
Superior olivary complex, periolivary region
Periventricular hypothalamic nucleus, posterior part (mba)
Periventricular hypothalamic nucleus posterior part
Periventricular hypothalamic nucleus, posterior part
Superior central nucleus raphe, medial part (mba)
Superior central nucleus raphe medial part
Superior central nucleus raphe, medial part
Periventricular hypothalamic nucleus, preoptic part (mba)
Periventricular hypothalamic nucleus preoptic part
Periventricular hypothalamic nucleus, preoptic part
Superior central nucleus raphe, lateral part (mba)
Superior central nucleus raphe lateral part
Superior central nucleus raphe, lateral part
Lateral group of the dorsal thalamus (mba)
lateral nuclear group of dorsal thalamus
Entorhinal area, lateral part, layer 5 (mba)
Nucleus ambiguus, ventral division (mba)
Paraventricular nucleus of the thalamus (mba)
periventricular bundle of the hypothalamus (mba)
periventricular bundle of the hypothalamus
Lateral dorsal nucleus of thalamus (mba)
periventricular zone of the hypothalamus
Anterior olfactory nucleus, layer 1 (mba)
Agranular insular area, posterior part, layer 2/3 (mba)
Agranular insular area posterior part layer 2/3
Agranular insular area, posterior part, layer 2/3
central canal, spinal cord/medulla (mba)
Midbrain, behavioral state related (mba)
Anterior olfactory nucleus, dorsal part (mba)
Anterior olfactory nucleus, layer 2 (mba)
Dorsal part of the lateral geniculate complex (mba)
Dorsal part of the lateral geniculate complex
Anterior olfactory nucleus, external part (mba)
Anterior olfactory nucleus external part
Anterior olfactory nucleus, external part
Ventral part of the lateral geniculate complex (mba)
Ventral part of the lateral geniculate complex
Anterior olfactory nucleus, lateral part (mba)
Anterior olfactory nucleus, lateral part
Accessory olfactory bulb, glomerular layer (mba)
Accessory olfactory bulb glomerular layer
Accessory olfactory bulb, glomerular layer
glomerular layer of the accessory olfactory bulb
Anterior olfactory nucleus, medial part (mba)
Cortical amygdalar area, anterior part, layer 1 (mba)
Cortical amygdalar area anterior part layer 1
Cortical amygdalar area, anterior part, layer 1
Cortical amygdalar area, anterior part (mba)
Parapyramidal nucleus, superficial part (mba)
Accessory olfactory bulb, granular layer (mba)
Accessory olfactory bulb, granular layer
accessory olfactory bulb granule cell layer
Anterior olfactory nucleus, posteroventral part (mba)
Anterior olfactory nucleus posteroventral part
Anterior olfactory nucleus, posteroventral part
Cortical amygdalar area, anterior part, layer 2 (mba)
Cortical amygdalar area anterior part layer 2
Cortical amygdalar area, anterior part, layer 2
Primary somatosensory area, barrel field, layer 2/3 (mba)
Primary somatosensory area barrel field layer 2/3
Primary somatosensory area, barrel field, layer 2/3
Primary somatosensory area, barrel field (mba)
Primary somatosensory area, barrel field
Accessory olfactory bulb, mitral layer (mba)
accessory olfactory bulb mitral cell layer
retriculospinal tract, lateral part (mba)
Cortical amygdalar area, anterior part, layer 3 (mba)
Cortical amygdalar area anterior part layer 3
Cortical amygdalar area, anterior part, layer 3
Anterior cingulate area, dorsal part, layer 2/3 (mba)
Anterior cingulate area dorsal part layer 2/3
Anterior cingulate area, dorsal part, layer 2/3
Main olfactory bulb, glomerular layer (mba)
retriculospinal tract, medial part (mba)
Cortical amygdalar area, posterior part, lateral zone, layer 1 (mba)
Cortical amygdalar area posterior part lateral zone layer 1
Cortical amygdalar area, posterior part, lateral zone, layer 1
Cortical amygdalar area, posterior part, lateral zone (mba)
Cortical amygdalar area posterior part lateral zone
Cortical amygdalar area, posterior part, lateral zone
Lateral posterior nucleus of the thalamus (mba)
Lateral posterior nucleus of the thalamus
Main olfactory bulb, granule layer (mba)
Cortical amygdalar area, posterior part, lateral zone, layer 2 (mba)
Cortical amygdalar area posterior part lateral zone layer 2
Cortical amygdalar area, posterior part, lateral zone, layer 2
Main olfactory bulb, inner plexiform layer (mba)
Main olfactory bulb inner plexiform layer
Main olfactory bulb, inner plexiform layer
sensory root of the trigeminal nerve (mba)
Cortical amygdalar area, posterior part, lateral zone, layer 3 (mba)
Cortical amygdalar area posterior part lateral zone layer 3
Cortical amygdalar area, posterior part, lateral zone, layer 3
Anterolateral visual area, layer 5 (mba)
Temporal association areas, layer 4 (mba)
Cortical amygdalar area, posterior part, medial zone, layer 1 (mba)
Cortical amygdalar area posterior part medial zone layer 1
Cortical amygdalar area, posterior part, medial zone, layer 1
Cortical amygdalar area, posterior part, medial zone (mba)
Cortical amygdalar area posterior part medial zone
Cortical amygdalar area, posterior part, medial zone
Posterior parietal association areas, layer 2/3 (mba)
Posterior parietal association areas layer 2/3
Posterior parietal association areas, layer 2/3
Main olfactory bulb, outer plexiform layer (mba)
Main olfactory bulb outer plexiform layer
Main olfactory bulb, outer plexiform layer
Midbrain reticular nucleus, retrorubral area (mba)
Midbrain reticular nucleus retrorubral area
Midbrain reticular nucleus, retrorubral area
Cortical amygdalar area, posterior part, medial zone, layer 2 (mba)
Cortical amygdalar area posterior part medial zone layer 2
Cortical amygdalar area, posterior part, medial zone, layer 2
Lateral septal nucleus, caudal (caudodorsal) part (mba)
Lateral septal nucleus caudal (caudodorsal) part
Lateral septal nucleus, caudal (caudodorsal) part
Cortical amygdalar area, posterior part, medial zone, layer 3 (mba)
Cortical amygdalar area posterior part medial zone layer 3
Cortical amygdalar area, posterior part, medial zone, layer 3
posteromedial visual area, layer 6a (mba)
Lateral septal nucleus, rostral (rostroventral) part (mba)
Lateral septal nucleus rostral (rostroventral) part
Lateral septal nucleus, rostral (rostroventral) part
Entorhinal area, medial part, ventral zone, layer 1 (mba)
Entorhinal area medial part ventral zone layer 1
Entorhinal area, medial part, ventral zone, layer 1
Entorhinal area, medial part, ventral zone (mba)
Entorhinal area medial part ventral zone
Entorhinal area, medial part, ventral zone
Nucleus of the lateral olfactory tract, molecular layer (mba)
Nucleus of the lateral olfactory tract molecular layer
Nucleus of the lateral olfactory tract, molecular layer
Nucleus of the lateral olfactory tract (mba)
Lateral septal nucleus, ventral part (mba)
Nucleus of the lateral olfactory tract, pyramidal layer (mba)
Nucleus of the lateral olfactory tract pyramidal layer
Nucleus of the lateral olfactory tract, pyramidal layer
Posterolateral visual area, layer 2/3 (mba)
Anteroventral periventricular nucleus (mba)
Retrosplenial area, dorsal part, layer 6a (mba)
Retrosplenial area, dorsal part, layer 6a
Retrosplenial area, lateral agranular part, layer 6b (mba)
Retrosplenial area lateral agranular part layer 6b
Retrosplenial area, lateral agranular part, layer 6b
Retrosplenial area, lateral agranular part (mba)
Retrosplenial area lateral agranular part
Retrosplenial area, lateral agranular part
Bed nucleus of the anterior commissure (mba)
Orbital area, ventrolateral part, layer 2/3 (mba)
Orbital area ventrolateral part layer 2/3
Orbital area, ventrolateral part, layer 2/3
Temporal association areas, layer 5 (mba)
Bed nucleus of the accessory olfactory tract (mba)
Bed nucleus of the accessory olfactory tract
Anterior cingulate area, ventral part, layer 2/3 (mba)
Anterior cingulate area ventral part layer 2/3
Anterior cingulate area, ventral part, layer 2/3
Taenia tecta, dorsal part, layers 1-4 (mba)
Ventral part of the lateral geniculate complex, lateral zone (mba)
Ventral part of the lateral geniculate complex lateral zone
Ventral part of the lateral geniculate complex, lateral zone
Superior colliculus, sensory related (mba)
Basolateral amygdalar nucleus, anterior part (mba)
Basolateral amygdalar nucleus anterior part
Basolateral amygdalar nucleus, anterior part
Taenia tecta, ventral part, layers 1-3 (mba)
Posterior parietal association areas, layer 6a (mba)
Posterior parietal association areas layer 6a
Posterior parietal association areas, layer 6a
Basolateral amygdalar nucleus, posterior part (mba)
Basolateral amygdalar nucleus posterior part
Basolateral amygdalar nucleus, posterior part
Entorhinal area, lateral part, layer 4/5 (mba)
Entorhinal area, lateral part, layer 4/5
Agranular insular area, posterior part, layer 6a (mba)
Agranular insular area posterior part layer 6a
Agranular insular area, posterior part, layer 6a
Ventral part of the lateral geniculate complex, medial zone (mba)
Ventral part of the lateral geniculate complex medial zone
Ventral part of the lateral geniculate complex, medial zone
primary somatosensory cortex (area S1, areas 3,1,2)
Entorhinal area, medial part, ventral zone, layer 2 (mba)
Entorhinal area medial part ventral zone layer 2
Entorhinal area, medial part, ventral zone, layer 2
Basomedial amygdalar nucleus, anterior part (mba)
Basomedial amygdalar nucleus anterior part
Basomedial amygdalar nucleus, anterior part
Agranular insular area, dorsal part, layer 2/3 (mba)
Agranular insular area dorsal part layer 2/3
Agranular insular area, dorsal part, layer 2/3
Retrosplenial area, dorsal part, layer 6b (mba)
Retrosplenial area, dorsal part, layer 6b
Basomedial amygdalar nucleus, posterior part (mba)
Basomedial amygdalar nucleus posterior part
Basomedial amygdalar nucleus, posterior part
Posterior parietal association areas, layer 6b (mba)
Posterior parietal association areas layer 6b
Posterior parietal association areas, layer 6b
Agranular insular area, posterior part, layer 5 (mba)
Agranular insular area posterior part layer 5
Agranular insular area, posterior part, layer 5
Primary somatosensory area, layer 2/3 (mba)
Bed nuclei of the stria terminalis (mba)
Agranular insular area, posterior part, layer 6b (mba)
Agranular insular area posterior part layer 6b
Agranular insular area, posterior part, layer 6b
Bed nuclei of the stria terminalis, anterior division (mba)
Bed nuclei of the stria terminalis anterior division
Bed nuclei of the stria terminalis, anterior division
anterior division of bed nuclei of stria terminalis
anterior part of the bed nucleus of the stria terminalis
bed nuclei of the stria terminals anterior division
bed nucleus of the stria terminalis anterior division
bed nucleus of the stria terminalis anterior part
bed nucleus of thestria terminalis anterior division
Bed nuclei of the stria terminalis, posterior division (mba)
Bed nuclei of the stria terminalis posterior division
Bed nuclei of the stria terminalis, posterior division
Primary somatosensory area, upper limb (mba)
Entorhinal area, medial part, ventral zone, layer 3 (mba)
Entorhinal area medial part ventral zone layer 3
Entorhinal area, medial part, ventral zone, layer 3
Cortical amygdalar area, posterior part, lateral zone, layers 1-3 (mba)
Cortical amygdalar area posterior part lateral zone layers 1-3
Cortical amygdalar area, posterior part, lateral zone, layers 1-3
Posterolateral visual area, layer 6a (mba)
Cortical amygdalar area, posterior part, medial zone, layers 1-3 (mba)
Cortical amygdalar area posterior part medial zone layers 1-3
Cortical amygdalar area, posterior part, medial zone, layers 1-3
Entorhinal area, lateral part, layer 5/6 (mba)
Entorhinal area, lateral part, layer 5/6
Field CA1, stratum lacunosum-moleculare (mba)
Nucleus of the lateral olfactory tract, layers 1-3 (mba)
Nucleus of the lateral olfactory tract layers 1-3
Nucleus of the lateral olfactory tract, layers 1-3
Posterolateral visual area, layer 6b (mba)
superior olivary nucleus (Barr & Kiernan)
Piriform-amygdalar area, layers 1-3 (mba)
Thalamus, sensory-motor cortex related (mba)
CA1 part of stratum pyramidale hippocampi
Piriform-amygdalar area, molecular layer (mba)
Piriform-amygdalar area, molecular layer
Medial amygdalar nucleus, anterodorsal part (mba)
Medial amygdalar nucleus anterodorsal part
Medial amygdalar nucleus, anterodorsal part
Orbital area, lateral part, layer 2/3 (mba)
Subparafascicular nucleus, magnocellular part (mba)
Subparafascicular nucleus magnocellular part
Subparafascicular nucleus, magnocellular part
Piriform-amygdalar area, pyramidal layer (mba)
Piriform-amygdalar area, pyramidal layer
Medial amygdalar nucleus, anteroventral part (mba)
Medial amygdalar nucleus anteroventral part
Medial amygdalar nucleus, anteroventral part
Entorhinal area, medial part, ventral zone, layer 4 (mba)
Entorhinal area medial part ventral zone layer 4
Entorhinal area, medial part, ventral zone, layer 4
precommissural fornix diagonal band (mba)
Subparafascicular nucleus, parvicellular part (mba)
Subparafascicular nucleus parvicellular part
Subparafascicular nucleus, parvicellular part
Piriform-amygdalar area, polymorph layer (mba)
Piriform-amygdalar area, polymorph layer
Medial amygdalar nucleus, posterodorsal part (mba)
Medial amygdalar nucleus posterodorsal part
Medial amygdalar nucleus, posterodorsal part
Spinal nucleus of the trigeminal, caudal part (mba)
Spinal nucleus of the trigeminal caudal part
Spinal nucleus of the trigeminal, caudal part
Retrosplenial area, ventral part, layer 2/3 (mba)
Retrosplenial area ventral part layer 2/3
Retrosplenial area, ventral part, layer 2/3
Field CA2, stratum lacunosum-moleculare (mba)
Retrosplenial area, dorsal part, layer 2/3 (mba)
Retrosplenial area dorsal part layer 2/3
Retrosplenial area, dorsal part, layer 2/3
Medial amygdalar nucleus, posteroventral part (mba)
Medial amygdalar nucleus posteroventral part
Medial amygdalar nucleus, posteroventral part
Spinal nucleus of the trigeminal, interpolar part (mba)
Spinal nucleus of the trigeminal interpolar part
Spinal nucleus of the trigeminal, interpolar part
Paraventricular hypothalamic nucleus, descending division, dorsal parvicellular part (mba)
Paraventricular hypothalamic nucleus descending division dorsal parvicellular part
Paraventricular hypothalamic nucleus, descending division, dorsal parvicellular part
Orbital area, lateral part, layer 6a (mba)
Anteromedial visual area, layer 6b (mba)
Retrosplenial area, dorsal part, layer 1 (mba)
Retrosplenial area, dorsal part, layer 1
CA2 part of stratum pyramidale hippocampi
Paraventricular hypothalamic nucleus, descending division, forniceal part (mba)
Paraventricular hypothalamic nucleus descending division forniceal part
Paraventricular hypothalamic nucleus, descending division, forniceal part
Orbital area, lateral part, layer 1 (mba)
Primary somatosensory area, upper limb, layer 1 (mba)
Primary somatosensory area upper limb layer 1
Primary somatosensory area, upper limb, layer 1
Basolateral amygdalar nucleus, ventral part (mba)
Basolateral amygdalar nucleus ventral part
Basolateral amygdalar nucleus, ventral part
Paraventricular hypothalamic nucleus, descending division, lateral parvicellular part (mba)
Paraventricular hypothalamic nucleus descending division lateral parvicellular part
Paraventricular hypothalamic nucleus, descending division, lateral parvicellular part
Olfactory tubercle, molecular layer (mba)
Primary somatosensory area, trunk, layer 6b (mba)
Primary somatosensory area trunk layer 6b
Primary somatosensory area, trunk, layer 6b
Paraventricular hypothalamic nucleus, descending division, medial parvicellular part, ventral zone (mba)
Paraventricular hypothalamic nucleus descending division medial parvicellular part ventral zone
Paraventricular hypothalamic nucleus, descending division, medial parvicellular part, ventral zone
Olfactory tubercle, pyramidal layer (mba)
hypothalamic medial zone behavioral control column
Entorhinal area, medial part, dorsal zone, layer 2a (mba)
Entorhinal area medial part dorsal zone layer 2a
Entorhinal area, medial part, dorsal zone, layer 2a
Entorhinal area, medial part, dorsal zone (mba)
Entorhinal area, medial part, dorsal zone
posteromedial visual area, layer 6b (mba)
Field CA3, stratum lacunosum-moleculare (mba)
Medial amygdalar nucleus, posterodorsal part, sublayer a (mba)
Medial amygdalar nucleus posterodorsal part sublayer a
Medial amygdalar nucleus, posterodorsal part, sublayer a
Olfactory tubercle, polymorph layer (mba)
medial geniculate complex of dorsal thalamus
Primary somatosensory area, lower limb, layer 6a (mba)
Primary somatosensory area lower limb layer 6a
Primary somatosensory area, lower limb, layer 6a
Medial amygdalar nucleus, posterodorsal part, sublayer b (mba)
Medial amygdalar nucleus posterodorsal part sublayer b
Medial amygdalar nucleus, posterodorsal part, sublayer b
brachium of the inferior colliculus (mba)
Orbital area, medial part, layer 1 (mba)
Medial amygdalar nucleus, posterodorsal part, sublayer c (mba)
Medial amygdalar nucleus posterodorsal part sublayer c
Medial amygdalar nucleus, posterodorsal part, sublayer c
Orbital area, lateral part, layer 6b (mba)
Superior colliculus, motor related, intermediate gray layer, sublayer a (mba)
Superior colliculus motor related intermediate gray layer sublayer a
Superior colliculus, motor related, intermediate gray layer, sublayer a
CA3 part of stratum pyramidale hippocampi
Bed nuclei of the stria terminalis, anterior division, anteromedial area (mba)
Bed nuclei of the stria terminalis anterior division anteromedial area
Bed nuclei of the stria terminalis, anterior division, anteromedial area
posteromedial visual area, layer 4 (mba)
Superior colliculus, motor related, intermediate gray layer, sublayer b (mba)
Superior colliculus motor related intermediate gray layer sublayer b
Superior colliculus, motor related, intermediate gray layer, sublayer b
Bed nuclei of the stria terminalis, anterior division, dorsomedial nucleus (mba)
Bed nuclei of the stria terminalis anterior division dorsomedial nucleus
Bed nuclei of the stria terminalis, anterior division, dorsomedial nucleus
Entorhinal area, medial part, dorsal zone, layer 2b (mba)
Entorhinal area medial part dorsal zone layer 2b
Entorhinal area, medial part, dorsal zone, layer 2b
Primary somatosensory area, lower limb, layer 6b (mba)
Primary somatosensory area lower limb layer 6b
Primary somatosensory area, lower limb, layer 6b
Superior colliculus, motor related, intermediate gray layer, sublayer c (mba)
Superior colliculus motor related intermediate gray layer sublayer c
Superior colliculus, motor related, intermediate gray layer, sublayer c
Bed nuclei of the stria terminalis, anterior division, fusiform nucleus (mba)
Bed nuclei of the stria terminalis anterior division fusiform nucleus
Bed nuclei of the stria terminalis, anterior division, fusiform nucleus
Postpiriform transition area, layers 1-3 (mba)
Postpiriform transition area, layers 1-3
Bed nuclei of the stria terminalis, anterior division, magnocellular nucleus (mba)
Bed nuclei of the stria terminalis anterior division magnocellular nucleus
Bed nuclei of the stria terminalis, anterior division, magnocellular nucleus
dorsal commissure of the spinal cord (mba)
Orbital area, medial part, layer 2 (mba)
Entorhinal area, medial part, dorsal zone, layer 1 (mba)
Entorhinal area medial part dorsal zone layer 1
Entorhinal area, medial part, dorsal zone, layer 1
Bed nuclei of the stria terminalis, anterior division, ventral nucleus (mba)
Bed nuclei of the stria terminalis anterior division ventral nucleus
Bed nuclei of the stria terminalis, anterior division, ventral nucleus
Posterior parietal association areas, layer 1 (mba)
Posterior parietal association areas layer 1
Posterior parietal association areas, layer 1
Bed nuclei of the stria terminalis, anterior division, anterolateral area (mba)
Bed nuclei of the stria terminalis anterior division anterolateral area
Bed nuclei of the stria terminalis, anterior division, anterolateral area
Midbrain reticular nucleus, magnocellular part (mba)
Midbrain reticular nucleus magnocellular part
Midbrain reticular nucleus, magnocellular part
Retrosplenial area, ventral part, layer 1 (mba)
Retrosplenial area, ventral part, layer 1
Entorhinal area, medial part, dorsal zone, layer 2 (mba)
Entorhinal area medial part dorsal zone layer 2
Entorhinal area, medial part, dorsal zone, layer 2
Central amygdalar nucleus, capsular part (mba)
Central amygdalar nucleus, capsular part
Retrosplenial area, dorsal part, layer 4 (mba)
Retrosplenial area, dorsal part, layer 4
Bed nuclei of the stria terminalis, anterior division, juxtacapsular nucleus (mba)
Bed nuclei of the stria terminalis anterior division juxtacapsular nucleus
Bed nuclei of the stria terminalis, anterior division, juxtacapsular nucleus
Midbrain reticular nucleus, magnocellular part, general (mba)
Midbrain reticular nucleus magnocellular part general
Midbrain reticular nucleus, magnocellular part, general
Entorhinal area, medial part, dorsal zone, layer 5/6 (mba)
Entorhinal area medial part dorsal zone layer 5/6
Entorhinal area, medial part, dorsal zone, layer 5/6
Central amygdalar nucleus, lateral part (mba)
Pontine reticular nucleus, ventral part (mba)
Bed nuclei of the stria terminalis, anterior division, oval nucleus (mba)
Bed nuclei of the stria terminalis anterior division oval nucleus
Bed nuclei of the stria terminalis, anterior division, oval nucleus
Midbrain reticular nucleus, parvicellular part (mba)
Midbrain reticular nucleus parvicellular part
Midbrain reticular nucleus, parvicellular part
Primary somatosensory area, nose, layer 1 (mba)
Primary somatosensory area, nose, layer 1
Central amygdalar nucleus, medial part (mba)
Cochlear nucleus, subpedunclular granular region (mba)
Cochlear nucleus subpedunclular granular region
Cochlear nucleus, subpedunclular granular region
Bed nuclei of the stria terminalis, anterior division, rhomboid nucleus (mba)
Bed nuclei of the stria terminalis anterior division rhomboid nucleus
Bed nuclei of the stria terminalis, anterior division, rhomboid nucleus
posteromedial visual area, layer 5 (mba)
Bed nuclei of the stria terminalis, posterior division, dorsal nucleus (mba)
Bed nuclei of the stria terminalis posterior division dorsal nucleus
Bed nuclei of the stria terminalis, posterior division, dorsal nucleus
Central lateral nucleus of the thalamus (mba)
Primary somatosensory area, upper limb, layer 4 (mba)
Primary somatosensory area upper limb layer 4
Primary somatosensory area, upper limb, layer 4
Bed nuclei of the stria terminalis, posterior division, principal nucleus (mba)
Bed nuclei of the stria terminalis posterior division principal nucleus
Bed nuclei of the stria terminalis, posterior division, principal nucleus
Nucleus of the brachium of the inferior colliculus (mba)
Nucleus of the brachium of the inferior colliculus
Orbital area, medial part, layer 2/3 (mba)
Cortical amygdalar area, posterior part, lateral zone, layers 1-2 (mba)
Cortical amygdalar area posterior part lateral zone layers 1-2
Cortical amygdalar area, posterior part, lateral zone, layers 1-2
Bed nuclei of the stria terminalis, posterior division, interfascicular nucleus (mba)
Bed nuclei of the stria terminalis posterior division interfascicular nucleus
Bed nuclei of the stria terminalis, posterior division, interfascicular nucleus
Anterior cingulate area, ventral part, layer 1 (mba)
Anterior cingulate area ventral part layer 1
Anterior cingulate area, ventral part, layer 1
Retrosplenial area, ventral part, layer 6a (mba)
Retrosplenial area ventral part layer 6a
Retrosplenial area, ventral part, layer 6a
Cortical amygdalar area, posterior part, medial zone, layers 1-2 (mba)
Cortical amygdalar area posterior part medial zone layers 1-2
Cortical amygdalar area, posterior part, medial zone, layers 1-2
Bed nuclei of the stria terminalis, posterior division, transverse nucleus (mba)
Bed nuclei of the stria terminalis posterior division transverse nucleus
Bed nuclei of the stria terminalis, posterior division, transverse nucleus
Central medial nucleus of the thalamus (mba)
Anterolateral visual area, layer 6a (mba)
Bed nuclei of the stria terminalis, posterior division, strial extension (mba)
Bed nuclei of the stria terminalis posterior division strial extension
Bed nuclei of the stria terminalis, posterior division, strial extension
Retrosplenial area, ventral part, layer 2 (mba)
Retrosplenial area, ventral part, layer 2
Orbital area, ventrolateral part, layer 6a (mba)
Orbital area ventrolateral part layer 6a
Orbital area, ventrolateral part, layer 6a
Retrosplenial area, dorsal part, layer 5 (mba)
Retrosplenial area, dorsal part, layer 5
Mediodorsal nucleus of the thalamus, central part (mba)
Mediodorsal nucleus of the thalamus central part
Mediodorsal nucleus of the thalamus, central part
Orbital area, medial part, layer 5 (mba)
Retrosplenial area, ventral part, layer 6b (mba)
Retrosplenial area ventral part layer 6b
Retrosplenial area, ventral part, layer 6b
Primary somatosensory area, upper limb, layer 5 (mba)
Primary somatosensory area upper limb layer 5
Primary somatosensory area, upper limb, layer 5
Mediodorsal nucleus of the thalamus, lateral part (mba)
Mediodorsal nucleus of the thalamus lateral part
Mediodorsal nucleus of the thalamus, lateral part
Ventral anterior-lateral complex of the thalamus (mba)
Ventral anterior-lateral complex of the thalamus
Ventral group of the dorsal thalamus (mba)
Orbital area, lateral part, layer 5 (mba)
Nucleus of the posterior commissure (mba)
Posterior parietal association areas, layer 4 (mba)
Posterior parietal association areas layer 4
Posterior parietal association areas, layer 4
Mediodorsal nucleus of the thalamus, medial part (mba)
Mediodorsal nucleus of the thalamus medial part
Mediodorsal nucleus of the thalamus, medial part
Posterior auditory area, layer 2/3 (mba)
Cortical amygdalar area, posterior part (mba)
Anterolateral visual area, layer 6b (mba)
Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part, lateral zone (mba)
Paraventricular hypothalamic nucleus magnocellular division posterior magnocellular part lateral zone
Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part, lateral zone
Primary somatosensory area, nose, layer 4 (mba)
Primary somatosensory area, nose, layer 4
Primary somatosensory area, mouth, layer 2/3 (mba)
Primary somatosensory area mouth layer 2/3
Primary somatosensory area, mouth, layer 2/3
Nucleus of the solitary tract, central part (mba)
Nucleus of the solitary tract central part
Nucleus of the solitary tract, central part
Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part, medial zone (mba)
Paraventricular hypothalamic nucleus magnocellular division posterior magnocellular part medial zone
Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part, medial zone
Entorhinal area, medial part, dorsal zone, layer 3 (mba)
Entorhinal area medial part dorsal zone layer 3
Entorhinal area, medial part, dorsal zone, layer 3
Nucleus of the solitary tract, commissural part (mba)
Nucleus of the solitary tract commissural part
Nucleus of the solitary tract, commissural part
Dorsomedial nucleus of the hypothalamus, anterior part (mba)
Dorsomedial nucleus of the hypothalamus anterior part
Dorsomedial nucleus of the hypothalamus, anterior part
Dorsomedial nucleus of the hypothalamus (mba)
Primary somatosensory area, trunk, layer 2/3 (mba)
Primary somatosensory area trunk layer 2/3
Primary somatosensory area, trunk, layer 2/3
Retrosplenial area, lateral agranular part, layer 1 (mba)
Retrosplenial area lateral agranular part layer 1
Retrosplenial area, lateral agranular part, layer 1
Nucleus of the solitary tract, gelatinous part (mba)
Nucleus of the solitary tract gelatinous part
Nucleus of the solitary tract, gelatinous part
Agranular insular area, ventral part, layer 6a (mba)
Agranular insular area ventral part layer 6a
Agranular insular area, ventral part, layer 6a
Dorsomedial nucleus of the hypothalamus, posterior part (mba)
Dorsomedial nucleus of the hypothalamus posterior part
Dorsomedial nucleus of the hypothalamus, posterior part
Orbital area, ventrolateral part, layer 6b (mba)
Orbital area ventrolateral part layer 6b
Orbital area, ventrolateral part, layer 6b
Nucleus of the solitary tract, lateral part (mba)
Nucleus of the solitary tract lateral part
Nucleus of the solitary tract, lateral part
Posterior parietal association areas, layer 5 (mba)
Posterior parietal association areas layer 5
Posterior parietal association areas, layer 5
Dorsomedial nucleus of the hypothalamus, ventral part (mba)
Dorsomedial nucleus of the hypothalamus ventral part
Dorsomedial nucleus of the hypothalamus, ventral part
Ventral medial nucleus of the thalamus (mba)
Primary somatosensory area, layer 6a (mba)
Retrosplenial area, ventral part, layer 5 (mba)
Retrosplenial area, ventral part, layer 5
Nucleus of the solitary tract, medial part (mba)
Nucleus of the solitary tract medial part
Nucleus of the solitary tract, medial part
Agranular insular area, ventral part, layer 2/3 (mba)
Agranular insular area ventral part layer 2/3
Agranular insular area, ventral part, layer 2/3
Agranular insular area, ventral part, layer 6b (mba)
Agranular insular area ventral part layer 6b
Agranular insular area, ventral part, layer 6b
Anterior hypothalamic nucleus, anterior part (mba)
Anterior hypothalamic nucleus anterior part
Anterior hypothalamic nucleus, anterior part
Primary somatosensory area, nose, layer 5 (mba)
Primary somatosensory area, nose, layer 5
Agranular insular area, ventral part, layer 1 (mba)
Agranular insular area ventral part layer 1
Agranular insular area, ventral part, layer 1
midbrain tract of the trigeminal nerve (mba)
Anterior hypothalamic nucleus, central part (mba)
Anterior hypothalamic nucleus central part
Anterior hypothalamic nucleus, central part
Ventral posterior complex of the thalamus (mba)
Ventral posterior complex of the thalamus
Entorhinal area, medial part, dorsal zone, layer 4 (mba)
Entorhinal area medial part dorsal zone layer 4
Entorhinal area, medial part, dorsal zone, layer 4
Entorhinal area, lateral part, layer 2a (mba)
Anterior hypothalamic nucleus, dorsal part (mba)
Anterior hypothalamic nucleus dorsal part
Anterior hypothalamic nucleus, dorsal part
Ventral posterolateral nucleus of the thalamus (mba)
Ventral posterolateral nucleus of the thalamus
Primary somatosensory area, layer 6b (mba)
periventricular bundle of the thalamus (mba)
Anterior hypothalamic nucleus, posterior part (mba)
Anterior hypothalamic nucleus posterior part
Anterior hypothalamic nucleus, posterior part
Ventral posterolateral nucleus of the thalamus, parvicellular part (mba)
Ventral posterolateral nucleus of the thalamus parvicellular part
Ventral posterolateral nucleus of the thalamus, parvicellular part
Entorhinal area, medial part, dorsal zone, layer 5 (mba)
Entorhinal area medial part dorsal zone layer 5
Entorhinal area, medial part, dorsal zone, layer 5
Temporal association areas, layer 6a (mba)
Medial mammillary nucleus, median part (mba)
Ventral posteromedial nucleus of the thalamus (mba)
Ventral posteromedial nucleus of the thalamus
Medial preoptic nucleus, central part (mba)
Ventral posteromedial nucleus of the thalamus, parvicellular part (mba)
Ventral posteromedial nucleus of the thalamus parvicellular part
Ventral posteromedial nucleus of the thalamus, parvicellular part
Dentate gyrus crest, molecular layer (mba)
Entorhinal area, medial part, dorsal zone, layer 6 (mba)
Entorhinal area medial part dorsal zone layer 6
Entorhinal area, medial part, dorsal zone, layer 6
Medial preoptic nucleus, lateral part (mba)
Posterolateral visual area, layer 1 (mba)
Dentate gyrus crest, polymorph layer (mba)
Medial preoptic nucleus, medial part (mba)
Dentate gyrus crest, granule cell layer (mba)
Ventromedial hypothalamic nucleus, anterior part (mba)
Ventromedial hypothalamic nucleus anterior part
Ventromedial hypothalamic nucleus, anterior part
propriohypothalamic pathways, dorsal (mba)
Vascular organ of the lamina terminalis (mba)
Entorhinal area, lateral part, layer 2b (mba)
Ventromedial hypothalamic nucleus, central part (mba)
Ventromedial hypothalamic nucleus central part
Ventromedial hypothalamic nucleus, central part
propriohypothalamic pathways, lateral (mba)
Anterior cingulate area, ventral part, layer 5 (mba)
Anterior cingulate area ventral part layer 5
Anterior cingulate area, ventral part, layer 5
Retrosplenial area, lateral agranular part, layer 5 (mba)
Retrosplenial area lateral agranular part layer 5
Retrosplenial area, lateral agranular part, layer 5
Dentate gyrus lateral blade, molecular layer (mba)
Dentate gyrus lateral blade molecular layer
Dentate gyrus lateral blade, molecular layer
Ventromedial hypothalamic nucleus, dorsomedial part (mba)
Ventromedial hypothalamic nucleus dorsomedial part
Ventromedial hypothalamic nucleus, dorsomedial part
propriohypothalamic pathways, medial (mba)
Dentate gyrus lateral blade, polymorph layer (mba)
Dentate gyrus lateral blade polymorph layer
Dentate gyrus lateral blade, polymorph layer
Agranular insular area, dorsal part, layer 6a (mba)
Agranular insular area dorsal part layer 6a
Agranular insular area, dorsal part, layer 6a
Ventromedial hypothalamic nucleus, ventrolateral part (mba)
Ventromedial hypothalamic nucleus ventrolateral part
Ventromedial hypothalamic nucleus, ventrolateral part
Temporal association areas, layer 6b (mba)
propriohypothalamic pathways, ventral (mba)
Dentate gyrus lateral blade, granule cell layer (mba)
Dentate gyrus lateral blade granule cell layer
Dentate gyrus lateral blade, granule cell layer
Primary somatosensory area, layer 1 (mba)
spinal tract of the trigeminal nerve (mba)
Agranular insular area, ventral part, layer 5 (mba)
Agranular insular area ventral part layer 5
Agranular insular area, ventral part, layer 5
posteromedial visual area, layer 1 (mba)
Supplemental somatosensory area, layer 2/3 (mba)
Supplemental somatosensory area layer 2/3
Supplemental somatosensory area, layer 2/3
Dentate gyrus medial blade, molecular layer (mba)
Dentate gyrus medial blade molecular layer
Dentate gyrus medial blade, molecular layer
Anterior cingulate area, ventral part, 6a (mba)
Anterior cingulate area, ventral part, 6a
Inferior colliculus, central nucleus (mba)
Dentate gyrus medial blade, polymorph layer (mba)
Dentate gyrus medial blade polymorph layer
Dentate gyrus medial blade, polymorph layer
Anterior cingulate area, ventral part, 6b (mba)
Anterior cingulate area, ventral part, 6b
Inferior colliculus, dorsal nucleus (mba)
Dentate gyrus medial blade, granule cell layer (mba)
Dentate gyrus medial blade granule cell layer
Dentate gyrus medial blade, granule cell layer
Inferior colliculus, external nucleus (mba)
Subiculum, dorsal part, molecular layer (mba)
Agranular insular area, dorsal part, layer 6b (mba)
Agranular insular area dorsal part layer 6b
Agranular insular area, dorsal part, layer 6b
Subiculum, dorsal part, stratum radiatum (mba)
Subiculum, dorsal part, stratum radiatum
Primary somatosensory area, nose, layer 2/3 (mba)
Primary somatosensory area nose layer 2/3
Primary somatosensory area, nose, layer 2/3
Dorsal motor nucleus of the vagus nerve (mba)
Superior colliculus, superficial gray layer (mba)
Superior colliculus superficial gray layer
Superior colliculus, superficial gray layer
Subiculum, dorsal part, pyramidal layer (mba)
Subiculum, ventral part, molecular layer (mba)
Subiculum, ventral part, molecular layer
Primary somatosensory area, upper limb, layer 2/3 (mba)
Primary somatosensory area upper limb layer 2/3
Primary somatosensory area, upper limb, layer 2/3
ventral commissure of the spinal cord (mba)
Parabrachial nucleus, lateral division, central lateral part (mba)
Parabrachial nucleus lateral division central lateral part
Parabrachial nucleus, lateral division, central lateral part
Parabrachial nucleus, lateral division (mba)
Subiculum, ventral part, stratum radiatum (mba)
Subiculum, ventral part, stratum radiatum
Supplemental somatosensory area, layer 6a (mba)
Supplemental somatosensory area layer 6a
Supplemental somatosensory area, layer 6a
Primary somatosensory area, layer 4 (mba)
Parabrachial nucleus, lateral division, dorsal lateral part (mba)
Parabrachial nucleus lateral division dorsal lateral part
Parabrachial nucleus, lateral division, dorsal lateral part
Posterolateral visual area, layer 4 (mba)
Subiculum, ventral part, pyramidal layer (mba)
Subiculum, ventral part, pyramidal layer
Supplemental somatosensory area, layer 1 (mba)
Supplemental somatosensory area, layer 1
Parabrachial nucleus, lateral division, external lateral part (mba)
Parabrachial nucleus lateral division external lateral part
Parabrachial nucleus, lateral division, external lateral part
Primary somatosensory area, mouth, layer 1 (mba)
Primary somatosensory area mouth layer 1
Primary somatosensory area, mouth, layer 1
Parabrachial nucleus, lateral division, superior lateral part (mba)
Parabrachial nucleus lateral division superior lateral part
Parabrachial nucleus, lateral division, superior lateral part
Primary somatosensory area, nose, layer 6a (mba)
Primary somatosensory area nose layer 6a
Primary somatosensory area, nose, layer 6a
Parabrachial nucleus, medial division (mba)
Parabrachial nucleus, lateral division, ventral lateral part (mba)
Parabrachial nucleus lateral division ventral lateral part
Parabrachial nucleus, lateral division, ventral lateral part
Supplemental somatosensory area, layer 6b (mba)
Supplemental somatosensory area layer 6b
Supplemental somatosensory area, layer 6b
Parabrachial nucleus, medial division, external medial part (mba)
Parabrachial nucleus medial division external medial part
Parabrachial nucleus, medial division, external medial part
anterior commissure, olfactory limb (mba)
Posterolateral visual area, layer 5 (mba)
Anterolateral visual area, layer 2/3 (mba)
Retrosplenial area, lateral agranular part, layer 6a (mba)
Retrosplenial area lateral agranular part layer 6a
Retrosplenial area, lateral agranular part, layer 6a
anterior commissure, temporal limb (mba)
Orbital area, medial part, layer 6a (mba)
Parabrachial nucleus, medial division, medial medial part (mba)
Parabrachial nucleus medial division medial medial part
Parabrachial nucleus, medial division, medial medial part
brachium of the superior colliculus (mba)
Anterior cingulate area, dorsal part, layer 6a (mba)
Anterior cingulate area dorsal part layer 6a
Anterior cingulate area, dorsal part, layer 6a
Primary somatosensory area, layer 5 (mba)
Parabrachial nucleus, medial division, ventral medial part (mba)
Parabrachial nucleus medial division ventral medial part
Parabrachial nucleus, medial division, ventral medial part
Anterior cingulate area, dorsal part, layer 6b (mba)
Anterior cingulate area dorsal part layer 6b
Anterior cingulate area, dorsal part, layer 6b
Primary somatosensory area, nose, layer 6b (mba)
Primary somatosensory area nose layer 6b
Primary somatosensory area, nose, layer 6b
Anterior cingulate area, dorsal part, layer 1 (mba)
Anterior cingulate area dorsal part layer 1
Anterior cingulate area, dorsal part, layer 1
Paragigantocellular reticular nucleus (mba)
Primary somatosensory area, upper limb, layer 6a (mba)
Primary somatosensory area upper limb layer 6a
Primary somatosensory area, upper limb, layer 6a
Primary somatosensory area, mouth, layer 4 (mba)
Primary somatosensory area mouth layer 4
Primary somatosensory area, mouth, layer 4
Lateral reticular nucleus, magnocellular part (mba)
Lateral reticular nucleus magnocellular part
Lateral reticular nucleus, magnocellular part
Lateral reticular nucleus, parvicellular part (mba)
Lateral reticular nucleus parvicellular part
Lateral reticular nucleus, parvicellular part
Retrosplenial area, lateral agranular part, layer 2/3 (mba)
Retrosplenial area lateral agranular part layer 2/3
Retrosplenial area, lateral agranular part, layer 2/3
Endopiriform nucleus, ventral part (mba)
Orbital area, ventrolateral part, layer 1 (mba)
Orbital area, ventrolateral part, layer 1
Paragigantocellular reticular nucleus, dorsal part (mba)
Paragigantocellular reticular nucleus dorsal part
Paragigantocellular reticular nucleus, dorsal part
corpus callosum, posterior forceps (mba)
Primary somatosensory area, mouth, layer 5 (mba)
Primary somatosensory area mouth layer 5
Primary somatosensory area, mouth, layer 5
Edinger-Westphal nucleus of oculomotor nerve
nuclei accessorii nervi oculomtorii (Edinger-Westphal)
nucleus nervi oculomotorii Edinger-Westphal
nucleus nervi oculomotorii parvocellularis
Paragigantocellular reticular nucleus, lateral part (mba)
Paragigantocellular reticular nucleus lateral part
Paragigantocellular reticular nucleus, lateral part
Primary somatosensory area, barrel field, layer 1 (mba)
Primary somatosensory area barrel field layer 1
Primary somatosensory area, barrel field, layer 1
Agranular insular area, dorsal part, layer 1 (mba)
Agranular insular area dorsal part layer 1
Agranular insular area, dorsal part, layer 1
Entorhinal area, lateral part, layer 2/3 (mba)
Entorhinal area, lateral part, layer 2/3
Primary somatosensory area, trunk, layer 1 (mba)
Primary somatosensory area trunk layer 1
Primary somatosensory area, trunk, layer 1
geniculate thalamic nuclear group (metathalamus)
Anterior cingulate area, dorsal part, layer 5 (mba)
Anterior cingulate area dorsal part layer 5
Anterior cingulate area, dorsal part, layer 5
olfactory nerve layer of main olfactory bulb (mba)
olfactory nerve layer of main olfactory bulb
Primary somatosensory area, upper limb, layer 6b (mba)
Primary somatosensory area upper limb layer 6b
Primary somatosensory area, upper limb, layer 6b
Posterior limiting nucleus of the thalamus (mba)
Posterior limiting nucleus of the thalamus
Primary somatosensory area, lower limb, layer 1 (mba)
Primary somatosensory area lower limb layer 1
Primary somatosensory area, lower limb, layer 1
medial globus pallidus (entopeduncular nucleus)
Taenia tecta, dorsal part, layer 1 (mba)
Supplemental somatosensory area, layer 4 (mba)
Supplemental somatosensory area, layer 4
Primary somatosensory area, barrel field, layer 6a (mba)
Primary somatosensory area barrel field layer 6a
Primary somatosensory area, barrel field, layer 6a
Taenia tecta, dorsal part, layer 2 (mba)
Anteromedial visual area, layer 6a (mba)
Primary somatosensory area, barrel field, layer 4 (mba)
Primary somatosensory area barrel field layer 4
Primary somatosensory area, barrel field, layer 4
Taenia tecta, dorsal part, layer 3 (mba)
Anterior cingulate area, layer 2/3 (mba)
Taenia tecta, dorsal part, layer 4 (mba)
Primary somatosensory area, barrel field, layer 6b (mba)
Primary somatosensory area barrel field layer 6b
Primary somatosensory area, barrel field, layer 6b
Anteromedial visual area, layer 2/3 (mba)
Taenia tecta, ventral part, layer 1 (mba)
Primary somatosensory area, barrel field, layer 5 (mba)
Primary somatosensory area barrel field layer 5
Primary somatosensory area, barrel field, layer 5
Medial geniculate complex, dorsal part (mba)
Anterolateral visual area, layer 1 (mba)
Taenia tecta, ventral part, layer 2 (mba)
Medial geniculate complex, ventral part (mba)
Taenia tecta, ventral part, layer 3 (mba)
Primary somatosensory area, trunk, layer 4 (mba)
Primary somatosensory area trunk layer 4
Primary somatosensory area, trunk, layer 4
Medial geniculate complex, medial part (mba)
Supplemental somatosensory area, layer 5 (mba)
Supplemental somatosensory area, layer 5
external medullary lamina of the thalamus (mba)
external medullary lamina of the thalamus
Pontine reticular nucleus, caudal part (mba)
Primary somatosensory area, lower limb, layer 4 (mba)
Primary somatosensory area lower limb layer 4
Primary somatosensory area, lower limb, layer 4
Medullary reticular nucleus, dorsal part (mba)
Medullary reticular nucleus, dorsal part
Agranular insular area, dorsal part, layer 5 (mba)
Agranular insular area dorsal part layer 5
Agranular insular area, dorsal part, layer 5
Primary somatosensory area, mouth, layer 6a (mba)
Primary somatosensory area mouth layer 6a
Primary somatosensory area, mouth, layer 6a
Anteromedial nucleus, ventral part (mba)
Medullary reticular nucleus, ventral part (mba)
Medullary reticular nucleus ventral part
Medullary reticular nucleus, ventral part
Supramammillary nucleus, lateral part (mba)
Primary somatosensory area, trunk, layer 5 (mba)
Primary somatosensory area trunk layer 5
Primary somatosensory area, trunk, layer 5
Interanterodorsal nucleus of the thalamus (mba)
Interanterodorsal nucleus of the thalamus
Anterolateral visual area, layer 4 (mba)
Supramammillary nucleus, medial part (mba)
Interanteromedial nucleus of the thalamus (mba)
Interanteromedial nucleus of the thalamus
Entorhinal area, lateral part, layer 1 (mba)
Orbital area, ventrolateral part, layer 5 (mba)
Orbital area, ventrolateral part, layer 5
Tuberomammillary nucleus, dorsal part (mba)
Temporal association areas, layer 2/3 (mba)
Primary somatosensory area, lower limb, layer 5 (mba)
Primary somatosensory area lower limb layer 5
Primary somatosensory area, lower limb, layer 5
Entorhinal area, medial part, ventral zone, layer 5/6 (mba)
Entorhinal area medial part ventral zone layer 5/6
Entorhinal area, medial part, ventral zone, layer 5/6
Nucleus of the lateral olfactory tract, layer 3 (mba)
Nucleus of the lateral olfactory tract layer 3
Nucleus of the lateral olfactory tract, layer 3
Postpiriform transition area, layers 1 (mba)
Postpiriform transition area, layers 2 (mba)
Postpiriform transition area, layers 3 (mba)
Cerebellar cortex, molecular layer (mba)
Purkinje cell layer of cerebellar cortex
Paramedian lobule, molecular layer (mba)
Folium-tuber vermis (VII), granular layer (mba)
Folium-tuber vermis (VII) granular layer
Folium-tuber vermis (VII), granular layer
Folium-tuber vermis (VII), Purkinje layer (mba)
Folium-tuber vermis (VII) Purkinje layer
Folium-tuber vermis (VII), Purkinje layer
Folium-tuber vermis (VII), molecular layer (mba)
Folium-tuber vermis (VII) molecular layer
Folium-tuber vermis (VII), molecular layer
Primary somatosensory area, unassigned (mba)
Primary somatosensory area, unassigned, layer 1 (mba)
Primary somatosensory area unassigned layer 1
Primary somatosensory area, unassigned, layer 1
Primary somatosensory area, unassigned, layer 2/3 (mba)
Primary somatosensory area unassigned layer 2/3
Primary somatosensory area, unassigned, layer 2/3
Primary somatosensory area, unassigned, layer 4 (mba)
Primary somatosensory area unassigned layer 4
Primary somatosensory area, unassigned, layer 4
Primary somatosensory area, unassigned, layer 5 (mba)
Primary somatosensory area unassigned layer 5
Primary somatosensory area, unassigned, layer 5
Primary somatosensory area, unassigned, layer 6a (mba)
Primary somatosensory area unassigned layer 6a
Primary somatosensory area, unassigned, layer 6a
Primary somatosensory area, unassigned, layer 6b (mba)
Primary somatosensory area unassigned layer 6b
Primary somatosensory area, unassigned, layer 6b
Laterointermediate area, layer 2/3 (mba)
Rostrolateral lateral visual area, layer 1 (mba)
Rostrolateral lateral visual area layer 1
Rostrolateral lateral visual area, layer 1
Rostrolateral lateral visual area, layer 2/3 (mba)
Rostrolateral lateral visual area layer 2/3
Rostrolateral lateral visual area, layer 2/3
Rostrolateral lateral visual area, layer 4 (mba)
Rostrolateral lateral visual area layer 4
Rostrolateral lateral visual area, layer 4
Rostrolateral lateral visual area,layer 5 (mba)
Rostrolateral lateral visual arealayer 5
Rostrolateral lateral visual area,layer 5
Rostrolateral lateral visual area, layer 6a (mba)
Rostrolateral lateral visual area layer 6a
Rostrolateral lateral visual area, layer 6a
Rostrolateral lateral visual area, layer 6b (mba)
Rostrolateral lateral visual area layer 6b
Rostrolateral lateral visual area, layer 6b
Laterolateral anterior visual area (mba)
Laterolateral anterior visual area, layer 1 (mba)
Laterolateral anterior visual area layer 1
Laterolateral anterior visual area, layer 1
Laterolateral anterior visual area, layer 2/3 (mba)
Laterolateral anterior visual area layer 2/3
Laterolateral anterior visual area, layer 2/3
Laterolateral anterior visual area, layer 4 (mba)
Laterolateral anterior visual area layer 4
Laterolateral anterior visual area, layer 4
Laterolateral anterior visual area,layer 5 (mba)
Laterolateral anterior visual arealayer 5
Laterolateral anterior visual area,layer 5
Laterolateral anterior visual area, layer 6a (mba)
Laterolateral anterior visual area layer 6a
Laterolateral anterior visual area, layer 6a
Laterolateral anterior visual area, layer 6b (mba)
Laterolateral anterior visual area layer 6b
Laterolateral anterior visual area, layer 6b
Mediomedial anterior visual area, layer 1 (mba)
Mediomedial anterior visual area layer 1
Mediomedial anterior visual area, layer 1
Mediomedial anterior visual area, layer 2/3 (mba)
Mediomedial anterior visual area layer 2/3
Mediomedial anterior visual area, layer 2/3
Mediomedial anterior visual area, layer 4 (mba)
Mediomedial anterior visual area layer 4
Mediomedial anterior visual area, layer 4
Mediomedial anterior visual area,layer 5 (mba)
Mediomedial anterior visual area,layer 5
Mediomedial anterior visual area, layer 6a (mba)
Mediomedial anterior visual area layer 6a
Mediomedial anterior visual area, layer 6a
Mediomedial anterior visual area, layer 6b (mba)
Mediomedial anterior visual area layer 6b
Mediomedial anterior visual area, layer 6b
Mediomedial posterior visual area, layer 1 (mba)
Mediomedial posterior visual area layer 1
Mediomedial posterior visual area, layer 1
Mediomedial posterior visual area, layer 2/3 (mba)
Mediomedial posterior visual area layer 2/3
Mediomedial posterior visual area, layer 2/3
Mediomedial posterior visual area, layer 4 (mba)
Mediomedial posterior visual area layer 4
Mediomedial posterior visual area, layer 4
Mediomedial posterior visual area,layer 5 (mba)
Mediomedial posterior visual arealayer 5
Mediomedial posterior visual area,layer 5
Mediomedial posterior visual area, layer 6a (mba)
Mediomedial posterior visual area layer 6a
Mediomedial posterior visual area, layer 6a
Mediomedial posterior visual area, layer 6b (mba)
Mediomedial posterior visual area layer 6b
Mediomedial posterior visual area, layer 6b
Prosubiculum, dorsal part, molecular layer (mba)
Prosubiculum dorsal part molecular layer
Prosubiculum, dorsal part, molecular layer
Prosubiculum, dorsal part, pyramidal layer (mba)
Prosubiculum dorsal part pyramidal layer
Prosubiculum, dorsal part, pyramidal layer
Prosubiculum, dorsal part, stratum radiatum (mba)
Prosubiculum dorsal part stratum radiatum
Prosubiculum, dorsal part, stratum radiatum
Prosubiculum, ventral part, molecular layer (mba)
Prosubiculum ventral part molecular layer
Prosubiculum, ventral part, molecular layer
Prosubiculum, ventral part, pyramidal layer (mba)
Prosubiculum ventral part pyramidal layer
Prosubiculum, ventral part, pyramidal layer
Prosubiculum, ventral part, stratum radiatum (mba)
Prosubiculum ventral part stratum radiatum
Prosubiculum, ventral part, stratum radiatum
supra-callosal cerebral white matter (mba)
commissural branch of stria terminalis (mba)
Dorsal part of the lateral geniculate complex, shell (mba)
Dorsal part of the lateral geniculate complex shell
Dorsal part of the lateral geniculate complex, shell
Dorsal part of the lateral geniculate complex, core (mba)
Dorsal part of the lateral geniculate complex core
Dorsal part of the lateral geniculate complex, core
Dorsal part of the lateral geniculate complex, ipsilateral zone (mba)
Dorsal part of the lateral geniculate complex ipsilateral zone
Dorsal part of the lateral geniculate complex, ipsilateral zone
Orbital area, medial part, layer 6b (mba)
Medial accesory oculomotor nucleus (mba)
Posterior intralaminar thalamic nucleus (mba)
Posterior triangular thalamic nucleus (mba)
Hippocampo-amygdalar transition area (mba)
Medial mammillary nucleus, lateral part (mba)
Medial mammillary nucleus, medial part (mba)
Medial mammillary nucleus, posterior part (mba)
Medial mammillary nucleus posterior part
Medial mammillary nucleus, posterior part
Medial mammillary nucleus, dorsal part (mba)
Interpeduncular nucleus, intermediate (mba)
Interpeduncular nucleus, dorsomedial (mba)
Interpeduncular nucleus, dorsolateral (mba)
Interpeduncular nucleus, rostrolateral (mba)
Supraoculomotor periaqueductal gray (mba)
Enriched in cortical layer 5 and the dentate gyrus.
Enriched in striatum and neocortical layers 2 and 5, and in restricted populations within the medulla, pons, midbrain, hippocampus, hypothalamus, thalamus, and olfactory areas.
Enriched in restricted populations within layer 5 of cortex, striatum (amygdala), and hypothalamus. Sparse, scattered expression elsewhere in the brain.
Enriched in cortical layers 2/3/4, thalamus, midbrain, pons, medulla and cerebellum.
Enriched in cortical layer 5. Also expressed in restricted populations throughout the brain, including olfactory areas, hippocampus, lateral septal complex, pallidum, thalamus, hypothalamus, midbrain, hindbrain, and cerebellum.
Reporter expression displays laminar enrichment in rostral cortex and in restricted populations within cortical subplate.
Reporter expression is detected in a subset of cortical interneurons. Enrichment is also detected in restricted populations within olfactory areas, pallidum, hypothalamus, pons, medulla, and cerebellum.
Reporter expression is enriched in layer 5a of cortex and in restricted populations of pons and medulla.
Nucleus of the pudendal nerve to urethral sphincter via pudendal nerve
In human, the connection goes from nucleus of pudendal nerve to urethral sphincter via pudendal nerve. This motor connection projects from the nucleus of pudendal nerve.
nucleus of pudendal nerve (with-axon-in pudendal nerve) (with-axon-presynaptic-element-in urethral sphincter) (implies Homo sapiens motor neuron)
from nucleus of pudendal nerve to urethral sphincter via pudendal nerve
Superior cervical ganglion to lacrimal gland via internal carotid nerve plexus via deep petrosal nerve via vidian nerve via zygomatic nerve via communicating branch to ophthalmic nerve via lacrimal nerve
In human, the sympathetic post-ganglionic connection goes from superior cervical ganglion to lacrimal gland via internal carotid nerve plexus via Deep petrosal nerve via vidian nerve via Zygomatic nerve via Communicating branch of zygomatic nerve via lacrimal nerve. This connection projects from the superior cervical ganglion.
https://www.kenhub.com/en/library/anatomy/the-ophthalmic-branch-of-the-trigeminal-nerve: lacrimal (communicating branch with zygomatic nerve),
superior cervical ganglion (with-axons-in Communicating branch of zygomatic nerve Deep petrosal nerve Zygomatic nerve internal carotid nerve plexus lacrimal nerve vidian nerve) (with-axon-presynaptic-element-in lacrimal gland) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from superior cervical ganglion to lacrimal gland via internal carotid nerve plexus via Deep petrosal nerve via vidian nerve via Zygomatic nerve via Communicating branch of zygomatic nerve via lacrimal nerve
Superior cervical ganglion to sphincter papillae via internal carotid nerve plexus via ophthalmic plexus via long ciliary nerve
A sympathetic post-ganglionic connection goes from superior cervical ganglion to sphincter pupillae via internal carotid nerve plexus via ophthalmic plexus via long ciliary nerve. This connection projects from the superior cervical ganglion.
See figure 6 (Anatomical drawing showing the parasympathetic and sympathetic innervation of the iris in primates. ) . Also see Fig 1 to determine whether we can add all this connectivity. The superior cervical ganglion is located at the C1-C3 vertebral level and, in humans, it lies immediately anterior to the common carotid artery bifurcation (423). Within the superior cervical ganglion, preganglionic axons form nicotinic, cholinergic synapses with postganglionic neurons. The axons of these postganglionic neurons project from the superior cervical ganglion as the internal carotid nerves to the level of the cavernous sinuses where they form the carotid plexus around the carotid arteries. Many of the fibers destined for the eye form the sympathetic root of the ciliary ganglion, which runs along with the ophthalmic artery to enter the orbit. These fibers then traverse the ciliary ganglion to enter the eye via the short ciliary nerves (282, 315). In addition, other sympathetic fibers enter the eye through the long ciliary nerves as well as through the optic canal (315). In addition to containing the neurotransmitter noradrenaline, many postganglionic sympathetic neurons projecting to the eye in mammals also express the vasoconstrictor peptide, neuropeptide Y (NPY) (41, 42, 46, 124, 137, 268, 306, 382), as well as the co-transmitter ATP (295) (Figure 1). Consulted with Gary. Pointed me to Netter 5th edition, Fig. plate 131. Note that UBERON has the Sphincter papillae as the official name and he does not believe that it is a separate than the dilator papillae.
superior cervical ganglion (with-axons-in internal carotid nerve plexus long ciliary nerve ophthalmic plexus) (with-axon-presynaptic-element-in sphincter pupillae) neuron (implies Sympathetic Post-Ganglionic)
from superior cervical ganglion to sphincter pupillae via internal carotid nerve plexus via ophthalmic plexus via long ciliary nerve
Superior cervical ganglion to sphincter pupillae via internal carotid plexus via ophthalmic plexus via short ciliary nerve
A sympathetic post-ganglionic connection goes from superior cervical ganglion to sphincter pupillae via internal carotid nerve plexus via ophthalmic plexus via short ciliary nerve. This connection projects from the superior cervical ganglion.
"Sympathetic nerves enter the orbit via the first and second divisions of the trigeminal nerve and a plexus of nerves surrounding the ophthalmic artery."- See https://journals.lww.com/op-rs/fulltext/2008/09000/human_orbital_sympathetic_nerve_pathways.5.aspx?casa_token=C7ONbY0wblAAAAAA:Sn-z_Vms4b5fPBd8lI1WIQh_9b8YPfych4mLSKRyHqc4yPN-JNskzyA3VpMYCPgoFSgcPXdNiR9Jr_Sl1yvKq-rNoA
superior cervical ganglion (with-axons-in internal carotid nerve plexus ophthalmic plexus short ciliary nerve) (with-axon-presynaptic-element-in sphincter pupillae) neuron (implies Sympathetic Post-Ganglionic)
from superior cervical ganglion to sphincter pupillae via internal carotid nerve plexus via ophthalmic plexus via short ciliary nerve
Superior cervical ganglion to parotid gland via external carotid plexus
A sympathetic post-ganglionic connection goes from superior cervical ganglion to parotid gland via External carotid nerve plexus. This connection projects from the superior cervical ganglion.
superior cervical ganglion (with-axon-in External carotid nerve plexus) (with-axon-presynaptic-element-in parotid gland) neuron (implies Sympathetic Post-Ganglionic)
from superior cervical ganglion to parotid gland via External carotid nerve plexus
Inferior salivatory nucleus to otic ganglion via glossopharyngeal nerve via tympanic nerve via lesser petrosal nerve
A parasympathetic pre-ganglionic connection goes from inferior salivatory nucleus to otic ganglion via glossopharyngeal nerve via tympanic nerve via Lesser petrosal nerve. This connection projects from the inferior salivatory nucleus.
Preganglionic parasympathetic fibers leave the brain stem from the inferior salivatory nucleus in the glossopharyngeal nerve and then run along its tympanic branch followed by the lesser petrosal branch into the otic ganglion.
inferior salivatory nucleus (with-axons-in 9n Lesser petrosal nerve tympanic nerve) (with-axon-presynaptic-element-in otic ganglion) neuron (implies Parasympathetic Pre-Ganglionic)
from inferior salivatory nucleus to otic ganglion via glossopharyngeal nerve via tympanic nerve via Lesser petrosal nerve
Superior salivatory nucleus to pterygopalatine ganglion via facial nerve via greater petrosal nerve via vidian nerve
A parasympathetic pre-ganglionic connection goes from superior salivatory nucleus to pterygopalatine ganglion via facial nerve via Greater petrosal nerve via vidian nerve. This connection projects from the superior salivatory nucleus.
superior salivatory nucleus (with-axons-in 7n Greater petrosal nerve vidian nerve) (with-axon-presynaptic-element-in pterygopalatine ganglion) neuron (implies Parasympathetic Pre-Ganglionic)
from superior salivatory nucleus to pterygopalatine ganglion via facial nerve via Greater petrosal nerve via vidian nerve
T2-T6 intermediolateral cell column of spinal cord to cervicothoracic ganglion-T5 ganglion via T2-T6 white communicating ramus via T2-T6 sympathetic chain
In mouse, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of fifth thoracic segment or Intermediolateral nucleus of fourth thoracic segment or Intermediolateral nucleus of second thoracic segment or Intermediolateral nucleus of sixth thoracic segment or Intermediolateral nucleus of third thoracic segment to Fifth thoracic ganglion or Fourth thoracic ganglion or Second thoracic ganglion or Third thoracic ganglion or cervicothoracic ganglion via white communicating ramus of fifth thoracic spinal nerve, white communicating ramus of fourth thoracic spinal nerve, white communicating ramus of second thoracic spinal nerve, white communicating ramus of sixth thoracic spinal nerve, white communicating ramus of third thoracic spinal nerve via T2 sympathetic chain, T3 sympathetic chain, T4 sympathetic chain, T5 sympathetic chain, T6 sympathetic chain. This connection projects from the Intermediolateral nucleus of fifth thoracic segment, Intermediolateral nucleus of fourth thoracic segment, Intermediolateral nucleus of second thoracic segment, Intermediolateral nucleus of sixth thoracic segment and Intermediolateral nucleus of third thoracic segment.
Intermediolateral nucleus of fifth thoracic segment Intermediolateral nucleus of fourth thoracic segment Intermediolateral nucleus of second thoracic segment Intermediolateral nucleus of sixth thoracic segment Intermediolateral nucleus of third thoracic segment (with-axons-in T2 sympathetic chain T3 sympathetic chain T4 sympathetic chain T5 sympathetic chain T6 sympathetic chain white communicating ramus of fifth thoracic spinal nerve white communicating ramus of fourth thoracic spinal nerve white communicating ramus of second thoracic spinal nerve white communicating ramus of sixth thoracic spinal nerve white communicating ramus of third thoracic spinal nerve) (with-axon-presynaptic-element-in T2 sympathetic chain ganglion T3 sympathetic chain ganglion T4 sympathetic chain ganglion T5 sympathetic chain ganglion cervicothoracic ganglion) neuron (implies Mus musculus Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of fifth thoracic segment or Intermediolateral nucleus of fourth thoracic segment or Intermediolateral nucleus of second thoracic segment or Intermediolateral nucleus of sixth thoracic segment or Intermediolateral nucleus of third thoracic segment to Fifth thoracic ganglion or Fourth thoracic ganglion or Second thoracic ganglion or Third thoracic ganglion or cervicothoracic ganglion via white communicating ramus of fifth thoracic spinal nerve, white communicating ramus of fourth thoracic spinal nerve, white communicating ramus of second thoracic spinal nerve, white communicating ramus of sixth thoracic spinal nerve, white communicating ramus of third thoracic spinal nerve via T2 sympathetic chain, T3 sympathetic chain, T4 sympathetic chain, T5 sympathetic chain, T6 sympathetic chain
Removed latin name for species (mouse) in the knowledge statement.
Cervicothoracic ganglion T2-T5 ganglion to interscapsular brown adipose tissue via Cervicothoracic T2-T5 gray ramus via spinal nerve
In mouse, the sympathetic post-ganglionic connection goes from Fifth thoracic ganglion or Fourth thoracic ganglion or Second thoracic ganglion or Third thoracic ganglion or cervicothoracic ganglion to interscapular brown adipose tissue via Gray communicating ramus of cervicothoracic ganglion to first thoracic spinal nerve, gray communicating ramus of second thoracic nerve, gray communicating ramus of the fifth thoracic nerve, gray communicating ramus of the fourth thoracic nerve, gray communicating ramus of third thoracic nerve via spinal nerve. This connection projects from the cervicothoracic ganglion, Fifth thoracic ganglion, Fourth thoracic ganglion, Second thoracic ganglion and Third thoracic ganglion.
T2 sympathetic chain ganglion T3 sympathetic chain ganglion T4 sympathetic chain ganglion T5 sympathetic chain ganglion cervicothoracic ganglion (with-axons-in Gray communicating ramus of cervicothoracic ganglion to first thoracic spinal nerve gray communicating ramus of second thoracic nerve gray communicating ramus of the fifth thoracic nerve gray communicating ramus of the fourth thoracic nerve gray communicating ramus of third thoracic nerve spinal nerve) (with-axon-presynaptic-element-in iBAT) neuron (implies Mus musculus Sympathetic Post-Ganglionic)
from Fifth thoracic ganglion or Fourth thoracic ganglion or Second thoracic ganglion or Third thoracic ganglion or cervicothoracic ganglion to interscapular brown adipose tissue via Gray communicating ramus of cervicothoracic ganglion to first thoracic spinal nerve, gray communicating ramus of second thoracic nerve, gray communicating ramus of the fifth thoracic nerve, gray communicating ramus of the fourth thoracic nerve, gray communicating ramus of third thoracic nerve via spinal nerve
should revisit to change "spinal nerve" and perhaps make it more specific.\ncorrected partial order for vias, and re-ordered the spinal segments in the diagram.\nremoved latin name for mouse species
Myenteric ganglion of small intestine to celiac ganglion via mesenteric nerve
In guniea pig, the enteric connection goes from Myenteric ganglion of small intestine to celiac ganglion via Mesenteric nerve. This connection projects from the Myenteric ganglion of small intestine.
Don't say what nerve. Retrograde tracing study in adult guinea pig. "This work directly confirms what is readily deducable from physiological and structural studies; that nerve cell bodies in the small intestine project to the coeliac ganglia (see Introduction). It shows that these cells are confined to the myenteric plexus, as Schofield [23] concluded, and that their numbers increase anally along the small intestine" Gary: Intestinofugal neurons coming enteric gangla to pre-vertebral ganglia; changed to mesenteric nerve
Myenteric ganglion of small intestine (with-axon-in Mesenteric nerve) (with-axon-presynaptic-element-in celiac ganglion) neuron (implies Cavia porcellus Enteric)
from Myenteric ganglion of small intestine to celiac ganglion via Mesenteric nerve
Inferior vagus X ganglion to thymus gland via vagus nerve
In rat, the connection goes from inferior vagus X ganglion to thymus via vagus nerve. This sensory connection projects from the inferior vagus X ganglion.
After bilateral injection of HRP in the two lobes of the thymus about 600-800 labelled neurons were found in the NGs of the vagus nerves, and about 400 in the DRGs C1-C 7, with a maximum in C4-C 5.
inferior vagus X ganglion (implies Rattus norvegicus sensory neuron)
from inferior vagus X ganglion to thymus via vagus nerve
updated to include vagus nerve as axon leading to sensory terminal.
Parvocellular oculomotor nucleus to main ciliary ganglion via oculomotor nerve
A parasympathetic pre-ganglionic connection goes from parvocellular oculomotor nucleus to main ciliary ganglion via oculomotor nerve. This connection projects from the parvocellular oculomotor nucleus.
As per our preferred rule, we are using the preferred label from UBERON, parvocellular oculomotor nucleus, rather than the more common Edinger-Westphal nucleus.
EW (with-axon-in 3n) (with-axon-presynaptic-element-in main ciliary ganglion) neuron (implies Parasympathetic Pre-Ganglionic)
from parvocellular oculomotor nucleus to main ciliary ganglion via oculomotor nerve
Superior salivatory nucleus to submandibular ganglion via facial nerve via chorda tympani via lingual nerve
A parasympathetic pre-ganglionic connection goes from superior salivatory nucleus to submandibular ganglion via facial nerve via chorda tympani branch of facial nerve via lingual nerve. This connection projects from the superior salivatory nucleus.
We elected not to use the longer preferred label, chorda tympani branch of facial nerve, as the term chorda tympani is unambiguous in this context.
superior salivatory nucleus (with-axons-in 7n chorda tympani branch of facial nerve lingual nerve) (with-axon-presynaptic-element-in submandibular ganglion) neuron (implies Parasympathetic Pre-Ganglionic)
from superior salivatory nucleus to submandibular ganglion via facial nerve via chorda tympani branch of facial nerve via lingual nerve
parasympathetic root of submandibular ganglion
radix parasympathica ganglii submandibularis
Main clilary ganglion to ciliary muscle via short ciliary nerve
A parasympathetic post-ganglionic connection goes from main ciliary ganglion to ciliary muscle via short ciliary nerve. This connection projects from the main ciliary ganglion.
https://radiopaedia.org/articles/short-ciliary-nerves?lang=us. Ask Gary whether we should add "Branch of V1 to the ontology. Looks like from radiopaedia that there is an intermediary between V1 and the short ciliary nerve. Also UBERON has an error in the pre- vs post-ganglionic.
main ciliary ganglion (with-axon-in short ciliary nerve) (with-axon-presynaptic-element-in ciliary muscle) neuron (implies Parasympathetic Post-Ganglionic)
from main ciliary ganglion to ciliary muscle via short ciliary nerve
Main clilary ganglion to sphincter papillae via short ciliary nerve
A parasympathetic post-ganglionic connection goes from main ciliary ganglion to sphincter pupillae via short ciliary nerve. This connection projects from the main ciliary ganglion.
main ciliary ganglion (with-axon-in short ciliary nerve) (with-axon-presynaptic-element-in sphincter pupillae) neuron (implies Parasympathetic Post-Ganglionic)
from main ciliary ganglion to sphincter pupillae via short ciliary nerve
Otic ganglion to parotid gland via auriculotemporal nerve
A parasympathetic post-ganglionic connection goes from otic ganglion to parotid gland via Auriculotemporal nerve. This connection projects from the otic ganglion.
otic ganglion (with-axon-in Auriculotemporal nerve) (with-axon-presynaptic-element-in parotid gland) neuron (implies Parasympathetic Post-Ganglionic)
from otic ganglion to parotid gland via Auriculotemporal nerve
Pterygopalantine ganglion to lacrimal gland via communicating branch of zygomatic nerve via lacrimal nerve
A parasympathetic post-ganglionic connection goes from pterygopalatine ganglion to lacrimal gland via Communicating branch of zygomatic nerve via lacrimal nerve. This connection projects from the pterygopalatine ganglion.
pterygopalatine ganglion (with-axons-in Communicating branch of zygomatic nerve lacrimal nerve) (with-axon-presynaptic-element-in lacrimal gland) neuron (implies Parasympathetic Post-Ganglionic)
from pterygopalatine ganglion to lacrimal gland via Communicating branch of zygomatic nerve via lacrimal nerve
Pterygopalantine ganglion to nasal cavity mucosa via nasopalantine nerve
A parasympathetic post-ganglionic connection goes from pterygopalatine ganglion to nasal cavity mucosa via nasopalatine nerve. This connection projects from the pterygopalatine ganglion.
Nasopalantine nerve as per Gary Mawe of SPARC SAWG
pterygopalatine ganglion (with-axon-in nasopalatine nerve) (with-axon-presynaptic-element-in nasal cavity mucosa) neuron (implies Parasympathetic Post-Ganglionic)
from pterygopalatine ganglion to nasal cavity mucosa via nasopalatine nerve
Submandibular ganglion to sublingual gland via nerve fiber from submandibular ganglion to sublingual gland
A parasympathetic post-ganglionic connection goes from submandibular ganglion to sublingual gland via Nerve fiber from submandibular ganglion to sublingual gland. This connection projects from the submandibular ganglion.
Original name was "Submandibular ganglion to sublingual gland via short unnamed nerve bundles" but we coded "unnamed nerve bundles" as the generic "postganglioic parasympathetic fiber"
submandibular ganglion (with-axon-in Nerve fiber from submandibular ganglion to sublingual gland) (with-axon-presynaptic-element-in sublingual gland) neuron (implies Parasympathetic Post-Ganglionic)
from submandibular ganglion to sublingual gland via Nerve fiber from submandibular ganglion to sublingual gland
Submandibular ganglion to submandibular gland via nerve fiber from submandibular ganglion to submandibular gland
A parasympathetic post-ganglionic connection goes from submandibular ganglion to submandibular gland via Nerve fiber from submandibular ganglion to submandibular gland. This connection projects from the submandibular ganglion.
Original name was "Submandibular ganglion to submandibular gland via short unnamed nerve bundles" but we coded "unnamed nerve bundles" as the generic "postganglioic parasympathetic fiber"
submandibular ganglion (with-axon-in Nerve fiber from submandibular ganglion to submandibular gland) (with-axon-presynaptic-element-in submandibular gland) neuron (implies Parasympathetic Post-Ganglionic)
from submandibular ganglion to submandibular gland via Nerve fiber from submandibular ganglion to submandibular gland
Submandibular ganglion to mouth mucosa via nerve fiber from submandibular ganglion to mouth mucosa
A parasympathetic post-ganglionic connection goes from submandibular ganglion to mouth mucosa via Nerve fiber from submandibular ganglion to mouth mucosa. This connection projects from the submandibular ganglion.
Original name is "Submandibular ganglion to oral mucosa via short unnamed nerve bundles". UBERON has a preferred lable of "mouth mucosa" also there is some ambiguity as to whether it is an exact syononym with "oral mucosa". It is not clear. So we are going to assume it is synonymous and use the preferred term and also code unnamed nerve bundles as post-ganglionic parasympathetic fiber as per populations 10 and 11.
submandibular ganglion (with-axon-in Nerve fiber from submandibular ganglion to mouth mucosa) (with-axon-presynaptic-element-in mouth mucosa) neuron (implies Parasympathetic Post-Ganglionic)
from submandibular ganglion to mouth mucosa via Nerve fiber from submandibular ganglion to mouth mucosa
S2-4 sacral parasympathetic nucleus to inferior hypogastric plexus ganglion via pelvic splanchnic nerve
In human, the parasympathetic pre-ganglionic connection goes from S2 sacral parasympathetic nucleus or S3 sacral parasympathetic nucleus or S4 sacral parasympathetic nucleus to inferior hypogastric nerve plexus ganglion via pelvic splanchnic nerve. This connection projects from the S2 sacral parasympathetic nucleus, S3 sacral parasympathetic nucleus and S4 sacral parasympathetic nucleus.
See comment: https://www.ebi.ac.uk/ols/ontologies/uberon/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FUBERON_0016508
S2 sacral parasympathetic nucleus S3 sacral parasympathetic nucleus S4 sacral parasympathetic nucleus (with-axon-in pelvic splanchnic nerve) (with-axon-presynaptic-element-in inferior hypogastric nerve plexus ganglion) (projecting-onto neuron type mmset4 3 neuron type mmset4 3e) neuron (implies Homo sapiens Parasympathetic Pre-Ganglionic)
from S2 sacral parasympathetic nucleus or S3 sacral parasympathetic nucleus or S4 sacral parasympathetic nucleus to inferior hypogastric nerve plexus ganglion via pelvic splanchnic nerve
@ilias - are these forward connections correct? if so, shouldn't this population be marked as a male population?
inferior hypogastric plexus ganglion to corpus cavernosum penis via inferior hypogastric plexus to the prostatic nerve plexus to cavernous nerve of penis
In male human, the parasympathetic post-ganglionic connection goes from inferior hypogastric nerve plexus ganglion to corpus cavernosum penis via inferior hypogastric nerve plexus via prostatic nerve plexus via Penile cavernous nerve. This connection projects from the inferior hypogastric nerve plexus ganglion.
Caroline and Gary; Ask Janet: As per figure 1 in https://www.sciencedirect.com/science/article/pii/S0074769606480037#fig0001 looks to be the equivalent in rat.
male inferior hypogastric nerve plexus ganglion (with-axons-in Penile cavernous nerve inferior hypogastric nerve plexus prostatic nerve plexus) (with-axon-presynaptic-element-in corpus cavernosum penis) neuron (implies Homo sapiens Parasympathetic Post-Ganglionic)
from inferior hypogastric nerve plexus ganglion to corpus cavernosum penis via inferior hypogastric nerve plexus via prostatic nerve plexus via Penile cavernous nerve
pelvic ganglion to corpus cavernosum clitoridis via inferior hypogastric plexus to the uterovaginal plexus to clitoral cavernous nerve
In female human, the parasympathetic post-ganglionic connection goes from pelvic ganglion to corpus cavernosum clitoridis via inferior hypogastric nerve plexus via uterovaginal nerve plexus via Clitoral cavernous nerve. This connection projects from the pelvic ganglion.
female pelvic ganglion (with-axons-in Clitoral cavernous nerve inferior hypogastric nerve plexus uterovaginal nerve plexus) (with-axon-presynaptic-element-in corpus cavernosum clitoridis) neuron (implies Homo sapiens Parasympathetic Post-Ganglionic)
from pelvic ganglion to corpus cavernosum clitoridis via inferior hypogastric nerve plexus via uterovaginal nerve plexus via Clitoral cavernous nerve
L6-S1 Sacral parasympathetic nucleus to pelvic ganglion (major pelvic ganglion + accessory pelvic ganglion) via pelvic nerve
In Norway rat, rat and rattus norvegicus, the parasympathetic pre-ganglionic connection goes from L6 parasympathetic nucleus or S1 sacral parasympathetic nucleus to accessory pelvic ganglion or major pelvic ganglion via pelvic splanchnic nerve. This connection projects from the L6 parasympathetic nucleus and S1 sacral parasympathetic nucleus.
Caroline and Gary; changed to pelvic ganglion from major pelvic ganglion as there are also contributions from the accessory pelvic ganglia based on Keast (1999): In rats the accessory ganglia contribute mainly to the supply of the reproductive organs. (https://www.sciencedirect.com/science/article/pii/S0074769608617787?via%3Dihub). Also added levels based on Keast and references therein. Ask Janet whether the accessory ganglia contribute to this or whether it should just be major pelvic ganglia. Answer: Yes, the connections are shared among the MPG and AG, so we should change to pelvic ganglion (but map to ILX term until UBERON is changed).
L6 parasympathetic nucleus S1 sacral parasympathetic nucleus (with-axon-in pelvic splanchnic nerve) (with-axon-presynaptic-element-in MPG accessory pelvic ganglion) (projecting-onto neuron type mmset4 3a neuron type mmset4 3b neuron type mmset4 3c) neuron (implies Rattus norvegicus Parasympathetic Pre-Ganglionic)
from L6 parasympathetic nucleus or S1 sacral parasympathetic nucleus to accessory pelvic ganglion or major pelvic ganglion via pelvic splanchnic nerve
this population should have been marked as Male, right?
pelvic ganglion (major pelvic ganglion + accessory pelvic ganglion) to corpus cavernosum penis via penile cavernous nerve
In male Norway rat, rat and rattus norvegicus, the parasympathetic post-ganglionic connection goes from accessory pelvic ganglion or major pelvic ganglion to corpus cavernosum penis via Penile cavernous nerve. This connection projects from the accessory pelvic ganglion and major pelvic ganglion.
Needs verification; Ask Janet. Is Fig 1, https://onlinelibrary.wiley.com/doi/epdf/10.1002/ar.1092240112, equivalent to the connection in Fig 1 https://www.sciencedirect.com/science/article/pii/S0074769606480037#fig0001 but according to Arellano et al: "The precise axonal composition and role of the cavernous nerve in autonomic innervation of the penis requires further studies since we did not found an anatomical connection of this nerve with the penis." Also from Arellano: the cavernous nerve (also known as penile nerve, or main penile nerve) so synonymous
male MPG accessory pelvic ganglion (with-axon-in Penile cavernous nerve) (with-axon-presynaptic-element-in corpus cavernosum penis) neuron (implies Rattus norvegicus Parasympathetic Post-Ganglionic)
from accessory pelvic ganglion or major pelvic ganglion to corpus cavernosum penis via Penile cavernous nerve
pelvic ganglion (major pelvic ganglion + accessory pelvic ganglion) to corpus spongiosum penis via penile cavernous nerve
In male Norway rat, rat and rattus norvegicus, the parasympathetic post-ganglionic connection goes from accessory pelvic ganglion or major pelvic ganglion to corpus spongiosum of penis via Penile cavernous nerve. This connection projects from the accessory pelvic ganglion and major pelvic ganglion.
male MPG accessory pelvic ganglion (with-axon-in Penile cavernous nerve) (with-axon-presynaptic-element-in corpus spongiosum of penis) neuron (implies Rattus norvegicus Parasympathetic Post-Ganglionic)
from accessory pelvic ganglion or major pelvic ganglion to corpus spongiosum of penis via Penile cavernous nerve
pelvic ganglion (major pelvic ganglion + accessory pelvic ganglion) to bulbo-urethral gland via penile cavernous nerve
In male Norway rat, rat and rattus norvegicus, the parasympathetic post-ganglionic connection goes from accessory pelvic ganglion or major pelvic ganglion to bulbo-urethral gland via Penile cavernous nerve. This connection projects from the accessory pelvic ganglion and major pelvic ganglion.
male MPG accessory pelvic ganglion (with-axon-in Penile cavernous nerve) (with-axon-presynaptic-element-in bulbo-urethral gland) neuron (implies Rattus norvegicus Parasympathetic Post-Ganglionic)
from accessory pelvic ganglion or major pelvic ganglion to bulbo-urethral gland via Penile cavernous nerve
nucleus of the solitary tract to ovarian ganglion via vagus nerve via aortic plexus
An alert was added to indicate that limited evidence is available for this projection and that additional evidence may be needed. The general consensus among anatomists consulted is that there is no parasympathetic innervation of the ovary in humans. However, in rats, Gerendai and colleagues have provided evidence of a parasympathetic innervation of the ovaries using transsynaptic tracing techniques. We added the projections represented in Figure 1 of Gerendai (2002) et al Microscopy Research and Technique Volume 59, Issue 6 p. 474-483 but note that transsynaptic tracing studies can be difficult to interpret and that additional evidence may be needed.
In female Norway rat, rat and rattus norvegicus, the parasympathetic pre-ganglionic connection goes from nucleus of solitary tract to ovarian ganglion via vagus nerve via aortic plexus. This connection projects from the nucleus of solitary tract.
female nucleus of solitary tract (with-axons-in 10n aortic plexus) (with-axon-presynaptic-element-in ovarian ganglion) (projecting-onto neuron type mmset4 5) neuron (implies Rattus norvegicus Parasympathetic Pre-Ganglionic)
from nucleus of solitary tract to ovarian ganglion via vagus nerve via aortic plexus
ovarian ganglion to ovary via ovarian nerve plexus
In female Norway rat, rat and rattus norvegicus, the parasympathetic post-ganglionic connection goes from ovarian ganglion to ovary via ovarian nerve plexus. This connection projects from the ovarian ganglion.
female ovarian ganglion (with-axon-in ovarian nerve plexus) (with-axon-presynaptic-element-in ovary) neuron (implies Rattus norvegicus Parasympathetic Post-Ganglionic)
from ovarian ganglion to ovary via ovarian nerve plexus
...or this one? https://scicrunch.org/scicrunch/interlex/view/ilx_0793832?searchTerm=ILX:0793833\nIlias is this the correct anatomical entity for origin? or should it be ovarian ganglion? http://uri.interlex.org/base/ilx_0794910\nadjusted the species for export (species had 3 options for rat).
nucleus ambiguus to ovarian ganglion via vagus nerve via aortic plexus
In female Norway rat, rat and rattus norvegicus, the parasympathetic pre-ganglionic connection goes from nucleus ambiguus to ovarian ganglion via vagus nerve via aortic plexus. This connection projects from the nucleus ambiguus.
female Amb (with-axons-in 10n aortic plexus) (with-axon-presynaptic-element-in ovarian ganglion) (projecting-onto neuron type mmset4 5) neuron (implies Rattus norvegicus Parasympathetic Pre-Ganglionic)
from nucleus ambiguus to ovarian ganglion via vagus nerve via aortic plexus
dorsal motor nucleus of vagus nerve to ovarian ganglion via vagus nerve via aortic plexus
In female Norway rat, rat and rattus norvegicus, the parasympathetic pre-ganglionic connection goes from dorsal motor nucleus of vagus nerve to ovarian ganglion via vagus nerve via aortic plexus. This connection projects from the dorsal motor nucleus of vagus nerve.
Caroline and Gary; normalized the term "vagal nuclei" to its 3 parts
female dorsal motor nucleus of vagus nerve (with-axons-in 10n aortic plexus) (with-axon-presynaptic-element-in ovarian ganglion) (projecting-onto neuron type mmset4 5) neuron (implies Rattus norvegicus Parasympathetic Pre-Ganglionic)
from dorsal motor nucleus of vagus nerve to ovarian ganglion via vagus nerve via aortic plexus
inferior vagus X ganglion to ovary via vagus and inferior vagus X ganglion to NTS via vagus
In female rat, the connection goes from inferior vagus X ganglion to nucleus of solitary tract via root of vagus nerve; from inferior vagus X ganglion to ovary via vagus nerve. This sensory connection projects from the inferior vagus X ganglion.
female inferior vagus X ganglion (with-axon-in rX) (with-axon-presynaptic-element-in nucleus of solitary tract) (implies Rattus norvegicus sensory neuron)
from inferior vagus X ganglion to nucleus of solitary tract via root of vagus nerve from inferior vagus X ganglion to ovary via vagus nerve
this has been updated and **CHANGED** from what is written for A2BvC. it has 2 different terms for vagus nerve; using the root of vagus nerve projecting centrally, and the vagus nerve as the axon leading to sensory terminal.\nwe need to handle the text that comes in from NeuronDM for Alerts.
T4–L2 intermediolateral cell columns to pre vertebral sympathetic ganglia in abdominal aortic plexus via greater splanchnic nerve OR lesser splanchnic nerve
In female Norway rat, rat and rattus norvegicus, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of eleventh thoracic segment or Intermediolateral nucleus of fifth thoracic segment or Intermediolateral nucleus of first lumbar segment or Intermediolateral nucleus of fourth thoracic segment or Intermediolateral nucleus of ninth thoracic segment or Intermediolateral nucleus of second lumbar segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of sixth thoracic segment or Intermediolateral nucleus of tenth thoracic segment or Intermediolateral nucleus of thirteenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to prevertebral sympathetic ganglion in abdominal aortic plexus via greater splanchnic nerve, lesser splanchnic nerve. This connection projects from the Intermediolateral nucleus of eighth thoracic segment, Intermediolateral nucleus of eleventh thoracic segment, Intermediolateral nucleus of fifth thoracic segment, Intermediolateral nucleus of first lumbar segment, Intermediolateral nucleus of fourth thoracic segment, Intermediolateral nucleus of ninth thoracic segment, Intermediolateral nucleus of second lumbar segment, Intermediolateral nucleus of seventh thoracic segment, Intermediolateral nucleus of sixth thoracic segment, Intermediolateral nucleus of tenth thoracic segment, Intermediolateral nucleus of thirteenth thoracic segment and Intermediolateral nucleus of twelfth thoracic segment.
female Intermediolateral nucleus of eighth thoracic segment Intermediolateral nucleus of eleventh thoracic segment Intermediolateral nucleus of fifth thoracic segment Intermediolateral nucleus of first lumbar segment Intermediolateral nucleus of fourth thoracic segment Intermediolateral nucleus of ninth thoracic segment Intermediolateral nucleus of second lumbar segment Intermediolateral nucleus of seventh thoracic segment Intermediolateral nucleus of sixth thoracic segment Intermediolateral nucleus of tenth thoracic segment Intermediolateral nucleus of thirteenth thoracic segment Intermediolateral nucleus of twelfth thoracic segment (with-axons-in greater splanchnic nerve lesser splanchnic nerve) (with-axon-presynaptic-element-in prevertebral sympathetic ganglion in abdominal aortic plexus) (projecting-onto neuron type mmset4 9) neuron (implies Rattus norvegicus Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of eleventh thoracic segment or Intermediolateral nucleus of fifth thoracic segment or Intermediolateral nucleus of first lumbar segment or Intermediolateral nucleus of fourth thoracic segment or Intermediolateral nucleus of ninth thoracic segment or Intermediolateral nucleus of second lumbar segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of sixth thoracic segment or Intermediolateral nucleus of tenth thoracic segment or Intermediolateral nucleus of thirteenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to prevertebral sympathetic ganglion in abdominal aortic plexus via greater splanchnic nerve, lesser splanchnic nerve
pre vertebral sympathetic ganglia in abdominal aortic plexus to ovary via aortic plexus to ovarian nerve plexus
In female human, Norway rat, rat and rattus norvegicus, the sympathetic post-ganglionic connection goes from prevertebral sympathetic ganglion in abdominal aortic plexus to ovary via aortic plexus via ovarian nerve plexus. This connection projects from the prevertebral sympathetic ganglion in abdominal aortic plexus.
female prevertebral sympathetic ganglion in abdominal aortic plexus (with-axons-in aortic plexus ovarian nerve plexus) (with-axon-presynaptic-element-in ovary) neuron (implies Homo sapiens Rattus norvegicus Sympathetic Post-Ganglionic)
from prevertebral sympathetic ganglion in abdominal aortic plexus to ovary via aortic plexus via ovarian nerve plexus
T5-T9 intermediolateral cell columns to pre vertebral sympathetic ganglia in abdominal aortic plexus via greater splanchnic nerve OR lesser splanchnic nerve
In female human, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of fifth thoracic segment or Intermediolateral nucleus of ninth thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of sixth thoracic segment to prevertebral sympathetic ganglion in abdominal aortic plexus via greater splanchnic nerve, lesser splanchnic nerve. This connection projects from the Intermediolateral nucleus of eighth thoracic segment, Intermediolateral nucleus of fifth thoracic segment, Intermediolateral nucleus of ninth thoracic segment, Intermediolateral nucleus of seventh thoracic segment and Intermediolateral nucleus of sixth thoracic segment.
female Intermediolateral nucleus of eighth thoracic segment Intermediolateral nucleus of fifth thoracic segment Intermediolateral nucleus of ninth thoracic segment Intermediolateral nucleus of seventh thoracic segment Intermediolateral nucleus of sixth thoracic segment (with-axons-in greater splanchnic nerve lesser splanchnic nerve) (with-axon-presynaptic-element-in prevertebral sympathetic ganglion in abdominal aortic plexus) (projecting-onto neuron type mmset4 9) neuron (implies Homo sapiens Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of fifth thoracic segment or Intermediolateral nucleus of ninth thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of sixth thoracic segment to prevertebral sympathetic ganglion in abdominal aortic plexus via greater splanchnic nerve, lesser splanchnic nerve
@ilias - are these forward connections correctly identified? (they were ingested this way). If so, shouldn't this population be marked as "Female"
T5-T8 intermediolateral cell column to adrenal medulla via greater splanchnic nerve
In human, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of fifth thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of sixth thoracic segment to adrenal medulla via greater splanchnic nerve. This connection projects from the Intermediolateral nucleus of eighth thoracic segment, Intermediolateral nucleus of fifth thoracic segment, Intermediolateral nucleus of seventh thoracic segment and Intermediolateral nucleus of sixth thoracic segment.
as per Caroline: the adrenal medulla is the only place in the body where there is no post-ganglionic sympathetic projection. Spinal levels from plate 346 Netter 4th edition
Intermediolateral nucleus of eighth thoracic segment Intermediolateral nucleus of fifth thoracic segment Intermediolateral nucleus of seventh thoracic segment Intermediolateral nucleus of sixth thoracic segment (with-axon-in greater splanchnic nerve) (with-axon-presynaptic-element-in adrenal medulla) neuron (implies Homo sapiens Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of fifth thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of sixth thoracic segment to adrenal medulla via greater splanchnic nerve
did this destination (adrenal medulla) not get specified with a URI in neuronDM?
T5-T8 intermedio lateral cell column to Celiac ganglion via Greater splanchnic nerves
In human, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of fifth thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of sixth thoracic segment to celiac ganglion via greater splanchnic nerve. This connection projects from the Intermediolateral nucleus of eighth thoracic segment, Intermediolateral nucleus of fifth thoracic segment, Intermediolateral nucleus of seventh thoracic segment and Intermediolateral nucleus of sixth thoracic segment.
Intermediolateral nucleus of eighth thoracic segment Intermediolateral nucleus of fifth thoracic segment Intermediolateral nucleus of seventh thoracic segment Intermediolateral nucleus of sixth thoracic segment (with-axon-in greater splanchnic nerve) (with-axon-presynaptic-element-in celiac ganglion) neuron (implies Homo sapiens Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of fifth thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of sixth thoracic segment to celiac ganglion via greater splanchnic nerve
acetylcholine receptor, neuronal, nicotinic, alpha-4 subunit
cholinergic receptor, nicotinic, alpha polypeptide 4
neuronal acetylcholine receptor subunit alpha-4
ca(2+)/calmodulin-activated adenylyl cyclase
solute carrier family 7 (cationic amino acid transporter, y+ system), member 3
pre-pro-arginine-vasopressin-neurophysin II
vitamin D-dependent calcium-binding protein, avian-type
calcitonin/calcitonin-related polypeptide, alpha
cholinergic receptor, muscarinic 3, cardiac
striatal cannabinoid receptor type 1 protein
gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
gamma-aminobutyric acid receptor subunit alpha-1
gamma-aminobutyric acid type A receptor subunit alpha 1
gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4
gamma-aminobutyric acid receptor subunit alpha-4
gamma-aminobutyric acid type A receptor subunit alpha 4
gamma-aminobutyric acid (GABA) A receptor, subunit delta
gamma-aminobutyric acid receptor subunit delta
glutamate receptor, ionotropic, AMPA1 (alpha 1)
glutamate receptor, ionotropic, AMPA4 (alpha 4)
5-hydroxytryptamine (serotonin) receptor 2C
5-hydroxytryptamine (serotonin) receptor 3A
5-hydroxytryptamine (serotonin) transporter
Sodium-dependent serotonin transporter (5HT transporter) (5HTT)
solute carrier family 6 (neurotransmitter transporter, serotonin), member 4
N-ethylmaleimide sensitive fusion protein
suppressor of K(+) transport growth defect 2
calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A
dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A
phosphodiesterase 1A, calmodulin-dependent
nuclear receptor subfamily 1 group C member 3
peroxisome proliferator activated receptor gamma
peroxisome proliferator activated receptor gamma 2
peroxisome proliferator activated receptor gamma 4
peroxisome proliferator-activated receptor gamma
peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
peroxisome proliferator-activated receptor gamma coactivator 1-alpha
heparin-binding growth-associated molecule
retinally abundant regulator of G-protein signaling
solute carrier family 18 (vesicular monoamine), member 3
downregulated during adipocyte differentiation-1
transforming growth factor beta-3 proprotein
short transient receptor potential channel 5
transient receptor potential cation channel, subfamily C, member 5
vtransient receptor potential cation channel, subfamily C, member 5
short transient receptor potential channel 6
transient receptor potential cation channel, subfamily C, member 6
solute carrier family 32 (GABA vesicular transporter), member 1
vasicular inhibitory amino acid transporter 10D
pituitary adenylate cyclase-activating polypeptide type II receptor
vasoactive intestinal peptide receptor 1
vasoactive intestinal polypeptide receptor 1
pituitary adenylate cyclase-activating polypeptide type III receptor
vasoactive intestinal polypeptide receptor 2
wingless-related MMTV integration site 2
wingless-type MMTV integration site family, member 2
wingless-related MMTV integration site 5A
wingless-type MMTV integration site family, member 5A
probable proton-coupled zinc antiporter SLC30A3
solute carrier family 30 (zinc transporter), member 3
Regulator of G-protein signaling 7 (RGS7)
nuclear receptor subfamily 3 group B member 3
cAMP-specific 3',5'-cyclic phosphodiesterase 7B
guanylate cyclase soluble subunit beta-1
guanylate cyclase soluble subunit beta-3
NO-sensitive guanylyl cyclase beta 1 subunit
soluble guanylate cyclase beta-1 subunit
calcium-activated potassium channel subunit beta-4
calcium-activated potassium channel, subfamily M subunit beta-4
large conductance calcium-dependent potassium ion channel beta 4 subunit
potassium large conductance calcium-activated channel, subfamily M, beta member 4
guanylate cyclase soluble subunit alpha-1
guanylate cyclase soluble subunit alpha-3
striatum-specific G-protein coupled receptor
calcium-activated potassium channel subunit beta-2
calcium-activated potassium channel, subfamily M subunit beta-2
potassium large conductance calcium-activated channel, subfamily M, beta member 2
carbohydrate (keratan sulfate Gal-6) sulfotransferase 1
galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 1
N-acetylglucosamine-6-O-sulfotransferase 1
differentiation-associated Na(+)-dependent inorganic phosphate cotransporter
solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6
solute carrier family 17 (vesicular glutamate transporter), member 6
cysteine-rich and single thrombospondin domain-containing protein 3
thrombospondin type 1 domain containing gene Rspondin
solute carrier family 39 (zinc transporter), member 1, pseudogene
cGMP-dependent 3',5'-cyclic phosphodiesterase
Rho guanine nucleotide exchange factor 10
Rho guanine nucleotide exchange factor (GEF) 10
cysteine-rich and single thrombospondin domain-containing protein 2
dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A
cGMP-binding cGMP-specific phosphodiesterase
cGMP-specific 3',5'-cyclic phosphodiesterase
N-methyl-D-aspartate receptor subtype 3A
cholinergic receptor, muscarinic 2, cardiac
heparan sulfate (glucosamine) 3-O-sulfotransferase 4
heparan sulfate glucosamine 3-O-sulfotransferase 4
Mammalia retina ganglionic layer of retina +Glu projection neuron (implies (with-axons-in LGB SCN brachium of superior colliculus superior colliculus) +GABA A-gated anionic channel +GABA C-gated anionic channel +Glycine-gated chloride channel +nAChR +NMDA +AMPA +Kainate glutamate-gated cationic channel)
strata (grisea et alba) colliculi cranialis
strata (grisea et alba) colliculi superioris
NMDA-type glutamate-gated cationic channel
Kainate glutamate-gated cationic channel
Mammalia retina INL Bipolar +Glu intrinsic neuron (implies (with-axon-in IPL) +GABAR +GluR +Glycine-gated chloride channel)
Mammalia retina INL BP +Glu interneuron (implies (with-axon-in IPL) +GABAR +GluR +Glycine-gated chloride channel)
Mammalia retina IPL +DA +GABA +Gly intrinsic neuron (implies (with-dendrite-in IPL))
Mammalia retina IPL +DA +GABA +Gly interneuron (implies (with-dendrite-in IPL))
Mammalia retina INL +GABA intrinsic neuron (implies (with-axon-in OPL))
Mammalia retina INL +GABA interneuron (implies (with-axon-in OPL))
Mammalia neocortex (unionOf L4 L5 L6) Pyramidal +Glu projection neuron (implies (with-axons-in claustrum of brain superior colliculus))
Mammalia CTX (unionOf L4 L5 L6) PC +Glu projection neuron (implies (with-axons-in claustrum of brain superior colliculus))
internal granular layer of isocortex [layer iv]
internal granule cell layer of neocortex
lamina granularis interna isocorticis [lamina iv]
internal pyramidal cell layer of neocortex
internal pyramidal layer of isocortex [layer v]
isocortex, infragranular pyramidal layer
lamina pyramidalis interna isocorticis [lamina v]
lamina multiformis isocorticis [lamina vi]
Mammalia neocortex L4 Stellate +Glu projection neuron (implies Spiny)
Mammalia CTX L4 Stellate +Glu projection neuron (implies Sp)
Mammalia neocortex (unionOf L2 L3 L5) Martinotti +Sst +GABA intrinsic neuron (implies (with-axon-in cortical layer I) Tufted +GABAR +GluR -PV -VIP)
Mammalia CTX (unionOf EGL L3 L5) MC +Sst +GABA interneuron (implies (with-axon-in cortical layer I) Tu +GABAR +GluR -PV -VIP)
external granular layer of cerebral cortex
external granular layer of isocortex [layer II]
external granule cell layer of neocortex
lamina granularis externa isocorticis [lamina ii]
external pyramidal cell layer of neocortex
external pyramidal layer of cerebral cortex
external pyramidal layer of isocortex [layer iii]
isocortex, deep supragranular pyramidal layer
lamina pyramidalis externa isocorticis [lamina iii]
layer of medium-sized and large pyramidal cells
lamina molecularis isocorticis [lamina I]
Mammalia neocortex (unionOf L2 L3) Basket +PV +GABA intrinsic neuron (implies +GluR +GABAR)
Mammalia CTX (unionOf EGL L3) BC +PV +GABA interneuron (implies +GluR +GABA-gated anionic channel)
Mammalia neocortex Chandelier +GABA neuron
Mammalia vestibular ganglion +Glu neuron
nucleus nervi oculomotorii, pars medialis
vestibular part of vestibulocochlear ganglion
vestibulocochlear ganglion vestibular component
vestibulocochlear VIII ganglion vestibular component
Mammalia VCo +Glu (projecting-to ventral nucleus of lateral lemniscus) projection neuron (implies (with-axons-in NLX:50884 TZ) +Glycine-gated chloride channel +nAChR +NMDA +AMPA)
Cochlear nucleus (ventral) multipolar T cell
Mammalia VCo +Gly intrinsic neuron (implies +GABA A-gated anionic channel +AMPA)
Cochlear nucleus (ventral) multipolar D cell
Mammalia VCo +Gly interneuron (implies +GABA A-gated anionic channel +AMPA)
Mammalia VCo +Glu (projecting-to LSON POI) projection neuron (implies (with-axons-in MNTB NLX:50884 TZ) +Glycine-gated chloride channel +AMPA)
Cochlear nucleus (ventral) globular bushy cell
Mammalia VCo +Calb2 +HCN1 +PV +Glu (projecting-to MSO) projection neuron (implies (with-axons-in NLX:149264 intermediate acoustic stria ventral nucleus of lateral lemniscus) +AMPA)
Mammalia DCo NLX:153849 +Gly (projecting-to DCo VCo) intrinsic neuron (implies (with-axons-in DCo VCo) +AMPA)
Mammalia DCo NLX:153849 +Gly (projecting-to DCo VCo) interneuron (implies (with-axons-in DCo VCo) +AMPA)
Deepest layer of the dorsal cochlear nucleus
Mammalia DCo cochlear nuclear complex Pyramidal +Excitatory neurotransmitter (projecting-to MGB) projection neuron (implies -Homo sapiens (with-axon-in dorsal acoustic stria) Spiny)
Cochlear nucleus (dorsal) pyramidal neuron
Mammalia DCo cochlear nuclear complex PC +Excitatory neurotransmitter (projecting-to MGB) projection neuron (implies -Human (with-axon-in dorsal acoustic stria) Sp)
Mammalia DCo +Gly (projecting-to inferior colliculus) projection neuron (implies (with-axons-in dorsal acoustic stria inferior colliculus) +Glycine-gated chloride channel)
Mammalia DCo +GABA +Gly intrinsic neuron (implies (with-dendrite-in MoC))
Cochlear nucleus (dorsal) cartwheel cell
Mammalia DCo +GABA +Gly interneuron (implies (with-dendrite-in MoC))
molecular layer of dorsal cochlear nucleus
Mammalia neocortex Bipolar intrinsic neuron (implies +GluR)
Mammalia CTX BP interneuron (implies +GluR)
Mammalia DRG +Glu projection neuron (implies (with-axon-in SpC))
spinal ganglion part of peripheral nervous system
Mammalia SpC ventral horn of spinal cord +ACh motor neuron
Spinal cord ventral horn motor neuron beta
columna grisea anterior medullae spinalis
Mammalia SpC spinal cord lateral horn +ACh motor neuron
Spinal cord intermediate horn motor neuron sympathetic
columna grisea intermedia medullare spinalis
Mammalia SpC ventral horn of spinal cord +Gly intrinsic neuron
Spinal cord ventral horn interneuron Renshaw
Mammalia SpC ventral horn of spinal cord +Gly interneuron
Mammalia MOE +Glu sensory neuron (implies +GABAR)
Mammalia MOE +Glu sensory neuron (implies +GABA-gated anionic channel)
pseudostratified main olfactory epithelium
Mammalia olfactory cortex piriform cortex layer 1 +GABA intrinsic neuron (implies +NMDA +AMPA)
Mammalia olfactory cortex piriform cortex layer 1 +GABA interneuron (implies +NMDA +AMPA)
Mammalia MOE +Glu intrinsic neuron (implies (with-axon-in olfactory bulb main glomerular layer) +NMDA +AMPA)
Olfactory epithelium main supporting cell
Mammalia MOE +Glu interneuron (implies (with-axon-in olfactory bulb main glomerular layer) +NMDA +AMPA)
Mammalia olfactory bulb olfactory bulb mitral cell layer +NLX:157298 +Glu projection neuron (implies (with-axons-in EPL NLX:96 olfactory bulb granule cell layer olfactory cortex) +GABAR +GABA A-gated anionic channel +AMPA +Neurofilament 150kD mRNA)
is an amino acid derivative acting as a specific agonist at the NMDA receptor. - from wikipedia
olfactory bulb main mitral cell body layer
Olfactory bulb main external plexiform layer
Cytoarchitectural part of the olfactory bulb, lying superior to the mitral cell layer and inferior to the glomerular layer. The EPL is mostly neuropil composed almost entirely of mitral and tulfted cell dendrites and granule cell dendrites and their synaptic inputs.
external plexiform layer of the olfactory bulb
Mammalia olfactory bulb hippocampus stratum lacunosum +Glu projection neuron (implies (with-axons-in NLX:63363 olfactory cortex) Tufted +GABAR +GluR)
Olfactory bulb (main) tufted cell (middle)
Mammalia olfactory bulb hippocampus stratum lacunosum +Glu projection neuron (implies (with-axons-in NLX:63363 olfactory cortex) Tu +GABAR +GluR)
Olfactory bulb (main) internal plexiform layer
Lamina of the main olfactory bulb lying deep to the mitral cell layer and superficial to the granule cell layer. (in Shepherd, The Synaptic Organization of the Brain, ed 5, Fig. 5.2, page 167)
Mammalia accessory olfactory bulb olfactory bulb accessory olfactory bulb glomerular layer +DA +GABA intrinsic neuron (implies +NMDA +AMPA +Calcium binding protein)
Olfactory bulb (accessory) glomerular layer cell
Mammalia accessory olfactory bulb olfactory bulb accessory olfactory bulb glomerular layer +DA +GABA interneuron (implies +NMDA +AMPA +Calcium binding protein)
Mammalia olfactory bulb Granule +PV +GABA intrinsic neuron (implies +NMDA +AMPA)
Mammalia olfactory bulb GRAN +PV +GABA interneuron (implies +NMDA +AMPA)
Mammalia olfactory bulb olfactory bulb granule cell layer +GABA intrinsic neuron (implies (with-axon-in olfactory bulb granule cell layer))
Mammalia olfactory bulb olfactory bulb granule cell layer +GABA interneuron (implies (with-axon-in olfactory bulb granule cell layer))
Mammalia cerebellar cortex cerebellum granular layer of cerebellar cortex +Glu neuron (implies (with-axon-in molecular layer of cerebellar cortex) +GluR)
Mammalia cerebellar cortex cerebellum molecular layer of cerebellar cortex Stellate +GABA neuron (implies (with-axon-in molecular layer of cerebellar cortex))
Mammalia cerebellar cortex cerebellum granular layer of cerebellar cortex +Calb2 +Glu intrinsic neuron (implies (with-axon-in granular layer of cerebellar cortex))
Mammalia cerebellar cortex cerebellum granular layer of cerebellar cortex +Calb2 +Glu interneuron (implies (with-axon-in granular layer of cerebellar cortex))
Mammalia cerebellar cortex cerebellum (unionOf Purkinje cell layer of cerebellar cortex granular layer of cerebellar cortex) +Calb2 +GABA +Gly intrinsic neuron (implies (with-dendrite-in granular layer of cerebellar cortex) (with-axon-in granular layer of cerebellar cortex))
Mammalia cerebellar cortex cerebellum (unionOf Purkinje cell layer of cerebellar cortex granular layer of cerebellar cortex) +Calb2 +GABA +Gly interneuron (implies (with-dendrite-in granular layer of cerebellar cortex) (with-axon-in granular layer of cerebellar cortex))
Mammalia DCo +Actin +Calb2 +GluR2 +NLX:69833 +Glu intrinsic neuron (implies +GABA A-gated anionic channel)
Cochlear nucleus (dorsal) unipolar brush cell
Mammalia DCo +Actin +Calb2 +GluR2 +NLX:69833 +Glu interneuron (implies +GABA A-gated anionic channel)
Mammalia striatum +NOS +Sst +GABA intrinsic neuron
Striatum somatostatin positive nitric oxide synthase cell
Mammalia striatum +NOS +Sst +GABA interneuron
Mammalia dentate gyrus of hippocampal formation +Glu projection neuron (implies (with-axon-in CA3))
Hyperpolarization and cyclic-nucleotide gated channel
Anionic cys-loop ligand-gated ion channel
Cationic cys-loop ligand-gated ion channel
Mammalia superior colliculus +Glu (projecting-to LP Pul) projection neuron
Colliculus superior wide field vertical cell
Hypothalamus vasopressin neuroendocrine magnocellular neuron
Mammalia Hy +Avp +Vasopressin +Vasopressin neuron
Brain Subdivisions based on automated term selection
Mammalia SpC sacral spinal cord +ACh motor neuron
Spinal cord motor neuron parasympathetic
segmenta sacralia medullae spinalis [1-5]
Mammalia facial nucleus nVII +ACh motor projection neuron
Mammalia nIV +ACh motor projection neuron
Mammalia olfactory bulb olfactory bulb main glomerular layer +Cck intrinsic neuron (implies (with-axon-in olfactory bulb main glomerular layer) Tufted +GluR)
Olfactory bulb main tufted cell external
Mammalia olfactory bulb olfactory bulb main glomerular layer +Cck interneuron (implies (with-axon-in olfactory bulb main glomerular layer) Tu +GluR)
Mammalia olfactory bulb olfactory bulb granule cell layer Granule +PV +GABA intrinsic neuron (implies +NMDA +AMPA)
Olfactory bulb (main) adult-born granule cell
Mammalia olfactory bulb olfactory bulb granule cell layer GRAN +PV +GABA interneuron (implies +NMDA +AMPA)
A layer of neuronal synapses in the retina of the eye, bounded by the inner nuclear layer and the outer nuclear layer. It consists of a dense network of synapses between dendrites of horizontal cells from the inner nuclear layer, and photoreceptor cell inner segments from the outer nuclear layer. It is much thinner than the inner plexiform layer, where amacrine cells cells synapse with retinal ganglion cells (adapted from Wikipedia: http://en.wikipedia.org/wiki/Outer_plexiform_layer)
Olfactory bulb (accessory) external plexiform layer
Mammalia (unionOf NLX:12056 olfactory cortex) olfactory cortex (unionOf olfactory cortex layer 2 olfactory cortex layer 3) Pyramidal +Glu (projecting-onto GC (MOB) Mammalia olfactory cortex olfactory cortex layer 3 +Glu intrinsic neuron (implies (with-axons-in endopiriform nucleus NLX:66882))) projection neuron (implies (with-axon-in GC (MOB)) +NMDA +AMPA)
Olfactory cortex superficial pyramidal cell
Mammalia (unionOf NLX:12056 olfactory cortex) olfactory cortex (unionOf olfactory cortex layer 2 olfactory cortex layer 3) PC +Glu (projecting-onto GC (MOB) Mammalia olfactory cortex olfactory cortex layer 3 (with-axons-in NLX:66882 endopiriform nucleus) +Glu intrinsic neuron) projection neuron (implies (with-axon-in GC (MOB)) +NMDA +AMPA)
Mammalia olfactory cortex olfactory cortex layer 3 +Glu intrinsic neuron (implies (with-axons-in NLX:66882 endopiriform nucleus))
Mammalia olfactory cortex olfactory cortex layer 3 +Glu interneuron (implies (with-axons-in NLX:66882 endopiriform nucleus))
Mammalia (unionOf NLX:12056 olfactory cortex) olfactory cortex piriform cortex layer 3 Pyramidal +Glu (projecting-onto GC (MOB) Mammalia olfactory cortex olfactory cortex layer 3 +Glu intrinsic neuron (implies (with-axons-in endopiriform nucleus NLX:66882))) neuron (implies (with-axon-in GC (MOB)) +NMDA +AMPA)
Mammalia (unionOf NLX:12056 olfactory cortex) olfactory cortex piriform cortex layer 3 PC +Glu (projecting-onto GC (MOB) Mammalia olfactory cortex olfactory cortex layer 3 (with-axons-in NLX:66882 endopiriform nucleus) +Glu intrinsic neuron) neuron (implies (with-axon-in GC (MOB)) +NMDA +AMPA)
Mammalia olfactory cortex +GABA intrinsic neuron (implies (with-axon-in olfactory cortex layer 1))
Mammalia olfactory cortex +GABA interneuron (implies (with-axon-in olfactory cortex layer 1))
Mammalia primary olfactory cortex (unionOf NLX:12056 olfactory cortex primary olfactory cortex) olfactory cortex olfactory cortex layer 2 +Doublecortin +Glu neuron (implies (with-axons-in olfactory cortex layer 2 olfactory cortex layer 3) +NMDA +AMPA)
Mammalia olfactory bulb olfactory bulb main glomerular layer +DA +GABA intrinsic neuron
Olfactory bulb (main) periglomerular cell
Mammalia olfactory bulb olfactory bulb main glomerular layer +DA +GABA interneuron
Mammalia CA1 (unionOf CA1 alveus CA1 stratum oriens) Basket +GABA intrinsic neuron
Mammalia CA1 (unionOf CA1 alveus CA1 stratum oriens) BC +GABA interneuron
Mammalia CA2 Basket +PV +GABA intrinsic neuron (implies (with-axons-in CA2 alveus CA2 stratum oriens CA2 stratum radiatum hippocampus alveus pyramidal layer of CA1 pyramidal layer of CA2 pyramidal layer of CA3))
Mammalia CA2 BC +PV +GABA interneuron (implies (with-axons-in CA2 alveus CA2 stratum oriens CA2 stratum radiatum hippocampus alveus pyramidal layer of CA1 pyramidal layer of CA2 pyramidal layer of CA3))
Mammalia CA3 pyramidal layer of CA3 Basket +GABA intrinsic neuron (implies (with-axons-in CA3 alveus pyramidal layer of CA3))
Mammalia CA3 pyramidal layer of CA3 BC +GABA interneuron (implies (with-axons-in CA3 alveus pyramidal layer of CA3))
Mammalia dentate gyrus of hippocampal formation dentate gyrus granule cell layer Basket Pyramidal +GABA intrinsic neuron (implies (with-axon-in dentate gyrus molecular layer))
Mammalia dentate gyrus of hippocampal formation dentate gyrus granule cell layer BC Pyramidal +GABA interneuron (implies (with-axon-in dentate gyrus molecular layer))
Mammalia retina ONL Rod +Glu intrinsic sensory neuron (implies (with-axons-in NLX:152184 OPL))
Mammalia retina ONL Rod +Glu interneuron sensory (implies (with-axons-in NLX:152184 OPL))
Mammalia hypoglossal nucleus +ACh motor projection neuron
Mammalia VCo +Glu (projecting-to superior olivary complex) projection neuron (implies (with-axons-in TZ superior olivary complex) +GABA A-gated anionic channel +Glycine-gated chloride channel +AMPA)
Cochlear nucleus (ventral) spherical bushy cell
Mammalia VCo cochlear nuclear complex neuron
Cochlear nucleus (ventral) multipolar cell
Mammalia accessory olfactory bulb olfactory bulb accessory olfactory bulb mitral cell layer +Glu projection neuron (implies (with-axon-in NLX:152528))
Mammalia CA2 Pyramidal +Glu projection neuron (implies (with-axons-in CA1 alveus CA1 stratum oriens CA1 stratum radiatum CA2 alveus CA2 stratum oriens CA2 stratum radiatum CA3 alveus CA3 stratum oriens CA3 stratum radiatum hippocampus alveus))
Mammalia CA2 PC +Glu projection neuron (implies (with-axons-in CA1 alveus CA1 stratum oriens CA1 stratum radiatum CA2 alveus CA2 stratum oriens CA2 stratum radiatum CA3 alveus CA3 stratum oriens CA3 stratum radiatum hippocampus alveus))
Mammalia accessory olfactory bulb olfactory bulb (unionOf accessory olfactory bulb granule cell layer accessory olfactory bulb mitral cell layer) +GABA intrinsic neuron (implies (with-dendrite-in NLX:152528) +NMDA +AMPA)
Mammalia accessory olfactory bulb olfactory bulb (unionOf accessory olfactory bulb granule cell layer accessory olfactory bulb mitral cell layer) +GABA interneuron (implies (with-dendrite-in NLX:152528) +NMDA +AMPA)
Mammalia Amb +ACh motor projection neuron (implies (with-axons-in esophagus larynx pharynx))
Mammalia basal forebrain +ACh +ACh projection neuron
Mammalia basal forebrain +GABA projection neuron
Mammalia superior colliculus intrinsic neuron
Colliculus superior intrinsic interneuron
Mammalia superior colliculus interneuron
Pedunculopontine nucleus intrinsic neuron
Amb +ACh motor neuron (implies (with-axon-in 10n))
Ambiguous nucleus parasympathetic cardiac neuron
Mammalia PPTg +ACh +ACh projection neuron
Pedunculopontine nucleus cholinergic neuron
Mammalia PPTg +Glu +Glu projection neuron
Pedunculopontine nucleus glutamatergic neuron
Vertebrata nVI (with-axon-in (intersectionOf (with-axons-in MLF ilxtr:Contralateral))) +Calb2 +Glu +aspartate (projecting-to V3) projection neuron
Vertebrata <vertebrates> nVI (with-axon-in (intersectionOf (with-axons-in MLF ilxtr:Contralateral))) +Calb2 +Glu +aspartate (projecting-to V3) projection neuron
nucleus nervi oculomotorii ventrolateralis
nucleus nervi oculomotorii, pars ventralis
ventral nucleus of oculomotor nuclear complex
Pedunculopontine nucleus GABAergic neuron
Mammalia inferior colliculus (projecting-to MGB) projection neuron
Colliculus inferior MGN projecting neuron
medial globus pallidus +PV +GABA projection neuron
Globus pallidus prototypic projection neuron
anterior division of bed nuclei of stria terminalis Bipolar projection neuron (implies Spiny)
Bed nucleus of the stria terminalis bipolar neuron
anterior division of bed nuclei of stria terminalis BP projection neuron (implies Sp)
Hypothalamus oxytocin magnocellular cell
Mammalia neocortex Double bouquet +Calb +GABA neuron
Mammalia neocortex L2 Pyramidal +Glu projection neuron
Mammalia CTX EGL PC +Glu projection neuron
Mammalia neocortex L3 Pyramidal +Glu projection neuron
Mammalia CTX L3 PC +Glu projection neuron
Mammalia neocortex L4 Pyramidal +Glu projection neuron
Mammalia CTX L4 PC +Glu projection neuron
Mammalia neocortex L5 Pyramidal +Glu projection neuron
Mammalia CTX L5 PC +Glu projection neuron
Mammalia neocortex L6 Pyramidal +Glu projection neuron
Mammalia CTX L6 PC +Glu projection neuron
Mammalia neocortex L1 +GABA intrinsic neuron
Mammalia neocortex Neurogliaform +Npy +GABA intrinsic neuron
Mammalia OM +PV +ACh motor projection neuron
Mammalia striatum +ACh +ACh intrinsic neuron
Mammalia striatum Medium spiny +GABA projection neuron (implies Spiny)
Mammalia striatum MSN +GABA projection neuron (implies Sp)
Mammalia striatum +PV +GABA intrinsic neuron
Mammalia striatum +DA +GABA +TH intrinsic neuron
Mammalia striatum +DA +GABA +TH interneuron
Mammalia MNTB +PV +Gly projection neuron (implies (with-axon-in lateral lemniscus))
Trapezoid Body medial nucleus principal neuron
Mammalia dorsal motor nucleus of vagus nerve +ACh motor neuron
Mus musculus neocortex Basket +GABA (intersectionOf +Adcy9 +Cck +Chrm3 +Cnr1 +Cplx2 +Cplx3 +Crh +Edn3 +Hs6st3 +Htr2c +Htr3a +Igf1 +Npy1r +Pde7b +Pnoc +Prok2 +Rgs12 +Syt10 +Tac2 +VIP +Vipr1) +Cck +VIP intrinsic neuron (Huang2017)
Mouse Neocortex Basket +GABA (intersectionOf +Adcy9 +Cck +Chrm3 +Cnr1 +Cplx2 +Cplx3 +Crh +Edn3 +Hs6st3 +Htr2c +Htr3a +Igf1 +Npy1r +Pde7b +Pnoc +Prok2 +Rgs12 +Syt10 +Tac2 +Vip +Vipr1) +CCK +VIP interneuron (Huang2017)
Mus musculus neocortex +GABA (intersectionOf +Adra1b +Calb2 +Cck +Chrm3 +Chrna4 +Chst1 +Cplx2 +Cplx3 +Htr2c +Htr3a +Npy2r +Nrtn +Pde4b +Rgs10 +Rgs16 +Rgs8 +Rspo1 +Syt10 +Unc5a +VIP +Wnt5a ilxtr:similarTo) +Calb2 +VIP (projecting-onto Intrinsic neuron) intrinsic neuron (Huang2017)
Mouse Neocortex +GABA (intersectionOf +Adra1b +Calb2 +Cck +Chrm3 +Chrna4 +Chst1 +Cplx2 +Cplx3 +Htr2c +Htr3a +Npy2r +Nrtn +Pde4b +Rgs10 +Rgs16 +Rgs8 +Rspo1 +Syt10 +Unc5a +Vip +Wnt5a ilxtr:similarTo) +CR +VIP (projecting-onto OnToInter) interneuron (Huang2017)
Mus musculus neocortex Martinotti +GABA (intersectionOf +Adcy2 +Calb2 +Grin3a +Inhbb +Nppc +Pde2a +Rgs6 +Rgs7 +Slc30a3 +Slc39a1-ps +Sst) +Calb2 +Sst intrinsic neuron (Huang2017)
Mouse Neocortex Martinotti +GABA (intersectionOf +Adcy2 +Calb2 +Grin3a +Inhbb +Nppc +Pde2a +Rgs6 +Rgs7 +Sst +Zip1 +Znt3) +CR +SST interneuron (Huang2017)
Mus musculus neocortex Basket +GABA (intersectionOf +Adcy1 +Adcy8 +Adm +Arhgef10 +Cckbr +Cox6c +Esrrg +Gabra1 +Gabra4 +Gabrd +Gira1 +Gira4 +Kv3 +Mef2c +Nefh +PV +Pparg +Ppargc1a +Rasl11b +Rgs4 +Rspo2 +Slit2 +Slit3 +Tac1) +PV intrinsic neuron (Huang2017)
Mouse Neocortex Basket +GABA (intersectionOf +Adcy1 +Adcy8 +Adm +Arhgef10 +Cckbr +Cox6c +Esrrg +GluA1 +GluA4 +Kv3 +Mef2c +Nefh +PGC1α +Pparg +Pvalb +Rasl11b +Rgs4 +Rspn +Slit2 +Slit3 +Tac1 +α1GABAaR +α4GABAaR +δGABAaR) +PV interneuron (Huang2017)
Mus musculus neocortex Chandelier +GABA (intersectionOf +Cckbr +Fgf9 +Gabra1 +Gabra4 +Gabrd +Gira1 +Gira4 +Gucy1a1 +Gucy1b1 +Hs3st4 +Kcnmb2 +Kv3 +Pde11a +Pde5a +Prkg1 +Pthlh +Tgfb3 +Trpc5 +Unc5b ilxtr:LowerExpression) +Nkx2.1-CreER intrinsic neuron (Huang2017)
Mouse Neocortex Chandelier +GABA (intersectionOf +Cckbr +Fgf9 +GluA1 +GluA4 +Gucy1a3 +Gucy1b3 +Hs3st4 +Kcnmb2 +Kv3 +Pde11a +Pde5a +Prkg1 +Pthlh +Tgfb3 +Trpc5 +Unc5b +α1GABAaR +α4GABAaR +δGABAaR Lower) +Nkx2_1 interneuron (Huang2017)
Mus musculus neocortex +GABA (intersectionOf +Calca +Chrm2 +Cort +Gpr88 +Gucy1a1 +Gucy1b1 +Hcrtr1 +Kcnmb4 +Nos1 +Opn3 +Oxtr +Pde1a +Penk +Prkg2 +Ptn +Rln1 +Slc7a3 +Sst +Syt4 +Syt5 +Syt6 +Tacr1 +Trpc6 +Unc5d +Wnt2) +Sst +Nos1 projection neuron (Huang2017)
Mouse Neocortex +GABA (intersectionOf +Calca +Chrm2 +Cort +Gpr88 +Gucy1a3 +Gucy1b3 +Hcrtr1 +Kcnmb4 +Nos1 +Opn3 +Oxtr +Pde1a +Penk +Prkg2 +Ptn +Rln1 +Slc7a3 +Sst +Syt4 +Syt5 +Syt6 +Tacr1 +Trpc6 +Unc5d +Wnt2) +SST +NOS1 projection neuron (Huang2017)
Mus musculus neocortex +GABA +Nkx2.1-CreER neuron (Huang2017)
Mouse Neocortex +GABA +Nkx2_1 neuron (Huang2017)
Mus musculus neocortex +GABA +Calb2 neuron (Huang2017)
Mouse Neocortex +GABA +Calb2 neuron (Huang2017)
Mus musculus neocortex +GABA +Htr3a neuron (Huang2017)
Mouse Neocortex +GABA +Htr3a neuron (Huang2017)
Mus musculus neocortex +GABA +Nos1 neuron (Huang2017)
Mouse Neocortex +GABA +Nos1 neuron (Huang2017)
Mus musculus neocortex +GABA +Calb2 +Cck +VIP neuron (Huang2017)
Mouse Neocortex +GABA +Calb2 +Cck +Vip neuron (Huang2017)
Mus musculus neocortex +GABA +Calb2 +Sst neuron (Huang2017)
Mouse Neocortex +GABA +Calb2 +Sst neuron (Huang2017)
Mus musculus neocortex +GABA +Calb2 +VIP neuron (Huang2017)
Mouse Neocortex +GABA +Calb2 +Vip neuron (Huang2017)
Mus musculus neocortex +GABA +Cck +VIP neuron (Huang2017)
Mouse Neocortex +GABA +Cck +Vip neuron (Huang2017)
Mus musculus neocortex +GABA +Cck neuron (Huang2017)
Mouse Neocortex +GABA +Cck neuron (Huang2017)
Mus musculus neocortex +GABA +PV neuron (Huang2017)
Mouse Neocortex +GABA +Pvalb neuron (Huang2017)
Mus musculus neocortex +GABA +Sst neuron (Huang2017)
Mouse Neocortex +GABA +Sst neuron (Huang2017)
Mus musculus neocortex +GABA +VIP neuron (Huang2017)
Mouse Neocortex +GABA +Vip neuron (Huang2017)
Rattus norvegicus S1 Large basket (intersectionOf AC b) Fast spiking +GABA +Calb +Calb2 +Npy +PV +VIP -Sst intrinsic neuron (Markram2015)
Rat S1 LBC FS bAC +GABA +CB +CR +NPY +PV +VIP -SST interneuron (Markram2015)
growth hormone release-inhibiting factor
vasoactive intestinal polypeptides precursor
Rattus norvegicus S1 Large basket (intersectionOf AC c) Fast spiking +GABA +Calb +Calb2 +Npy +PV +VIP -Sst intrinsic neuron (Markram2015)
Rat S1 LBC FS cAC +GABA +CB +CR +NPY +PV +VIP -SST interneuron (Markram2015)
Rattus norvegicus S1 Large basket (intersectionOf IR c) Fast spiking +GABA +Calb +Calb2 +Npy +PV +VIP -Sst intrinsic neuron (Markram2015)
Rat S1 LBC FS cIR +GABA +CB +CR +NPY +PV +VIP -SST interneuron (Markram2015)
Rattus norvegicus S1 Large basket (intersectionOf NAC c) Fast spiking +GABA +Calb +Calb2 +Npy +PV +VIP -Sst intrinsic neuron (Markram2015)
Rat S1 LBC FS cNAC +GABA +CB +CR +NPY +PV +VIP -SST interneuron (Markram2015)
Rattus norvegicus S1 Large basket (intersectionOf NAC d) Fast spiking +GABA +Calb +Calb2 +Npy +PV +VIP -Sst intrinsic neuron (Markram2015)
Rat S1 LBC FS dNAC +GABA +CB +CR +NPY +PV +VIP -SST interneuron (Markram2015)
Rattus norvegicus S1 Large basket (intersectionOf STUT d) Fast spiking +GABA +Calb +Calb2 +Npy +PV +VIP -Sst intrinsic neuron (Markram2015)
Rat S1 LBC FS dSTUT +GABA +CB +CR +NPY +PV +VIP -SST interneuron (Markram2015)
Rattus norvegicus S1 Nest basket (intersectionOf AC b) Fast spiking +GABA +Calb +Calb2 +Npy +PV +VIP -Sst intrinsic neuron (Markram2015)
Rat S1 NBC FS bAC +GABA +CB +CR +NPY +PV +VIP -SST interneuron (Markram2015)
Rattus norvegicus S1 Nest basket (intersectionOf IR b) Fast spiking +GABA +Calb +Calb2 +Npy +PV +VIP -Sst intrinsic neuron (Markram2015)
Rat S1 NBC FS bIR +GABA +CB +CR +NPY +PV +VIP -SST interneuron (Markram2015)
Rattus norvegicus S1 Nest basket (intersectionOf STUT b) Fast spiking +GABA +Calb +Calb2 +Npy +PV +VIP -Sst intrinsic neuron (Markram2015)
Rat S1 NBC FS bSTUT +GABA +CB +CR +NPY +PV +VIP -SST interneuron (Markram2015)
Rattus norvegicus S1 Nest basket (intersectionOf AC c) Fast spiking +GABA +Calb +Calb2 +Npy +PV +VIP -Sst intrinsic neuron (Markram2015)
Rat S1 NBC FS cAC +GABA +CB +CR +NPY +PV +VIP -SST interneuron (Markram2015)
Rattus norvegicus S1 Nest basket (intersectionOf IR c) Fast spiking +GABA +Calb +Calb2 +Npy +PV +VIP -Sst intrinsic neuron (Markram2015)
Rat S1 NBC FS cIR +GABA +CB +CR +NPY +PV +VIP -SST interneuron (Markram2015)
Rattus norvegicus S1 Nest basket (intersectionOf NAC c) Fast spiking +GABA +Calb +Calb2 +Npy +PV +VIP -Sst intrinsic neuron (Markram2015)
Rat S1 NBC FS cNAC +GABA +CB +CR +NPY +PV +VIP -SST interneuron (Markram2015)
Rattus norvegicus S1 Nest basket (intersectionOf STUT c) Fast spiking +GABA +Calb +Calb2 +Npy +PV +VIP -Sst intrinsic neuron (Markram2015)
Rat S1 NBC FS cSTUT +GABA +CB +CR +NPY +PV +VIP -SST interneuron (Markram2015)
Rattus norvegicus S1 Nest basket (intersectionOf STUT d) Fast spiking +GABA +Calb +Calb2 +Npy +PV +VIP -Sst intrinsic neuron (Markram2015)
Rat S1 NBC FS dSTUT +GABA +CB +CR +NPY +PV +VIP -SST interneuron (Markram2015)
Rattus norvegicus S1 Small basket (intersectionOf NAC b) Fast spiking +GABA +Calb +Npy +Sst +VIP -Calb2 -PV intrinsic neuron (Markram2015)
Rat S1 SBC FS bNAC +GABA +CB +NPY +SOM +VIP -CR -PV interneuron (Markram2015)
Rattus norvegicus S1 Small basket (intersectionOf AC c) Fast spiking +GABA +Calb +Npy +Sst +VIP -Calb2 -PV intrinsic neuron (Markram2015)
Rat S1 SBC FS cAC +GABA +CB +NPY +SOM +VIP -CR -PV interneuron (Markram2015)
Rattus norvegicus S1 Small basket (intersectionOf NAC d) Fast spiking +GABA +Calb +Npy +Sst +VIP -Calb2 -PV intrinsic neuron (Markram2015)
Rat S1 SBC FS dNAC +GABA +CB +NPY +SOM +VIP -CR -PV interneuron (Markram2015)
Rattus norvegicus S1 Chandelier (intersectionOf AC c) Fast spiking +GABA +Calb -Calb2 -Npy -PV -Sst -VIP intrinsic neuron (Markram2015)
Rat S1 ChC FS cAC +GABA +CB -CR -NPY -PV -SST -VIP interneuron (Markram2015)
Rattus norvegicus S1 Chandelier (intersectionOf NAC c) Fast spiking +GABA +Calb -Calb2 -Npy -PV -Sst -VIP intrinsic neuron (Markram2015)
Rat S1 ChC FS cNAC +GABA +CB -CR -NPY -PV -SST -VIP interneuron (Markram2015)
Rattus norvegicus S1 Chandelier (intersectionOf NAC d) Fast spiking +GABA +Calb -Calb2 -Npy -PV -Sst -VIP intrinsic neuron (Markram2015)
Rat S1 ChC FS dNAC +GABA +CB -CR -NPY -PV -SST -VIP interneuron (Markram2015)
Rattus norvegicus S1 Bitufted (intersectionOf AC b) Regular spiking non pyramidal +GABA +Calb +Calb2 +Npy +Sst +VIP -PV intrinsic neuron (Markram2015)
Rat S1 BTC RSNP bAC +GABA +CB +CR +NPY +SOM +VIP -PV interneuron (Markram2015)
Rattus norvegicus S1 Bitufted (intersectionOf AC c) Regular spiking non pyramidal +GABA +Calb +Calb2 +Npy +Sst +VIP -PV intrinsic neuron (Markram2015)
Rat S1 BTC RSNP cAC +GABA +CB +CR +NPY +SOM +VIP -PV interneuron (Markram2015)
Rattus norvegicus S1 Bitufted (intersectionOf NAC c) Regular spiking non pyramidal +GABA +Calb +Calb2 +Npy +Sst +VIP -PV intrinsic neuron (Markram2015)
Rat S1 BTC RSNP cNAC +GABA +CB +CR +NPY +SOM +VIP -PV interneuron (Markram2015)
Rattus norvegicus S1 Double bouquet (intersectionOf AC b) Regular spiking non pyramidal +GABA +Calb +Calb2 +Sst +VIP -Npy -PV intrinsic neuron (Markram2015)
Rat S1 DBC RSNP bAC +GABA +CB +CR +SOM +VIP -NPY -PV interneuron (Markram2015)
Rattus norvegicus S1 Double bouquet (intersectionOf IR b) Regular spiking non pyramidal +GABA +Calb +Calb2 +Sst +VIP -Npy -PV intrinsic neuron (Markram2015)
Rat S1 DBC RSNP bIR +GABA +CB +CR +SOM +VIP -NPY -PV interneuron (Markram2015)
Rattus norvegicus S1 Double bouquet (intersectionOf NAC b) Regular spiking non pyramidal +GABA +Calb +Calb2 +Sst +VIP -Npy -PV intrinsic neuron (Markram2015)
Rat S1 DBC RSNP bNAC +GABA +CB +CR +SOM +VIP -NPY -PV interneuron (Markram2015)
Rattus norvegicus S1 Double bouquet (intersectionOf STUT b) Regular spiking non pyramidal +GABA +Calb +Calb2 +Sst +VIP -Npy -PV intrinsic neuron (Markram2015)
Rat S1 DBC RSNP bSTUT +GABA +CB +CR +SOM +VIP -NPY -PV interneuron (Markram2015)
Rattus norvegicus S1 Double bouquet (intersectionOf AC c) Regular spiking non pyramidal +GABA +Calb +Calb2 +Sst +VIP -Npy -PV intrinsic neuron (Markram2015)
Rat S1 DBC RSNP cAC +GABA +CB +CR +SOM +VIP -NPY -PV interneuron (Markram2015)
Rattus norvegicus S1 Double bouquet (intersectionOf IR c) Regular spiking non pyramidal +GABA +Calb +Calb2 +Sst +VIP -Npy -PV intrinsic neuron (Markram2015)
Rat S1 DBC RSNP cIR +GABA +CB +CR +SOM +VIP -NPY -PV interneuron (Markram2015)
Rattus norvegicus S1 Double bouquet (intersectionOf NAC c) Regular spiking non pyramidal +GABA +Calb +Calb2 +Sst +VIP -Npy -PV intrinsic neuron (Markram2015)
Rat S1 DBC RSNP cNAC +GABA +CB +CR +SOM +VIP -NPY -PV interneuron (Markram2015)
Rattus norvegicus S1 Martinotti (intersectionOf AC b) Regular spiking non pyramidal +GABA +Calb +Npy +Sst -Calb2 -PV -VIP intrinsic neuron (Markram2015)
Rat S1 MC RSNP bAC +GABA +CB +NPY +SOM -CR -PV -VIP interneuron (Markram2015)
Rattus norvegicus S1 Martinotti (intersectionOf IR b) Regular spiking non pyramidal +GABA +Calb +Npy +Sst -Calb2 -PV -VIP intrinsic neuron (Markram2015)
Rat S1 MC RSNP bIR +GABA +CB +NPY +SOM -CR -PV -VIP interneuron (Markram2015)
Rattus norvegicus S1 Martinotti (intersectionOf STUT b) Regular spiking non pyramidal +GABA +Calb +Npy +Sst -Calb2 -PV -VIP intrinsic neuron (Markram2015)
Rat S1 MC RSNP bSTUT +GABA +CB +NPY +SOM -CR -PV -VIP interneuron (Markram2015)
Rattus norvegicus S1 Martinotti (intersectionOf AC c) Regular spiking non pyramidal +GABA +Calb +Npy +Sst -Calb2 -PV -VIP intrinsic neuron (Markram2015)
Rat S1 MC RSNP cAC +GABA +CB +NPY +SOM -CR -PV -VIP interneuron (Markram2015)
Rattus norvegicus S1 Martinotti (intersectionOf NAC c) Regular spiking non pyramidal +GABA +Calb +Npy +Sst -Calb2 -PV -VIP intrinsic neuron (Markram2015)
Rat S1 MC RSNP cNAC +GABA +CB +NPY +SOM -CR -PV -VIP interneuron (Markram2015)
Rattus norvegicus S1 Martinotti (intersectionOf STUT c) Regular spiking non pyramidal +GABA +Calb +Npy +Sst -Calb2 -PV -VIP intrinsic neuron (Markram2015)
Rat S1 MC RSNP cSTUT +GABA +CB +NPY +SOM -CR -PV -VIP interneuron (Markram2015)
Rattus norvegicus S1 Martinotti (intersectionOf NAC d) Regular spiking non pyramidal +GABA +Calb +Npy +Sst -Calb2 -PV -VIP intrinsic neuron (Markram2015)
Rat S1 MC RSNP dNAC +GABA +CB +NPY +SOM -CR -PV -VIP interneuron (Markram2015)
Rattus norvegicus S1 Bipolar (intersectionOf AC b) Regular spiking non pyramidal +GABA +Calb2 +Sst +VIP -Calb -Npy -PV intrinsic neuron (Markram2015)
Rat S1 BP RSNP bAC +GABA +CR +SOM +VIP -NPY -PV -calbindin interneuron (Markram2015)
Rattus norvegicus S1 Bipolar (intersectionOf IR b) Regular spiking non pyramidal +GABA +Calb2 +Sst +VIP -Calb -Npy -PV intrinsic neuron (Markram2015)
Rat S1 BP RSNP bIR +GABA +CR +SOM +VIP -NPY -PV -calbindin interneuron (Markram2015)
Rattus norvegicus S1 Bipolar (intersectionOf NAC b) Regular spiking non pyramidal +GABA +Calb2 +Sst +VIP -Calb -Npy -PV intrinsic neuron (Markram2015)
Rat S1 BP RSNP bNAC +GABA +CR +SOM +VIP -NPY -PV -calbindin interneuron (Markram2015)
Rattus norvegicus S1 Bipolar (intersectionOf AC c) Regular spiking non pyramidal +GABA +Calb2 +Sst +VIP -Calb -Npy -PV intrinsic neuron (Markram2015)
Rat S1 BP RSNP cAC +GABA +CR +SOM +VIP -NPY -PV -calbindin interneuron (Markram2015)
Rattus norvegicus S1 Bipolar (intersectionOf NAC c) Regular spiking non pyramidal +GABA +Calb2 +Sst +VIP -Calb -Npy -PV intrinsic neuron (Markram2015)
Rat S1 BP RSNP cNAC +GABA +CR +SOM +VIP -NPY -PV -calbindin interneuron (Markram2015)
Rattus norvegicus S1 Bipolar (intersectionOf STUT d) Regular spiking non pyramidal +GABA +Calb2 +Sst +VIP -Calb -Npy -PV intrinsic neuron (Markram2015)
Rat S1 BP RSNP dSTUT +GABA +CR +SOM +VIP -NPY -PV -calbindin interneuron (Markram2015)
Rattus norvegicus S1 Neurogliaform (intersectionOf NAC b) -Fast spiking +GABA +Npy -Calb -Calb2 -PV -Sst -VIP intrinsic neuron (Markram2015)
Rat S1 NGC -Fast spiking bNAC +GABA +NPY -CR -PV -SST -VIP -calbindin interneuron (Markram2015)
Rattus norvegicus S1 Neurogliaform (intersectionOf AC c) -Fast spiking +GABA +Npy -Calb -Calb2 -PV -Sst -VIP intrinsic neuron (Markram2015)
Rat S1 NGC -Fast spiking cAC +GABA +NPY -CR -PV -SST -VIP -calbindin interneuron (Markram2015)
Rattus norvegicus S1 Neurogliaform (intersectionOf NAC c) -Fast spiking +GABA +Npy -Calb -Calb2 -PV -Sst -VIP intrinsic neuron (Markram2015)
Rat S1 NGC -Fast spiking cNAC +GABA +NPY -CR -PV -SST -VIP -calbindin interneuron (Markram2015)
Rattus norvegicus S1 Neurogliaform (intersectionOf STUT c) -Fast spiking +GABA +Npy -Calb -Calb2 -PV -Sst -VIP intrinsic neuron (Markram2015)
Rat S1 NGC -Fast spiking cSTUT +GABA +NPY -CR -PV -SST -VIP -calbindin interneuron (Markram2015)
Rattus norvegicus S1 Bipolar +GABA intrinsic neuron (Markram2015) (implies +Calb2 +Sst +VIP -Calb -Npy -PV)
Rat S1 BP +GABA interneuron (Markram2015) (implies +CR +SOM +VIP -CB -NPY -PV)
Rattus norvegicus S1 Bitufted +GABA intrinsic neuron (Markram2015) (implies +Calb +Calb2 +Npy +Sst +VIP -PV)
Rat S1 BTC +GABA interneuron (Markram2015) (implies +CB +CR +NPY +SOM +VIP -PV)
Rattus norvegicus S1 Chandelier +GABA intrinsic neuron (Markram2015) (implies +Calb -Calb2 -Npy -PV -Sst -VIP)
Rat S1 ChC +GABA interneuron (Markram2015) (implies +CB -CR -NPY -PV -SOM -VIP)
Rattus norvegicus S1 Double bouquet +GABA intrinsic neuron (Markram2015) (implies +Calb +Calb2 +Sst +VIP -Npy -PV)
Rat S1 DBC +GABA interneuron (Markram2015) (implies +CB +CR +SOM +VIP -NPY -PV)
Rattus norvegicus S1 Large basket +GABA intrinsic neuron (Markram2015) (implies +Calb +Calb2 +Npy +PV +VIP -Sst)
Rat S1 LBC +GABA interneuron (Markram2015) (implies +CB +CR +NPY +PV +VIP -SOM)
Rattus norvegicus S1 Martinotti +GABA intrinsic neuron (Markram2015) (implies +Calb +Npy +Sst -Calb2 -PV -VIP)
Rat S1 MC +GABA interneuron (Markram2015) (implies +CB +NPY +SOM -CR -PV -VIP)
Rattus norvegicus S1 Nest basket +GABA intrinsic neuron (Markram2015) (implies +Calb +Calb2 +Npy +PV +VIP -Sst)
Rat S1 NBC +GABA interneuron (Markram2015) (implies +CB +CR +NPY +PV +VIP -SOM)
Rattus norvegicus S1 Neurogliaform +GABA intrinsic neuron (Markram2015) (implies +Npy -Calb -Calb2 -PV -Sst -VIP)
Rat S1 NGC +GABA interneuron (Markram2015) (implies +NPY -CB -CR -PV -SOM -VIP)
Rattus norvegicus S1 Small basket +GABA intrinsic neuron (Markram2015) (implies +Calb +Npy +Sst +VIP -Calb2 -PV)
Rat S1 SBC +GABA interneuron (Markram2015) (implies +CB +NPY +SOM +VIP -CR -PV)
Rattus norvegicus S1 +GABA intrinsic neuron
Mus musculus female right cerebral hemisphere VISp6a Apical dendrite Spiny +Nos1 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a Apical dendrite Spiny +Nos1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Nos1 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Nos1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm5 Apical dendrite Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm5 Apical dendrite Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl4 Apical dendrite Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl4 Apical dendrite Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 Apical dendrite Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 Apical dendrite Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 Apical dendrite Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 Apical dendrite Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a Apical dendrite Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a Apical dendrite Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a Apical dendrite Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a Apical dendrite Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm6a Apical dendrite Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm6a Apical dendrite Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISal2_3 Apical dendrite Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISal2_3 Apical dendrite Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISam2_3 Apical dendrite Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISam2_3 Apical dendrite Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 Apical dendrite Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 Apical dendrite Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 Apical dendrite Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 Apical dendrite Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISa4 Apical dendrite Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISa4 Apical dendrite Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISrl4 Apical dendrite Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISrl4 Apical dendrite Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISa4 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISa4 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm5 Apical dendrite Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm5 Apical dendrite Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 Apical dendrite Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 Apical dendrite Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 Apical dendrite Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 Apical dendrite Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISam4 Apical dendrite Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISam4 Apical dendrite Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm5 Apical dendrite Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm5 Apical dendrite Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 Apical dendrite Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 Apical dendrite Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 Apical dendrite Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 Apical dendrite Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere SSp-bfd5 Apical dendrite Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere SSp-bfd5 Apical dendrite Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere SSp-tr4 Apical dendrite Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere SSp-tr4 Apical dendrite Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere SSp-un5 Apical dendrite Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere SSp-un5 Apical dendrite Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere SSp-n4 -Apical dendrite Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere SSp-n4 -Apical dendrite Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere SSp-bfd4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere SSp-bfd4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere SSp-bfd5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere SSp-bfd5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere SSp-tr4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere SSp-tr4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISa5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISa5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a Apical dendrite Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a Apical dendrite Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpl2_3 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpl2_3 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm5 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm5 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl4 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl4 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpl4 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpl4 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpl5 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpl5 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere RSPagl2_3 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere RSPagl2_3 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpor5 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpor5 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm4 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm4 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere AUDpo5 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere AUDpo5 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpor6a (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpor6a (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a Apical dendrite Spiny +Penk +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a Apical dendrite Spiny +Penk-IRES2-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Penk +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Penk-IRES2-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl6a Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl6a Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl6b Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl6b Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere RSPd6a Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere RSPd6a Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere RSPd6a Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere RSPd6a Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6b Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6b Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6b Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6b Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpl6b Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpl6b Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpl6b Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpl6b Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6b (intersectionOf Apical dendrite truncated) Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6b (intersectionOf Apical dendrite truncated) Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpl6b (intersectionOf Apical dendrite truncated) Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpl6b (intersectionOf Apical dendrite truncated) Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a Apical dendrite Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a Apical dendrite Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere RSPagl6a Apical dendrite Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere RSPagl6a Apical dendrite Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6b (intersectionOf Apical dendrite truncated) Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6b (intersectionOf Apical dendrite truncated) Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6b (intersectionOf Apical dendrite truncated) Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6b (intersectionOf Apical dendrite truncated) Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a Apical dendrite Spiny +Esr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a Apical dendrite Spiny +Esr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISal5 Apical dendrite Spiny +Esr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISal5 Apical dendrite Spiny +Esr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 Apical dendrite Spiny +Esr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 Apical dendrite Spiny +Esr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl5 Apical dendrite Spiny +Esr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl5 Apical dendrite Spiny +Esr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Esr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Esr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Esr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Esr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISli5 Apical dendrite Spiny +Esr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISli5 Apical dendrite Spiny +Esr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Esr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Esr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 (intersectionOf Apical dendrite truncated) Spiny +Esr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 (intersectionOf Apical dendrite truncated) Spiny +Esr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Esr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Esr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 Apical dendrite Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 Apical dendrite Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 Apical dendrite Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 Apical dendrite Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a Apical dendrite Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a Apical dendrite Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a Apical dendrite Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a Apical dendrite Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6b Apical dendrite Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6b Apical dendrite Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 Apical dendrite Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 Apical dendrite Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpor6a Apical dendrite Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpor6a Apical dendrite Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl6a (intersectionOf Apical dendrite truncated) Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl6a (intersectionOf Apical dendrite truncated) Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm5 (intersectionOf Apical dendrite truncated) Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm5 (intersectionOf Apical dendrite truncated) Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a Apical dendrite Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a Apical dendrite Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl6a Apical dendrite Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl6a Apical dendrite Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm5 Apical dendrite Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm5 Apical dendrite Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl4 Apical dendrite Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl4 Apical dendrite Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 Apical dendrite Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 Apical dendrite Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 Apical dendrite Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 Apical dendrite Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere RSPd6a (intersectionOf Apical dendrite truncated) Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere RSPd6a (intersectionOf Apical dendrite truncated) Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere RSPagl2_3 -Apical dendrite Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere RSPagl2_3 -Apical dendrite Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 Apical dendrite Spiny +Sim1-Cre_KJ18 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 Apical dendrite Spiny +Sim1-Cre_KJ18 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Sim1-Cre_KJ18 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Sim1-Cre_KJ18 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Sim1-Cre_KJ18 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Sim1-Cre_KJ18 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 (intersectionOf Apical dendrite truncated) Spiny +Sim1-Cre_KJ18 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 (intersectionOf Apical dendrite truncated) Spiny +Sim1-Cre_KJ18 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Sim1-Cre_KJ18 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Sim1-Cre_KJ18 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 Apical dendrite Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 Apical dendrite Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 Apical dendrite Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 Apical dendrite Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpor6a Apical dendrite Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpor6a Apical dendrite Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 (intersectionOf Apical dendrite truncated) Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 (intersectionOf Apical dendrite truncated) Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpor5 (intersectionOf Apical dendrite truncated) Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpor5 (intersectionOf Apical dendrite truncated) Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a Apical dendrite Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a Apical dendrite Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere SSp6b Apical dendrite Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere SSp6b Apical dendrite Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 Apical dendrite Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 Apical dendrite Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm5 Apical dendrite Spiny +Tlx3-Cre_PL56 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm5 Apical dendrite Spiny +Tlx3-Cre_PL56 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl4 Apical dendrite Spiny +Tlx3-Cre_PL56 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl4 Apical dendrite Spiny +Tlx3-Cre_PL56 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere RSPd5 Apical dendrite Spiny +Tlx3-Cre_PL56 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere RSPd5 Apical dendrite Spiny +Tlx3-Cre_PL56 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 Apical dendrite Spiny +Tlx3-Cre_PL56 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 Apical dendrite Spiny +Tlx3-Cre_PL56 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 Apical dendrite Spiny +Tlx3-Cre_PL56 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 Apical dendrite Spiny +Tlx3-Cre_PL56 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Tlx3-Cre_PL56 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 Apical dendrite Spiny +Tlx3-Cre_PL56 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Tlx3-Cre_PL56 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 Apical dendrite Spiny +Tlx3-Cre_PL56 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISli5 Apical dendrite Spiny +Tlx3-Cre_PL56 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISli5 Apical dendrite Spiny +Tlx3-Cre_PL56 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpor4 Apical dendrite Spiny +Tlx3-Cre_PL56 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpor4 Apical dendrite Spiny +Tlx3-Cre_PL56 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpl5 (intersectionOf Apical dendrite truncated) Spiny +Tlx3-Cre_PL56 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpl5 (intersectionOf Apical dendrite truncated) Spiny +Tlx3-Cre_PL56 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 Apical dendrite Spiny +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 Apical dendrite Spiny +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere RSPd2_3 -Apical dendrite (intersectionOf Spiny sparse) +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere RSPd2_3 -Apical dendrite (intersectionOf Spiny sparse) +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl5 -Apical dendrite -Spiny +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl5 -Apical dendrite -Spiny +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpor2_3 -Apical dendrite -Spiny +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpor2_3 -Apical dendrite -Spiny +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpor6a -Apical dendrite -Spiny +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpor6a -Apical dendrite -Spiny +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Nos1 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Nos1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Nos1 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Nos1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +Nos1 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +Nos1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp1 -Apical dendrite -Spiny +Nos1 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp1 -Apical dendrite -Spiny +Nos1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Nos1 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Nos1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Nos1 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Nos1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Nos1 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Nos1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Nos1 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Nos1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISli2_3 -Apical dendrite -Spiny +Nos1 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISli2_3 -Apical dendrite -Spiny +Nos1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6b -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6b -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6b -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6b -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl2_3 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl2_3 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere RSPagl5 -Apical dendrite -Spiny +PV neuron (AllenCT)
Mus musculus female right cerebral hemisphere RSPagl5 -Apical dendrite -Spiny +Pvalb-T2A-CreERT2 neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm2_3 -Apical dendrite (intersectionOf Spiny sparse) +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm2_3 -Apical dendrite (intersectionOf Spiny sparse) +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere AUDp2_3 -Apical dendrite -Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere AUDp2_3 -Apical dendrite -Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISam5 -Apical dendrite -Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISam5 -Apical dendrite -Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm5 -Apical dendrite -Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm5 -Apical dendrite -Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm5 -Apical dendrite -Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm5 -Apical dendrite -Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp1 -Apical dendrite -Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp1 -Apical dendrite -Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 -Apical dendrite (intersectionOf Spiny sparse) +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 -Apical dendrite (intersectionOf Spiny sparse) +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +ACh +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm2_3 -Apical dendrite (intersectionOf Spiny sparse) +ACh +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm2_3 -Apical dendrite (intersectionOf Spiny sparse) +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +ACh +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl6a -Apical dendrite -Spiny +ACh +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl6a -Apical dendrite -Spiny +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere TEa4 -Apical dendrite -Spiny +ACh +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere TEa4 -Apical dendrite -Spiny +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm4 -Apical dendrite -Spiny +ACh +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm4 -Apical dendrite -Spiny +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm5 -Apical dendrite -Spiny +ACh +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm5 -Apical dendrite -Spiny +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere RSPd5 -Apical dendrite -Spiny +ACh +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere RSPd5 -Apical dendrite -Spiny +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +ACh +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +ACh +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere RSPagl5 -Apical dendrite -Spiny +ACh +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere RSPagl5 -Apical dendrite -Spiny +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +ACh +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +ACh +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +ACh +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +ACh +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpor4 -Apical dendrite -Spiny +ACh +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpor4 -Apical dendrite -Spiny +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl6a -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl6a -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl6a -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl6a -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISal5 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISal5 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm6a -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm6a -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6b -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6b -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm4 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm4 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm5 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm5 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl4 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl4 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISal2_3 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISal2_3 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere RSPagl2_3 -Apical dendrite -Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere RSPagl2_3 -Apical dendrite -Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpor6a -Apical dendrite -Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpor6a -Apical dendrite -Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISam1 -Apical dendrite -Spiny +GABA +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISam1 -Apical dendrite -Spiny +Gad2-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp1 -Apical dendrite -Spiny +GABA +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp1 -Apical dendrite -Spiny +Gad2-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp1 -Apical dendrite -Spiny +GABA +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp1 -Apical dendrite -Spiny +Gad2-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm1 -Apical dendrite -Spiny +GABA +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm1 -Apical dendrite -Spiny +Gad2-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm1 -Apical dendrite -Spiny +GABA +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm1 -Apical dendrite -Spiny +Gad2-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +VIP +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +VIP +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl6a -Apical dendrite (intersectionOf Spiny sparse) +VIP +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl6a -Apical dendrite (intersectionOf Spiny sparse) +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl6a -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl6a -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm6a -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm6a -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere RSPd6a -Apical dendrite (intersectionOf Spiny sparse) +VIP +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere RSPd6a -Apical dendrite (intersectionOf Spiny sparse) +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6b -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6b -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm4 -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm4 -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm4 -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm4 -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +VIP +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +VIP +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +VIP +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl2_3 -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl2_3 -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISli2_3 -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISli2_3 -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Sst +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISam4 -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISam4 -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl4 -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl4 -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl5 -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl5 -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Sst +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Sst +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +Sst +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +Sst +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Htr3a +PV +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Pvalb-T2A-Dre +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Htr3a +PV +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Pvalb-T2A-Dre +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere RSPd6a -Apical dendrite -Spiny +Htr3a +PV +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere RSPd6a -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Pvalb-T2A-Dre +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Htr3a +PV +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Pvalb-T2A-Dre +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Htr3a +PV +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Pvalb-T2A-Dre +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Htr3a +PV +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Pvalb-T2A-Dre +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +PV +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Pvalb-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISrl2_3 -Apical dendrite -Spiny +PV +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISrl2_3 -Apical dendrite -Spiny +Pvalb-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpl2_3 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpl2_3 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere RSPagl6a -Apical dendrite (intersectionOf Spiny sparse) +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere RSPagl6a -Apical dendrite (intersectionOf Spiny sparse) +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl2_3 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl2_3 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl2_3 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl2_3 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISal1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISal1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISli2_3 -Apical dendrite (intersectionOf Spiny sparse) +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISli2_3 -Apical dendrite (intersectionOf Spiny sparse) +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +GABA +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +Slc32a1-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +GABA +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +Slc32a1-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere RSPd2_3 -Apical dendrite -Spiny +GABA +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere RSPd2_3 -Apical dendrite -Spiny +Slc32a1-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +GABA +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Slc32a1-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +GABA +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Slc32a1-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +GABA +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Slc32a1-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +GABA +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +Slc32a1-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +GABA +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Slc32a1-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Esr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Esr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp1 -Apical dendrite -Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp1 -Apical dendrite -Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere RSPv5 -Apical dendrite -Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere RSPv5 -Apical dendrite -Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISal2_3 -Apical dendrite -Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISal2_3 -Apical dendrite -Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Gng7-Cre_KH71 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Gng7-Cre_KH71 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl6a -Apical dendrite -Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl6a -Apical dendrite -Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm5 -Apical dendrite -Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm5 -Apical dendrite -Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm5 -Apical dendrite (intersectionOf Spiny sparse) +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm5 -Apical dendrite (intersectionOf Spiny sparse) +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp1 -Apical dendrite -Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp1 -Apical dendrite -Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere RSPagl6a -Apical dendrite -Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere RSPagl6a -Apical dendrite -Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISli5 -Apical dendrite -Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISli5 -Apical dendrite -Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISli5 -Apical dendrite (intersectionOf Spiny sparse) +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISli5 -Apical dendrite (intersectionOf Spiny sparse) +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISli6a -Apical dendrite -Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISli6a -Apical dendrite -Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISal5 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISal5 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm6a -Apical dendrite (intersectionOf Spiny sparse) +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISpm6a -Apical dendrite (intersectionOf Spiny sparse) +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere RSPd6a -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere RSPd6a -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6b -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp6b -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm5 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpm5 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp1 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp1 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISl5 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl5 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl5 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpl5 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISpl5 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISal2_3 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISal2_3 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female left cerebral hemisphere RSPagl2_3 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female left cerebral hemisphere RSPagl2_3 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl2_3 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus female right cerebral hemisphere VISl2_3 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Nos1 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Nos1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Nos1 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Nos1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm4 Apical dendrite Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm4 Apical dendrite Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 Apical dendrite Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 Apical dendrite Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpor5 Apical dendrite Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpor5 Apical dendrite Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 (intersectionOf Apical dendrite truncated) Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 (intersectionOf Apical dendrite truncated) Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a Apical dendrite Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a Apical dendrite Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a Apical dendrite Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a Apical dendrite Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl5 Apical dendrite Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl5 Apical dendrite Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm2_3 Apical dendrite Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm2_3 Apical dendrite Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpl2_3 Apical dendrite Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpl2_3 Apical dendrite Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm4 Apical dendrite Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm4 Apical dendrite Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm4 Apical dendrite Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm4 Apical dendrite Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 Apical dendrite Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 Apical dendrite Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISam2_3 Apical dendrite Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISam2_3 Apical dendrite Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere SSp-tr5 Apical dendrite Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere SSp-tr5 Apical dendrite Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISa4 Apical dendrite Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISa4 Apical dendrite Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm2_3 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm2_3 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm4 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm4 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 (intersectionOf Apical dendrite truncated) Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm4 Apical dendrite Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm4 Apical dendrite Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 Apical dendrite Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 Apical dendrite Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl4 Apical dendrite Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl4 Apical dendrite Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 Apical dendrite Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 Apical dendrite Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpor4 Apical dendrite Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpor4 Apical dendrite Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpor5 Apical dendrite Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpor5 Apical dendrite Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere SSp-bfd2_3 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere SSp-bfd2_3 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere SSp-bfd4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere SSp-bfd4 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISli5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISli5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpor5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpor5 (intersectionOf Apical dendrite truncated) Spiny +Scnn1a-Tg3-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl6a Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl6a Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm5 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm5 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl4 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl4 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl4 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl4 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl5 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl5 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpor4 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpor4 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpor5 Apical dendrite Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpor5 Apical dendrite Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl5 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl5 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpl5 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpl5 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISli4 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISli4 (intersectionOf Apical dendrite truncated) Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a Apical dendrite Spiny +Penk +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a Apical dendrite Spiny +Penk-IRES2-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a Apical dendrite Spiny +Penk +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a Apical dendrite Spiny +Penk-IRES2-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISli6a Apical dendrite Spiny +Penk +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISli6a Apical dendrite Spiny +Penk-IRES2-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Penk +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Penk-IRES2-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere RSPagl6a (intersectionOf Apical dendrite truncated) Spiny +Penk +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere RSPagl6a (intersectionOf Apical dendrite truncated) Spiny +Penk-IRES2-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl6b Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl6b Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6b Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6b Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6b Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6b Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpl6b Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpl6b Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpl6b Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpl6b Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPagl6a Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPagl6a Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISa6b Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISa6b Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISli6b Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISli6b Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISrl6a Apical dendrite Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISrl6a Apical dendrite Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl6a (intersectionOf Apical dendrite truncated) Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl6a (intersectionOf Apical dendrite truncated) Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl6b (intersectionOf Apical dendrite truncated) Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl6b (intersectionOf Apical dendrite truncated) Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6b (intersectionOf Apical dendrite truncated) Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6b (intersectionOf Apical dendrite truncated) Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a Apical dendrite Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a Apical dendrite Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6b Apical dendrite Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6b Apical dendrite Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 Apical dendrite Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 Apical dendrite Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISli5 (intersectionOf Apical dendrite truncated) Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISli5 (intersectionOf Apical dendrite truncated) Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 Apical dendrite Spiny +Slc17a6-IRES-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 Apical dendrite Spiny +Slc17a6-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Slc17a6-IRES-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Slc17a6-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Slc17a6-IRES-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Slc17a6-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpor6a (intersectionOf Apical dendrite truncated) Spiny +GABA +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpor6a (intersectionOf Apical dendrite truncated) Spiny +Slc32a1-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm5 Apical dendrite Spiny +Esr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm5 Apical dendrite Spiny +Esr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 Apical dendrite Spiny +Esr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 Apical dendrite Spiny +Esr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Esr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Esr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Esr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Esr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Esr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Esr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Esr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 Apical dendrite Spiny +Esr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere AUDp6a Apical dendrite Spiny +Esr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere AUDp6a Apical dendrite Spiny +Esr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Esr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Esr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Esr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Esr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpor5 (intersectionOf Apical dendrite truncated) Spiny +Esr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpor5 (intersectionOf Apical dendrite truncated) Spiny +Esr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6b Apical dendrite Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6b Apical dendrite Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm4 Apical dendrite Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm4 Apical dendrite Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere TEa6a Apical dendrite Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere TEa6a Apical dendrite Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPagl5 Apical dendrite Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPagl5 Apical dendrite Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere RSPagl5 Apical dendrite Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere RSPagl5 Apical dendrite Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere RSPd6a (intersectionOf Apical dendrite truncated) Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere RSPd6a (intersectionOf Apical dendrite truncated) Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a Apical dendrite Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a Apical dendrite Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a Apical dendrite Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a Apical dendrite Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpor6b Apical dendrite Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpor6b Apical dendrite Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl6a (intersectionOf Apical dendrite truncated) Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl6a (intersectionOf Apical dendrite truncated) Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm5 Apical dendrite Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm5 Apical dendrite Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl5 Apical dendrite Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl5 Apical dendrite Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 Apical dendrite Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 Apical dendrite Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Rbp4-Cre_KL100 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Rbp4-Cre_KL100 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a Apical dendrite Spiny +Sim1-Cre_KJ18 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a Apical dendrite Spiny +Sim1-Cre_KJ18 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6b Apical dendrite Spiny +Sim1-Cre_KJ18 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6b Apical dendrite Spiny +Sim1-Cre_KJ18 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl4 Apical dendrite Spiny +Sim1-Cre_KJ18 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl4 Apical dendrite Spiny +Sim1-Cre_KJ18 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPd5 Apical dendrite Spiny +Sim1-Cre_KJ18 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPd5 Apical dendrite Spiny +Sim1-Cre_KJ18 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl5 Apical dendrite Spiny +Sim1-Cre_KJ18 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl5 Apical dendrite Spiny +Sim1-Cre_KJ18 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Sim1-Cre_KJ18 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Sim1-Cre_KJ18 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Sim1-Cre_KJ18 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Sim1-Cre_KJ18 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Sim1-Cre_KJ18 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Sim1-Cre_KJ18 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpor5 Apical dendrite Spiny +Sim1-Cre_KJ18 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpor5 Apical dendrite Spiny +Sim1-Cre_KJ18 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpor5 Apical dendrite Spiny +Sim1-Cre_KJ18 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpor5 Apical dendrite Spiny +Sim1-Cre_KJ18 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Sim1-Cre_KJ18 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Sim1-Cre_KJ18 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl5 (intersectionOf Apical dendrite truncated) Spiny +Sim1-Cre_KJ18 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl5 (intersectionOf Apical dendrite truncated) Spiny +Sim1-Cre_KJ18 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Sim1-Cre_KJ18 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Sim1-Cre_KJ18 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpor5 -Apical dendrite Spiny +Sim1-Cre_KJ18 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpor5 -Apical dendrite Spiny +Sim1-Cre_KJ18 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl5 Apical dendrite Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl5 Apical dendrite Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a Apical dendrite Spiny +Glt25d2-Cre_NF107 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a Apical dendrite Spiny +Glt25d2-Cre_NF107 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6b Apical dendrite Spiny +Glt25d2-Cre_NF107 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6b Apical dendrite Spiny +Glt25d2-Cre_NF107 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPv6a Apical dendrite Spiny +Glt25d2-Cre_NF107 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPv6a Apical dendrite Spiny +Glt25d2-Cre_NF107 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPd5 Apical dendrite Spiny +Glt25d2-Cre_NF107 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPd5 Apical dendrite Spiny +Glt25d2-Cre_NF107 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere RSPd5 Apical dendrite Spiny +Glt25d2-Cre_NF107 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere RSPd5 Apical dendrite Spiny +Glt25d2-Cre_NF107 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl5 Apical dendrite Spiny +Glt25d2-Cre_NF107 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl5 Apical dendrite Spiny +Glt25d2-Cre_NF107 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPagl5 Apical dendrite Spiny +Glt25d2-Cre_NF107 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPagl5 Apical dendrite Spiny +Glt25d2-Cre_NF107 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Glt25d2-Cre_NF107 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Glt25d2-Cre_NF107 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere AUDpo5 Apical dendrite Spiny +Glt25d2-Cre_NF107 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere AUDpo5 Apical dendrite Spiny +Glt25d2-Cre_NF107 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Glt25d2-Cre_NF107 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 Apical dendrite Spiny +Glt25d2-Cre_NF107 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Glt25d2-Cre_NF107 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a (intersectionOf Apical dendrite truncated) Spiny +Glt25d2-Cre_NF107 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Glt25d2-Cre_NF107 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Glt25d2-Cre_NF107 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a Apical dendrite Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a Apical dendrite Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6b Apical dendrite Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6b Apical dendrite Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 Apical dendrite Spiny +Tlx3-Cre_PL56 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 Apical dendrite Spiny +Tlx3-Cre_PL56 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Tlx3-Cre_PL56 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 Apical dendrite Spiny +Tlx3-Cre_PL56 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Tlx3-Cre_PL56 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 Apical dendrite Spiny +Tlx3-Cre_PL56 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Tlx3-Cre_PL56 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 Apical dendrite Spiny +Tlx3-Cre_PL56 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpl5 Apical dendrite Spiny +Tlx3-Cre_PL56 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpl5 Apical dendrite Spiny +Tlx3-Cre_PL56 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Tlx3-Cre_PL56 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 (intersectionOf Apical dendrite truncated) Spiny +Tlx3-Cre_PL56 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Tlx3-Cre_PL56 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Tlx3-Cre_PL56 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Tlx3-Cre_PL56 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 (intersectionOf Apical dendrite truncated) Spiny +Tlx3-Cre_PL56 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISli5 (intersectionOf Apical dendrite truncated) Spiny +Tlx3-Cre_PL56 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISli5 (intersectionOf Apical dendrite truncated) Spiny +Tlx3-Cre_PL56 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a Apical dendrite Spiny +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a Apical dendrite Spiny +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl6a -Apical dendrite (intersectionOf Spiny sparse) +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl6a -Apical dendrite (intersectionOf Spiny sparse) +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl6a -Apical dendrite (intersectionOf Spiny sparse) +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl6a -Apical dendrite (intersectionOf Spiny sparse) +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm6a -Apical dendrite (intersectionOf Spiny sparse) +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm6a -Apical dendrite (intersectionOf Spiny sparse) +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPd6a -Apical dendrite -Spiny +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPd6a -Apical dendrite -Spiny +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6b -Apical dendrite -Spiny +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6b -Apical dendrite -Spiny +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6b -Apical dendrite -Spiny +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6b -Apical dendrite -Spiny +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPd2_3 -Apical dendrite -Spiny +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPd2_3 -Apical dendrite -Spiny +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm5 -Apical dendrite (intersectionOf Spiny sparse) +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm5 -Apical dendrite (intersectionOf Spiny sparse) +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISal6a -Apical dendrite -Spiny +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISal6a -Apical dendrite -Spiny +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere RSPagl5 -Apical dendrite (intersectionOf Spiny sparse) +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere RSPagl5 -Apical dendrite (intersectionOf Spiny sparse) +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Sst +Nos1 +CreFlpRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Sst-IRES-FlpO +Nos1-CreERT2 +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Nos1 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Nos1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm6a -Apical dendrite (intersectionOf Spiny sparse) +Nos1 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm6a -Apical dendrite (intersectionOf Spiny sparse) +Nos1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Nos1 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Nos1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Nos1 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Nos1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Nos1 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Nos1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Nos1 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Nos1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl6a -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl6a -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6b -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6b -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6b -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6b -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISam2_3 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISam2_3 -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpor6b -Apical dendrite -Spiny +Nkx2-1-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpor6b -Apical dendrite -Spiny +Nkx2-1-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl6a -Apical dendrite -Spiny +PV neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl6a -Apical dendrite -Spiny +Pvalb-T2A-CreERT2 neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm4 -Apical dendrite -Spiny +Cux2-CreERT2 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm4 -Apical dendrite -Spiny +Cux2-CreERT2 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6b -Apical dendrite (intersectionOf Spiny sparse) +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6b -Apical dendrite (intersectionOf Spiny sparse) +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp1 -Apical dendrite -Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp1 -Apical dendrite -Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite (intersectionOf Spiny sparse) +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite (intersectionOf Spiny sparse) +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite (intersectionOf Spiny sparse) +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite (intersectionOf Spiny sparse) +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl2_3 -Apical dendrite (intersectionOf Spiny sparse) +Oxtr-T2A-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl2_3 -Apical dendrite (intersectionOf Spiny sparse) +Oxtr-T2A-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISal4 -Apical dendrite -Spiny +Nr5a1-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISal4 -Apical dendrite -Spiny +Nr5a1-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +ACh +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISam4 -Apical dendrite -Spiny +ACh +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISam4 -Apical dendrite -Spiny +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl4 -Apical dendrite -Spiny +ACh +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl4 -Apical dendrite -Spiny +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +ACh +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +ACh +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +ACh +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +ACh +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +ACh +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPagl2_3 -Apical dendrite -Spiny +ACh +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPagl2_3 -Apical dendrite -Spiny +Chat-IRES-Cre-neo +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +PV +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm4 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm4 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm4 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm4 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm5 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm5 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl4 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl4 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl5 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl5 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +PV +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISli4 -Apical dendrite -Spiny +PV +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISli4 -Apical dendrite -Spiny +Pvalb-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Scnn1a-Tg2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Scnn1a-Tg2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +GABA +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Gad2-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +GABA +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Gad2-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +GABA +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Gad2-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +GABA +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Gad2-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +GABA +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Gad2-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm1 -Apical dendrite -Spiny +GABA +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm1 -Apical dendrite -Spiny +Gad2-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +VIP +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +VIP +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl6a -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl6a -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl6b -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl6b -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPd6a -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPd6a -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6b -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6b -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISam5 -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISam5 -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +VIP +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +VIP +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISli4 -Apical dendrite -Spiny +VIP +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISli4 -Apical dendrite -Spiny +Vip-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl5 -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl5 -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Sst +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Sst +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +Sst +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite (intersectionOf Spiny sparse) +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpl5 -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpl5 -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpl5 -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpl5 -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpor5 -Apical dendrite -Spiny +Sst +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpor5 -Apical dendrite -Spiny +Sst-IRES-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Chrna2-Cre_OE25 +PV +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Chrna2-Cre_OE25 +Pvalb-T2A-Dre +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Chrna2-Cre_OE25 +PV +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Chrna2-Cre_OE25 +Pvalb-T2A-Dre +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl6a -Apical dendrite -Spiny +Chrna2-Cre_OE25 +PV +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl6a -Apical dendrite -Spiny +Chrna2-Cre_OE25 +Pvalb-T2A-Dre +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm5 -Apical dendrite -Spiny +Chrna2-Cre_OE25 +PV +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm5 -Apical dendrite -Spiny +Chrna2-Cre_OE25 +Pvalb-T2A-Dre +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl5 -Apical dendrite -Spiny +Chrna2-Cre_OE25 +PV +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl5 -Apical dendrite -Spiny +Chrna2-Cre_OE25 +Pvalb-T2A-Dre +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Chrna2-Cre_OE25 +PV +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Chrna2-Cre_OE25 +Pvalb-T2A-Dre +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Htr3a +PV +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Pvalb-T2A-Dre +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6b -Apical dendrite -Spiny +Htr3a +PV +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6b -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Pvalb-T2A-Dre +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm5 -Apical dendrite -Spiny +Htr3a +PV +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm5 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Pvalb-T2A-Dre +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Htr3a +PV +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Pvalb-T2A-Dre +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPagl2_3 -Apical dendrite -Spiny +Htr3a +PV +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere RSPagl2_3 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Pvalb-T2A-Dre +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISli6a -Apical dendrite (intersectionOf Spiny sparse) +Htr3a +PV +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISli6a -Apical dendrite (intersectionOf Spiny sparse) +Htr3a-Cre_NO152 +Pvalb-T2A-Dre +Ai66(RCRL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm5 -Apical dendrite -Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm5 -Apical dendrite -Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl4 -Apical dendrite -Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl4 -Apical dendrite -Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Rorb-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Rorb-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Ctgf-T2A-dgCre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Ctgf-T2A-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm4 -Apical dendrite (intersectionOf Spiny sparse) +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm4 -Apical dendrite (intersectionOf Spiny sparse) +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp1 -Apical dendrite (intersectionOf Spiny sparse) +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp1 -Apical dendrite (intersectionOf Spiny sparse) +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl5 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl5 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl5 -Apical dendrite (intersectionOf Spiny sparse) +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl5 -Apical dendrite (intersectionOf Spiny sparse) +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere RSPagl1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere RSPagl1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl2_3 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl2_3 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISal1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISal1 -Apical dendrite -Spiny +Ndnf-IRES2-dgCre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +GABA +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +Slc32a1-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISal5 -Apical dendrite -Spiny +GABA +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISal5 -Apical dendrite -Spiny +Slc32a1-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl1 -Apical dendrite -Spiny +GABA +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISl1 -Apical dendrite -Spiny +Slc32a1-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm4 -Apical dendrite -Spiny +GABA +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm4 -Apical dendrite -Spiny +Slc32a1-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite (intersectionOf Spiny sparse) +GABA +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite (intersectionOf Spiny sparse) +Slc32a1-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +GABA +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Slc32a1-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +GABA +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Slc32a1-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +GABA +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Slc32a1-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +GABA +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Slc32a1-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +GABA +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Slc32a1-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISal2_3 -Apical dendrite -Spiny +GABA +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISal2_3 -Apical dendrite -Spiny +Slc32a1-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISli2_3 -Apical dendrite -Spiny +GABA +Vipr2-IRES2-Cre +CreFlpRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISli2_3 -Apical dendrite -Spiny +Slc32a1-T2A-FlpO +Vipr2-IRES2-Cre +Ai65(RCFL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6b -Apical dendrite -Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6b -Apical dendrite -Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm6b -Apical dendrite -Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm6b -Apical dendrite -Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISal6b -Apical dendrite -Spiny +Vipr2-IRES2-Cre +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISal6b -Apical dendrite -Spiny +Vipr2-IRES2-Cre +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6b -Apical dendrite -Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6b -Apical dendrite -Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Ntsr1-Cre_GN220 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Ntsr1-Cre_GN220 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite (intersectionOf Spiny sparse) +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite (intersectionOf Spiny sparse) +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm1 -Apical dendrite -Spiny +Chrna2-Cre_OE25 +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm1 -Apical dendrite -Spiny +Chrna2-Cre_OE25 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp6a -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6a -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm2_3 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISal5 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISal5 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6b -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp6b -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm5 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm5 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp1 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp1 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl5 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl5 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp4 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp4 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp5 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp5 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm1 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISpm1 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male right cerebral hemisphere VISp2_3 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISal2_3 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISal2_3 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl2_3 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISl2_3 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISal4 -Apical dendrite -Spiny +Htr3a +CreRFP neuron (AllenCT)
Mus musculus male left cerebral hemisphere VISal4 -Apical dendrite -Spiny +Htr3a-Cre_NO152 +Ai14(RCL-tdT) neuron (AllenCT)
Mammalia inferior colliculus Stellate (projecting-to MGB) projection neuron
Mammalia inferior colliculus Disc (projecting-to MGB) projection neuron
multiply inhering quality of a physical entity
rhodopsin-like G-protein coupled receptor
dorsal gray commissure and the intermediolateral column of T13-L2 spinal cord to major pelvic ganglion via inferior mesenteric nerve plexus via hypogastric nerve
In male Norway rat, rat and rattus norvegicus, the sympathetic pre-ganglionic connection goes from Dorsal gray commissure of first lumbar segment or Dorsal gray commissure of second lumbar segment or Intermediolateral nucleus of first lumbar segment or Intermediolateral nucleus of second lumbar segment or Intermediolateral nucleus of thirteenth thoracic segment to major pelvic ganglion via inferior mesenteric nerve plexus via hypogastric nerve. This connection projects from the Intermediolateral nucleus of first lumbar segment, Intermediolateral nucleus of second lumbar segment, Intermediolateral nucleus of thirteenth thoracic segment, Dorsal gray commissure of first lumbar segment and Dorsal gray commissure of second lumbar segment.
Expert Dr. Janet R Keast suggested adding "intermediolateral nucleus" in the origin.
male Dorsal gray commissure of first lumbar segment Dorsal gray commissure of second lumbar segment Intermediolateral nucleus of first lumbar segment Intermediolateral nucleus of second lumbar segment Intermediolateral nucleus of thirteenth thoracic segment (with-axons-in hypogastric nerve inferior mesenteric nerve plexus) (with-axon-presynaptic-element-in MPG) (projecting-onto neuron type prostate 12) neuron (implies Rattus norvegicus Sympathetic Pre-Ganglionic)
from Dorsal gray commissure of first lumbar segment or Dorsal gray commissure of second lumbar segment or Intermediolateral nucleus of first lumbar segment or Intermediolateral nucleus of second lumbar segment or Intermediolateral nucleus of thirteenth thoracic segment to major pelvic ganglion via inferior mesenteric nerve plexus via hypogastric nerve
major pelvic ganglion to prostate gland smooth muscle via postganglionic sympathetic fiber
In male Norway rat, rat and rattus norvegicus, the sympathetic post-ganglionic connection goes from major pelvic ganglion to prostate gland smooth muscle via postganglionic sympathetic fiber. This connection projects from the major pelvic ganglion.
Expert Dr. Janet R Keast suggested deleting the glandular epithelium as a target of the axon terminals due to lack of strong evidence to prove innervation of this layer.
male MPG (with-axon-in postganglionic sympathetic fiber) (with-axon-presynaptic-element-in prostate gland smooth muscle) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from major pelvic ganglion to prostate gland smooth muscle via postganglionic sympathetic fiber
intermediolateral cell column of L6-S1 spinal cord to major pelvic ganglion via pelvic splanchnic nerve
In male Norway rat, rat and rattus norvegicus, the parasympathetic pre-ganglionic connection goes from Intermediolateral nucleus of first sacral segment or Intermediolateral nucleus of sixth lumbar segment to major pelvic ganglion via pelvic splanchnic nerve. This connection projects from the Intermediolateral nucleus of sixth lumbar segment and Intermediolateral nucleus of first sacral segment.
Expert Dr. Janet R Keast corrected the original term "lateral gray commissure" to "intermediolateral cell nucleus" as they are synonyms and for consistency across different populations in the knowledge base.
male Intermediolateral nucleus of first sacral segment Intermediolateral nucleus of sixth lumbar segment (with-axon-in pelvic splanchnic nerve) (with-axon-presynaptic-element-in MPG) (projecting-onto neuron type prostate 14) neuron (implies Rattus norvegicus Parasympathetic Pre-Ganglionic)
major pelvic ganglion to prostate epithelium via postganglionic parasympathetic fiber
In male Norway rat, rat and rattus norvegicus, the parasympathetic post-ganglionic connection goes from major pelvic ganglion to prostate epithelium via postganglionic parasympathetic fiber. This connection projects from the major pelvic ganglion.
male MPG (with-axon-in postganglionic parasympathetic fiber) (with-axon-presynaptic-element-in prostate epithelium) neuron (implies Rattus norvegicus Parasympathetic Post-Ganglionic)
from major pelvic ganglion to prostate epithelium via postganglionic parasympathetic fiber
intermediolateral column of thoracolumbar T11-L2 spinal cord to pelvic ganglion via superior hypogastric nerve plexus via hypogastric nerve
In male human, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of eleventh thoracic segment or Intermediolateral nucleus of first lumbar segment or Intermediolateral nucleus of second lumbar segment or Intermediolateral nucleus of thirteenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to pelvic ganglion via superior hypogastric nerve plexus via hypogastric nerve. This connection projects from the Intermediolateral nucleus of eleventh thoracic segment, Intermediolateral nucleus of first lumbar segment, Intermediolateral nucleus of second lumbar segment, Intermediolateral nucleus of thirteenth thoracic segment and Intermediolateral nucleus of twelfth thoracic segment.
male Intermediolateral nucleus of eleventh thoracic segment Intermediolateral nucleus of first lumbar segment Intermediolateral nucleus of second lumbar segment Intermediolateral nucleus of thirteenth thoracic segment Intermediolateral nucleus of twelfth thoracic segment (with-axons-in hypogastric nerve superior hypogastric nerve plexus) (with-axon-presynaptic-element-in pelvic ganglion) (projecting-onto neuron type prostate 16) neuron (implies Homo sapiens Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of eleventh thoracic segment or Intermediolateral nucleus of first lumbar segment or Intermediolateral nucleus of second lumbar segment or Intermediolateral nucleus of thirteenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to pelvic ganglion via superior hypogastric nerve plexus via hypogastric nerve
pelvic ganglion to prostate gland smooth muscle via postganglionic sympathetic fiber
In male human, the sympathetic post-ganglionic connection goes from pelvic ganglion to prostate gland smooth muscle via postganglionic sympathetic fiber. This connection projects from the pelvic ganglion.
male pelvic ganglion (with-axon-in postganglionic sympathetic fiber) (with-axon-presynaptic-element-in prostate gland smooth muscle) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from pelvic ganglion to prostate gland smooth muscle via postganglionic sympathetic fiber
intermediolateral cell column of sacral S2-S4 spinal cord to pelvic ganglion via pelvic splanchnic nerve
In male human, the parasympathetic pre-ganglionic connection goes from Intermediolateral nucleus of fourth sacral segment or Intermediolateral nucleus of second sacral segment or Intermediolateral nucleus of third sacral segment to pelvic ganglion via pelvic splanchnic nerve. This connection projects from the Intermediolateral nucleus of second sacral segment, Intermediolateral nucleus of third sacral segment and Intermediolateral nucleus of fourth sacral segment.
male Intermediolateral nucleus of fourth sacral segment Intermediolateral nucleus of second sacral segment Intermediolateral nucleus of third sacral segment (with-axon-in pelvic splanchnic nerve) (with-axon-presynaptic-element-in pelvic ganglion) (projecting-onto neuron type prostate 18) neuron (implies Homo sapiens Parasympathetic Pre-Ganglionic)
from Intermediolateral nucleus of fourth sacral segment or Intermediolateral nucleus of second sacral segment or Intermediolateral nucleus of third sacral segment to pelvic ganglion via pelvic splanchnic nerve
pelvic ganglion to prostate epithelium via postganglionic parasympathetic fiber
In male human, the parasympathetic post-ganglionic connection goes from pelvic ganglion to prostate epithelium via postganglionic parasympathetic fiber. This connection projects from the pelvic ganglion.
male pelvic ganglion (with-axon-in postganglionic parasympathetic fiber) (with-axon-presynaptic-element-in prostate epithelium) neuron (implies Homo sapiens Parasympathetic Post-Ganglionic)
from pelvic ganglion to prostate epithelium via postganglionic parasympathetic fiber
L2-L5 sympathetic chain ganglia to prostate gland smooth muscle via lumbar splanchic nerve via hypogastric nerve via postganglionic sympathetic fiber
In male dog, the sympathetic post-ganglionic connection goes from Fourth lumbar ganglion or Second lumbar ganglion or Third lumbar ganglion or fifth lumbar sympathetic ganglion to prostate gland smooth muscle via lumbar splanchnic nerve via hypogastric nerve via postganglionic sympathetic fiber. This connection projects from the fifth lumbar sympathetic ganglion, Fourth lumbar ganglion, Second lumbar ganglion and Third lumbar ganglion.
16 October 2024 edited NPO-IZ-24-27. After revisiting the original references it was clear it was showing postganglionic populations only. Fast Blue is not transynaptic and populations NPO-IZ-25 and NPO-IZ-27 have been deleted while NPO-IZ-24 and NPO-IZ-26 are the new postganglionic connections that do not have a preganglionic connection linked because we do not know the spinal origins of these connections in dogs.
male L2 sympathetic chain ganglion L3 sympathetic chain ganglion L4 sympathetic chain ganglion L5 sympathetic chain ganglion (with-axons-in hypogastric nerve lumbar splanchnic nerve postganglionic sympathetic fiber) (with-axon-presynaptic-element-in prostate gland smooth muscle) neuron (implies Canis lupus familiaris Sympathetic Post-Ganglionic)
from Fourth lumbar ganglion or Second lumbar ganglion or Third lumbar ganglion or fifth lumbar sympathetic ganglion to prostate gland smooth muscle via lumbar splanchnic nerve via hypogastric nerve via postganglionic sympathetic fiber
Updated to add prostate gland smooth muscle to destination in path builder.
inferior mesenteric ganglion to prostate gland smooth muscle via hypogastric nerve via postganglionic sympathetic fiber
In male dog, the sympathetic post-ganglionic connection goes from inferior mesenteric ganglion to prostate gland smooth muscle via hypogastric nerve via postganglionic sympathetic fiber. This connection projects from the inferior mesenteric ganglion.
male inferior mesenteric ganglion (with-axons-in hypogastric nerve postganglionic sympathetic fiber) (with-axon-presynaptic-element-in prostate gland smooth muscle) neuron (implies Canis lupus familiaris Sympathetic Post-Ganglionic)
from inferior mesenteric ganglion to prostate gland smooth muscle via hypogastric nerve via postganglionic sympathetic fiber
L6-S3 sympathetic chain ganglia to prostate gland smooth muscle via pelvic splanchnic nerve via hypogastric nerve via postganglionic sympathetic fiber
In male dog, the sympathetic post-ganglionic connection goes from First sacral ganglion or S2 sympathetic chain ganglion or S3 sympathetic chain ganglion or sixth lumbar sympathetic ganglion to prostate gland smooth muscle via pelvic splanchnic nerve via hypogastric nerve via postganglionic sympathetic fiber. This connection projects from the First sacral ganglion, sixth lumbar sympathetic ganglion, S2 sympathetic chain ganglion and S3 sympathetic chain ganglion.
male L6 sympathetic chain ganglion S1 sympathetic chain ganglion S2 sympathetic chain ganglion S3 sympathetic chain ganglion (with-axons-in hypogastric nerve pelvic splanchnic nerve postganglionic sympathetic fiber) (with-axon-presynaptic-element-in prostate gland smooth muscle) neuron (implies Canis lupus familiaris Sympathetic Post-Ganglionic)
from First sacral ganglion or S2 sympathetic chain ganglion or S3 sympathetic chain ganglion or sixth lumbar sympathetic ganglion to prostate gland smooth muscle via pelvic splanchnic nerve via hypogastric nerve via postganglionic sympathetic fiber
Updated path builder to include the missing anatomical entities : prostate smooth muscle (using UBERON rather than ILX URI); S2 & S3 sympathetic ganglion (ILX URIS because no UBERON entities exist).
L-Tyrosine, tetrahydrobiopterin:oxygen oxidoreductase (3-hydroxylating)
Mammalia CA3 pyramidal layer of CA3 Pyramidal +Glu projection neuron (implies (with-axons-in CA1 stratum oriens CA1 stratum radiatum CA3 CA3 stratum oriens CA3 stratum radiatum) +GABAR +GluR)
Mammalia CA3 pyramidal layer of CA3 PC +Glu projection neuron (implies (with-axons-in CA1 stratum oriens CA1 stratum radiatum CA3 CA3 stratum oriens CA3 stratum radiatum) +GABAR +GluR)
Mammalia cerebellar cortex cerebellum Purkinje cell layer of cerebellar cortex +GABA projection neuron (implies (with-dendrite-in molecular layer of cerebellar cortex) (with-axons-in Purkinje cell layer of cerebellar cortex cerebellar nuclear complex) Spiny +AMPA +GABAR)
Mammalia cerebellar cortex cerebellum Purkinje cell layer of cerebellar cortex +GABA projection neuron (implies (with-dendrite-in molecular layer of cerebellar cortex) (with-axons-in Purkinje cell layer of cerebellar cortex cerebellar nuclear complex) Sp +AMPA +GABA-gated anionic channel)
Mammalia cerebellar cortex cerebellum molecular layer of cerebellar cortex Basket +GABA intrinsic neuron (implies (with-axon-in Purkinje cell layer of cerebellar cortex))
Mammalia cerebellar cortex cerebellum molecular layer of cerebellar cortex BC +GABA interneuron (implies (with-axon-in Purkinje cell layer of cerebellar cortex))
Mammalia CA1 pyramidal layer of CA1 Pyramidal +Glu projection neuron (implies (with-axons-in entorhinal cortex subiculum) +GABAR +GluR)
Mammalia CA1 pyramidal layer of CA1 PC +Glu projection neuron (implies (with-axons-in entorhinal cortex subiculum) +GABAR +GluR)
Mammalia retina ONL Cone +Glu intrinsic sensory neuron (implies (with-axon-in NLX:152184))
Mammalia retina ONL Cone +Glu interneuron sensory (implies (with-axon-in NLX:152184))
Mammalia SpC ventral horn of spinal cord +ACh +Glu motor projection neuron (implies (with-dendrite-in ventral horn of spinal cord) (with-axon-in ventral horn of spinal cord) +GluR +GABA A-gated anionic channel)
Spinal cord ventral horn motor neuron alpha
Mammalia cerebellar cortex cerebellum granular layer of cerebellar cortex +GABA intrinsic neuron (implies (with-axon-in granular layer of cerebellar cortex))
Mammalia cerebellar cortex cerebellum granular layer of cerebellar cortex +GABA interneuron (implies (with-axon-in granular layer of cerebellar cortex))
Mammalia SpC ventral horn of spinal cord +ACh motor projection neuron (implies (with-dendrite-in ventral horn of spinal cord) (with-axon-in ventral horn of spinal cord) +GluR +GABA A-gated anionic channel)
Spinal cord ventral horn motor neuron gamma
Mammalia spiral organ of cochlea (unionOf cochlea spiral organ of cochlea) cochlea +PRES +Asp +Glu +aspartate projection neuron
intermediolateral cell column of L1-L2 spinal cord to major pelvic ganglion via inferior mesenteric ganglion via hypogastric nerve
In male Norway rat, rat and rattus norvegicus, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of first lumbar segment or Intermediolateral nucleus of second lumbar segment to major pelvic ganglion via inferior mesenteric ganglion via hypogastric nerve. This connection projects from the Intermediolateral nucleus of first lumbar segment and Intermediolateral nucleus of second lumbar segment.
Dr. Janet R Keast added "intermediolateral cell collumn" as the origin.
male Intermediolateral nucleus of first lumbar segment Intermediolateral nucleus of second lumbar segment (with-axons-in hypogastric nerve inferior mesenteric ganglion) (with-axon-presynaptic-element-in MPG) (projecting-onto neuron type semves 2 neuron type semves 2a) neuron (implies Rattus norvegicus Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of first lumbar segment or Intermediolateral nucleus of second lumbar segment to major pelvic ganglion via inferior mesenteric ganglion via hypogastric nerve
please confirm partial order Ilias. thanks!
major pelvic ganglion to seminal vesicle epithelium via first accessory pelvic ganglion via postganglionic sympathetic fiber
In male Norway rat, rat and rattus norvegicus, the sympathetic post-ganglionic connection goes from major pelvic ganglion to seminal vesicle epithelium via first accessory pelvic ganglion via postganglionic sympathetic fiber. This connection projects from the major pelvic ganglion.
The reference for the accessory gland is from: https://doi.org/10.1016/j.autneu.2018.12.005
male MPG (with-axons-in first accessory pelvic ganglion postganglionic sympathetic fiber) (with-axon-presynaptic-element-in seminal vesicle epithelium) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from major pelvic ganglion to seminal vesicle epithelium via first accessory pelvic ganglion via postganglionic sympathetic fiber
major pelvic ganglion to muscular coat of seminal vesicle via first accessory pelvic ganglion via postganglionic sympathetic fiber
In male Norway rat, rat and rattus norvegicus, the sympathetic post-ganglionic connection goes from major pelvic ganglion to muscular coat of seminal vesicle via first accessory pelvic ganglion via postganglionic sympathetic fiber. This connection projects from the major pelvic ganglion.
male MPG (with-axons-in first accessory pelvic ganglion postganglionic sympathetic fiber) (with-axon-presynaptic-element-in muscular coat of seminal vesicle) neuron (implies Rattus norvegicus Sympathetic Post-Ganglionic)
from major pelvic ganglion to muscular coat of seminal vesicle via first accessory pelvic ganglion via postganglionic sympathetic fiber
L6-S1 spinal cord to major pelvic ganglion via pelvic splanchnic nerve
In male Norway rat, rat and rattus norvegicus, the parasympathetic pre-ganglionic connection goes from L6 segment of lumbar spinal cord or S1 segment of sacral spinal cord to major pelvic ganglion via pelvic splanchnic nerve. This connection projects from the L6 segment of lumbar spinal cord and S1 segment of sacral spinal cord.
male L6 S1 segment of sacral spinal cord (with-axon-in pelvic splanchnic nerve) (with-axon-presynaptic-element-in MPG) (projecting-onto neuron type semves 4 neuron type semves 4a) neuron (implies Rattus norvegicus Parasympathetic Pre-Ganglionic)
from L6 segment of lumbar spinal cord or S1 segment of sacral spinal cord to major pelvic ganglion via pelvic splanchnic nerve
major pelvic ganglion to seminal vesicle epithelium via first accessory pelvic ganglion via postganglionic parasympathetic fiber
In male Norway rat, rat and rattus norvegicus, the parasympathetic post-ganglionic connection goes from major pelvic ganglion to seminal vesicle epithelium via first accessory pelvic ganglion via postganglionic parasympathetic fiber. This connection projects from the major pelvic ganglion.
male MPG (with-axons-in first accessory pelvic ganglion postganglionic parasympathetic fiber) (with-axon-presynaptic-element-in seminal vesicle epithelium) neuron (implies Rattus norvegicus Parasympathetic Post-Ganglionic)
from major pelvic ganglion to seminal vesicle epithelium via first accessory pelvic ganglion via postganglionic parasympathetic fiber
major pelvic ganglion to muscular coat of seminal vesicle via first accessory pelvic ganglion via postganglionic parasympathetic fiber
In male Norway rat, rat and rattus norvegicus, the parasympathetic post-ganglionic connection goes from major pelvic ganglion to muscular coat of seminal vesicle via first accessory pelvic ganglion via postganglionic parasympathetic fiber. This connection projects from the major pelvic ganglion.
male MPG (with-axons-in first accessory pelvic ganglion postganglionic parasympathetic fiber) (with-axon-presynaptic-element-in muscular coat of seminal vesicle) neuron (implies Rattus norvegicus Parasympathetic Post-Ganglionic)
from major pelvic ganglion to muscular coat of seminal vesicle via first accessory pelvic ganglion via postganglionic parasympathetic fiber
Thoracolumbar T10-L2 spinal cord to pelvic ganglion via superior hypogastric nerve plexus via hypogastric nerve
In male human, the sympathetic pre-ganglionic connection goes from L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord or Thirteenth thoracic spinal cord segment to pelvic ganglion via superior hypogastric nerve plexus via hypogastric nerve. This connection projects from the L2 segment of lumbar spinal cord, L1 segment of lumbar spinal cord, T10 segment of thoracic spinal cord, T11 segment of thoracic spinal cord, T12 segment of thoracic spinal cord and Thirteenth thoracic spinal cord segment.
Dr. Janet R Keast commented "This statement is correct but could be expanded : “to inferior hypogastric plexus via the superior hypogastric plexus then the hypogastric nerve”".
male L1 segment of lumbar spinal cord L2 segment of lumbar spinal cord T10 segment of thoracic spinal cord T11 segment of thoracic spinal cord T12 segment of thoracic spinal cord T13 segment of thoracic spinal cord (with-axons-in hypogastric nerve superior hypogastric nerve plexus) (with-axon-presynaptic-element-in pelvic ganglion) (projecting-onto neuron type semves 6) neuron (implies Homo sapiens Sympathetic Pre-Ganglionic)
from L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord or Thirteenth thoracic spinal cord segment to pelvic ganglion via superior hypogastric nerve plexus via hypogastric nerve
pelvic ganglion to muscular coat of seminal vesicle via postganglionic sympathetic fiber
In male human, the sympathetic post-ganglionic connection goes from pelvic ganglion to muscular coat of seminal vesicle via postganglionic sympathetic fiber. This connection projects from the pelvic ganglion.
male pelvic ganglion (with-axon-in postganglionic sympathetic fiber) (with-axon-presynaptic-element-in muscular coat of seminal vesicle) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from pelvic ganglion to muscular coat of seminal vesicle via postganglionic sympathetic fiber
Sacral S2-S4 spinal cord to pelvic ganglion via pelvic splanchnic nerves
In male human, the parasympathetic pre-ganglionic connection goes from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to pelvic ganglion via pelvic splanchnic nerve. This connection projects from the S4 segment of sacral spinal cord, S2 segment of sacral spinal cord and S3 segment of sacral spinal cord.
male S2 segment of sacral spinal cord S3 segment of sacral spinal cord S4 segment of sacral spinal cord (with-axon-in pelvic splanchnic nerve) (with-axon-presynaptic-element-in pelvic ganglion) (projecting-onto neuron type semves 8) neuron (implies Homo sapiens Parasympathetic Pre-Ganglionic)
from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to pelvic ganglion via pelvic splanchnic nerve
pelvic ganglion to seminal vesicles via postganglionic parasympathetic fiber
In male human, the parasympathetic post-ganglionic connection goes from pelvic ganglion to seminal vesicle via postganglionic parasympathetic fiber. This connection projects from the pelvic ganglion.
male pelvic ganglion (with-axon-in postganglionic parasympathetic fiber) (with-axon-presynaptic-element-in seminal vesicle) neuron (implies Homo sapiens Parasympathetic Post-Ganglionic)
from pelvic ganglion to seminal vesicle via postganglionic parasympathetic fiber
C5-C7 spinal cord to coracobrachialis muscle via musculocutaneous nerve
In human, the connection goes from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord to coracobrachialis muscle via musculocutaneous nerve. This motor connection projects from the C5 segment of cervical spinal cord, C6 segment of cervical spinal cord and C7 segment of cervical spinal cord.
C5 segment of cervical spinal cord C6 segment of cervical spinal cord C7 segment of cervical spinal cord (with-axon-in musculocutaneous nerve) (with-axon-presynaptic-element-in coracobrachialis muscle) (implies Homo sapiens motor neuron)
from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord to coracobrachialis muscle via musculocutaneous nerve
C5-C7 spinal cord to bicep brachii muscle via musculocutaneous nerve
In human, the connection goes from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord to biceps brachii via musculocutaneous nerve. This motor connection projects from the C5 segment of cervical spinal cord, C6 segment of cervical spinal cord and C7 segment of cervical spinal cord.
C5 segment of cervical spinal cord C6 segment of cervical spinal cord C7 segment of cervical spinal cord (with-axon-in musculocutaneous nerve) (with-axon-presynaptic-element-in biceps brachii) (implies Homo sapiens motor neuron)
from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord to biceps brachii via musculocutaneous nerve
C5-C7 spinal cord to medial portion of the brachialis muscle via musculocutaneous nerve
In human, the connection goes from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord to medial portion of the brachialis muscle via musculocutaneous nerve. This motor connection projects from the C5 segment of cervical spinal cord, C6 segment of cervical spinal cord and C7 segment of cervical spinal cord.
C5 segment of cervical spinal cord C6 segment of cervical spinal cord C7 segment of cervical spinal cord (with-axon-in musculocutaneous nerve) (with-axon-presynaptic-element-in medial portion of the brachialis muscle) (implies Homo sapiens motor neuron)
from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord to medial portion of the brachialis muscle via musculocutaneous nerve
C6-C7 spinal cord to pronator teres muscle via median nerve
In human, the connection goes from C6 segment of cervical spinal cord or C7 segment of cervical spinal cord to pronator teres via median nerve. This motor connection projects from the C6 segment of cervical spinal cord and C7 segment of cervical spinal cord.
C6 segment of cervical spinal cord C7 segment of cervical spinal cord (with-axon-in median nerve) (with-axon-presynaptic-element-in pronator teres) (implies Homo sapiens motor neuron)
from C6 segment of cervical spinal cord or C7 segment of cervical spinal cord to pronator teres via median nerve
C8-T1 spinal cord to flexor digitorum superficialis muscle via median nerve
In human, the connection goes from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to flexor digitorum superficialis via median nerve. This motor connection projects from the C8 segment of cervical spinal cord and T1 segment of thoracic spinal cord.
C8 segment of cervical spinal cord T1 segment of thoracic spinal cord (with-axon-in median nerve) (with-axon-presynaptic-element-in flexor digitorum superficialis) (implies Homo sapiens motor neuron)
from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to flexor digitorum superficialis via median nerve
C7-C8 spinal cord to palmaris longus muscle via median nerve
In human, the connection goes from C7 segment of cervical spinal cord or C8 segment of cervical spinal cord to palmaris longus muscle via median nerve. This motor connection projects from the C7 segment of cervical spinal cord and C8 segment of cervical spinal cord.
C7 segment of cervical spinal cord C8 segment of cervical spinal cord (with-axon-in median nerve) (with-axon-presynaptic-element-in palmaris longus muscle) (implies Homo sapiens motor neuron)
from C7 segment of cervical spinal cord or C8 segment of cervical spinal cord to palmaris longus muscle via median nerve
C6-C7 spinal cord to flexor carpi radialis muscle via median nerve
In human, the connection goes from C6 segment of cervical spinal cord or C7 segment of cervical spinal cord to flexor carpi radialis muscle via median nerve. This motor connection projects from the C6 segment of cervical spinal cord and C7 segment of cervical spinal cord.
C6 segment of cervical spinal cord C7 segment of cervical spinal cord (with-axon-in median nerve) (with-axon-presynaptic-element-in flexor carpi radialis muscle) (implies Homo sapiens motor neuron)
from C6 segment of cervical spinal cord or C7 segment of cervical spinal cord to flexor carpi radialis muscle via median nerve
C8-T1 spinal cord to flexor digitorum profundus muscle via median nerve
In human, the connection goes from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to flexor digitorum profundus via median nerve. This motor connection projects from the C8 segment of cervical spinal cord and T1 segment of thoracic spinal cord.
C8 segment of cervical spinal cord T1 segment of thoracic spinal cord (with-axon-in median nerve) (with-axon-presynaptic-element-in flexor digitorum profundus) (implies Homo sapiens motor neuron)
from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to flexor digitorum profundus via median nerve
C7-C8 spinal cord to flexor pollicis longus muscle via median nerve
In human, the connection goes from C7 segment of cervical spinal cord or C8 segment of cervical spinal cord to flexor pollicis longus muscle via median nerve. This motor connection projects from the C7 segment of cervical spinal cord and C8 segment of cervical spinal cord.
C7 segment of cervical spinal cord C8 segment of cervical spinal cord (with-axon-in median nerve) (with-axon-presynaptic-element-in flexor pollicis longus muscle) (implies Homo sapiens motor neuron)
from C7 segment of cervical spinal cord or C8 segment of cervical spinal cord to flexor pollicis longus muscle via median nerve
C7-C8 spinal cord to pronator quadratus muscle via median nerve
In human, the connection goes from C7 segment of cervical spinal cord or C8 segment of cervical spinal cord to pronator quadratus muscle via median nerve. This motor connection projects from the C7 segment of cervical spinal cord and C8 segment of cervical spinal cord.
C7 segment of cervical spinal cord C8 segment of cervical spinal cord (with-axon-in median nerve) (with-axon-presynaptic-element-in pronator quadratus muscle) (implies Homo sapiens motor neuron)
from C7 segment of cervical spinal cord or C8 segment of cervical spinal cord to pronator quadratus muscle via median nerve
C6-C7 spinal cord to first lumbrical muscle of the hand via median nerve via proper palmar digital branches of the median nerve
In human, the connection goes from C6 segment of cervical spinal cord or C7 segment of cervical spinal cord to first lumbrical muscle of the hand via median nerve via palmar digital nerve. This motor connection projects from the C6 segment of cervical spinal cord and C7 segment of cervical spinal cord.
C6 segment of cervical spinal cord C7 segment of cervical spinal cord (with-axons-in median nerve palmar digital nerve) (with-axon-presynaptic-element-in first lumbrical muscle of the hand) (implies Homo sapiens motor neuron)
from C6 segment of cervical spinal cord or C7 segment of cervical spinal cord to first lumbrical muscle of the hand via median nerve via palmar digital nerve
C6-C7 spinal cord to second lumbrical muscle of the hand via median nerve via the palmar digital nerve
In human, the connection goes from C6 segment of cervical spinal cord or C7 segment of cervical spinal cord to second lumbrical muscle of the hand via median nerve via palmar digital nerve. This motor connection projects from the C6 segment of cervical spinal cord and C7 segment of cervical spinal cord.
C6 segment of cervical spinal cord C7 segment of cervical spinal cord (with-axons-in median nerve palmar digital nerve) (with-axon-presynaptic-element-in second lumbrical muscle of the hand) (implies Homo sapiens motor neuron)
from C6 segment of cervical spinal cord or C7 segment of cervical spinal cord to second lumbrical muscle of the hand via median nerve via palmar digital nerve
C8-T1 spinal cord to abductor pollicis brevis muscle via median nerve via recurrent branch of the median nerve
In human, the connection goes from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to abductor pollicis brevis muscle via median nerve via recurrent branch of the median nerve. This motor connection projects from the C8 segment of cervical spinal cord and T1 segment of thoracic spinal cord.
C8 segment of cervical spinal cord T1 segment of thoracic spinal cord (with-axons-in median nerve recurrent branch of the median nerve) (with-axon-presynaptic-element-in abductor pollicis brevis muscle) (implies Homo sapiens motor neuron)
from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to abductor pollicis brevis muscle via median nerve via recurrent branch of the median nerve
C8-T1 spinal cord to opponens pollicis muscle via recurrent branch of the median nerve
In human, the connection goes from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to opponens pollicis muscle via recurrent branch of the median nerve. This motor connection projects from the C8 segment of cervical spinal cord and T1 segment of thoracic spinal cord.
C8 segment of cervical spinal cord T1 segment of thoracic spinal cord (with-axon-in recurrent branch of the median nerve) (with-axon-presynaptic-element-in opponens pollicis muscle) (implies Homo sapiens motor neuron)
from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to opponens pollicis muscle via recurrent branch of the median nerve
C8-T1 spinal cord to flexor pollicis brevis via recurrent branch of the median nerve
In human, the connection goes from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to flexor pollicis brevis muscle via recurrent branch of the median nerve. This motor connection projects from the C8 segment of cervical spinal cord and T1 segment of thoracic spinal cord.
C8 segment of cervical spinal cord T1 segment of thoracic spinal cord (with-axon-in recurrent branch of the median nerve) (with-axon-presynaptic-element-in flexor pollicis brevis muscle) (implies Homo sapiens motor neuron)
from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to flexor pollicis brevis muscle via recurrent branch of the median nerve
C6-C8 spinal cord to coracoclavicular ligament or subacromial bursa or acromioclavicular joint via suprascapular nerve via articular branch of lateral pectoral nerve
In human, the connection goes from C6 segment of cervical spinal cord or C7 segment of cervical spinal cord or C8 segment of cervical spinal cord to acromioclavicular joint or coracoclavicular ligament or subacromial bursa via articular branch of lateral pectoral nerve via suprascapular nerve. This motor connection projects from the C6 segment of cervical spinal cord, C7 segment of cervical spinal cord and C8 segment of cervical spinal cord.
C6 segment of cervical spinal cord C7 segment of cervical spinal cord C8 segment of cervical spinal cord (with-axons-in articular branch of lateral pectoral nerve suprascapular nerve) (with-axon-presynaptic-element-in acromioclavicular joint coracoclavicular ligament subacromial bursa) (implies Homo sapiens motor neuron)
from C6 segment of cervical spinal cord or C7 segment of cervical spinal cord or C8 segment of cervical spinal cord to acromioclavicular joint or coracoclavicular ligament or subacromial bursa via articular branch of lateral pectoral nerve via suprascapular nerve
accessory ligament of acromioclavicular joint
C5-C7 dorsal root ganglia with axon sensory terminal in shoulder joint via musculocutaneous nerve via lateral cutaneous nerve of the forearm with axon terminal in C5-C7 spinal cord via C5-C7 dorsal roots of spinal cord
In human, the connection goes from fifth cervical dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord via Posterior root of seventh cervical nerve, Posterior root of sixth cervical nerve, posterior root of fifth cervical nerve; from fifth cervical dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to shoulder joint via musculocutaneous nerve via lateral cutaneous nerve of the forearm. This sensory connection projects from the fifth cervical dorsal root ganglion, seventh cervical dorsal root ganglion and sixth cervical dorsal root ganglion.
fifth cervical dorsal root ganglion seventh cervical dorsal root ganglion sixth cervical dorsal root ganglion (with-axons-in Posterior root of fifth cervical nerve Posterior root of seventh cervical nerve Posterior root of sixth cervical nerve) (with-axon-presynaptic-element-in C5 segment of cervical spinal cord C6 segment of cervical spinal cord C7 segment of cervical spinal cord) (implies Homo sapiens sensory neuron)
from fifth cervical dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord via Posterior root of seventh cervical nerve, Posterior root of sixth cervical nerve, posterior root of fifth cervical nerve from fifth cervical dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to shoulder joint via musculocutaneous nerve via lateral cutaneous nerve of the forearm
[neuron type senmot 17] has as a via musculocutaneous nerve and [neuron type senmot 18] has lateral cutaneous nerve of the forearm which is an extention of the musculocutaneous nerve. I extracted them from 2 different tables that one had more information for the via than the other table. The rest of the axioms are the same. The populations are identical. The right modeliing should be "via musculocutaneous nerve via lateral cutaneous nerve of the forearm". I have made the changes now in senmot 18 and rejected senmot 17.\nupdated to add lateral cutaneous nerve of the forearm as axon leading to sensory terminal.
C6-C7 dorsal root ganglia with axon sensory terminal in supinator muscle via posterior interosseous nerve with axon terminal in C6-C7 spinal cord via C6-C7 dorsal roots of spinal cord
In human, the connection goes from seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C6 segment of cervical spinal cord or C7 segment of cervical spinal cord via Posterior root of seventh cervical nerve, Posterior root of sixth cervical nerve; from seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to supinator muscle via posterior interosseous nerve. This sensory connection projects from the seventh cervical dorsal root ganglion and sixth cervical dorsal root ganglion.
seventh cervical dorsal root ganglion sixth cervical dorsal root ganglion (with-axons-in Posterior root of seventh cervical nerve Posterior root of sixth cervical nerve) (with-axon-presynaptic-element-in C6 segment of cervical spinal cord C7 segment of cervical spinal cord) (implies Homo sapiens sensory neuron)
from seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C6 segment of cervical spinal cord or C7 segment of cervical spinal cord via Posterior root of seventh cervical nerve, Posterior root of sixth cervical nerve from seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to supinator muscle via posterior interosseous nerve
updated to remove generic dorsal root of spinal cord in favor of segment specific posterior roots, per ilias.
C5-C7 dorsal root ganglia with axon sensory terminal in lateral or radial half of the forearm (brachioradialis muscle) via musculocutaneous nerve with axon terminal in C5-C7 spinal cord via C5-C7 dorsal roots of spinal cord
In human, the connection goes from fifth cervical dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord via Posterior root of seventh cervical nerve, Posterior root of sixth cervical nerve, posterior root of fifth cervical nerve; from fifth cervical dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to brachioradialis via musculocutaneous nerve. This sensory connection projects from the fifth cervical dorsal root ganglion, seventh cervical dorsal root ganglion and sixth cervical dorsal root ganglion.
from fifth cervical dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord via Posterior root of seventh cervical nerve, Posterior root of sixth cervical nerve, posterior root of fifth cervical nerve from fifth cervical dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to brachioradialis via musculocutaneous nerve
updated to include musculocutaneous nerve as axon leading to sensory terminal.
C8 spinal cord to flexor carpi ulnaris muscle via ulnar nerve
In human, the connection goes from C8 segment of cervical spinal cord to flexor carpi ulnaris muscle via ulnar nerve. This motor connection projects from the C8 segment of cervical spinal cord.
C8 segment of cervical spinal cord (with-axon-in ulnar nerve) (with-axon-presynaptic-element-in flexor carpi ulnaris muscle) (implies Homo sapiens motor neuron)
from C8 segment of cervical spinal cord to flexor carpi ulnaris muscle via ulnar nerve
C8-T1 spinal cord to flexor digitorum profundus muscle via ulnar nerve
In human, the connection goes from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to flexor digitorum profundus via ulnar nerve. This motor connection projects from the C8 segment of cervical spinal cord and T1 segment of thoracic spinal cord.
C8 segment of cervical spinal cord T1 segment of thoracic spinal cord (with-axon-in ulnar nerve) (with-axon-presynaptic-element-in flexor digitorum profundus) (implies Homo sapiens motor neuron)
from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to flexor digitorum profundus via ulnar nerve
C8-T1 spinal cord to the palmar and dorsal interosseous muscles via deep branch of ulnar nerve
In human, the connection goes from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to dorsal interosseous of manus or palmar interosseous muscle of manus via deep branch of ulnar nerve. This motor connection projects from the C8 segment of cervical spinal cord and T1 segment of thoracic spinal cord.
C8 segment of cervical spinal cord T1 segment of thoracic spinal cord (with-axon-in deep branch of ulnar nerve) (with-axon-presynaptic-element-in dorsal interosseous of manus palmar interosseous muscle of manus) (implies Homo sapiens motor neuron)
from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to dorsal interosseous of manus or palmar interosseous muscle of manus via deep branch of ulnar nerve
C8-T1 spinal cord to palmaris brevis muscle via deep branch of ulnar nerve
In human, the connection goes from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to palmaris brevis via deep branch of ulnar nerve. This motor connection projects from the C8 segment of cervical spinal cord and T1 segment of thoracic spinal cord.
C8 segment of cervical spinal cord T1 segment of thoracic spinal cord (with-axon-in deep branch of ulnar nerve) (with-axon-presynaptic-element-in palmaris brevis) (implies Homo sapiens motor neuron)
from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to palmaris brevis via deep branch of ulnar nerve
C8-T1 spinal cord to opponens digiti minimi muscle via deep branch of ulnar nerve
In human, the connection goes from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to opponens digiti minimi of hand via deep branch of ulnar nerve. This motor connection projects from the C8 segment of cervical spinal cord and T1 segment of thoracic spinal cord.
C8 segment of cervical spinal cord T1 segment of thoracic spinal cord (with-axon-in deep branch of ulnar nerve) (with-axon-presynaptic-element-in opponens digiti minimi of hand) (implies Homo sapiens motor neuron)
from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to opponens digiti minimi of hand via deep branch of ulnar nerve
C8-T1 spinal cord to flexor digiti minimi brevis muscle via deep branch of ulnar nerve
In human, the connection goes from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to flexor digiti minimi brevis of hand via deep branch of ulnar nerve. This motor connection projects from the C8 segment of cervical spinal cord and T1 segment of thoracic spinal cord.
C8 segment of cervical spinal cord T1 segment of thoracic spinal cord (with-axon-in deep branch of ulnar nerve) (with-axon-presynaptic-element-in flexor digiti minimi brevis of hand) (implies Homo sapiens motor neuron)
from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to flexor digiti minimi brevis of hand via deep branch of ulnar nerve
flexor brevis minimi digiti muscle (hand)
flexor digiti minimi brevis muscle of hand
flexor digiti quinti brevis muscle (hand)
musculus flexor digiti minimi brevis (manus)
C8-T1 spinal cord to abductor digiti minimi muscle of hand via deep branch of ulnar nerve
In human, the connection goes from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to Abductor digiti minimi muscle of hand via deep branch of ulnar nerve. This motor connection projects from the C8 segment of cervical spinal cord and T1 segment of thoracic spinal cord.
C8 segment of cervical spinal cord T1 segment of thoracic spinal cord (with-axon-in deep branch of ulnar nerve) (with-axon-presynaptic-element-in Abductor digiti minimi muscle of hand) (implies Homo sapiens motor neuron)
from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to Abductor digiti minimi muscle of hand via deep branch of ulnar nerve
C8-T1 spinal cord to the third or fourth lumbrical muscles via deep branch of the ulnar nerve
In human, the connection goes from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to fourth lumbrical muscle of the hand or third lumbrical muscle of the hand via deep branch of ulnar nerve. This motor connection projects from the C8 segment of cervical spinal cord and T1 segment of thoracic spinal cord.
C8 segment of cervical spinal cord T1 segment of thoracic spinal cord (with-axon-in deep branch of ulnar nerve) (with-axon-presynaptic-element-in fourth lumbrical muscle of the hand third lumbrical muscle of the hand) (implies Homo sapiens motor neuron)
from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to fourth lumbrical muscle of the hand or third lumbrical muscle of the hand via deep branch of ulnar nerve
Added ILX to anatomical entities, and added those muscles as destinations for this population.\nAs wrote in another populations we did not create these two terms. Instead I added the more generic one that includes all 4 lumbrical muscles of the hand but the population label distinguishes which ones are innervated. I approve it for now but let's revisit it to discuss it durther.\nlumbrical muscle of manus = third and fourth lumbrical muscle of manus?
C8-T1 dorsal root ganglia with axon sensory terminal in flexor surface OR nails of the 31/2 radial digits OR a corresponding area of the palm via medial root of median nerve with axon terminal in C8-T1 spinal cord via C8-T1 dorsal roots of spinal cord
In human, the connection goes from eighth cervical dorsal root ganglion or first thoracic dorsal root ganglion to flexor surface or nail bed of finger or skin of palm of manus via medial head of median nerve; from eighth cervical dorsal root ganglion or first thoracic dorsal root ganglion to C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve. This sensory connection projects from the eighth cervical dorsal root ganglion and first thoracic dorsal root ganglion.
eighth cervical dorsal root ganglion first thoracic dorsal root ganglion (with-axons-in Posterior root of eighth cervical nerve Posterior root of first thoracic nerve) (with-axon-presynaptic-element-in C8 segment of cervical spinal cord T1 segment of thoracic spinal cord) (implies Homo sapiens sensory neuron)
from eighth cervical dorsal root ganglion or first thoracic dorsal root ganglion to flexor surface or nail bed of finger or skin of palm of manus via medial head of median nerve from eighth cervical dorsal root ganglion or first thoracic dorsal root ganglion to C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve
T1 dorsal root ganglia with axon sensory terminal in skin on the front and medial sides of the upper arm via medial cutaneous nerve of the arm with axon terminal in T1 spinal cord via T1 dorsal root of spinal cord
In human, the connection goes from first thoracic dorsal root ganglion to T1 segment of thoracic spinal cord via Posterior root of first thoracic nerve; from first thoracic dorsal root ganglion to upper arm skin via medial cutaneous nerve of the arm. This sensory connection projects from the first thoracic dorsal root ganglion.
first thoracic dorsal root ganglion (with-axon-in Posterior root of first thoracic nerve) (with-axon-presynaptic-element-in T1 segment of thoracic spinal cord) (implies Homo sapiens sensory neuron)
from first thoracic dorsal root ganglion to T1 segment of thoracic spinal cord via Posterior root of first thoracic nerve from first thoracic dorsal root ganglion to upper arm skin via medial cutaneous nerve of the arm
Had to remove C8 segment of spinal cord as destination for the axon terminal..\nupdated to include the medial cutaneous nerve as an axon to sensory terminal.\nupdated path to replace the generic dorsal root of spinal cord, with segment specific posterior root, per Ilias
C8-T1 dorsal root ganglia with axon sensory terminal in skin over medial side of the forearm via medial cutaneous nerve of the forearm with axon terminal in C8-T1 spinal cord via C8-T1 dorsal roots of spinal cord
In human, the connection goes from eighth cervical dorsal root ganglion or first thoracic dorsal root ganglion to C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve; from eighth cervical dorsal root ganglion or first thoracic dorsal root ganglion to skin of forearm via medial cutaneous nerve of the forearm. This sensory connection projects from the eighth cervical dorsal root ganglion and first thoracic dorsal root ganglion.
from eighth cervical dorsal root ganglion or first thoracic dorsal root ganglion to C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve from eighth cervical dorsal root ganglion or first thoracic dorsal root ganglion to skin of forearm via medial cutaneous nerve of the forearm
updated to include the medial cutaneous nerve of the forearm as an axon leading to sensory terminal.\nupdated to remove generic "dorsal root of spinal cord" with segment specific posterior roots, per ilias.
C7-T1 dorsal root ganglia with axon sensory terminal in ulnar collateral ligament via ulnar nerve with axon terminal in C7-T1 spinal cord via C7-T1 dorsal roots of spinal cord
In human, the connection goes from eighth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion to C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve, Posterior root of seventh cervical nerve; from eighth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion to ulnar collateral ligament via ulnar nerve. This sensory connection projects from the eighth cervical dorsal root ganglion, first thoracic dorsal root ganglion and seventh cervical dorsal root ganglion.
eighth cervical dorsal root ganglion first thoracic dorsal root ganglion seventh cervical dorsal root ganglion (with-axons-in Posterior root of eighth cervical nerve Posterior root of first thoracic nerve Posterior root of seventh cervical nerve) (with-axon-presynaptic-element-in C7 segment of cervical spinal cord C8 segment of cervical spinal cord T1 segment of thoracic spinal cord) (implies Homo sapiens sensory neuron)
from eighth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion to C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve, Posterior root of seventh cervical nerve from eighth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion to ulnar collateral ligament via ulnar nerve
updated the axon to PNS for the ulnar nerve
C7-T1 dorsal root ganglia with axon sensory terminal in dorsum of the hand and dorsum of ulnar 11/2 fingers via ulnar nerve with axon terminal in C7-T1 spinal cord via C7-T1 dorsal roots of spinal cord
In human, the connection goes from eighth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion to C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve, Posterior root of seventh cervical nerve; from eighth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion to dorsum of the hand or dorsum of ulnar 11/2 fingers via ulnar nerve. This sensory connection projects from the eighth cervical dorsal root ganglion, first thoracic dorsal root ganglion and seventh cervical dorsal root ganglion.
from eighth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion to C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve, Posterior root of seventh cervical nerve from eighth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion to dorsum of the hand or dorsum of ulnar 11/2 fingers via ulnar nerve
updated to include ulnar nerve as axon leading to sensory terminal.\nupdated per ilias to replace the generic dorsal root of spinal cord with segment specific posterior roots.
C7-T1 dorsal root ganglia with axon sensory terminal in flexor surface of ulnar 1½ fingers or their nail beds via ulnar nerve with axon terminal in C7-T1 spinal cord via C7-T1 dorsal roots of spinal cord
In human, the connection goes from eighth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion to C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve, Posterior root of seventh cervical nerve; from eighth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion to flexor surface of ulnar 11/2 finger or nail bed of finger via ulnar nerve. This sensory connection projects from the eighth cervical dorsal root ganglion, first thoracic dorsal root ganglion and seventh cervical dorsal root ganglion.
from eighth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion to C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve, Posterior root of seventh cervical nerve from eighth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion to flexor surface of ulnar 11/2 finger or nail bed of finger via ulnar nerve
updated to include ulnar nerve as axon leading to sensory terminal.\nNo, there is no. This populations suggests that sensory axon terminals reach both the palmar side with the flexor surface and the dorsal nail beds of these fingers.\nis there a flexor surface for the nail bed?
C5-C6 spinal cord to deltoid muscle via axillary nerve
In human, the connection goes from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord to deltoid via axillary nerve. This motor connection projects from the C5 segment of cervical spinal cord and C6 segment of cervical spinal cord.
C5 segment of cervical spinal cord C6 segment of cervical spinal cord (with-axon-in axillary nerve) (with-axon-presynaptic-element-in deltoid) (implies Homo sapiens motor neuron)
from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord to deltoid via axillary nerve
C5-C6 spinal cord to teres minor muscle via axillary nerve
In human, the connection goes from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord to teres minor muscle via axillary nerve. This motor connection projects from the C5 segment of cervical spinal cord and C6 segment of cervical spinal cord.
C5 segment of cervical spinal cord C6 segment of cervical spinal cord (with-axon-in axillary nerve) (with-axon-presynaptic-element-in teres minor muscle) (implies Homo sapiens motor neuron)
from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord to teres minor muscle via axillary nerve
C5-C6 spinal cord to infraspinatus muscle via suprascapular nerve
In human, the connection goes from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord to infraspinatus muscle via suprascapular nerve. This motor connection projects from the C5 segment of cervical spinal cord and C6 segment of cervical spinal cord.
C5 segment of cervical spinal cord C6 segment of cervical spinal cord (with-axon-in suprascapular nerve) (with-axon-presynaptic-element-in infraspinatus muscle) (implies Homo sapiens motor neuron)
from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord to infraspinatus muscle via suprascapular nerve
C5-C7 spinal cord to teres major muscle via lower (inferior) subscapular nerve
In human, the connection goes from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord to teres major muscle via inferior subscapular nerve. This motor connection projects from the C5 segment of cervical spinal cord, C6 segment of cervical spinal cord and C7 segment of cervical spinal cord.
C5 segment of cervical spinal cord C6 segment of cervical spinal cord C7 segment of cervical spinal cord (with-axon-in inferior subscapular nerve) (with-axon-presynaptic-element-in teres major muscle) (implies Homo sapiens motor neuron)
from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord to teres major muscle via inferior subscapular nerve
C5-C7 spinal cord to subscapularis muscle via upper subscapular nerve
In human, the connection goes from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord to subscapularis muscle via upper subscapular nerve. This motor connection projects from the C5 segment of cervical spinal cord, C6 segment of cervical spinal cord and C7 segment of cervical spinal cord.
C5 segment of cervical spinal cord C6 segment of cervical spinal cord C7 segment of cervical spinal cord (with-axon-in upper subscapular nerve) (with-axon-presynaptic-element-in subscapularis muscle) (implies Homo sapiens motor neuron)
from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord to subscapularis muscle via upper subscapular nerve
C5-C6 spinal cord to supraspinatus muscle via suprascapular nerve
In human, the connection goes from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord to supraspinatus muscle via suprascapular nerve. This motor connection projects from the C5 segment of cervical spinal cord and C6 segment of cervical spinal cord.
C5 segment of cervical spinal cord C6 segment of cervical spinal cord (with-axon-in suprascapular nerve) (with-axon-presynaptic-element-in supraspinatus muscle) (implies Homo sapiens motor neuron)
from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord to supraspinatus muscle via suprascapular nerve
C5-C7 spinal cord to pectoralis major muscle via lateral pectoral nerve
In human, the connection goes from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord to pectoralis major via Lateral pectoral nerve component of C5 nerve, Lateral pectoral nerve component of C6 nerve, Lateral pectoral nerve component of C7 nerve. This motor connection projects from the C5 segment of cervical spinal cord, C6 segment of cervical spinal cord and C7 segment of cervical spinal cord.
C5 segment of cervical spinal cord C6 segment of cervical spinal cord C7 segment of cervical spinal cord (with-axons-in Lateral pectoral nerve component of C5 nerve Lateral pectoral nerve component of C6 nerve Lateral pectoral nerve component of C7 nerve) (with-axon-presynaptic-element-in pectoralis major) (implies Homo sapiens motor neuron)
from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord to pectoralis major via Lateral pectoral nerve component of C5 nerve, Lateral pectoral nerve component of C6 nerve, Lateral pectoral nerve component of C7 nerve
C8-T1 spinal cord to pectoralis major muscle via medial pectoral nerve
In human, the connection goes from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to pectoralis major via medial pectoral nerve. This motor connection projects from the C8 segment of cervical spinal cord and T1 segment of thoracic spinal cord.
C8 segment of cervical spinal cord T1 segment of thoracic spinal cord (with-axon-in medial pectoral nerve) (with-axon-presynaptic-element-in pectoralis major) (implies Homo sapiens motor neuron)
from C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to pectoralis major via medial pectoral nerve
Updated population to simplify the routing to medial pectoral nerve (rather than medial pectoral nerve component of T1 and medial pectoral nerve component of C8) since the ontology modeling is not present for the latter.
C7-C8 spinal cord to pectoralis minor muscle via medial pectoral nerve
In human, the connection goes from C7 segment of cervical spinal cord or C8 segment of cervical spinal cord to pectoralis minor via medial pectoral nerve. This motor connection projects from the C7 segment of cervical spinal cord and C8 segment of cervical spinal cord.
C7 segment of cervical spinal cord C8 segment of cervical spinal cord (with-axon-in medial pectoral nerve) (with-axon-presynaptic-element-in pectoralis minor) (implies Homo sapiens motor neuron)
from C7 segment of cervical spinal cord or C8 segment of cervical spinal cord to pectoralis minor via medial pectoral nerve
Population is now corrected.\nIt is a copy-paste error when adding the IDs in columns F and G. It should be C7-C8.\n@ilias - this is modeled as C8-T1; not C7-C8. which is correct?\nIlias - this matches what is in the SENMOT spreadsheet, but that doesn't match the curator statement. Which is correct please?
C7 spinal cord to triceps brachii muscle via radial nerve
In human, the connection goes from C7 segment of cervical spinal cord to triceps brachii via radial nerve. This motor connection projects from the C7 segment of cervical spinal cord.
C7 segment of cervical spinal cord (with-axon-in radial nerve) (with-axon-presynaptic-element-in triceps brachii) (implies Homo sapiens motor neuron)
from C7 segment of cervical spinal cord to triceps brachii via radial nerve
Adding a Question - this population seems like it should be modeled C6-C8 in order to match the alertnote that is present. Ilias, Please confirm. thanks!
C7 spinal cord to long head of triceps brachii muscle via radial nerve
In human, the connection goes from C7 segment of cervical spinal cord to long head of triceps brachii muscle via radial nerve. This motor connection projects from the C7 segment of cervical spinal cord.
C7 segment of cervical spinal cord (with-axon-in radial nerve) (with-axon-presynaptic-element-in long head of triceps brachii muscle) (implies Homo sapiens motor neuron)
from C7 segment of cervical spinal cord to long head of triceps brachii muscle via radial nerve
C5-T1 spinal cord to the lateral portion of the brachialis muscle via radial nerve
In human, the connection goes from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to brachialis muscle via radial nerve. This motor connection projects from the C5 segment of cervical spinal cord, C6 segment of cervical spinal cord, C7 segment of cervical spinal cord, C8 segment of cervical spinal cord and T1 segment of thoracic spinal cord.
C5 segment of cervical spinal cord C6 segment of cervical spinal cord C7 segment of cervical spinal cord C8 segment of cervical spinal cord T1 segment of thoracic spinal cord (with-axon-in radial nerve) (with-axon-presynaptic-element-in brachialis muscle) (implies Homo sapiens motor neuron)
from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to brachialis muscle via radial nerve
C5-T1 spinal cord to the entire extensor-supinator group of muscles via radial nerve
In human, the connection goes from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to supinator muscle via radial nerve. This motor connection projects from the C5 segment of cervical spinal cord, C6 segment of cervical spinal cord, C7 segment of cervical spinal cord, C8 segment of cervical spinal cord and T1 segment of thoracic spinal cord.
C5 segment of cervical spinal cord C6 segment of cervical spinal cord C7 segment of cervical spinal cord C8 segment of cervical spinal cord T1 segment of thoracic spinal cord (with-axon-in radial nerve) (with-axon-presynaptic-element-in supinator muscle) (implies Homo sapiens motor neuron)
from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord to supinator muscle via radial nerve
C6 spinal cord to brachioradialis muscle via radial nerve
In human, the connection goes from C6 segment of cervical spinal cord to brachioradialis via radial nerve. This motor connection projects from the C6 segment of cervical spinal cord.
C6 segment of cervical spinal cord (with-axon-in radial nerve) (with-axon-presynaptic-element-in brachioradialis) (implies Homo sapiens motor neuron)
from C6 segment of cervical spinal cord to brachioradialis via radial nerve
C6 spinal cord to extensor carpi radialis longus muscle via radial nerve
In human, the connection goes from C6 segment of cervical spinal cord to extensor carpi radialis longus muscle via radial nerve. This motor connection projects from the C6 segment of cervical spinal cord.
C6 segment of cervical spinal cord (with-axon-in radial nerve) (with-axon-presynaptic-element-in extensor carpi radialis longus muscle) (implies Homo sapiens motor neuron)
from C6 segment of cervical spinal cord to extensor carpi radialis longus muscle via radial nerve
C7 spinal cord to extensor carpi radialis brevis muscle via deep branch of radial nerve
In human, the connection goes from C7 segment of cervical spinal cord to extensor carpi radialis brevis muscle via deep branch of radial nerve. This motor connection projects from the C7 segment of cervical spinal cord.
C7 segment of cervical spinal cord (with-axon-in deep branch of radial nerve) (with-axon-presynaptic-element-in extensor carpi radialis brevis muscle) (implies Homo sapiens motor neuron)
from C7 segment of cervical spinal cord to extensor carpi radialis brevis muscle via deep branch of radial nerve
C7 spinal cord to extensor digitorum communis muscle via posterior interosseous nerve
In human, the connection goes from C7 segment of cervical spinal cord to extensor digitorum communis via posterior interosseous nerve. This motor connection projects from the C7 segment of cervical spinal cord.
C7 segment of cervical spinal cord (with-axon-in posterior interosseous nerve) (with-axon-presynaptic-element-in extensor digitorum communis) (implies Homo sapiens motor neuron)
from C7 segment of cervical spinal cord to extensor digitorum communis via posterior interosseous nerve
C7 spinal cord to extensor digiti minimi muscle via posterior interosseous nerve
In human, the connection goes from C7 segment of cervical spinal cord to extensor digiti minimi muscle via posterior interosseous nerve. This motor connection projects from the C7 segment of cervical spinal cord.
C7 segment of cervical spinal cord (with-axon-in posterior interosseous nerve) (with-axon-presynaptic-element-in extensor digiti minimi muscle) (implies Homo sapiens motor neuron)
from C7 segment of cervical spinal cord to extensor digiti minimi muscle via posterior interosseous nerve
C7 spinal cord to extensor carpi ulnaris muscle via posterior interosseous nerve
In human, the connection goes from C7 segment of cervical spinal cord to extensor carpi ulnaris muscle via posterior interosseous nerve. This motor connection projects from the C7 segment of cervical spinal cord.
C7 segment of cervical spinal cord (with-axon-in posterior interosseous nerve) (with-axon-presynaptic-element-in extensor carpi ulnaris muscle) (implies Homo sapiens motor neuron)
from C7 segment of cervical spinal cord to extensor carpi ulnaris muscle via posterior interosseous nerve
C6-C8 spinal cord to anconeus muscle via radial nerve
In human, the connection goes from C6 segment of cervical spinal cord or C7 segment of cervical spinal cord or C8 segment of cervical spinal cord to anconeus muscle via radial nerve. This motor connection projects from the C6 segment of cervical spinal cord, C7 segment of cervical spinal cord and C8 segment of cervical spinal cord.
C6 segment of cervical spinal cord C7 segment of cervical spinal cord C8 segment of cervical spinal cord (with-axon-in radial nerve) (with-axon-presynaptic-element-in anconeus muscle) (implies Homo sapiens motor neuron)
from C6 segment of cervical spinal cord or C7 segment of cervical spinal cord or C8 segment of cervical spinal cord to anconeus muscle via radial nerve
C7-C8 spinal cord to abductor pollicis longus muscle via posterior interosseous nerve
In human, the connection goes from C7 segment of cervical spinal cord or C8 segment of cervical spinal cord to abductor pollicis longus via posterior interosseous nerve. This motor connection projects from the C7 segment of cervical spinal cord and C8 segment of cervical spinal cord.
C7 segment of cervical spinal cord C8 segment of cervical spinal cord (with-axon-in posterior interosseous nerve) (with-axon-presynaptic-element-in abductor pollicis longus) (implies Homo sapiens motor neuron)
from C7 segment of cervical spinal cord or C8 segment of cervical spinal cord to abductor pollicis longus via posterior interosseous nerve
C7-C8 spinal cord to extensor pollicis brevis muscle via posterior interosseous nerve
In human, the connection goes from C7 segment of cervical spinal cord or C8 segment of cervical spinal cord to extensor pollicis brevis muscle via Radial nerve component of C7 nerve, Radial nerve component of C8 nerve via posterior interosseous nerve. This motor connection projects from the C7 segment of cervical spinal cord and C8 segment of cervical spinal cord.
C7 segment of cervical spinal cord C8 segment of cervical spinal cord (with-axons-in Radial nerve component of C7 nerve Radial nerve component of C8 nerve posterior interosseous nerve) (with-axon-presynaptic-element-in extensor pollicis brevis muscle) (implies Homo sapiens motor neuron)
from C7 segment of cervical spinal cord or C8 segment of cervical spinal cord to extensor pollicis brevis muscle via Radial nerve component of C7 nerve, Radial nerve component of C8 nerve via posterior interosseous nerve
Added them. In this case it is not a big leap from the source as these nerves do give rise to the posterior interosseous nerve.\nDo we want more expanded routing to mention the medial radial nerve that then branches off to the posterior interosseous nerve (deep branch of radial nerve)? http://uri.interlex.org/base/ilx_0785982 & http://uri.interlex.org/base/ilx_0790142 (Radial nerve component of C7 nerve and Radial nerve component of C8 nerve)
C7-C8 spinal cord to extensor pollicis longus muscle via posterior interosseous nerve
In human, the connection goes from C7 segment of cervical spinal cord or C8 segment of cervical spinal cord to extensor pollicis longus muscle via posterior interosseous nerve. This motor connection projects from the C7 segment of cervical spinal cord and C8 segment of cervical spinal cord.
C7 segment of cervical spinal cord C8 segment of cervical spinal cord (with-axon-in posterior interosseous nerve) (with-axon-presynaptic-element-in extensor pollicis longus muscle) (implies Homo sapiens motor neuron)
from C7 segment of cervical spinal cord or C8 segment of cervical spinal cord to extensor pollicis longus muscle via posterior interosseous nerve
C7-C8 spinal cord to extensor indicis muscle via posterior interosseous nerve
In human, the connection goes from C7 segment of cervical spinal cord or C8 segment of cervical spinal cord to extensor indicis muscle via posterior interosseous nerve. This motor connection projects from the C7 segment of cervical spinal cord and C8 segment of cervical spinal cord.
C7 segment of cervical spinal cord C8 segment of cervical spinal cord (with-axon-in posterior interosseous nerve) (with-axon-presynaptic-element-in extensor indicis muscle) (implies Homo sapiens motor neuron)
from C7 segment of cervical spinal cord or C8 segment of cervical spinal cord to extensor indicis muscle via posterior interosseous nerve
C5 dorsal root ganglia with axon sensory terminal in glenohumeral (shoulder) joint via axillary nerve with axon terminal in C5 spinal cord via C5 dorsal root of spinal cord
In human, the connection goes from fifth cervical dorsal root ganglion to C5 segment of cervical spinal cord via posterior root of fifth cervical nerve; from fifth cervical dorsal root ganglion to glenohumeral joint via axillary nerve. This sensory connection projects from the fifth cervical dorsal root ganglion.
fifth cervical dorsal root ganglion (with-axon-in Posterior root of fifth cervical nerve) (with-axon-presynaptic-element-in C5 segment of cervical spinal cord) (implies Homo sapiens sensory neuron)
from fifth cervical dorsal root ganglion to C5 segment of cervical spinal cord via posterior root of fifth cervical nerve from fifth cervical dorsal root ganglion to glenohumeral joint via axillary nerve
added axillary nerve as axon leading to sensory terminal.\nRemoved generic dorsal root of spinal cord in favor of segment specific posterior root, per Ilias.
C5-C6 dorsal root ganglia with axon sensory terminal in skin over lower half and the center of the deltoid muscle via upper lateral cutaneous nerve with axon terminal in C5-C6 spinal cord via C5-C6 dorsal roots of spinal cord
In human, the connection goes from fifth cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C5 segment of cervical spinal cord or C6 segment of cervical spinal cord via Posterior root of sixth cervical nerve, posterior root of fifth cervical nerve; from fifth cervical dorsal root ganglion or sixth cervical dorsal root ganglion to skin of shoulder via superior lateral cutaneous nerve of arm. This sensory connection projects from the fifth cervical dorsal root ganglion and sixth cervical dorsal root ganglion.
fifth cervical dorsal root ganglion sixth cervical dorsal root ganglion (with-axons-in Posterior root of fifth cervical nerve Posterior root of sixth cervical nerve) (with-axon-presynaptic-element-in C5 segment of cervical spinal cord C6 segment of cervical spinal cord) (implies Homo sapiens sensory neuron)
from fifth cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C5 segment of cervical spinal cord or C6 segment of cervical spinal cord via Posterior root of sixth cervical nerve, posterior root of fifth cervical nerve from fifth cervical dorsal root ganglion or sixth cervical dorsal root ganglion to skin of shoulder via superior lateral cutaneous nerve of arm
Added 'superior lateral cutaneous nerve of arm' for axonLeadingToSensoryTerminal.\nhttp://uri.interlex.org/base/ilx_0741757 ILX term has been deleted.
C5-T1 dorsal root ganglia with axon sensory terminal in skin along extensor surface of upper arm down to the elbow via posterior cutaneous nerve of the arm with axon terminal in C5-T1 spinal cord via C5-T1 dorsal roots of spinal cord
In human, the connection goes from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve, Posterior root of seventh cervical nerve, Posterior root of sixth cervical nerve, posterior root of fifth cervical nerve; from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to skin of elbow or upper arm skin via Posterior cutaneous nerve of arm. This sensory connection projects from the eighth cervical dorsal root ganglion, fifth cervical dorsal root ganglion, first thoracic dorsal root ganglion, seventh cervical dorsal root ganglion and sixth cervical dorsal root ganglion.
eighth cervical dorsal root ganglion fifth cervical dorsal root ganglion first thoracic dorsal root ganglion seventh cervical dorsal root ganglion sixth cervical dorsal root ganglion (with-axons-in Posterior root of eighth cervical nerve Posterior root of fifth cervical nerve Posterior root of first thoracic nerve Posterior root of seventh cervical nerve Posterior root of sixth cervical nerve) (with-axon-presynaptic-element-in C5 segment of cervical spinal cord C6 segment of cervical spinal cord C7 segment of cervical spinal cord C8 segment of cervical spinal cord T1 segment of thoracic spinal cord) (implies Homo sapiens sensory neuron)
from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve, Posterior root of seventh cervical nerve, Posterior root of sixth cervical nerve, posterior root of fifth cervical nerve from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to skin of elbow or upper arm skin via Posterior cutaneous nerve of arm
added Axon to PNS\nupdated to include posterior cutaneous nerve of arm as axon leading to sensory terminal.\nupdated path to remove "dorsal root of spinal cord" in favor of segment specific posterior roots., per ilias
C5-T1 dorsal root ganglia with axon sensory terminal in skin over the lateral part of the upper arm via inferior lateral cutaneous nerve of the arm with axon terminal in C5-T1 spinal cord via dorsal root of spinal cord
In human, the connection goes from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve, Posterior root of seventh cervical nerve, Posterior root of sixth cervical nerve, posterior root of fifth cervical nerve; from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to upper arm skin via inferior lateral cutaneous nerve of arm. This sensory connection projects from the eighth cervical dorsal root ganglion, fifth cervical dorsal root ganglion, first thoracic dorsal root ganglion, seventh cervical dorsal root ganglion and sixth cervical dorsal root ganglion.
from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve, Posterior root of seventh cervical nerve, Posterior root of sixth cervical nerve, posterior root of fifth cervical nerve from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to upper arm skin via inferior lateral cutaneous nerve of arm
Added the individual dorsal roots\nupdated to include inferior lateral cutaneous nerve of arm as axon leading to sensory terminal \n**HOWEVER, this uses a single, generic dorsal root as a via. This should be revisited after round trip.
C5-T1 dorsal root ganglia with axon sensory terminal in skin over extensor surface of the forearm to the wrist via radial nerve with axon terminal in C5-T1 spinal cord via C5-T1 dorsal roots of spinal cord
In human, the connection goes from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve, Posterior root of seventh cervical nerve, Posterior root of sixth cervical nerve, posterior root of fifth cervical nerve; from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to skin of forearm via radial nerve. This sensory connection projects from the eighth cervical dorsal root ganglion, fifth cervical dorsal root ganglion, first thoracic dorsal root ganglion, seventh cervical dorsal root ganglion and sixth cervical dorsal root ganglion.
from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve, Posterior root of seventh cervical nerve, Posterior root of sixth cervical nerve, posterior root of fifth cervical nerve from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to skin of forearm via radial nerve
updated to include radial nerve as axon leading to sensory terminal.\nreplaced the generic "dorsal root of spinal cord" with more discrete segmental posterior roots, per ilias.
C5-T1 dorsal root ganglia with axon sensory terminal in interosseous membrane via posterior interosseous nerve with axon terminal in C5-T1 spinal cord via C5-T1 dorsal roots of spinal cord
In human, the connection goes from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve, Posterior root of seventh cervical nerve, Posterior root of sixth cervical nerve, posterior root of fifth cervical nerve; from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to Interosseous membrane of arm via posterior interosseous nerve. This sensory connection projects from the eighth cervical dorsal root ganglion, fifth cervical dorsal root ganglion, first thoracic dorsal root ganglion, seventh cervical dorsal root ganglion and sixth cervical dorsal root ganglion.
from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve, Posterior root of seventh cervical nerve, Posterior root of sixth cervical nerve, posterior root of fifth cervical nerve from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to Interosseous membrane of arm via posterior interosseous nerve
updated to includer psterior interosseous nerve as axon leading to sensory terminal.\nreplaced generic "dorsal root of spinal cord" with segment specific posterior roots, per ilias.
C5-T1 dorsal root ganglia with axon sensory terminal in periosteum of the radius, ulna, wrist or extensor surfaces of carpal joints via posterior interosseous nerve with axon terminal in C5-T1 spinal cord via C5-T1 dorsal roots of spinal cord
In human, the connection goes from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve, Posterior root of seventh cervical nerve, Posterior root of sixth cervical nerve, posterior root of fifth cervical nerve; from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to periosteum of the forearm or radio-carpal joint via posterior interosseous nerve. This sensory connection projects from the eighth cervical dorsal root ganglion, fifth cervical dorsal root ganglion, first thoracic dorsal root ganglion, seventh cervical dorsal root ganglion and sixth cervical dorsal root ganglion.
from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve, Posterior root of seventh cervical nerve, Posterior root of sixth cervical nerve, posterior root of fifth cervical nerve from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to periosteum of the forearm or radio-carpal joint via posterior interosseous nerve
updated to include the posterior interosseus nerve as axon leading to sensory terminal.\nreplaced the generic "dorsal root of spinal cord" with discrete posterior roots of spinal cord, per ilias.
C5-T1 dorsal root ganglia with axon sensory terminal in radial 31/2 (falling short of the nail beds) or corresponding area of the back of the hand via superficial branch of the radial nerve with axon terminal in C5-T1 spinal cord via C5-T1 dorsal roots of spinal cord
In human, the connection goes from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve, Posterior root of seventh cervical nerve, Posterior root of sixth cervical nerve, posterior root of fifth cervical nerve; from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to dorsal skin of finger or manual digit 1 or manual digit 2 or manual digit 3 via superficial branch of radial nerve. This sensory connection projects from the eighth cervical dorsal root ganglion, fifth cervical dorsal root ganglion, first thoracic dorsal root ganglion, seventh cervical dorsal root ganglion and sixth cervical dorsal root ganglion.
from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord or C8 segment of cervical spinal cord or T1 segment of thoracic spinal cord via Posterior root of eighth cervical nerve, Posterior root of first thoracic nerve, Posterior root of seventh cervical nerve, Posterior root of sixth cervical nerve, posterior root of fifth cervical nerve from eighth cervical dorsal root ganglion or fifth cervical dorsal root ganglion or first thoracic dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to dorsal skin of finger or manual digit 1 or manual digit 2 or manual digit 3 via superficial branch of radial nerve
Created the specific term http://uri.interlex.org/base/ilx_0797391 and changed it in the modeling.\nthis needs the superficial branch of radial nerve, however UBERON ID is just radial nerve. this is updated to match the ingestion. it doesn't match the A2BvC
subdivision of skin of dorsal part of finger
C5-C7 dorsal root ganglia with axon sensory terminal in lateral or radial half of the forearm via musculocutaneous nerve via lateral cutaneous nerve of the forearm with axon terminal in C5-C7 spinal cord via C5-C7 dorsal roots of spinal cord
In human, the connection goes from fifth cervical dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord via Posterior root of seventh cervical nerve, Posterior root of sixth cervical nerve, posterior root of fifth cervical nerve; from fifth cervical dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to dorsal skin of finger or skin of forearm via musculocutaneous nerve. This sensory connection projects from the fifth cervical dorsal root ganglion, seventh cervical dorsal root ganglion and sixth cervical dorsal root ganglion.
from fifth cervical dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to C5 segment of cervical spinal cord or C6 segment of cervical spinal cord or C7 segment of cervical spinal cord via Posterior root of seventh cervical nerve, Posterior root of sixth cervical nerve, posterior root of fifth cervical nerve from fifth cervical dorsal root ganglion or seventh cervical dorsal root ganglion or sixth cervical dorsal root ganglion to dorsal skin of finger or skin of forearm via musculocutaneous nerve
updated to include musculocutaneous nerve as axon leading to sensory terminal.\nUpdated path to include individual spinal roots instead of the generic "dorsal root of spinal cord", per ilias.
C3-C4 spinal cord to trapezius muscle via accessory nerve XI
In human, the connection goes from C3 segment of cervical spinal cord or C4 segment of cervical spinal cord to trapezius muscle via accessory XI nerve. This motor connection projects from the C3 segment of cervical spinal cord and C4 segment of cervical spinal cord.
C3 segment of cervical spinal cord C4 segment of cervical spinal cord (with-axon-in accessory XI nerve) (with-axon-presynaptic-element-in trapezius muscle) (implies Homo sapiens motor neuron)
from C3 segment of cervical spinal cord or C4 segment of cervical spinal cord to trapezius muscle via accessory XI nerve
C3-C5 spinal cord to levator scapulae muscle via spinal nerve OR dorsal scapular nerve
In human, the connection goes from C3 segment of cervical spinal cord or C4 segment of cervical spinal cord or C5 segment of cervical spinal cord to levator scapulae muscle via dorsal scapular nerve, spinal nerve. This motor connection projects from the C3 segment of cervical spinal cord, C4 segment of cervical spinal cord and C5 segment of cervical spinal cord.
C3 segment of cervical spinal cord C4 segment of cervical spinal cord C5 segment of cervical spinal cord (with-axons-in dorsal scapular nerve spinal nerve) (with-axon-presynaptic-element-in levator scapulae muscle) (implies Homo sapiens motor neuron)
from C3 segment of cervical spinal cord or C4 segment of cervical spinal cord or C5 segment of cervical spinal cord to levator scapulae muscle via dorsal scapular nerve, spinal nerve
@ilias, i think that this matches what Tom described yesterday, to wit: "if they don't actively say that routing is confined to a level with no crossing between levels then then absense of that statement would count as support for crossing" If you agree, please remove the tag: ALERT - spinal segmental routing visualization. thanks!\ndo we want these to go through the segmental spinal nerves (which exist in interlex) instead of the more granular uberon spinal nerve?
C4-C5 spinal cord to rhomboid major muscle via dorsal scapular nerve
In human, the connection goes from C4 segment of cervical spinal cord or C5 segment of cervical spinal cord to rhomboid major muscle via dorsal scapular nerve. This motor connection projects from the C4 segment of cervical spinal cord and C5 segment of cervical spinal cord.
C4 segment of cervical spinal cord C5 segment of cervical spinal cord (with-axon-in dorsal scapular nerve) (with-axon-presynaptic-element-in rhomboid major muscle) (implies Homo sapiens motor neuron)
from C4 segment of cervical spinal cord or C5 segment of cervical spinal cord to rhomboid major muscle via dorsal scapular nerve
C4-C5 spinal cord to rhomboid minor muscle via dorsal scapular nerve
In human, the connection goes from C4 segment of cervical spinal cord or C5 segment of cervical spinal cord to rhomboid minor muscle via dorsal scapular nerve. This motor connection projects from the C4 segment of cervical spinal cord and C5 segment of cervical spinal cord.
C4 segment of cervical spinal cord C5 segment of cervical spinal cord (with-axon-in dorsal scapular nerve) (with-axon-presynaptic-element-in rhomboid minor muscle) (implies Homo sapiens motor neuron)
from C4 segment of cervical spinal cord or C5 segment of cervical spinal cord to rhomboid minor muscle via dorsal scapular nerve
C5-C6 spinal cord to subclavius muscle via subclavian nerve
In human, the connection goes from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord to subclavius via Subclavian nerve. This motor connection projects from the C5 segment of cervical spinal cord and C6 segment of cervical spinal cord.
C5 segment of cervical spinal cord C6 segment of cervical spinal cord (with-axon-in Subclavian nerve) (with-axon-presynaptic-element-in subclavius) (implies Homo sapiens motor neuron)
from C5 segment of cervical spinal cord or C6 segment of cervical spinal cord to subclavius via Subclavian nerve
C5 spinal cord to serratus anterior muscle via long thoracic nerve
In human, the connection goes from C5 segment of cervical spinal cord to serratus anterior muscle via Long thoracic nerve component of C5 nerve. This motor connection projects from the C5 segment of cervical spinal cord.
C5 segment of cervical spinal cord (with-axon-in Long thoracic nerve component of C5 nerve) (with-axon-presynaptic-element-in serratus anterior muscle) (implies Homo sapiens motor neuron)
from C5 segment of cervical spinal cord to serratus anterior muscle via Long thoracic nerve component of C5 nerve
T1-T11 spinal cord to external intercostal muscle via T1-T11 intercostal nerves
In human, the connection goes from T1 segment of thoracic spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T2 segment of thoracic spinal cord or T3 segment of thoracic spinal cord or T4 segment of thoracic spinal cord or T5 segment of thoracic spinal cord or T6 segment of thoracic spinal cord or T7 segment of thoracic spinal cord or T8 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to external intercostal muscle via Eighth intercostal nerve, Eleventh intercostal nerve, Fifth intercostal nerve, First intercostal nerve, Fourth intercostal nerve, Ninth intercostal nerve, Second intercostal nerve, Seventh intercostal nerve, Sixth intercostal nerve, Tenth intercostal nerve, Third intercostal nerve. This motor connection projects from the T1 segment of thoracic spinal cord, T2 segment of thoracic spinal cord, T3 segment of thoracic spinal cord, T4 segment of thoracic spinal cord, T5 segment of thoracic spinal cord, T6 segment of thoracic spinal cord, T7 segment of thoracic spinal cord, T8 segment of thoracic spinal cord, T9 segment of thoracic spinal cord, T10 segment of thoracic spinal cord and T11 segment of thoracic spinal cord.
T1 segment of thoracic spinal cord T10 segment of thoracic spinal cord T11 segment of thoracic spinal cord T2 segment of thoracic spinal cord T3 segment of thoracic spinal cord T4 segment of thoracic spinal cord T5 segment of thoracic spinal cord T6 segment of thoracic spinal cord T7 segment of thoracic spinal cord T8 segment of thoracic spinal cord T9 segment of thoracic spinal cord (with-axons-in Eighth intercostal nerve Eleventh intercostal nerve Fifth intercostal nerve First intercostal nerve Fourth intercostal nerve Ninth intercostal nerve Second intercostal nerve Seventh intercostal nerve Sixth intercostal nerve Tenth intercostal nerve Third intercostal nerve) (with-axon-presynaptic-element-in external intercostal muscle) (implies Homo sapiens motor neuron)
from T1 segment of thoracic spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T2 segment of thoracic spinal cord or T3 segment of thoracic spinal cord or T4 segment of thoracic spinal cord or T5 segment of thoracic spinal cord or T6 segment of thoracic spinal cord or T7 segment of thoracic spinal cord or T8 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to external intercostal muscle via Eighth intercostal nerve, Eleventh intercostal nerve, Fifth intercostal nerve, First intercostal nerve, Fourth intercostal nerve, Ninth intercostal nerve, Second intercostal nerve, Seventh intercostal nerve, Sixth intercostal nerve, Tenth intercostal nerve, Third intercostal nerve
At it is now\nUpdated the vias - but need to know if we want them interconnected like it is now, or have the nerves only conduit from that segment to the muscle?
T1-T11 spinal cord to internal intercostal muscle via T1-T11 intercostal nerves
In human, the connection goes from T1 segment of thoracic spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T2 segment of thoracic spinal cord or T3 segment of thoracic spinal cord or T4 segment of thoracic spinal cord or T5 segment of thoracic spinal cord or T6 segment of thoracic spinal cord or T7 segment of thoracic spinal cord or T8 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to internal intercostal muscle via Eighth intercostal nerve, Eleventh intercostal nerve, Fifth intercostal nerve, First intercostal nerve, Fourth intercostal nerve, Ninth intercostal nerve, Second intercostal nerve, Seventh intercostal nerve, Sixth intercostal nerve, Tenth intercostal nerve, Third intercostal nerve. This motor connection projects from the T1 segment of thoracic spinal cord, T2 segment of thoracic spinal cord, T3 segment of thoracic spinal cord, T4 segment of thoracic spinal cord, T5 segment of thoracic spinal cord, T6 segment of thoracic spinal cord, T7 segment of thoracic spinal cord, T8 segment of thoracic spinal cord, T9 segment of thoracic spinal cord, T10 segment of thoracic spinal cord and T11 segment of thoracic spinal cord.
T1 segment of thoracic spinal cord T10 segment of thoracic spinal cord T11 segment of thoracic spinal cord T2 segment of thoracic spinal cord T3 segment of thoracic spinal cord T4 segment of thoracic spinal cord T5 segment of thoracic spinal cord T6 segment of thoracic spinal cord T7 segment of thoracic spinal cord T8 segment of thoracic spinal cord T9 segment of thoracic spinal cord (with-axons-in Eighth intercostal nerve Eleventh intercostal nerve Fifth intercostal nerve First intercostal nerve Fourth intercostal nerve Ninth intercostal nerve Second intercostal nerve Seventh intercostal nerve Sixth intercostal nerve Tenth intercostal nerve Third intercostal nerve) (with-axon-presynaptic-element-in internal intercostal muscle) (implies Homo sapiens motor neuron)
from T1 segment of thoracic spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T2 segment of thoracic spinal cord or T3 segment of thoracic spinal cord or T4 segment of thoracic spinal cord or T5 segment of thoracic spinal cord or T6 segment of thoracic spinal cord or T7 segment of thoracic spinal cord or T8 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to internal intercostal muscle via Eighth intercostal nerve, Eleventh intercostal nerve, Fifth intercostal nerve, First intercostal nerve, Fourth intercostal nerve, Ninth intercostal nerve, Second intercostal nerve, Seventh intercostal nerve, Sixth intercostal nerve, Tenth intercostal nerve, Third intercostal nerve
T1-T11 spinal cord to innermost intercostal muscle via T1-T11 intercostal nerves
In human, the connection goes from T1 segment of thoracic spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T2 segment of thoracic spinal cord or T3 segment of thoracic spinal cord or T4 segment of thoracic spinal cord or T5 segment of thoracic spinal cord or T6 segment of thoracic spinal cord or T7 segment of thoracic spinal cord or T8 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to innermost intercostal muscle via Eighth intercostal nerve, Eleventh intercostal nerve, Fifth intercostal nerve, First intercostal nerve, Fourth intercostal nerve, Ninth intercostal nerve, Second intercostal nerve, Seventh intercostal nerve, Sixth intercostal nerve, Tenth intercostal nerve, Third intercostal nerve. This motor connection projects from the T1 segment of thoracic spinal cord, T2 segment of thoracic spinal cord, T3 segment of thoracic spinal cord, T4 segment of thoracic spinal cord, T5 segment of thoracic spinal cord, T6 segment of thoracic spinal cord, T7 segment of thoracic spinal cord, T8 segment of thoracic spinal cord, T9 segment of thoracic spinal cord, T10 segment of thoracic spinal cord and T11 segment of thoracic spinal cord.
T1 segment of thoracic spinal cord T10 segment of thoracic spinal cord T11 segment of thoracic spinal cord T2 segment of thoracic spinal cord T3 segment of thoracic spinal cord T4 segment of thoracic spinal cord T5 segment of thoracic spinal cord T6 segment of thoracic spinal cord T7 segment of thoracic spinal cord T8 segment of thoracic spinal cord T9 segment of thoracic spinal cord (with-axons-in Eighth intercostal nerve Eleventh intercostal nerve Fifth intercostal nerve First intercostal nerve Fourth intercostal nerve Ninth intercostal nerve Second intercostal nerve Seventh intercostal nerve Sixth intercostal nerve Tenth intercostal nerve Third intercostal nerve) (with-axon-presynaptic-element-in innermost intercostal muscle) (implies Homo sapiens motor neuron)
from T1 segment of thoracic spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T2 segment of thoracic spinal cord or T3 segment of thoracic spinal cord or T4 segment of thoracic spinal cord or T5 segment of thoracic spinal cord or T6 segment of thoracic spinal cord or T7 segment of thoracic spinal cord or T8 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to innermost intercostal muscle via Eighth intercostal nerve, Eleventh intercostal nerve, Fifth intercostal nerve, First intercostal nerve, Fourth intercostal nerve, Ninth intercostal nerve, Second intercostal nerve, Seventh intercostal nerve, Sixth intercostal nerve, Tenth intercostal nerve, Third intercostal nerve
ignore my comment below. there's no T12 to include.\nShould this be subcostal nerve = http://uri.interlex.org/base/ilx_0746880= instead of T12 nerve?
T2-T6 spinal cord to transversus thoracis muscle via intercostal nerves
In human, the connection goes from T2 segment of thoracic spinal cord or T3 segment of thoracic spinal cord or T4 segment of thoracic spinal cord or T5 segment of thoracic spinal cord or T6 segment of thoracic spinal cord to transversus thoracis via Fifth intercostal nerve, Fourth intercostal nerve, Second intercostal nerve, Sixth intercostal nerve, Third intercostal nerve. This motor connection projects from the T2 segment of thoracic spinal cord, T3 segment of thoracic spinal cord, T4 segment of thoracic spinal cord, T5 segment of thoracic spinal cord and T6 segment of thoracic spinal cord.
T2 segment of thoracic spinal cord T3 segment of thoracic spinal cord T4 segment of thoracic spinal cord T5 segment of thoracic spinal cord T6 segment of thoracic spinal cord (with-axons-in Fifth intercostal nerve Fourth intercostal nerve Second intercostal nerve Sixth intercostal nerve Third intercostal nerve) (with-axon-presynaptic-element-in transversus thoracis) (implies Homo sapiens motor neuron)
from T2 segment of thoracic spinal cord or T3 segment of thoracic spinal cord or T4 segment of thoracic spinal cord or T5 segment of thoracic spinal cord or T6 segment of thoracic spinal cord to transversus thoracis via Fifth intercostal nerve, Fourth intercostal nerve, Second intercostal nerve, Sixth intercostal nerve, Third intercostal nerve
S2-S4 spinal cord to ischiocavernosus muscle via pudendal nerve
In human, the connection goes from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to ischiocavernosus muscle via pudendal nerve. This motor connection projects from the S4 segment of sacral spinal cord, S2 segment of sacral spinal cord and S3 segment of sacral spinal cord.
S2 segment of sacral spinal cord S3 segment of sacral spinal cord S4 segment of sacral spinal cord (with-axon-in pudendal nerve) (with-axon-presynaptic-element-in ischiocavernosus muscle) (implies Homo sapiens motor neuron)
from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to ischiocavernosus muscle via pudendal nerve
S2-S4 spinal cord to bulbospongiosus muscle via pudendal nerve
In human, the connection goes from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to bulbospongiosus muscle via pudendal nerve. This motor connection projects from the S4 segment of sacral spinal cord, S2 segment of sacral spinal cord and S3 segment of sacral spinal cord.
S2 segment of sacral spinal cord S3 segment of sacral spinal cord S4 segment of sacral spinal cord (with-axon-in pudendal nerve) (with-axon-presynaptic-element-in bulbospongiosus muscle) (implies Homo sapiens motor neuron)
from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to bulbospongiosus muscle via pudendal nerve
S2-S4 spinal cord to superficial transverse perineal muscle via pudendal nerve
In human, the connection goes from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to superficial transverse perineal muscle via pudendal nerve. This motor connection projects from the S4 segment of sacral spinal cord, S2 segment of sacral spinal cord and S3 segment of sacral spinal cord.
S2 segment of sacral spinal cord S3 segment of sacral spinal cord S4 segment of sacral spinal cord (with-axon-in pudendal nerve) (with-axon-presynaptic-element-in superficial transverse perineal muscle) (implies Homo sapiens motor neuron)
from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to superficial transverse perineal muscle via pudendal nerve
this missing entity has been deleted. what next?
S2-S4 spinal cord to deep part of external anal sphincter via pudendal nerve (S2-S3) and branches directly from S4
In human, the connection goes from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to deep part of external anal sphincter via Fourth sacral nerve, pudendal nerve. This motor connection projects from the S4 segment of sacral spinal cord, S2 segment of sacral spinal cord and S3 segment of sacral spinal cord.
S2 segment of sacral spinal cord S3 segment of sacral spinal cord S4 segment of sacral spinal cord (with-axons-in Fourth sacral nerve pudendal nerve) (with-axon-presynaptic-element-in deep part of external anal sphincter) (implies Homo sapiens motor neuron)
from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to deep part of external anal sphincter via Fourth sacral nerve, pudendal nerve
@ilias, i think that this matches what Tom described yesterday, to wit: "if they don't actively say that routing is confined to a level with no crossing between levels then then absense of that statement would count as support for crossing" If you agree, please remove the ALERT- spinal segemental routing tag.
S2-S4 spinal cord to superficial part of external anal sphincter via pudendal nerve (S2-S3) and branches directly from S4
In human, the connection goes from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to superficial part of external anal sphincter via Fourth sacral nerve, pudendal nerve. This motor connection projects from the S4 segment of sacral spinal cord, S2 segment of sacral spinal cord and S3 segment of sacral spinal cord.
For this part of external anal sphincter the source textbook did not mention if the origin of the innervation is same as the deep part of the muscle.
S2 segment of sacral spinal cord S3 segment of sacral spinal cord S4 segment of sacral spinal cord (with-axons-in Fourth sacral nerve pudendal nerve) (with-axon-presynaptic-element-in superficial part of external anal sphincter) (implies Homo sapiens motor neuron)
from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to superficial part of external anal sphincter via Fourth sacral nerve, pudendal nerve
@ilias, i think that this matches what Tom described yesterday, to wit: "if they don't actively say that routing is confined to a level with no crossing between levels then then absense of that statement would count as support for crossing" If you agree, please remove the tag: ALERT - spinal segmental routing visualization. thanks!
S2-S4 spinal cord to subcutaneous part of external anal sphincter via pudendal nerve (S2-S3) and branches directly from S4
In human, the connection goes from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to subcutaneous part of external anal sphincter via Fourth sacral nerve, pudendal nerve. This motor connection projects from the S4 segment of sacral spinal cord, S2 segment of sacral spinal cord and S3 segment of sacral spinal cord.
S2 segment of sacral spinal cord S3 segment of sacral spinal cord S4 segment of sacral spinal cord (with-axons-in Fourth sacral nerve pudendal nerve) (with-axon-presynaptic-element-in subcutaneous part of external anal sphincter) (implies Homo sapiens motor neuron)
from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to subcutaneous part of external anal sphincter via Fourth sacral nerve, pudendal nerve
S2-S4 spinal cord to external anal sphincter via inferior rectal branches of the pudendal nerve (S2-S3) or branches directly from the anterior ramus of S4
In human, the connection goes from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to external anal sphincter via Anterior ramus of fourth sacral nerve, Inferior rectal nerve plexus. This motor connection projects from the S4 segment of sacral spinal cord, S2 segment of sacral spinal cord and S3 segment of sacral spinal cord.
S2 segment of sacral spinal cord S3 segment of sacral spinal cord S4 segment of sacral spinal cord (with-axons-in Anterior ramus of fourth sacral nerve Inferior rectal nerve plexus) (with-axon-presynaptic-element-in external anal sphincter) (implies Homo sapiens motor neuron)
from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to external anal sphincter via Anterior ramus of fourth sacral nerve, Inferior rectal nerve plexus
Says Inferior rectal nerve plexus / http://uri.interlex.org/base/ilx_0773631 already exists in anatomical entity table, but I can't call it up
S2-S4 dorsal root ganglia with axon sensory terminal in most skin of the perineum or penis via pudendal nerve with axon terminal in S2-S4 spinal cord via S2-S4 dorsal roots of spinal cord
In male human, the connection goes from fourth sacral spinal ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord via Posterior root of fourth sacral nerve, Posterior root of second sacral nerve, Posterior root of third sacral nerve; from fourth sacral spinal ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to skin of penis or skin of the perineum via pudendal nerve. This sensory connection projects from the fourth sacral spinal ganglion, second sacral dorsal root ganglion and third sacral dorsal root ganglion.
male fourth sacral spinal ganglion second sacral dorsal root ganglion third sacral dorsal root ganglion (with-axons-in Posterior root of fourth sacral nerve Posterior root of second sacral nerve Posterior root of third sacral nerve) (with-axon-presynaptic-element-in S2 segment of sacral spinal cord S3 segment of sacral spinal cord S4 segment of sacral spinal cord) (implies Homo sapiens sensory neuron)
from fourth sacral spinal ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord via Posterior root of fourth sacral nerve, Posterior root of second sacral nerve, Posterior root of third sacral nerve from fourth sacral spinal ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to skin of penis or skin of the perineum via pudendal nerve
Added alert "Only in males"\nupdated to include pudendal nerve as axon leading to sensory terminal\nThe population was split in 2 because of sex difference\nupdated to remove "dorsal root of spinal cord" in favor of segment specific posterior roots, per Ilias.\nShould this be 2 populations based on sex-specific anatomy terms?
S2-S4 dorsal root ganglia with axon sensory terminal in most skin of the perineum or clitoris via pudendal nerve with axon terminal in S2-S4 spinal cord via S2-S4 dorsal roots of spinal cord
In female human, the connection goes from fourth sacral spinal ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord via Posterior root of fourth sacral nerve, Posterior root of second sacral nerve, Posterior root of third sacral nerve; from fourth sacral spinal ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to skin of clitoris or skin of the perineum via pudendal nerve. This sensory connection projects from the fourth sacral spinal ganglion, second sacral dorsal root ganglion and third sacral dorsal root ganglion.
from fourth sacral spinal ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord via Posterior root of fourth sacral nerve, Posterior root of second sacral nerve, Posterior root of third sacral nerve from fourth sacral spinal ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to skin of clitoris or skin of the perineum via pudendal nerve
updated to include pudendal nerve as axon leading to sensory terminal.
S2-S4 spinal cord to external urethral sphincter via perineal nerve
In human, the connection goes from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to external urethral sphincter via perineal nerve. This motor connection projects from the S4 segment of sacral spinal cord, S2 segment of sacral spinal cord and S3 segment of sacral spinal cord.
S2 segment of sacral spinal cord S3 segment of sacral spinal cord S4 segment of sacral spinal cord (with-axon-in perineal nerve) (with-axon-presynaptic-element-in external urethral sphincter) (implies Homo sapiens motor neuron)
from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to external urethral sphincter via perineal nerve
musculus sphincter urethrae membranaceae
S2-S4 spinal cord to compressor urethrae muscle via perineal nerve
In female human, the connection goes from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to female external urethral sphincter via perineal nerve. This motor connection projects from the S4 segment of sacral spinal cord, S2 segment of sacral spinal cord and S3 segment of sacral spinal cord.
female S2 segment of sacral spinal cord S3 segment of sacral spinal cord S4 segment of sacral spinal cord (with-axon-in perineal nerve) (with-axon-presynaptic-element-in female external urethral sphincter) (implies Homo sapiens motor neuron)
from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to female external urethral sphincter via perineal nerve
external urethral sphincter of female urethra
musculus sphincter urethrae externus (urethra feminina)
musculus sphincter urethrae externus urethrae femininae
S2-S4 spinal cord to deep transverse perineal muscle via perineal nerve
In male human, the connection goes from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to deep transverse perineal muscle via perineal nerve. This motor connection projects from the S4 segment of sacral spinal cord, S2 segment of sacral spinal cord and S3 segment of sacral spinal cord.
male S2 segment of sacral spinal cord S3 segment of sacral spinal cord S4 segment of sacral spinal cord (with-axon-in perineal nerve) (with-axon-presynaptic-element-in deep transverse perineal muscle) (implies Homo sapiens motor neuron)
from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to deep transverse perineal muscle via perineal nerve
S2-S4 spinal cord to skeletal muscles in the perineum (including the external urethral and anal sphincters and levator ani) via branches direct from the anterior ramus of S4 OR by the inferior rectal branch of the pudendal nerve
In human, the connection goes from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to musculature of perineum via Anterior ramus of fourth sacral nerve, Inferior rectal nerve plexus. This motor connection projects from the S4 segment of sacral spinal cord, S2 segment of sacral spinal cord and S3 segment of sacral spinal cord.
The A2BvC doesn't have the S2 or S3 anterior rami as a via; but they are in the import from SCKAN. https://docs.google.com/spreadsheets/d/14OdG9uliJAgtarcHGwjfrYrvHGfkylwhxKyiHF6ftIM/edit?gid=0#gid=0&range=C905 . Spreadsheet also doesn't include the specific muscles mentioned in the A2BvC.
S2 segment of sacral spinal cord S3 segment of sacral spinal cord S4 segment of sacral spinal cord (with-axons-in Anterior ramus of fourth sacral nerve Inferior rectal nerve plexus) (with-axon-presynaptic-element-in musculature of perineum) (implies Homo sapiens motor neuron)
from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to musculature of perineum via Anterior ramus of fourth sacral nerve, Inferior rectal nerve plexus
The muscles in the parenthesis are part of the big term added\nedited to stick with the label.\nhttps://docs.google.com/spreadsheets/d/14OdG9uliJAgtarcHGwjfrYrvHGfkylwhxKyiHF6ftIM/edit?gid=0#gid=0&range=C905 This population doesn't include the specific muscles noted in the A2BvC; and also, the A2BvC doesn't mention S2 or S3 anterior branches.\nThe A2BvC doesn't have the S2 or S3 anterior rami as a via; but they are in the import from SCKAN.
S3-S4 spinal cord to coccygeus muscle via branches from the anterior rami of S3-S4
In human, the connection goes from S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to coccygeus muscle via Anterior ramus of fourth sacral nerve, Anterior ramus of third sacral nerve. This motor connection projects from the S4 segment of sacral spinal cord and S3 segment of sacral spinal cord.
S3 segment of sacral spinal cord S4 segment of sacral spinal cord (with-axons-in Anterior ramus of fourth sacral nerve Anterior ramus of third sacral nerve) (with-axon-presynaptic-element-in coccygeus muscle) (implies Homo sapiens motor neuron)
from S3 segment of sacral spinal cord or S4 segment of sacral spinal cord to coccygeus muscle via Anterior ramus of fourth sacral nerve, Anterior ramus of third sacral nerve
L5-S1 spinal cord to obturator internus muscle via nerve to obturator internus
In human, the connection goes from L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to obturator internus via nerve to obturator internus. This motor connection projects from the S1 segment of sacral spinal cord and L5 segment of lumbar spinal cord.
L5 segment of lumbar spinal cord S1 segment of sacral spinal cord (with-axon-in nerve to obturator internus) (with-axon-presynaptic-element-in obturator internus) (implies Homo sapiens motor neuron)
from L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to obturator internus via nerve to obturator internus
S1-S2 spinal cord to piriformis muscle via nerve branches from S1-S2
In human, the connection goes from S1 segment of sacral spinal cord or S2 segment of sacral spinal cord to piriformis muscle via First sacral nerve, Second sacral nerve. This motor connection projects from the S2 segment of sacral spinal cord and S1 segment of sacral spinal cord.
S1 segment of sacral spinal cord S2 segment of sacral spinal cord (with-axons-in First sacral nerve Second sacral nerve) (with-axon-presynaptic-element-in piriformis muscle) (implies Homo sapiens motor neuron)
from S1 segment of sacral spinal cord or S2 segment of sacral spinal cord to piriformis muscle via First sacral nerve, Second sacral nerve
T7-T12 spinal cord to abdominal external oblique muscle via anterior rami of lower six thoracic spinal nerves (T7 to T12)
In human, the connection goes from T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord or T7 segment of thoracic spinal cord or T8 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to abdominal external oblique muscle via Eighth intercostal nerve, Eleventh intercostal nerve, Ninth intercostal nerve, Seventh intercostal nerve, Tenth intercostal nerve, subcostal nerve. This motor connection projects from the T7 segment of thoracic spinal cord, T8 segment of thoracic spinal cord, T9 segment of thoracic spinal cord, T10 segment of thoracic spinal cord, T11 segment of thoracic spinal cord and T12 segment of thoracic spinal cord.
T10 segment of thoracic spinal cord T11 segment of thoracic spinal cord T12 segment of thoracic spinal cord T7 segment of thoracic spinal cord T8 segment of thoracic spinal cord T9 segment of thoracic spinal cord (with-axons-in Eighth intercostal nerve Eleventh intercostal nerve Ninth intercostal nerve Seventh intercostal nerve Tenth intercostal nerve subcostal nerve (TA98)) (with-axon-presynaptic-element-in abdominal external oblique muscle) (implies Homo sapiens motor neuron)
from T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord or T7 segment of thoracic spinal cord or T8 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to abdominal external oblique muscle via Eighth intercostal nerve, Eleventh intercostal nerve, Ninth intercostal nerve, Seventh intercostal nerve, Tenth intercostal nerve, subcostal nerve
Changed T12 spinal nerve to subcostal nerve.\nsubcostal nerve = http://uri.interlex.org/base/ilx_0746880\n(or the subcostal nerve)?\ni think we need a twelfth thoracic intercostal nerve (anterior ramus), not solely T12 nerve. correct?
T7-L1 spinal cord to abdominal internal oblique muscle via anterior rami of lower six thoracic spinal nerves (T7 to T12) and L1
In human, the connection goes from L1 segment of lumbar spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord or T7 segment of thoracic spinal cord or T8 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to abdominal internal oblique muscle via Anterior ramus of first lumbar nerve, Eighth intercostal nerve, Eleventh intercostal nerve, Ninth intercostal nerve, Seventh intercostal nerve, Tenth intercostal nerve, subcostal nerve. This motor connection projects from the L1 segment of lumbar spinal cord, T7 segment of thoracic spinal cord, T8 segment of thoracic spinal cord, T9 segment of thoracic spinal cord, T10 segment of thoracic spinal cord, T11 segment of thoracic spinal cord and T12 segment of thoracic spinal cord.
I think this should be http://uri.interlex.org/base/ilx_0785421 (ventral/anterior root of L1) not
L1 segment of lumbar spinal cord T10 segment of thoracic spinal cord T11 segment of thoracic spinal cord T12 segment of thoracic spinal cord T7 segment of thoracic spinal cord T8 segment of thoracic spinal cord T9 segment of thoracic spinal cord (with-axons-in Anterior ramus of first lumbar nerve Eighth intercostal nerve Eleventh intercostal nerve Ninth intercostal nerve Seventh intercostal nerve Tenth intercostal nerve subcostal nerve (TA98)) (with-axon-presynaptic-element-in abdominal internal oblique muscle) (implies Homo sapiens motor neuron)
from L1 segment of lumbar spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord or T7 segment of thoracic spinal cord or T8 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to abdominal internal oblique muscle via Anterior ramus of first lumbar nerve, Eighth intercostal nerve, Eleventh intercostal nerve, Ninth intercostal nerve, Seventh intercostal nerve, Tenth intercostal nerve, subcostal nerve
I added subcostal nerve and Anterior ramus of first lumbar nerve http://uri.interlex.org/base/ilx_0791390.\nRegarding the anterior rami of the spinal nerve: At this point, we don't need to change these. The claim that the via is the spinal nerves is not incorrect, the anterior ramus is one of the two branches and this granularity we kept for many other NLP populations. The root of the spinal nerve exists in ILX but the ventral (anterior rami) that I mention in the label do not exist right now. Once we have all of these neurons in Composer and we want to make this change I will create the terms and change them only there and not also in the spreadsheets.\nI think it should be Anterior root of L1, http://uri.interlex.org/base/ilx_0785421, not L1 nerve: http://uri.interlex.org/base/ilx_0788972; but this matches SCKAN/spreadsheet.
T7-L1 spinal cord to transversus abdominis muscle via anterior rami of lower six thoracic spinal nerves (T7 to T12) and L1
In human, the connection goes from L1 segment of lumbar spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord or T7 segment of thoracic spinal cord or T8 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to transversus abdominis muscle via Eighth intercostal nerve, Eleventh intercostal nerve, First lumbar nerve, Ninth intercostal nerve, Seventh intercostal nerve, Tenth intercostal nerve, subcostal nerve. This motor connection projects from the L1 segment of lumbar spinal cord, T7 segment of thoracic spinal cord, T8 segment of thoracic spinal cord, T9 segment of thoracic spinal cord, T10 segment of thoracic spinal cord, T11 segment of thoracic spinal cord and T12 segment of thoracic spinal cord.
L1 segment of lumbar spinal cord T10 segment of thoracic spinal cord T11 segment of thoracic spinal cord T12 segment of thoracic spinal cord T7 segment of thoracic spinal cord T8 segment of thoracic spinal cord T9 segment of thoracic spinal cord (with-axons-in Eighth intercostal nerve Eleventh intercostal nerve First lumbar nerve Ninth intercostal nerve Seventh intercostal nerve Tenth intercostal nerve subcostal nerve (TA98)) (with-axon-presynaptic-element-in transversus abdominis muscle) (implies Homo sapiens motor neuron)
from L1 segment of lumbar spinal cord or T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord or T7 segment of thoracic spinal cord or T8 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to transversus abdominis muscle via Eighth intercostal nerve, Eleventh intercostal nerve, First lumbar nerve, Ninth intercostal nerve, Seventh intercostal nerve, Tenth intercostal nerve, subcostal nerve
Need to add subcostal nerve to interlex?\nI can't add http://uri.interlex.org/base/ilx_0787969 to the entity table even though it says it exists, it can't be displayed when searching.
T7-T12 spinal cord to rectus abdominis muscle via anterior rami of lower seven thoracic spinal nerves (T7 to T12)
In human, the connection goes from T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord or T7 segment of thoracic spinal cord or T8 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to rectus abdominis muscle via Eighth intercostal nerve, Eleventh intercostal nerve, Ninth intercostal nerve, Seventh intercostal nerve, Tenth intercostal nerve, subcostal nerve. This motor connection projects from the T7 segment of thoracic spinal cord, T8 segment of thoracic spinal cord, T9 segment of thoracic spinal cord, T10 segment of thoracic spinal cord, T11 segment of thoracic spinal cord and T12 segment of thoracic spinal cord.
T10 segment of thoracic spinal cord T11 segment of thoracic spinal cord T12 segment of thoracic spinal cord T7 segment of thoracic spinal cord T8 segment of thoracic spinal cord T9 segment of thoracic spinal cord (with-axons-in Eighth intercostal nerve Eleventh intercostal nerve Ninth intercostal nerve Seventh intercostal nerve Tenth intercostal nerve subcostal nerve (TA98)) (with-axon-presynaptic-element-in rectus abdominis muscle) (implies Homo sapiens motor neuron)
from T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord or T7 segment of thoracic spinal cord or T8 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to rectus abdominis muscle via Eighth intercostal nerve, Eleventh intercostal nerve, Ninth intercostal nerve, Seventh intercostal nerve, Tenth intercostal nerve, subcostal nerve
T12 spinal cord to pyramidalis muscle via anterior ramus of T12
In human, the connection goes from T12 segment of thoracic spinal cord to pyramidalis via Twelfth thoracic nerve. This motor connection projects from the T12 segment of thoracic spinal cord.
This via really should be the 12th intercostal nerve tho. Since the notes say anterior ramus of the 12th thoracic. This is currently modeled according to what was in SCKAN (and then ingested into Composer)
T12 segment of thoracic spinal cord (with-axon-in Twelfth thoracic nerve) (with-axon-presynaptic-element-in pyramidalis) (implies Homo sapiens motor neuron)
from T12 segment of thoracic spinal cord to pyramidalis via Twelfth thoracic nerve
This via really should be the 12th intercostal nerve tho. Since the notes say anterior ramus of the 12th thoracic\nJust updated this via to include the updated anatomical entity; this population was flagged by Tom in the SCKAN round trip.
L1-L2 spinal cord to psoas major muscle via anterior rami of L1 and L2 nerves
In human, the connection goes from L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord to psoas major muscle via Anterior ramus of second lumbar nerve, First lumbar nerve. This motor connection projects from the L2 segment of lumbar spinal cord and L1 segment of lumbar spinal cord.
L1 segment of lumbar spinal cord L2 segment of lumbar spinal cord (with-axons-in Anterior ramus of second lumbar nerve First lumbar nerve) (with-axon-presynaptic-element-in psoas major muscle) (implies Homo sapiens motor neuron)
from L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord to psoas major muscle via Anterior ramus of second lumbar nerve, First lumbar nerve
This had an incomplete curator statement. I got the predicates by looking at the SENMOT sheet. Should it be updated to, "L1-L2 spinal cord to psoas major muscle via anterior rami of L1 and L2 nerves" ?
L1 spinal cord to psoas minor muscle via anterior rami of L1
In human, the connection goes from L1 segment of lumbar spinal cord to psoas minor muscle via First lumbar nerve. This motor connection projects from the L1 segment of lumbar spinal cord.
L1 segment of lumbar spinal cord (with-axon-in First lumbar nerve) (with-axon-presynaptic-element-in psoas minor muscle) (implies Homo sapiens motor neuron)
from L1 segment of lumbar spinal cord to psoas minor muscle via First lumbar nerve
T12-L4 spinal cord to quadratus lumborum muscle via anterior rami of T12-L4
In human, the connection goes from L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord or T12 segment of thoracic spinal cord to quadratus lumborum via Anterior ramus of fourth lumbar nerve, Anterior ramus of second lumbar nerve, Anterior ramus of third lumbar nerve, First lumbar nerve, subcostal nerve. This motor connection projects from the L2 segment of lumbar spinal cord, L1 segment of lumbar spinal cord, T12 segment of thoracic spinal cord, L3 segment of lumbar spinal cord and L4 segment of lumbar spinal cord.
L1 segment of lumbar spinal cord L2 segment of lumbar spinal cord L3 segment of lumbar spinal cord L4 segment of lumbar spinal cord T12 segment of thoracic spinal cord (with-axons-in Anterior ramus of fourth lumbar nerve Anterior ramus of second lumbar nerve Anterior ramus of third lumbar nerve First lumbar nerve subcostal nerve (TA98)) (with-axon-presynaptic-element-in quadratus lumborum) (implies Homo sapiens motor neuron)
from L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord or T12 segment of thoracic spinal cord to quadratus lumborum via Anterior ramus of fourth lumbar nerve, Anterior ramus of second lumbar nerve, Anterior ramus of third lumbar nerve, First lumbar nerve, subcostal nerve
missing L3 and L4 spinal nerve for some reason.
L2-L4 spinal cord to iliacus muscle via femoral nerve
In human, the connection goes from L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord to iliacus muscle via femoral nerve. This motor connection projects from the L2 segment of lumbar spinal cord, L3 segment of lumbar spinal cord and L4 segment of lumbar spinal cord.
L2 segment of lumbar spinal cord L3 segment of lumbar spinal cord L4 segment of lumbar spinal cord (with-axon-in femoral nerve) (with-axon-presynaptic-element-in iliacus muscle) (implies Homo sapiens motor neuron)
from L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord to iliacus muscle via femoral nerve
C7 spinal cord to latissimus dorsi muscle via thoracodorsal (middle subscapular) nerve
In human, the connection goes from C7 segment of cervical spinal cord to latissimus dorsi muscle via Thoracodorsal nerve component of C7 nerve. This motor connection projects from the C7 segment of cervical spinal cord.
C7 segment of cervical spinal cord (with-axon-in Thoracodorsal nerve component of C7 nerve) (with-axon-presynaptic-element-in latissimus dorsi muscle) (implies Homo sapiens motor neuron)
from C7 segment of cervical spinal cord to latissimus dorsi muscle via Thoracodorsal nerve component of C7 nerve
added an alert\nThe thoracodorsal nerve and the middle subscapular nerve are actually the same nerve, just referred to differently in anatomical contexts.
T2-T5 spinal cord to serratus posterior superior muscle via anterior rami of upper thoracic nerves (T2 to T5)
In human, the connection goes from T2 segment of thoracic spinal cord or T3 segment of thoracic spinal cord or T4 segment of thoracic spinal cord or T5 segment of thoracic spinal cord to serratus posterior superior muscle via Fifth intercostal nerve, Fourth intercostal nerve, Second intercostal nerve, Third intercostal nerve. This motor connection projects from the T2 segment of thoracic spinal cord, T3 segment of thoracic spinal cord, T4 segment of thoracic spinal cord and T5 segment of thoracic spinal cord.
T2 segment of thoracic spinal cord T3 segment of thoracic spinal cord T4 segment of thoracic spinal cord T5 segment of thoracic spinal cord (with-axons-in Fifth intercostal nerve Fourth intercostal nerve Second intercostal nerve Third intercostal nerve) (with-axon-presynaptic-element-in serratus posterior superior muscle) (implies Homo sapiens motor neuron)
from T2 segment of thoracic spinal cord or T3 segment of thoracic spinal cord or T4 segment of thoracic spinal cord or T5 segment of thoracic spinal cord to serratus posterior superior muscle via Fifth intercostal nerve, Fourth intercostal nerve, Second intercostal nerve, Third intercostal nerve
T9-T12 spinal cord to serratus posterior inferior muscle via anterior rami of lower thoracic nerves (T9 to T12)
In human, the connection goes from T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to serratus dorsalis inferior muscle via Eleventh intercostal nerve, Ninth intercostal nerve, Tenth intercostal nerve, subcostal nerve. This motor connection projects from the T9 segment of thoracic spinal cord, T10 segment of thoracic spinal cord, T11 segment of thoracic spinal cord and T12 segment of thoracic spinal cord.
T10 segment of thoracic spinal cord T11 segment of thoracic spinal cord T12 segment of thoracic spinal cord T9 segment of thoracic spinal cord (with-axons-in Eleventh intercostal nerve Ninth intercostal nerve Tenth intercostal nerve subcostal nerve (TA98)) (with-axon-presynaptic-element-in serratus dorsalis inferior muscle) (implies Homo sapiens motor neuron)
from T10 segment of thoracic spinal cord or T11 segment of thoracic spinal cord or T12 segment of thoracic spinal cord or T9 segment of thoracic spinal cord to serratus dorsalis inferior muscle via Eleventh intercostal nerve, Ninth intercostal nerve, Tenth intercostal nerve, subcostal nerve
Yes, it is the right term, You can see the synonyms and that UBERON is cross-referenced to the ILX link http://uri.interlex.org/base/ilx_0728645.\nthe ilx (http://uri.interlex.org/base/ilx_0728645) doesn't provide the same synonyms as the UBERON:0011217 ...but this is modeled accurately using the UBERON term.\nThis destination is serratus dorsalis muscle (syn: serratus posterior) not explicitly serratus posterior inferior. still correct?
C3-C4 spinal cord to splenius capitis muscle via posterior rami middle cervical nerves of C3 and C4
In human, the connection goes from C3 segment of cervical spinal cord or C4 segment of cervical spinal cord to splenius capitis via Posterior ramus of fourth cervical nerve, Posterior ramus of third cervical nerve. This motor connection projects from the C3 segment of cervical spinal cord and C4 segment of cervical spinal cord.
C3 segment of cervical spinal cord C4 segment of cervical spinal cord (with-axons-in Posterior ramus of fourth cervical nerve Posterior ramus of third cervical nerve) (with-axon-presynaptic-element-in splenius capitis) (implies Homo sapiens motor neuron)
from C3 segment of cervical spinal cord or C4 segment of cervical spinal cord to splenius capitis via Posterior ramus of fourth cervical nerve, Posterior ramus of third cervical nerve
T3-T6 spinal cord to splenius cervicis via posterior rami lower cervical nerves
In human, the connection goes from T3 segment of thoracic spinal cord or T4 segment of thoracic spinal cord or T5 segment of thoracic spinal cord or T6 segment of thoracic spinal cord to splenius cervicis via posterior rami lower cervical nerves. This motor connection projects from the T3 segment of thoracic spinal cord, T4 segment of thoracic spinal cord, T5 segment of thoracic spinal cord and T6 segment of thoracic spinal cord.
T3 segment of thoracic spinal cord T4 segment of thoracic spinal cord T5 segment of thoracic spinal cord T6 segment of thoracic spinal cord (with-axon-in posterior rami lower cervical nerves) (with-axon-presynaptic-element-in splenius cervicis) (implies Homo sapiens motor neuron)
from T3 segment of thoracic spinal cord or T4 segment of thoracic spinal cord or T5 segment of thoracic spinal cord or T6 segment of thoracic spinal cord to splenius cervicis via posterior rami lower cervical nerves
C1 spinal cord to rectus capitis posterior major muscle via posterior ramus of C1 (Suboccipital nerve)
In human, the connection goes from C1 segment of cervical spinal cord to rectus capitis posterior major via Suboccipital nerve. This motor connection projects from the C1 segment of cervical spinal cord.
C1 segment of cervical spinal cord (with-axon-in Suboccipital nerve) (with-axon-presynaptic-element-in rectus capitis posterior major) (implies Homo sapiens motor neuron)
from C1 segment of cervical spinal cord to rectus capitis posterior major via Suboccipital nerve
C1 spinal cord to rectus capitis posterior minor muscle via posterior ramus of C1 (Suboccipital nerve)
In human, the connection goes from C1 segment of cervical spinal cord to rectus capitis posterior minor via Suboccipital nerve. This motor connection projects from the C1 segment of cervical spinal cord.
C1 segment of cervical spinal cord (with-axon-in Suboccipital nerve) (with-axon-presynaptic-element-in rectus capitis posterior minor) (implies Homo sapiens motor neuron)
from C1 segment of cervical spinal cord to rectus capitis posterior minor via Suboccipital nerve
C1 spinal cord to obliquus capitis superior muscle via posterior ramus of C1 (Suboccipital nerve)
In human, the connection goes from C1 segment of cervical spinal cord to obliquus capitis superior muscle via Suboccipital nerve. This motor connection projects from the C1 segment of cervical spinal cord.
C1 segment of cervical spinal cord (with-axon-in Suboccipital nerve) (with-axon-presynaptic-element-in obliquus capitis superior muscle) (implies Homo sapiens motor neuron)
from C1 segment of cervical spinal cord to obliquus capitis superior muscle via Suboccipital nerve
C1 spinal cord to obliquus capitis inferior muscle via posterior ramus of C1 (Suboccipital nerve)
In human, the connection goes from C1 segment of cervical spinal cord to obliquus capitis inferior muscle via Suboccipital nerve. This motor connection projects from the C1 segment of cervical spinal cord.
C1 segment of cervical spinal cord (with-axon-in Suboccipital nerve) (with-axon-presynaptic-element-in obliquus capitis inferior muscle) (implies Homo sapiens motor neuron)
from C1 segment of cervical spinal cord to obliquus capitis inferior muscle via Suboccipital nerve
L5-S1 spinal cord to gemellus superior muscle via nerve to obturator internus
In human, the connection goes from L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to superior gemellus muscle via nerve to obturator internus. This motor connection projects from the S1 segment of sacral spinal cord and L5 segment of lumbar spinal cord.
L5 segment of lumbar spinal cord S1 segment of sacral spinal cord (with-axon-in nerve to obturator internus) (with-axon-presynaptic-element-in superior gemellus muscle) (implies Homo sapiens motor neuron)
from L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to superior gemellus muscle via nerve to obturator internus
L5-S1 spinal cord to gemellus inferior muscle via nerve to quadratus femoris
In human, the connection goes from L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to inferior gemellus muscle via nerve to quadratus femoris. This motor connection projects from the S1 segment of sacral spinal cord and L5 segment of lumbar spinal cord.
L5 segment of lumbar spinal cord S1 segment of sacral spinal cord (with-axon-in nerve to quadratus femoris) (with-axon-presynaptic-element-in inferior gemellus muscle) (implies Homo sapiens motor neuron)
from L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to inferior gemellus muscle via nerve to quadratus femoris
nerve to the quadratus femoris and gemellus inferior
L5-S1 spinal cord to quadratus femoris muscle via nerve to quadratus femoris
In human, the connection goes from L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to quadratus femoris via nerve to quadratus femoris. This motor connection projects from the S1 segment of sacral spinal cord and L5 segment of lumbar spinal cord.
L5 segment of lumbar spinal cord S1 segment of sacral spinal cord (with-axon-in nerve to quadratus femoris) (with-axon-presynaptic-element-in quadratus femoris) (implies Homo sapiens motor neuron)
from L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to quadratus femoris via nerve to quadratus femoris
The UBERON ID is cross-referenced and is the preferred term so it is the same. I didn't request this term to be created. It existed.\nthis ILX http://uri.interlex.org/base/ilx_0731180 is a duplicate to the UBERON term included above.
L4-L5 spinal cord to gluteus minimus muscle via superior gluteal nerve
In human, the connection goes from L4 segment of lumbar spinal cord or L5 segment of lumbar spinal cord to gluteus minimus via superior gluteal nerve. This motor connection projects from the L5 segment of lumbar spinal cord and L4 segment of lumbar spinal cord.
L4 segment of lumbar spinal cord L5 segment of lumbar spinal cord (with-axon-in superior gluteal nerve) (with-axon-presynaptic-element-in gluteus minimus) (implies Homo sapiens motor neuron)
from L4 segment of lumbar spinal cord or L5 segment of lumbar spinal cord to gluteus minimus via superior gluteal nerve
L4-L5 spinal cord to gluteus medius muscle via superior gluteal nerve
In human, the connection goes from L4 segment of lumbar spinal cord or L5 segment of lumbar spinal cord to gluteus medius via superior gluteal nerve. This motor connection projects from the L5 segment of lumbar spinal cord and L4 segment of lumbar spinal cord.
L4 segment of lumbar spinal cord L5 segment of lumbar spinal cord (with-axon-in superior gluteal nerve) (with-axon-presynaptic-element-in gluteus medius) (implies Homo sapiens motor neuron)
from L4 segment of lumbar spinal cord or L5 segment of lumbar spinal cord to gluteus medius via superior gluteal nerve
L5-S1 spinal cord to gluteus maximus muscle via inferior gluteal nerve
In human, the connection goes from L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to gluteus maximus via inferior gluteal nerve. This motor connection projects from the S1 segment of sacral spinal cord and L5 segment of lumbar spinal cord.
L5 segment of lumbar spinal cord S1 segment of sacral spinal cord (with-axon-in inferior gluteal nerve) (with-axon-presynaptic-element-in gluteus maximus) (implies Homo sapiens motor neuron)
from L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to gluteus maximus via inferior gluteal nerve
updated to add inferior gluteal nerve (bug fixed)\nwhen i try to add the term to the table, it says it already exists.
L4-L5 spinal cord to tensor fasciae latae muscle via superior gluteal nerve
In human, the connection goes from L4 segment of lumbar spinal cord or L5 segment of lumbar spinal cord to tensor fasciae latae muscle via superior gluteal nerve. This motor connection projects from the L5 segment of lumbar spinal cord and L4 segment of lumbar spinal cord.
L4 segment of lumbar spinal cord L5 segment of lumbar spinal cord (with-axon-in superior gluteal nerve) (with-axon-presynaptic-element-in tensor fasciae latae muscle) (implies Homo sapiens motor neuron)
from L4 segment of lumbar spinal cord or L5 segment of lumbar spinal cord to tensor fasciae latae muscle via superior gluteal nerve
L3-L4 spinal cord to vastus medialis muscle via femoral nerve
In human, the connection goes from L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord to vastus medialis via femoral nerve. This motor connection projects from the L3 segment of lumbar spinal cord and L4 segment of lumbar spinal cord.
L3 segment of lumbar spinal cord L4 segment of lumbar spinal cord (with-axon-in femoral nerve) (with-axon-presynaptic-element-in vastus medialis) (implies Homo sapiens motor neuron)
from L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord to vastus medialis via femoral nerve
L3-L4 spinal cord to vastus intermedius muscle via femoral nerve
In human, the connection goes from L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord to vastus intermedius via femoral nerve. This motor connection projects from the L3 segment of lumbar spinal cord and L4 segment of lumbar spinal cord.
L3 segment of lumbar spinal cord L4 segment of lumbar spinal cord (with-axon-in femoral nerve) (with-axon-presynaptic-element-in vastus intermedius) (implies Homo sapiens motor neuron)
from L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord to vastus intermedius via femoral nerve
L3-L4 spinal cord to vastus lateralis muscle via femoral nerve
In human, the connection goes from L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord to vastus lateralis via femoral nerve. This motor connection projects from the L3 segment of lumbar spinal cord and L4 segment of lumbar spinal cord.
L3 segment of lumbar spinal cord L4 segment of lumbar spinal cord (with-axon-in femoral nerve) (with-axon-presynaptic-element-in vastus lateralis) (implies Homo sapiens motor neuron)
from L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord to vastus lateralis via femoral nerve
L3-L4 spinal cord to rectus femoris muscle via femoral nerve
In human, the connection goes from L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord to rectus femoris via femoral nerve. This motor connection projects from the L3 segment of lumbar spinal cord and L4 segment of lumbar spinal cord.
L3 segment of lumbar spinal cord L4 segment of lumbar spinal cord (with-axon-in femoral nerve) (with-axon-presynaptic-element-in rectus femoris) (implies Homo sapiens motor neuron)
from L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord to rectus femoris via femoral nerve
L2-L3 spinal cord to sartorius muscle via femoral nerve
In human, the connection goes from L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord to sartorius muscle via femoral nerve. This motor connection projects from the L2 segment of lumbar spinal cord and L3 segment of lumbar spinal cord.
L2 segment of lumbar spinal cord L3 segment of lumbar spinal cord (with-axon-in femoral nerve) (with-axon-presynaptic-element-in sartorius muscle) (implies Homo sapiens motor neuron)
from L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord to sartorius muscle via femoral nerve
L2 spinal cord to gracilis muscle via obturator nerve
In human, the connection goes from L2 segment of lumbar spinal cord to gracilis via obturator nerve. This motor connection projects from the L2 segment of lumbar spinal cord.
L2 segment of lumbar spinal cord (with-axon-in obturator nerve) (with-axon-presynaptic-element-in gracilis) (implies Homo sapiens motor neuron)
from L2 segment of lumbar spinal cord to gracilis via obturator nerve
L2 spinal cord to pectineus muscle via femoral nerve
In human, the connection goes from L2 segment of lumbar spinal cord to pectineus muscle via femoral nerve. This motor connection projects from the L2 segment of lumbar spinal cord.
L2 segment of lumbar spinal cord (with-axon-in femoral nerve) (with-axon-presynaptic-element-in pectineus muscle) (implies Homo sapiens motor neuron)
from L2 segment of lumbar spinal cord to pectineus muscle via femoral nerve
L2-L3 spinal cord to adductor longus muscle via obturator nerve (anterior division)
In human, the connection goes from L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord to adductor longus via obturator nerve. This motor connection projects from the L2 segment of lumbar spinal cord and L3 segment of lumbar spinal cord.
L2 segment of lumbar spinal cord L3 segment of lumbar spinal cord (with-axon-in obturator nerve) (with-axon-presynaptic-element-in adductor longus) (implies Homo sapiens motor neuron)
from L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord to adductor longus via obturator nerve
L2-L3 spinal cord to adductor brevis muscle via obturator nerve
In human, the connection goes from L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord to adductor brevis via obturator nerve. This motor connection projects from the L2 segment of lumbar spinal cord and L3 segment of lumbar spinal cord.
L2 segment of lumbar spinal cord L3 segment of lumbar spinal cord (with-axon-in obturator nerve) (with-axon-presynaptic-element-in adductor brevis) (implies Homo sapiens motor neuron)
from L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord to adductor brevis via obturator nerve
L2-L3 spinal cord to adductor magnus muscle via obturator nerve
In human, the connection goes from L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord to adductor magnus via obturator nerve. This motor connection projects from the L2 segment of lumbar spinal cord and L3 segment of lumbar spinal cord.
L2 segment of lumbar spinal cord L3 segment of lumbar spinal cord (with-axon-in obturator nerve) (with-axon-presynaptic-element-in adductor magnus) (implies Homo sapiens motor neuron)
from L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord to adductor magnus via obturator nerve
L2-L3 spinal cord to adductor magnus muscle via sciatic nerve (tibial division)
In human, the connection goes from L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord to adductor magnus via tibial nerve. This motor connection projects from the L2 segment of lumbar spinal cord and L3 segment of lumbar spinal cord.
L2 segment of lumbar spinal cord L3 segment of lumbar spinal cord (with-axon-in tibial nerve) (with-axon-presynaptic-element-in adductor magnus) (implies Homo sapiens motor neuron)
from L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord to adductor magnus via tibial nerve
L4 spinal cord to obturator externus via obturator nerve (posterior division)
In human, the connection goes from L4 segment of lumbar spinal cord to obturator externus via obturator nerve. This motor connection projects from the L4 segment of lumbar spinal cord.
L4 segment of lumbar spinal cord (with-axon-in obturator nerve) (with-axon-presynaptic-element-in obturator externus) (implies Homo sapiens motor neuron)
from L4 segment of lumbar spinal cord to obturator externus via obturator nerve
S1 spinal cord to biceps femoris muscle via sciatic nerve
In human, the connection goes from S1 segment of sacral spinal cord to biceps femoris via sciatic nerve. This motor connection projects from the S1 segment of sacral spinal cord.
S1 segment of sacral spinal cord (with-axon-in sciatic nerve) (with-axon-presynaptic-element-in biceps femoris) (implies Homo sapiens motor neuron)
from S1 segment of sacral spinal cord to biceps femoris via sciatic nerve
S1 spinal cord to semitendinosus muscle via sciatic nerve
In human, the connection goes from S1 segment of sacral spinal cord to semitendinosus via sciatic nerve. This motor connection projects from the S1 segment of sacral spinal cord.
S1 segment of sacral spinal cord (with-axon-in sciatic nerve) (with-axon-presynaptic-element-in semitendinosus) (implies Homo sapiens motor neuron)
from S1 segment of sacral spinal cord to semitendinosus via sciatic nerve
S1 spinal cord to semimembranosus muscle via sciatic nerve
In human, the connection goes from S1 segment of sacral spinal cord to semimembranosus muscle via sciatic nerve. This motor connection projects from the S1 segment of sacral spinal cord.
S1 segment of sacral spinal cord (with-axon-in sciatic nerve) (with-axon-presynaptic-element-in semimembranosus muscle) (implies Homo sapiens motor neuron)
from S1 segment of sacral spinal cord to semimembranosus muscle via sciatic nerve
S1-S2 spinal cord to gastrocnemius muscle via tibial nerve
In human, the connection goes from S1 segment of sacral spinal cord or S2 segment of sacral spinal cord to gastrocnemius via tibial nerve. This motor connection projects from the S2 segment of sacral spinal cord and S1 segment of sacral spinal cord.
S1 segment of sacral spinal cord S2 segment of sacral spinal cord (with-axon-in tibial nerve) (with-axon-presynaptic-element-in gastrocnemius) (implies Homo sapiens motor neuron)
from S1 segment of sacral spinal cord or S2 segment of sacral spinal cord to gastrocnemius via tibial nerve
S1-S2 spinal cord to plantaris muscle via tibial nerve
In human, the connection goes from S1 segment of sacral spinal cord or S2 segment of sacral spinal cord to plantaris via tibial nerve. This motor connection projects from the S2 segment of sacral spinal cord and S1 segment of sacral spinal cord.
S1 segment of sacral spinal cord S2 segment of sacral spinal cord (with-axon-in tibial nerve) (with-axon-presynaptic-element-in plantaris) (implies Homo sapiens motor neuron)
from S1 segment of sacral spinal cord or S2 segment of sacral spinal cord to plantaris via tibial nerve
S1-S2 spinal cord to soleus muscle via tibial nerve
In human, the connection goes from S1 segment of sacral spinal cord or S2 segment of sacral spinal cord to soleus muscle via tibial nerve. This motor connection projects from the S2 segment of sacral spinal cord and S1 segment of sacral spinal cord.
S1 segment of sacral spinal cord S2 segment of sacral spinal cord (with-axon-in tibial nerve) (with-axon-presynaptic-element-in soleus muscle) (implies Homo sapiens motor neuron)
from S1 segment of sacral spinal cord or S2 segment of sacral spinal cord to soleus muscle via tibial nerve
L4-S1 spinal cord to popliteus muscle via tibial nerve
In human, the connection goes from L4 segment of lumbar spinal cord or L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to popliteus muscle via tibial nerve. This motor connection projects from the S1 segment of sacral spinal cord, L5 segment of lumbar spinal cord and L4 segment of lumbar spinal cord.
L4 segment of lumbar spinal cord L5 segment of lumbar spinal cord S1 segment of sacral spinal cord (with-axon-in tibial nerve) (with-axon-presynaptic-element-in popliteus muscle) (implies Homo sapiens motor neuron)
from L4 segment of lumbar spinal cord or L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to popliteus muscle via tibial nerve
S2 spinal cord to flexor hallucis longus muscle via tibial nerve
In human, the connection goes from S2 segment of sacral spinal cord to flexor hallucis longus via tibial nerve. This motor connection projects from the S2 segment of sacral spinal cord.
S2 segment of sacral spinal cord (with-axon-in tibial nerve) (with-axon-presynaptic-element-in flexor hallucis longus) (implies Homo sapiens motor neuron)
from S2 segment of sacral spinal cord to flexor hallucis longus via tibial nerve
S2 spinal cord to flexor digitorum longus muscle via tibial nerve
In human, the connection goes from S2 segment of sacral spinal cord to flexor digitorum longus via tibial nerve. This motor connection projects from the S2 segment of sacral spinal cord.
S2 segment of sacral spinal cord (with-axon-in tibial nerve) (with-axon-presynaptic-element-in flexor digitorum longus) (implies Homo sapiens motor neuron)
from S2 segment of sacral spinal cord to flexor digitorum longus via tibial nerve
L4-L5 spinal cord to tibialis posterium muscle via tibial nerve
In human, the connection goes from L4 segment of lumbar spinal cord or L5 segment of lumbar spinal cord to tibialis posterior via tibial nerve. This motor connection projects from the L5 segment of lumbar spinal cord and L4 segment of lumbar spinal cord.
L4 segment of lumbar spinal cord L5 segment of lumbar spinal cord (with-axon-in tibial nerve) (with-axon-presynaptic-element-in tibialis posterior) (implies Homo sapiens motor neuron)
from L4 segment of lumbar spinal cord or L5 segment of lumbar spinal cord to tibialis posterior via tibial nerve
L5-S1 spinal cord to fibularis longus muscle via superficial fibular nerve
In human, the connection goes from L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to fibularis longus via superficial fibular nerve. This motor connection projects from the S1 segment of sacral spinal cord and L5 segment of lumbar spinal cord.
L5 segment of lumbar spinal cord S1 segment of sacral spinal cord (with-axon-in superficial fibular nerve) (with-axon-presynaptic-element-in fibularis longus) (implies Homo sapiens motor neuron)
from L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to fibularis longus via superficial fibular nerve
L5-S1 spinal cord to fibularis brevis muscle via superficial fibular nerve
In human, the connection goes from L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to fibularis brevis via superficial fibular nerve. This motor connection projects from the S1 segment of sacral spinal cord and L5 segment of lumbar spinal cord.
L5 segment of lumbar spinal cord S1 segment of sacral spinal cord (with-axon-in superficial fibular nerve) (with-axon-presynaptic-element-in fibularis brevis) (implies Homo sapiens motor neuron)
from L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to fibularis brevis via superficial fibular nerve
L4 spinal cord to tibialis anterior muscle via deep fibular nerve
In human, the connection goes from L4 segment of lumbar spinal cord to tibialis anterior via deep fibular nerve. This motor connection projects from the L4 segment of lumbar spinal cord.
L4 segment of lumbar spinal cord (with-axon-in deep fibular nerve) (with-axon-presynaptic-element-in tibialis anterior) (implies Homo sapiens motor neuron)
from L4 segment of lumbar spinal cord to tibialis anterior via deep fibular nerve
L5-S1 spinal cord to extensor hallucis longus muscle via deep fibular nerve
In human, the connection goes from L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to extensor hallucis longus muscle via deep fibular nerve. This motor connection projects from the S1 segment of sacral spinal cord and L5 segment of lumbar spinal cord.
L5 segment of lumbar spinal cord S1 segment of sacral spinal cord (with-axon-in deep fibular nerve) (with-axon-presynaptic-element-in extensor hallucis longus muscle) (implies Homo sapiens motor neuron)
from L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to extensor hallucis longus muscle via deep fibular nerve
L5-S1 spinal cord to extensor digitorum longus muscle via deep fibular nerve
In human, the connection goes from L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to extensor digitorum longus via deep fibular nerve. This motor connection projects from the S1 segment of sacral spinal cord and L5 segment of lumbar spinal cord.
L5 segment of lumbar spinal cord S1 segment of sacral spinal cord (with-axon-in deep fibular nerve) (with-axon-presynaptic-element-in extensor digitorum longus) (implies Homo sapiens motor neuron)
from L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to extensor digitorum longus via deep fibular nerve
L5-S1 spinal cord to fabularis tertius muscle via deep fibular nerve
In human, the connection goes from L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to fibularis tertius via deep fibular nerve. This motor connection projects from the S1 segment of sacral spinal cord and L5 segment of lumbar spinal cord.
L5 segment of lumbar spinal cord S1 segment of sacral spinal cord (with-axon-in deep fibular nerve) (with-axon-presynaptic-element-in fibularis tertius) (implies Homo sapiens motor neuron)
from L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord to fibularis tertius via deep fibular nerve
S1-S2 spinal cord to extensor hallucis brevis and extensor digitorum brevis muscle via deep fibular nerve
In human, the connection goes from S1 segment of sacral spinal cord or S2 segment of sacral spinal cord to extensor digitorum brevis pes or extensor hallucis brevis via deep fibular nerve. This motor connection projects from the S2 segment of sacral spinal cord and S1 segment of sacral spinal cord.
S1 segment of sacral spinal cord S2 segment of sacral spinal cord (with-axon-in deep fibular nerve) (with-axon-presynaptic-element-in extensor digitorum brevis pes extensor hallucis brevis (TA98)) (implies Homo sapiens motor neuron)
from S1 segment of sacral spinal cord or S2 segment of sacral spinal cord to extensor digitorum brevis pes or extensor hallucis brevis via deep fibular nerve
Deep peroneal nerve is a synonym for deep fibular nerve. As to the origin source Grey's says S1-S2 and makes no mention of L5)\nIlias, http://uri.interlex.org/base/ilx_0794992 is extensor hallicus longus, not brevis. We need a term for the brevis muscle. Also, may not be necessary, but saw this physical therapy oriented page that mentions L5 as part of the range for deep peroneal nerve. (rather than the deep fibular nerve?) Moore KL, Dalley AF, Agur AMR. Clinial oriented anatomy. Philadelphia: Wolters Kluwer, 2010. https://www.physio-pedia.com/Extensor_Hallucis_Brevis#cite_note-:0-1\nreview destinations, there must be a synonym that isn't annotated?
S1-S3 spinal cord to abductor hallucis muscle via medial plantar nerve
In human, the connection goes from S1 segment of sacral spinal cord or S2 segment of sacral spinal cord or S3 segment of sacral spinal cord to abductor hallucis muscle via medial plantar nerve. This motor connection projects from the S2 segment of sacral spinal cord, S3 segment of sacral spinal cord and S1 segment of sacral spinal cord.
S1 segment of sacral spinal cord S2 segment of sacral spinal cord S3 segment of sacral spinal cord (with-axon-in medial plantar nerve) (with-axon-presynaptic-element-in abductor hallucis muscle) (implies Homo sapiens motor neuron)
from S1 segment of sacral spinal cord or S2 segment of sacral spinal cord or S3 segment of sacral spinal cord to abductor hallucis muscle via medial plantar nerve
S1-S3 spinal cord to flexor digitorum longus muscle via medial plantar nerve
In human, the connection goes from S1 segment of sacral spinal cord or S2 segment of sacral spinal cord or S3 segment of sacral spinal cord to flexor digitorum longus via medial plantar nerve. This motor connection projects from the S2 segment of sacral spinal cord, S3 segment of sacral spinal cord and S1 segment of sacral spinal cord.
S1 segment of sacral spinal cord S2 segment of sacral spinal cord S3 segment of sacral spinal cord (with-axon-in medial plantar nerve) (with-axon-presynaptic-element-in flexor digitorum longus) (implies Homo sapiens motor neuron)
from S1 segment of sacral spinal cord or S2 segment of sacral spinal cord or S3 segment of sacral spinal cord to flexor digitorum longus via medial plantar nerve
S1-S3 spinal cord to abductor digiti minimi muscle of foot via lateral plantar nerve
In human, the connection goes from S1 segment of sacral spinal cord or S2 segment of sacral spinal cord or S3 segment of sacral spinal cord to Abductor digiti minimi muscle of foot via lateral plantar nerve. This motor connection projects from the S2 segment of sacral spinal cord, S3 segment of sacral spinal cord and S1 segment of sacral spinal cord.
S1 segment of sacral spinal cord S2 segment of sacral spinal cord S3 segment of sacral spinal cord (with-axon-in lateral plantar nerve) (with-axon-presynaptic-element-in Abductor digiti minimi muscle of foot) (implies Homo sapiens motor neuron)
from S1 segment of sacral spinal cord or S2 segment of sacral spinal cord or S3 segment of sacral spinal cord to Abductor digiti minimi muscle of foot via lateral plantar nerve
S1-S3 spinal cord to quadratus plantae muscle via lateral plantar nerve
In human, the connection goes from S1 segment of sacral spinal cord or S2 segment of sacral spinal cord or S3 segment of sacral spinal cord to quadratus plantae muscle via lateral plantar nerve. This motor connection projects from the S2 segment of sacral spinal cord, S3 segment of sacral spinal cord and S1 segment of sacral spinal cord.
S1 segment of sacral spinal cord S2 segment of sacral spinal cord S3 segment of sacral spinal cord (with-axon-in lateral plantar nerve) (with-axon-presynaptic-element-in quadratus plantae muscle) (implies Homo sapiens motor neuron)
from S1 segment of sacral spinal cord or S2 segment of sacral spinal cord or S3 segment of sacral spinal cord to quadratus plantae muscle via lateral plantar nerve
S2-S3 spinal cord to first lumbrical muscle via medial plantar nerve
In human, the connection goes from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord to lumbrical muscle of pes via medial plantar nerve. This motor connection projects from the S2 segment of sacral spinal cord and S3 segment of sacral spinal cord.
S2 segment of sacral spinal cord S3 segment of sacral spinal cord (with-axon-in medial plantar nerve) (with-axon-presynaptic-element-in lumbrical muscle of pes) (implies Homo sapiens motor neuron)
from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord to lumbrical muscle of pes via medial plantar nerve
S2-S3 spinal cord to 2nd-4th lumbrical muscle via lateral plantar nerve
In human, the connection goes from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord to lumbrical muscle of pes via lateral plantar nerve. This motor connection projects from the S2 segment of sacral spinal cord and S3 segment of sacral spinal cord.
S2 segment of sacral spinal cord S3 segment of sacral spinal cord (with-axon-in lateral plantar nerve) (with-axon-presynaptic-element-in lumbrical muscle of pes) (implies Homo sapiens motor neuron)
from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord to lumbrical muscle of pes via lateral plantar nerve
S1 spinal cord to flexor hallucis brevis muscle via medial plantar nerve
In human, the connection goes from S1 segment of sacral spinal cord to flexor hallucis brevis muscle via medial plantar nerve. This motor connection projects from the S1 segment of sacral spinal cord.
S1 segment of sacral spinal cord (with-axon-in medial plantar nerve) (with-axon-presynaptic-element-in flexor hallucis brevis muscle) (implies Homo sapiens motor neuron)
from S1 segment of sacral spinal cord to flexor hallucis brevis muscle via medial plantar nerve
S2-S3 spinal cord to adductor hallucis muscle via lateral plantar nerve
In human, the connection goes from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord to adductor hallucis muscle via lateral plantar nerve. This motor connection projects from the S2 segment of sacral spinal cord and S3 segment of sacral spinal cord.
S2 segment of sacral spinal cord S3 segment of sacral spinal cord (with-axon-in lateral plantar nerve) (with-axon-presynaptic-element-in adductor hallucis muscle) (implies Homo sapiens motor neuron)
from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord to adductor hallucis muscle via lateral plantar nerve
S2-S3 spinal cord to flexor digiti minimi brevis muscle via lateral plantar nerve
In human, the connection goes from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord to Flexor digiti minimi brevis of the foot via lateral plantar nerve. This motor connection projects from the S2 segment of sacral spinal cord and S3 segment of sacral spinal cord.
S2 segment of sacral spinal cord S3 segment of sacral spinal cord (with-axon-in lateral plantar nerve) (with-axon-presynaptic-element-in Flexor digiti minimi brevis of the foot) (implies Homo sapiens motor neuron)
from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord to Flexor digiti minimi brevis of the foot via lateral plantar nerve
S2-S3 spinal cord to dorsal interossei muscle via lateral plantar nerve OR deep fibular nerve
In human, the connection goes from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord to dorsal pes interosseous muscle via deep fibular nerve, lateral plantar nerve. This motor connection projects from the S2 segment of sacral spinal cord and S3 segment of sacral spinal cord.
S2 segment of sacral spinal cord S3 segment of sacral spinal cord (with-axons-in deep fibular nerve lateral plantar nerve) (with-axon-presynaptic-element-in dorsal pes interosseous muscle) (implies Homo sapiens motor neuron)
from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord to dorsal pes interosseous muscle via deep fibular nerve, lateral plantar nerve
S2-S3 spinal cord to plantar interosseous muscle of pes via lateral plantar nerve
In human, the connection goes from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord to plantar interosseous muscle of pes via lateral plantar nerve. This motor connection projects from the S2 segment of sacral spinal cord and S3 segment of sacral spinal cord.
S2 segment of sacral spinal cord S3 segment of sacral spinal cord (with-axon-in lateral plantar nerve) (with-axon-presynaptic-element-in plantar interosseous muscle of pes) (implies Homo sapiens motor neuron)
from S2 segment of sacral spinal cord or S3 segment of sacral spinal cord to plantar interosseous muscle of pes via lateral plantar nerve
L1 dorsal root ganglia with axon sensory terminal in skin over anteromedial part of upper thigh and adjacent skin of perineum via ilioinguinal nerve with axon terminal in L1 spinal cord via L1 dorsal root of spinal cord
In human, the connection goes from first lumbar dorsal root ganglion to L1 segment of lumbar spinal cord via Posterior root of first lumbar nerve; from first lumbar dorsal root ganglion to skin of the perineum or upper leg skin via Ilioinguinal nerve. This sensory connection projects from the first lumbar dorsal root ganglion.
first lumbar dorsal root ganglion (with-axon-in Posterior root of first lumbar nerve) (with-axon-presynaptic-element-in L1 segment of lumbar spinal cord) (implies Homo sapiens sensory neuron)
from first lumbar dorsal root ganglion to L1 segment of lumbar spinal cord via Posterior root of first lumbar nerve from first lumbar dorsal root ganglion to skin of the perineum or upper leg skin via Ilioinguinal nerve
updated to include ilioinguinal nerve as axon leading to sensory terminal.
L1-L2 dorsal root ganglia with axon sensory terminal in skin on anterior central part of upper thigh via femoral branch of genitofemoral nerve with axon terminal in L1-L2 spinal cord via L1-L2 dorsal roots of spinal cord
In human, the connection goes from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion to L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord via Posterior root of first lumbar nerve, Posterior root of second lumbar nerve; from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion to upper leg skin via femoral branch of genitofemoral nerve. This sensory connection projects from the first lumbar dorsal root ganglion and second lumbar dorsal root ganglion.
first lumbar dorsal root ganglion second lumbar dorsal root ganglion (with-axons-in Posterior root of first lumbar nerve Posterior root of second lumbar nerve) (with-axon-presynaptic-element-in L1 segment of lumbar spinal cord L2 segment of lumbar spinal cord) (implies Homo sapiens sensory neuron)
from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion to L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord via Posterior root of first lumbar nerve, Posterior root of second lumbar nerve from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion to upper leg skin via femoral branch of genitofemoral nerve
updated path to include femoral branch of genitofemoral nerve as axon leading to sensory terminal.
L1-L2 dorsal root ganglia with axon sensory terminal in anterior part of perineum (mons pubis) via genital branch of genitofemoral nerve with axon terminal in L1-L2 spinal cord via L1-L2 dorsal roots of spinal cord
In male human, the connection goes from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion to L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord via Posterior root of first lumbar nerve, Posterior root of second lumbar nerve; from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion to perineum via Genital branch of genitofemoral nerve. This sensory connection projects from the first lumbar dorsal root ganglion and second lumbar dorsal root ganglion.
male first lumbar dorsal root ganglion second lumbar dorsal root ganglion (with-axons-in Posterior root of first lumbar nerve Posterior root of second lumbar nerve) (with-axon-presynaptic-element-in L1 segment of lumbar spinal cord L2 segment of lumbar spinal cord) (implies Homo sapiens sensory neuron)
from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion to L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord via Posterior root of first lumbar nerve, Posterior root of second lumbar nerve from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion to perineum via Genital branch of genitofemoral nerve
Added alert "Found only in men."\nupdated to include genital branch of genitofemoral nerve as axon leading to sensory terminal.\nThe population was split into two because of sex-specific information\nUpdated to remove generic "dorsal root of spinal cord" in favor of segment specific posterior roots, per Ilias.\n@ilias - This could be broken into 2 populations: male and female, correct? since there's different anatomies?
L1-L2 dorsal root ganglia with axon sensory terminal in anterior part of perineum (mons pubis and anterior labia majora in women) via genital branch of genitofemoral nerve with axon terminal in L1-L2 spinal cord via L1-L2 dorsal roots of spinal cord
In female human, the connection goes from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion to labium majora or mons pubis or perineum via Genital branch of genitofemoral nerve; from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion to L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord via Posterior root of first lumbar nerve, Posterior root of second lumbar nerve. This sensory connection projects from the first lumbar dorsal root ganglion and second lumbar dorsal root ganglion.
female first lumbar dorsal root ganglion second lumbar dorsal root ganglion (with-axons-in Posterior root of first lumbar nerve Posterior root of second lumbar nerve) (with-axon-presynaptic-element-in L1 segment of lumbar spinal cord L2 segment of lumbar spinal cord) (implies Homo sapiens sensory neuron)
from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion to labium majora or mons pubis or perineum via Genital branch of genitofemoral nerve from first lumbar dorsal root ganglion or second lumbar dorsal root ganglion to L1 segment of lumbar spinal cord or L2 segment of lumbar spinal cord via Posterior root of first lumbar nerve, Posterior root of second lumbar nerve
Added alert "Found only in women."\nupdated to include genital branch of genitofemoral nerve as axon leading to sensory terminal
L2-L4 dorsal root ganglia with axon sensory terminal in skin over the anterior thigh or anteromedial knee or medial side of the leg or the medial side of the foot via femoral nerve with axon terminal in L2-L4 spinal cord via dorsal root of spinal cord
In human, the connection goes from fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion to L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord via Posterior root of fourth lumbar nerve, Posterior root of second lumbar nerve, Posterior root of third lumbar nerve; from fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion to skin of knee or skin of leg or skin of pes or upper leg skin via femoral nerve. This sensory connection projects from the fourth lumbar dorsal root ganglion, second lumbar dorsal root ganglion and third lumbar dorsal root ganglion.
fourth lumbar dorsal root ganglion second lumbar dorsal root ganglion third lumbar dorsal root ganglion (with-axons-in Posterior root of fourth lumbar nerve Posterior root of second lumbar nerve Posterior root of third lumbar nerve) (with-axon-presynaptic-element-in L2 segment of lumbar spinal cord L3 segment of lumbar spinal cord L4 segment of lumbar spinal cord) (implies Homo sapiens sensory neuron)
from fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion to L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord via Posterior root of fourth lumbar nerve, Posterior root of second lumbar nerve, Posterior root of third lumbar nerve from fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion to skin of knee or skin of leg or skin of pes or upper leg skin via femoral nerve
updated to include femoral nerve as axon leading to sensory terminal
L2-L4 dorsal root ganglia with axon sensory terminal in skin over upper medial aspect of thigh via obturator nerve with axon terminal in L2-L4 spinal cord via L2-L4 dorsal roots of spinal cord
In human, the connection goes from fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion to L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord via Posterior root of fourth lumbar nerve, Posterior root of second lumbar nerve, Posterior root of third lumbar nerve; from fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion to upper leg skin via obturator nerve. This sensory connection projects from the fourth lumbar dorsal root ganglion, second lumbar dorsal root ganglion and third lumbar dorsal root ganglion.
from fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion to L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord or L4 segment of lumbar spinal cord via Posterior root of fourth lumbar nerve, Posterior root of second lumbar nerve, Posterior root of third lumbar nerve from fourth lumbar dorsal root ganglion or second lumbar dorsal root ganglion or third lumbar dorsal root ganglion to upper leg skin via obturator nerve
updated to include obturator nerve as axon leading to sensory terminal\nupdated the path so that generic "dorsal root of spinal cord" is removed in favor of segment specific posterior roots, per Ilias
L4-S3 dorsal root ganglia with axon sensory terminal in skin over lateral side of leg or foot or over the sole or dorsal surface of foot via sciatic nerve with axon terminal in L4-S3 spinal cord via L4-S3 dorsal roots of spinal cord
In human, the connection goes from fifth lumbar dorsal root ganglion or first sacral dorsal root ganglion or fourth lumbar dorsal root ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to skin of leg or skin of pes via Posterior root of fifth lumbar nerve, Posterior root of first sacral nerve, Posterior root of fourth lumbar nerve, Posterior root of second sacral nerve, Posterior root of third sacral nerve via sciatic nerve; from fifth lumbar dorsal root ganglion or first sacral dorsal root ganglion or fourth lumbar dorsal root ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to L4 segment of lumbar spinal cord or L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord or S2 segment of sacral spinal cord or S3 segment of sacral spinal cord via Posterior root of fifth lumbar nerve, Posterior root of first sacral nerve, Posterior root of fourth lumbar nerve, Posterior root of second sacral nerve, Posterior root of third sacral nerve. This sensory connection projects from the fifth lumbar dorsal root ganglion, first sacral dorsal root ganglion, fourth lumbar dorsal root ganglion, second sacral dorsal root ganglion and third sacral dorsal root ganglion.
fifth lumbar dorsal root ganglion first sacral dorsal root ganglion fourth lumbar dorsal root ganglion second sacral dorsal root ganglion third sacral dorsal root ganglion (with-axons-in Posterior root of fifth lumbar nerve Posterior root of first sacral nerve Posterior root of fourth lumbar nerve Posterior root of second sacral nerve Posterior root of third sacral nerve) (with-axon-presynaptic-element-in L4 segment of lumbar spinal cord L5 segment of lumbar spinal cord S1 segment of sacral spinal cord S2 segment of sacral spinal cord S3 segment of sacral spinal cord) (implies Homo sapiens sensory neuron)
from fifth lumbar dorsal root ganglion or first sacral dorsal root ganglion or fourth lumbar dorsal root ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to skin of leg or skin of pes via Posterior root of fifth lumbar nerve, Posterior root of first sacral nerve, Posterior root of fourth lumbar nerve, Posterior root of second sacral nerve, Posterior root of third sacral nerve via sciatic nerve from fifth lumbar dorsal root ganglion or first sacral dorsal root ganglion or fourth lumbar dorsal root ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to L4 segment of lumbar spinal cord or L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord or S2 segment of sacral spinal cord or S3 segment of sacral spinal cord via Posterior root of fifth lumbar nerve, Posterior root of first sacral nerve, Posterior root of fourth lumbar nerve, Posterior root of second sacral nerve, Posterior root of third sacral nerve
Changed a2bviac to change "and" with "or" for the destinations.\nupdated to include sciatic nerve as Axon leading to sensory terminal in partial order.\nUpdated path to remove generic dorsal root of spinal cord to replace with individual segments posterior roots, per ilias.
L2-L3 dorsal root ganglia with axon sensory terminal in parietal peritoneum in iliac fossa OR skin over anterolateral thigh via lateral cutaneous nerve of thigh with axon terminal in L2-L3 spinal cord via L2-L3 dorsal roots of spinal cord
In human, the connection goes from second lumbar dorsal root ganglion or third lumbar dorsal root ganglion to L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord via Posterior root of second lumbar nerve, Posterior root of third lumbar nerve; from second lumbar dorsal root ganglion or third lumbar dorsal root ganglion to iliac fossa or parietal peritoneum or upper leg skin via Lateral cutaneous nerve of thigh. This sensory connection projects from the second lumbar dorsal root ganglion and third lumbar dorsal root ganglion.
second lumbar dorsal root ganglion third lumbar dorsal root ganglion (with-axons-in Posterior root of second lumbar nerve Posterior root of third lumbar nerve) (with-axon-presynaptic-element-in L2 segment of lumbar spinal cord L3 segment of lumbar spinal cord) (implies Homo sapiens sensory neuron)
from second lumbar dorsal root ganglion or third lumbar dorsal root ganglion to L2 segment of lumbar spinal cord or L3 segment of lumbar spinal cord via Posterior root of second lumbar nerve, Posterior root of third lumbar nerve from second lumbar dorsal root ganglion or third lumbar dorsal root ganglion to iliac fossa or parietal peritoneum or upper leg skin via Lateral cutaneous nerve of thigh
updated to include lateral cutanteous nerve of the thigh as axon leading to sensory terminal.\nUpdated path building to remove generic dorsal root of spinal cord and replace it with segement specific posterior roots, per ilias.
S1-S3 dorsal root ganglia with axon sensory terminal in skin over gluteal fold or upper medial aspect of thigh or adjacent perineum or posterior aspect of thigh or upper posterior leg via posterior cutaneous nerve of thigh with axon terminal in S1-S3 spinal cord via S1-S3 dorsal roots of spinal cord
In human, the connection goes from first sacral dorsal root ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to S1 segment of sacral spinal cord or S2 segment of sacral spinal cord or S3 segment of sacral spinal cord via Posterior root of first sacral nerve, Posterior root of second sacral nerve, Posterior root of third sacral nerve; from first sacral dorsal root ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to gluteal sulcus or skin of the perineum or upper leg skin via posterior cutaneous nerve of thigh. This sensory connection projects from the first sacral dorsal root ganglion, second sacral dorsal root ganglion and third sacral dorsal root ganglion.
first sacral dorsal root ganglion second sacral dorsal root ganglion third sacral dorsal root ganglion (with-axons-in Posterior root of first sacral nerve Posterior root of second sacral nerve Posterior root of third sacral nerve) (with-axon-presynaptic-element-in S1 segment of sacral spinal cord S2 segment of sacral spinal cord S3 segment of sacral spinal cord) (implies Homo sapiens sensory neuron)
from first sacral dorsal root ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to S1 segment of sacral spinal cord or S2 segment of sacral spinal cord or S3 segment of sacral spinal cord via Posterior root of first sacral nerve, Posterior root of second sacral nerve, Posterior root of third sacral nerve from first sacral dorsal root ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to gluteal sulcus or skin of the perineum or upper leg skin via posterior cutaneous nerve of thigh
I added skin of the perineum http://uri.interlex.org/base/ilx_0794987 as a destination and corrected the "and" with "or" in the multiple destinations.\nupdated posterior cutaneous nerve as axon leading to sensory terminal. see question below.\nAdded posterior cutanteous nerve of thigh to partial order, there is no mention of the perinuem in the partial order, however. Should there be?
S2-S3 dorsal root ganglia with axon sensory terminal in skin over medial aspect of gluteal fold via perforating cutaneous nerve with axon terminal in S2-S3 spinal cord via S2-S3 dorsal roots of spinal cord
In human, the connection goes from second sacral dorsal root ganglion or third sacral dorsal root ganglion to S2 segment of sacral spinal cord or S3 segment of sacral spinal cord via Posterior root of second sacral nerve, Posterior root of third sacral nerve; from second sacral dorsal root ganglion or third sacral dorsal root ganglion to gluteal sulcus via perforating cutaneous nerve. This sensory connection projects from the second sacral dorsal root ganglion and third sacral dorsal root ganglion.
second sacral dorsal root ganglion third sacral dorsal root ganglion (with-axons-in Posterior root of second sacral nerve Posterior root of third sacral nerve) (with-axon-presynaptic-element-in S2 segment of sacral spinal cord S3 segment of sacral spinal cord) (implies Homo sapiens sensory neuron)
from second sacral dorsal root ganglion or third sacral dorsal root ganglion to S2 segment of sacral spinal cord or S3 segment of sacral spinal cord via Posterior root of second sacral nerve, Posterior root of third sacral nerve from second sacral dorsal root ganglion or third sacral dorsal root ganglion to gluteal sulcus via perforating cutaneous nerve
updated to axon leading to sensory terminal\nPerforating cutaneous nerve added to partial order.\nWe can add the term Skin of buttock http://uri.interlex.org/base/ilx_0795003 for now. It covers the cutaneous region mentioned in the population but this one is more generic. We need to create the specific term.\nupdated the path to remove generic "dorsal root of spinal cord" in favor of segment specific posterior roots, per Ilias.\nis gluteal fold = skin over gluteal fold?
L4-S3 dorsal root ganglia with axon sensory terminal in plantar surface of foot via radial nerve via medial plantar nerve with axon terminal in L4-S3 spinal cord via L4-S3 dorsal roots of spinal cord
In human, the connection goes from fifth lumbar dorsal root ganglion or first sacral dorsal root ganglion or fourth lumbar dorsal root ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to L4 segment of lumbar spinal cord or L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord or S2 segment of sacral spinal cord or S3 segment of sacral spinal cord via Posterior root of fifth lumbar nerve, Posterior root of first sacral nerve, Posterior root of fourth lumbar nerve, Posterior root of second sacral nerve, Posterior root of third sacral nerve; from fifth lumbar dorsal root ganglion or first sacral dorsal root ganglion or fourth lumbar dorsal root ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to plantar part of pes via radial nerve via medial plantar nerve. This sensory connection projects from the fifth lumbar dorsal root ganglion, first sacral dorsal root ganglion, fourth lumbar dorsal root ganglion, second sacral dorsal root ganglion and third sacral dorsal root ganglion.
from fifth lumbar dorsal root ganglion or first sacral dorsal root ganglion or fourth lumbar dorsal root ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to L4 segment of lumbar spinal cord or L5 segment of lumbar spinal cord or S1 segment of sacral spinal cord or S2 segment of sacral spinal cord or S3 segment of sacral spinal cord via Posterior root of fifth lumbar nerve, Posterior root of first sacral nerve, Posterior root of fourth lumbar nerve, Posterior root of second sacral nerve, Posterior root of third sacral nerve from fifth lumbar dorsal root ganglion or first sacral dorsal root ganglion or fourth lumbar dorsal root ganglion or second sacral dorsal root ganglion or third sacral dorsal root ganglion to plantar part of pes via radial nerve via medial plantar nerve
updated to axon leading to sensory terminal for medial plantar and radial nerves.\nupdated partial order to include plantar nerve and radial nerve.\nupdated to remove the "dorsal root of spinal cord" in favor of segment specific posterior roots, per Ilias.
L1 dorsal root ganglia with axon sensory terminal in posterolateral gluteal skin and skin in pubic region via iliohypogastric nerve with axon terminal in L1 spinal cord via L1 dorsal root of spinal cord
In human, the connection goes from first lumbar dorsal root ganglion to Skin of buttock or Skin of lower abdomen via iliohypogastric nerve; from first lumbar dorsal root ganglion to L1 segment of lumbar spinal cord via Posterior root of first lumbar nerve. This sensory connection projects from the first lumbar dorsal root ganglion.
from first lumbar dorsal root ganglion to Skin of buttock or Skin of lower abdomen via iliohypogastric nerve from first lumbar dorsal root ganglion to L1 segment of lumbar spinal cord via Posterior root of first lumbar nerve
updated to include iliohypogastric nerve as axon leading to sensory terminal.\nupdated to remove the generic "dorsal root of spinal cord" with segment specific posterior root, per ilias.
L2 spinal cord to iliacus muscle via femoral nerve
In human, the connection goes from L2 segment of lumbar spinal cord to iliacus muscle via femoral nerve. This motor connection projects from the L2 segment of lumbar spinal cord.
L2 segment of lumbar spinal cord (with-axon-in femoral nerve) (with-axon-presynaptic-element-in iliacus muscle) (implies Homo sapiens motor neuron)
from L2 segment of lumbar spinal cord to iliacus muscle via femoral nerve
Intermediolateral cell column of T2-T8 to sympathetic trunk ganglia of T2-T8 via white communicating rami
In human, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of fifth thoracic segment or Intermediolateral nucleus of fourth thoracic segment or Intermediolateral nucleus of second thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of sixth thoracic segment or Intermediolateral nucleus of third thoracic segment to Eighth thoracic ganglion or Fifth thoracic ganglion or Fourth thoracic ganglion or Second thoracic ganglion or Seventh thoracic ganglion or Sixth thoracic ganglion or Third thoracic ganglion via white communicating ramus of eighth thoracic spinal nerve, white communicating ramus of fifth thoracic spinal nerve, white communicating ramus of fourth thoracic spinal nerve, white communicating ramus of second thoracic spinal nerve, white communicating ramus of seventh thoracic spinal nerve, white communicating ramus of sixth thoracic spinal nerve, white communicating ramus of third thoracic spinal nerve. This connection projects from the Intermediolateral nucleus of eighth thoracic segment, Intermediolateral nucleus of fifth thoracic segment, Intermediolateral nucleus of fourth thoracic segment, Intermediolateral nucleus of second thoracic segment, Intermediolateral nucleus of seventh thoracic segment, Intermediolateral nucleus of sixth thoracic segment and Intermediolateral nucleus of third thoracic segment.
Dr. Bernard de Bono requested to add the generic via "nerves" for each postganglionic population since the references do not mention the nerves each population travels with.
Intermediolateral nucleus of eighth thoracic segment Intermediolateral nucleus of fifth thoracic segment Intermediolateral nucleus of fourth thoracic segment Intermediolateral nucleus of second thoracic segment Intermediolateral nucleus of seventh thoracic segment Intermediolateral nucleus of sixth thoracic segment Intermediolateral nucleus of third thoracic segment (with-axons-in white communicating ramus of eighth thoracic spinal nerve white communicating ramus of fifth thoracic spinal nerve white communicating ramus of fourth thoracic spinal nerve white communicating ramus of second thoracic spinal nerve white communicating ramus of seventh thoracic spinal nerve white communicating ramus of sixth thoracic spinal nerve white communicating ramus of third thoracic spinal nerve) (with-axon-presynaptic-element-in T2 sympathetic chain ganglion T3 sympathetic chain ganglion T4 sympathetic chain ganglion T5 sympathetic chain ganglion T6 sympathetic chain ganglion T7 sympathetic chain ganglion T8 sympathetic chain ganglion) (projecting-onto neuron type swglnd 157) neuron (implies Homo sapiens Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of fifth thoracic segment or Intermediolateral nucleus of fourth thoracic segment or Intermediolateral nucleus of second thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of sixth thoracic segment or Intermediolateral nucleus of third thoracic segment to Eighth thoracic ganglion or Fifth thoracic ganglion or Fourth thoracic ganglion or Second thoracic ganglion or Seventh thoracic ganglion or Sixth thoracic ganglion or Third thoracic ganglion via white communicating ramus of eighth thoracic spinal nerve, white communicating ramus of fifth thoracic spinal nerve, white communicating ramus of fourth thoracic spinal nerve, white communicating ramus of second thoracic spinal nerve, white communicating ramus of seventh thoracic spinal nerve, white communicating ramus of sixth thoracic spinal nerve, white communicating ramus of third thoracic spinal nerve
sympathetic trunk ganglia of T2-T8 to eccrine sweat glands of the skin of the upper limb via nerves
In human, the sympathetic post-ganglionic connection goes from Eighth thoracic ganglion or Fifth thoracic ganglion or Fourth thoracic ganglion or Second thoracic ganglion or Seventh thoracic ganglion or Sixth thoracic ganglion or Third thoracic ganglion to eccrine sweat gland of the upper limb via nerve. This connection projects from the Eighth thoracic ganglion, Fifth thoracic ganglion, Fourth thoracic ganglion, Second thoracic ganglion, Seventh thoracic ganglion, Sixth thoracic ganglion and Third thoracic ganglion.
T2 sympathetic chain ganglion T3 sympathetic chain ganglion T4 sympathetic chain ganglion T5 sympathetic chain ganglion T6 sympathetic chain ganglion T7 sympathetic chain ganglion T8 sympathetic chain ganglion (with-axon-in nerve) (with-axon-presynaptic-element-in eccrine sweat gland of the upper limb) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from Eighth thoracic ganglion or Fifth thoracic ganglion or Fourth thoracic ganglion or Second thoracic ganglion or Seventh thoracic ganglion or Sixth thoracic ganglion or Third thoracic ganglion to eccrine sweat gland of the upper limb via nerve
Intermediolateral cell column of T1-T4 to sympathetic trunk ganglia of T1-T4 via white communicating rami
In human, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of first thoracic segment or Intermediolateral nucleus of fourth thoracic segment or Intermediolateral nucleus of second thoracic segment or Intermediolateral nucleus of third thoracic segment to Fourth thoracic ganglion or Second thoracic ganglion or T1 sympathetic ganglion or Third thoracic ganglion via white communicating ramus of first thoracic spinal nerve, white communicating ramus of fourth thoracic spinal nerve, white communicating ramus of second thoracic spinal nerve, white communicating ramus of third thoracic spinal nerve. This connection projects from the Intermediolateral nucleus of fourth thoracic segment, Intermediolateral nucleus of second thoracic segment, Intermediolateral nucleus of third thoracic segment and Intermediolateral nucleus of first thoracic segment.
Intermediolateral nucleus of first thoracic segment Intermediolateral nucleus of fourth thoracic segment Intermediolateral nucleus of second thoracic segment Intermediolateral nucleus of third thoracic segment (with-axons-in white communicating ramus of first thoracic spinal nerve white communicating ramus of fourth thoracic spinal nerve white communicating ramus of second thoracic spinal nerve white communicating ramus of third thoracic spinal nerve) (with-axon-presynaptic-element-in T1 sympathetic chain ganglion T2 sympathetic chain ganglion T3 sympathetic chain ganglion T4 sympathetic chain ganglion) (projecting-onto neuron type swglnd 159) neuron (implies Homo sapiens Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of first thoracic segment or Intermediolateral nucleus of fourth thoracic segment or Intermediolateral nucleus of second thoracic segment or Intermediolateral nucleus of third thoracic segment to Fourth thoracic ganglion or Second thoracic ganglion or T1 sympathetic ganglion or Third thoracic ganglion via white communicating ramus of first thoracic spinal nerve, white communicating ramus of fourth thoracic spinal nerve, white communicating ramus of second thoracic spinal nerve, white communicating ramus of third thoracic spinal nerve
No, IML is a part of spinal cord gray matter. This was added because the term didn't exist then and that's the closest correct term. I have created the term IML OF T1 and will bring it to SAWG.\nconfirm that "gray matter of T1 segment" = intermediolateral nucleus of first thoracic segment"
sympathetic trunk ganglia of T1-T4 to eccrine sweat glands of the skin of the face and eyelids via nerves
In human, the sympathetic post-ganglionic connection goes from Fourth thoracic ganglion or Second thoracic ganglion or T1 sympathetic ganglion or Third thoracic ganglion to eccrine sweat gland of the face via nerve. This connection projects from the Fourth thoracic ganglion, Second thoracic ganglion, T1 sympathetic ganglion and Third thoracic ganglion.
T1 sympathetic chain ganglion T2 sympathetic chain ganglion T3 sympathetic chain ganglion T4 sympathetic chain ganglion (with-axon-in nerve) (with-axon-presynaptic-element-in eccrine sweat gland of the face) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from Fourth thoracic ganglion or Second thoracic ganglion or T1 sympathetic ganglion or Third thoracic ganglion to eccrine sweat gland of the face via nerve
I think by saying "sweat glands of the face is enough", the label is descriptive and more specific and it is surfaced. We also did this with several sensory senmot populations where they are mentioning many different skin parts but we include the general fross region in the modeling and then the label of the neuron is a bit more specific. Regarding the via is because we don't know how they travel but because we guess they are nerves and not simply postganglionic fibers we included the generic term nerve with Bernard. Do you think we should add a note in the alerts?\nwhat nerve(s) is this? also, is there a separate sweat gland for the eyelid?
Intermediolateral cell column of T4-T12 to sympathetic trunk ganglia of T4-T12 via white communicating rami
In human, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of eleventh thoracic segment or Intermediolateral nucleus of fifth thoracic segment or Intermediolateral nucleus of fourth thoracic segment or Intermediolateral nucleus of ninth thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of sixth thoracic segment or Intermediolateral nucleus of tenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to Eighth thoracic ganglion or Eleventh thoracic ganglion or Fifth thoracic ganglion or Fourth thoracic ganglion or Ninth thoracic ganglion or Seventh thoracic ganglion or Sixth thoracic ganglion or Tenth thoracic ganglion or Twelfth thoracic ganglion via white communicating ramus of eighth thoracic spinal nerve, white communicating ramus of eleventh thoracic spinal nerve, white communicating ramus of fifth thoracic spinal nerve, white communicating ramus of fourth thoracic spinal nerve, white communicating ramus of ninth thoracic spinal nerve, white communicating ramus of seventh thoracic spinal nerve, white communicating ramus of sixth thoracic spinal nerve, white communicating ramus of tenth thoracic spinal nerve, white communicating ramus of twelfth thoracic spinal nerve. This connection projects from the Intermediolateral nucleus of eighth thoracic segment, Intermediolateral nucleus of eleventh thoracic segment, Intermediolateral nucleus of fifth thoracic segment, Intermediolateral nucleus of fourth thoracic segment, Intermediolateral nucleus of ninth thoracic segment, Intermediolateral nucleus of seventh thoracic segment, Intermediolateral nucleus of sixth thoracic segment, Intermediolateral nucleus of tenth thoracic segment and Intermediolateral nucleus of twelfth thoracic segment.
Intermediolateral nucleus of eighth thoracic segment Intermediolateral nucleus of eleventh thoracic segment Intermediolateral nucleus of fifth thoracic segment Intermediolateral nucleus of fourth thoracic segment Intermediolateral nucleus of ninth thoracic segment Intermediolateral nucleus of seventh thoracic segment Intermediolateral nucleus of sixth thoracic segment Intermediolateral nucleus of tenth thoracic segment Intermediolateral nucleus of twelfth thoracic segment (with-axons-in white communicating ramus of eighth thoracic spinal nerve white communicating ramus of eleventh thoracic spinal nerve white communicating ramus of fifth thoracic spinal nerve white communicating ramus of fourth thoracic spinal nerve white communicating ramus of ninth thoracic spinal nerve white communicating ramus of seventh thoracic spinal nerve white communicating ramus of sixth thoracic spinal nerve white communicating ramus of tenth thoracic spinal nerve white communicating ramus of twelfth thoracic spinal nerve) (with-axon-presynaptic-element-in T10 sympathetic chain ganglion T11 sympathetic chain ganglion T12 sympathetic chain ganglion T4 sympathetic chain ganglion T5 sympathetic chain ganglion T6 sympathetic chain ganglion T7 sympathetic chain ganglion T8 sympathetic chain ganglion T9 sympathetic chain ganglion) (projecting-onto neuron type swglnd 161) neuron (implies Homo sapiens Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of eighth thoracic segment or Intermediolateral nucleus of eleventh thoracic segment or Intermediolateral nucleus of fifth thoracic segment or Intermediolateral nucleus of fourth thoracic segment or Intermediolateral nucleus of ninth thoracic segment or Intermediolateral nucleus of seventh thoracic segment or Intermediolateral nucleus of sixth thoracic segment or Intermediolateral nucleus of tenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to Eighth thoracic ganglion or Eleventh thoracic ganglion or Fifth thoracic ganglion or Fourth thoracic ganglion or Ninth thoracic ganglion or Seventh thoracic ganglion or Sixth thoracic ganglion or Tenth thoracic ganglion or Twelfth thoracic ganglion via white communicating ramus of eighth thoracic spinal nerve, white communicating ramus of eleventh thoracic spinal nerve, white communicating ramus of fifth thoracic spinal nerve, white communicating ramus of fourth thoracic spinal nerve, white communicating ramus of ninth thoracic spinal nerve, white communicating ramus of seventh thoracic spinal nerve, white communicating ramus of sixth thoracic spinal nerve, white communicating ramus of tenth thoracic spinal nerve, white communicating ramus of twelfth thoracic spinal nerve
sympathetic trunk ganglia of T4-T12 to eccrine sweat glands of the skin of the trunk via nerves
In human, the sympathetic post-ganglionic connection goes from Eighth thoracic ganglion or Eleventh thoracic ganglion or Fifth thoracic ganglion or Fourth thoracic ganglion or Ninth thoracic ganglion or Seventh thoracic ganglion or Sixth thoracic ganglion or Tenth thoracic ganglion or Twelfth thoracic ganglion to eccrine sweat gland of the trunk via nerve. This connection projects from the Eighth thoracic ganglion, Fifth thoracic ganglion, Fourth thoracic ganglion, Ninth thoracic ganglion, Seventh thoracic ganglion, Sixth thoracic ganglion, Twelfth thoracic ganglion, Tenth thoracic ganglion and Eleventh thoracic ganglion.
T10 sympathetic chain ganglion T11 sympathetic chain ganglion T12 sympathetic chain ganglion T4 sympathetic chain ganglion T5 sympathetic chain ganglion T6 sympathetic chain ganglion T7 sympathetic chain ganglion T8 sympathetic chain ganglion T9 sympathetic chain ganglion (with-axon-in nerve) (with-axon-presynaptic-element-in eccrine sweat gland of the trunk) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from Eighth thoracic ganglion or Eleventh thoracic ganglion or Fifth thoracic ganglion or Fourth thoracic ganglion or Ninth thoracic ganglion or Seventh thoracic ganglion or Sixth thoracic ganglion or Tenth thoracic ganglion or Twelfth thoracic ganglion to eccrine sweat gland of the trunk via nerve
Intermediolateral cell column of T10-L2 to sympathetic trunk ganglia of T10-L2 via white communicating rami
In human, the sympathetic pre-ganglionic connection goes from Intermediolateral nucleus of eleventh thoracic segment or Intermediolateral nucleus of first lumbar segment or Intermediolateral nucleus of second lumbar segment or Intermediolateral nucleus of tenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to Eleventh thoracic ganglion or First lumbar ganglion or Second lumbar ganglion or Tenth thoracic ganglion or Twelfth thoracic ganglion via white communicating ramus of eleventh thoracic spinal nerve, white communicating ramus of first lumbar spinal nerve, white communicating ramus of second lumbar spinal nerve, white communicating ramus of tenth thoracic spinal nerve, white communicating ramus of twelfth thoracic spinal nerve. This connection projects from the Intermediolateral nucleus of eleventh thoracic segment, Intermediolateral nucleus of first lumbar segment, Intermediolateral nucleus of second lumbar segment, Intermediolateral nucleus of tenth thoracic segment and Intermediolateral nucleus of twelfth thoracic segment.
Intermediolateral nucleus of eleventh thoracic segment Intermediolateral nucleus of first lumbar segment Intermediolateral nucleus of second lumbar segment Intermediolateral nucleus of tenth thoracic segment Intermediolateral nucleus of twelfth thoracic segment (with-axons-in white communicating ramus of eleventh thoracic spinal nerve white communicating ramus of first lumbar spinal nerve white communicating ramus of second lumbar spinal nerve white communicating ramus of tenth thoracic spinal nerve white communicating ramus of twelfth thoracic spinal nerve) (with-axon-presynaptic-element-in L1 sympathetic chain ganglion L2 sympathetic chain ganglion T10 sympathetic chain ganglion T11 sympathetic chain ganglion T12 sympathetic chain ganglion) (projecting-onto neuron type swglnd 163) neuron (implies Homo sapiens Sympathetic Pre-Ganglionic)
from Intermediolateral nucleus of eleventh thoracic segment or Intermediolateral nucleus of first lumbar segment or Intermediolateral nucleus of second lumbar segment or Intermediolateral nucleus of tenth thoracic segment or Intermediolateral nucleus of twelfth thoracic segment to Eleventh thoracic ganglion or First lumbar ganglion or Second lumbar ganglion or Tenth thoracic ganglion or Twelfth thoracic ganglion via white communicating ramus of eleventh thoracic spinal nerve, white communicating ramus of first lumbar spinal nerve, white communicating ramus of second lumbar spinal nerve, white communicating ramus of tenth thoracic spinal nerve, white communicating ramus of twelfth thoracic spinal nerve
sympathetic trunk ganglia of T10-L2 to eccrine sweat glands of the skin of the lower limb via nerves
In human, the sympathetic post-ganglionic connection goes from Eleventh thoracic ganglion or First lumbar ganglion or Second lumbar ganglion or Tenth thoracic ganglion or Twelfth thoracic ganglion to eccrine sweat gland of the lower limb via nerve. This connection projects from the First lumbar ganglion, Second lumbar ganglion, Twelfth thoracic ganglion, Tenth thoracic ganglion and Eleventh thoracic ganglion.
L1 sympathetic chain ganglion L2 sympathetic chain ganglion T10 sympathetic chain ganglion T11 sympathetic chain ganglion T12 sympathetic chain ganglion (with-axon-in nerve) (with-axon-presynaptic-element-in eccrine sweat gland of the lower limb) neuron (implies Homo sapiens Sympathetic Post-Ganglionic)
from Eleventh thoracic ganglion or First lumbar ganglion or Second lumbar ganglion or Tenth thoracic ganglion or Twelfth thoracic ganglion to eccrine sweat gland of the lower limb via nerve
ProteinFluorescingInSpectrumRed (indicator)
parasympathetic part of autonomic division of nervous system
pars parasympathica divisionis autonomici systematis nervosi
structure with developmental contribution from neural crest
autonomic division of peripheral nervous system
autonomic part of peripheral nervous system
divisio autonomica systematis nervosi peripherici
pars autonomica systematis nervosi peripherici
somatic nervous system, somatic division
somatic part of peripheral nervous system
pars sympathica divisionis autonomici systematis nervosi
sympathetic part of autonomic division of nervous system
organ region with floating fiat boundary
camera-type eye plus associated structures
subdivision of organism along main body axis
proximo-distal subdivision of respiratory tract
central nervous system cell part cluster
alimentary part of gastrointestinal system
ophthalmic division of fifth cranial nerve
ophthalmic division of trigeminal nerve (V1)
ophthalmic division of trigeminal nerve (Va)
mucosa of organ of apparatus respiratorius
mucous membrane of apparatus respiratorius
mandibular division of fifth cranial nerve
mandibular division of trigeminal nerve [Vc; V3]
maxillary division of fifth cranial nerve
maxillary division of trigeminal nerve (Vb; V2)
reproductive system organ of male organism
central nervous system gray matter layer
female organism reproductive system organ
reproductive structure of female organism
reproductive system organ of female organism
tubular parts of female reproductive system
internal genitalia of female reproductive system
external genitalia of female reproductive system
typus irregularis (textus connectivus collagenosus compactus)
pectoral girdle and thoracic body wall skeletal muscle
pelvic girdle plus posterior limb or fin
epithelial tissue of gastrointestinal system
gastrointestinal system epithelial tissue
endothelium of irregular blood filled space
muscle organ of abdominal segment of trunk
columnar epithelium of the fallopian tube
anal part of perineum skeletal muscle tissue
skeletal muscle of anal part of perineum
skeletal muscle tissue of anal part of perineum
muscle of posterior compartment of hindlimb stylopod
muscle of posterior compartment of thigh
muscularis compartimentum femoris posterius
muscle of upper or lower hindlimb segment
pectoral girdle plus anterior limb or fin
pectoral girdle plus pectoral limb or fin
manual digit 1 ( phalanges plus metapodial) plus soft tissue
joint of terminal segment of free upper limb
joint of limb of distal free limb segment
cranial ganglion part of peripheral nervous system
cochlear nucleus of eighth cranial nerve
visual processing part of nervous system
pseudostratified ciliated columnar epithelium
epithelium pseudostratificatum columnare ciliatum (trachea et bronchi)
formatio reticularis tegmenti mesencephali
columna grisea posterior medullae spinalis
primary subdivision of cranial skeletal system
glandulae urethrales urethrae masculinae
manual digit (phalangeal portion) plus soft tissue
digit (phalangeal portion) plus soft tissue
manual digit ( phalanges plus metapodial) plus soft tissue
predominantly gray regional part of telencephalon
digit ( phalanges plus metapodial) plus soft tissue
predominantly white regional part of superior colliculus
white matter layer of superior colliculus
segmenta cervicalia medullae spinalis [1-8
predominantly white regional part of pontine tegmentum
segmenta lumbalia medullae spinalis [1-5]
cytoarchitectural part of the cerebellar cortex
segmenta thoracica medullae spinalis [1-12]
epithelium of terminal part of digestive tract
cavity of pericardial sac meso-epithelium
meso-epithelium of cavity of pericardial sac
mesothelium of cavity of pericardial sac
blood vessel of abdominal segment of trunk
digit of terminal segment of free upper limb skin
skin of digit of terminal segment of free upper limb
skin of terminal segment of free upper limb digit
terminal segment of free upper limb digit skin
manual digit 2 ( phalanges plus metapodial) plus soft tissue
manual digit 3 ( phalanges plus metapodial) plus soft tissue
manual digit III plus metapodial segment
bone organ of abdominal segment of trunk
cytoarchitectural part of olfactory bulb
smooth muscle tissue of gastrointestinal system
nerve trunk of sympathetic nervous system
nerve trunk of sympathetic part of autonomic division of nervous system
apparatus respiratorius epithelial tissue
epithelial tissue of apparatus respiratorius
epithelial tissue of upper respiratory tract
upper respiratory tract epithelial tissue
fundus gastricus (ventricularis) mucosa of organ
fundus gastricus (ventricularis) mucous membrane
fundus gastricus (ventricularis) organ mucosa
mucosa of fundus gastricus (ventricularis)
mucosa of organ of fundus gastricus (ventricularis)
mucous membrane of fundus gastricus (ventricularis)
organ mucosa of fundus gastricus (ventricularis)
hippocampus stratum lacunosum moleculare
stratum hippocampi moleculare et substratum lacunosum
subdivision of spinal cord ventral column
digit 1 ( phalanges plus metapodial) plus soft tissue
digit 2 ( phalanges plus metapodial) plus soft tissue
digit 3 ( phalanges plus metapodial) plus soft tissue
subdivision of organism along appendicular axis
cytoarchitectural part of superior colliculus
central nervous system white matter layer
lamina propria of mucosa of large intestine
skeleton of anterior limb/fin and girdle
skeleton of posterior limb/fin and girdle
longitudinal muscle layer of muscular coat
large intestine smooth muscle longitudinal layer
longitudinal muscle layer of zone of large intestine
perimysial connective tissue of subepicardium
gray matter of lobe of cerebral hemisphere
ramus zygomaticotemporalis (Nervus zygomaticus)
ramus zygomaticotemporalis nervus zygomatici
zygomaticotemporal branch of zygomatic nerve
Left Posterior Superior anatomical axis alignment
Posterior Ventral Right anatomical axis alignment
Right Anterior Dorsal anatomical axis alignment
Right Anterior Superior anatomical axis alignment
An ontology model for anatomical atlases.
Jan G. Bjaalie - https://orcid.org/0000-0001-7899-906X
Timo Dickscheid - https://orcid.org/0000-0002-9051-3701
Heidi Kleven - https://orcid.org/0000-0002-3710-321X
Trygve B. Leergaard - https://orcid.org/0000-0001-5965-8470
researchers using or creating anatomical atlases
OWL restrictions are used, however there are no general patterns that are employed at scale.
`atom:' and `ilxtr:' identifiers are not currently dereferenceable, but they are planned to be.
Specific ontology ids are never deprecated.
`rdfs:label' should be present. Old iris that are equivalent classes may not contain a label.
Entities are named in English according to the technical terminology used in the field.
No formal external evaluation has been conducted, however external groups have applied the model to their atlases. See https://doi.org/10.1101/2023.01.22.525049
Identifiers should not be automatically generated. Human readable iris are created as needed.
There is a need to establish a minimal model for anatomical atlases for use in information systems. There is also a need to establish a shared vocabulary to facilitate communication between groups that are creating anatomical atlases that use slightly different words to describe the same things. Finally there is a need for such a model to provide a foundation for documenting the criteria used in the creation and versioning of atlases.
Scope: components of anatomical atlases, their parts, and metadata. Coverage: AtOM provides a core model for describing anatomical atlases.
AtOM is maintained as part of the NIF-Ontology.
Core OWL2 entities for describing anatomical atlases.
This is the core set of predicates used to model phenotypes and the parent class for phenotypes.
A taxonomy of phenotypes used to model biological types as collections of measurements.
The Simple SCKAN ontology provides a query-friendly layer on top of the NPO. It includes a set of simplified annotation properties derived from the complex OWL axioms in NPO. This ontology file requires importing npo.ttl.
Expresses a relation between a neuron population and the anatomical structure where its axon is located in.
Expresses a relation between a neuron population and the anatomical structure where it is connected to. This property is not used for direct assertions.
Expresses a relation between a neuron population and the anatomical structure where its axon sensory terminal (i.e., the axon sensory subcellular element) is located in.
Expresses a relation between a neuron population and the anatomical structure where its axon terminal (i.e., the axon presynaptic element) is located in.
Expresses a relation between a neuron population and the anatomical structure where its axon distally projects to the axon sensory terminal (i.e., the axon sensory subcellular element).
Expresses a relation between a neuron population and its circuit role phenotype. Possible phenotype values: Intrinsic, Motor, Sensory, and Projection.
Expresses a relationship between a neuron population and its non-locational phenotype. This is not used for direct assertions.
Expresses a relation between a neuron population and the anatomical structure where its dendrite is located in.
Expresses a relationship to specify the synaptic forward connection from a presynaptic neuron population to a postsynaptic neuron population.
Expresses a relation between a neuron population and its immediate effect on postsynaptic cells. Possible phenotype value: Excitatory or Inhibitory.
Expresses a relationship between a neuron population and its Autonomic Nervous System (ANS) phenotype. This property is used to specify the phenotype associated with distinct ANS subdivisions. Possible phenotype values: parasympathetic, sympathetic, pre- or post ganglionic, and entaric phenotypes.
Expresses a relationship between a neuron population and a biological sex. This is used when a neuron population has been observed in a specific sex.
Expresses a relation between a neuron population and a brain region where the neuron population sends axons towards. Possible phenotype values: Spinal cord descending projection, Spinal cord ascending projection, Intestino fugal projection, Anterior projecting, Posterior projecting
Expresses a relation between a neuron population and the anatomical structure where its soma is located in.
Expresses a relationship between a neuron population and a taxon. Used when a neuron population has been observed in a specific species. Phossible phenotype value: species from NCBI Taxonomy.
pulmonary artery (tunica adventitia of artery)
ascending aorta (aorta tunica adventitia)
T2 segment of thoracic spinal cord (white matter of spinal cord)
T5 segment of thoracic spinal cord (white matter of spinal cord)
T6 segment of thoracic spinal cord (white matter of spinal cord)
C8 segment of cervical spinal cord (white matter of spinal cord)
C7 segment of cervical spinal cord (white matter of spinal cord)
T4 segment of thoracic spinal cord (white matter of spinal cord)
C6 segment of cervical spinal cord (white matter of spinal cord)
T3 segment of thoracic spinal cord (white matter of spinal cord)
T1 segment of thoracic spinal cord (white matter of spinal cord)
C7 segment of cervical spinal cord (lamina I of gray matter of spinal cord)
C7 segment of cervical spinal cord (lamina VII of gray matter of spinal cord)
C7 segment of cervical spinal cord (spinal cord gray commissure)
C4 segment of cervical spinal cord (white matter of spinal cord)
C5 segment of cervical spinal cord (white matter of spinal cord)
C1 segment of cervical spinal cord (white matter of spinal cord)
C2 segment of cervical spinal cord (white matter of spinal cord)
C3 segment of cervical spinal cord (white matter of spinal cord)
T3 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord)
C8 segment of cervical spinal cord (lamina VII of gray matter of spinal cord)
T5 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord)
T4 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord)
T1 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord)
T2 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord)
T6 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord)
medulla oblongata (Neural tissue of medulla)
common carotid artery plus branches (wall of common carotid artery)
internal carotid artery (wall of internal carotid artery)
T1 segment of thoracic spinal cord (Neural tissue of T1)
C4 segment of cervical spinal cord (Neural tissue of C4)
C5 segment of cervical spinal cord (Neural tissue of C5)
T9 segment of thoracic spinal cord (white matter of spinal cord)
T10 segment of thoracic spinal cord (white matter of spinal cord)
L1 segment of lumbar spinal cord (white matter of spinal cord)
T12 segment of thoracic spinal cord (white matter of spinal cord)
T11 segment of thoracic spinal cord (white matter of spinal cord)
T13 segment of thoracic spinal cord (white matter of spinal cord)
T7 segment of thoracic spinal cord (white matter of spinal cord)
T8 segment of thoracic spinal cord (white matter of spinal cord)
T7 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord)
T13 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord)
T9 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord)
T12 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord)
T11 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord)
T8 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord)
L1 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord)
T10 segment of thoracic spinal cord (lamina VII of gray matter of spinal cord)
terminal bronchiole (Wall of terminal bronchiole)
neck of urinary bladder (connective tissue)
fundus of urinary bladder (connective tissue)
fundus of urinary bladder (smooth muscle tissue)
neck of urinary bladder (smooth muscle tissue)
S1 segment of sacral spinal cord (white matter of spinal cord)
L6 segment of lumbar spinal cord (white matter of spinal cord)
Arteriole in connective tissue of bladder neck (wall of blood vessel)
Arteriole in connective tissue of bladder dome (wall of blood vessel)
L6 segment of lumbar spinal cord (lamina V of gray matter of spinal cord)
S1 segment of sacral spinal cord (substantia gelatinosa)
S1 segment of sacral spinal cord (lamina V of gray matter of spinal cord)
L6 segment of lumbar spinal cord (spinal cord gray commissure)
L6 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord)
L6 segment of lumbar spinal cord (substantia gelatinosa)
S1 segment of sacral spinal cord (lamina VII of gray matter of spinal cord)
L6 segment of lumbar spinal cord (lamina I of gray matter of spinal cord)
S1 segment of sacral spinal cord (lamina I of gray matter of spinal cord)
S1 segment of sacral spinal cord (spinal cord gray commissure)
L2 segment of lumbar spinal cord (white matter of spinal cord)
L2 segment of lumbar spinal cord (substantia gelatinosa)
L2 segment of lumbar spinal cord (lamina I of gray matter of spinal cord)
L2 segment of lumbar spinal cord (lamina V of gray matter of spinal cord)
L1 segment of lumbar spinal cord (lamina V of gray matter of spinal cord)
L2 segment of lumbar spinal cord (spinal cord gray commissure)
L2 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord)
L1 segment of lumbar spinal cord (substantia gelatinosa)
L1 segment of lumbar spinal cord (lamina I of gray matter of spinal cord)
L1 segment of lumbar spinal cord (spinal cord gray commissure)
L4 segment of lumbar spinal cord (white matter of spinal cord)
L5 segment of lumbar spinal cord (white matter of spinal cord)
L3 segment of lumbar spinal cord (white matter of spinal cord)
L5 segment of lumbar spinal cord (lamina IX of gray matter of spinal cord)
L6 segment of lumbar spinal cord (lamina IX of gray matter of spinal cord)
splenic artery (tunica adventitia of blood vessel)
superior mesenteric artery (tunica adventitia of blood vessel)
celiac trunk (tunica adventitia of blood vessel)
inferior pancreaticoduodenal artery (tunica adventitia of blood vessel)
hepatic artery (tunica adventitia of blood vessel)
pyloric antrum (gastrointestinal system serosa)
Proximal half of duodenum (stomach smooth muscle outer longitudinal layer)
Proximal half of duodenum (gastrointestinal system serosa)
pancreatic acinus (basement membrane of epithelium)
pyloric antrum (stomach smooth muscle outer longitudinal layer)
pancreatic acinus (Epithelium of pancreatic acinus)
Proximal half of duodenum (myenteric nerve plexus)
L3 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord)
L4 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord)
descending colon (Lamina propria mucosae of descending colon)
descending colon (Submucosal nerve plexus of descending colon)
descending colon (Myenteric nerve plexus of descending colon)
descending colon (Serosa of descending colon)
L3 segment of lumbar spinal cord (lamina I of gray matter of spinal cord)
L4 segment of lumbar spinal cord (lamina V of gray matter of spinal cord)
L5 segment of lumbar spinal cord (lamina I of gray matter of spinal cord)
L4 segment of lumbar spinal cord (lamina I of gray matter of spinal cord)
L5 segment of lumbar spinal cord (lamina V of gray matter of spinal cord)
L5 segment of lumbar spinal cord (lamina VII of gray matter of spinal cord)
L4 segment of lumbar spinal cord (spinal cord gray commissure)
L3 segment of lumbar spinal cord (spinal cord gray commissure)
L3 segment of lumbar spinal cord (substantia gelatinosa)
L5 segment of lumbar spinal cord (substantia gelatinosa)
L5 segment of lumbar spinal cord (spinal cord gray commissure)
T13 segment of thoracic spinal cord (substantia gelatinosa)
L4 segment of lumbar spinal cord (substantia gelatinosa)
T13 segment of thoracic spinal cord (spinal cord gray commissure)
T13 segment of thoracic spinal cord (lamina I of gray matter of spinal cord)
L3 segment of lumbar spinal cord (lamina V of gray matter of spinal cord)
T13 segment of thoracic spinal cord (lamina V of gray matter of spinal cord)
descending colon (Circular muscle layer of descending colon)
descending colon (Longitudinal muscle layer of descending colon)
Arteriole in submucous nerve plexus of descending colon (wall of blood vessel)
Arteriole in serosa of descending colon (wall of blood vessel)
Arteriole in myenteric nerve plexus of descending colon (wall of blood vessel)
Arteriole in longitudinal muscle layer of descending colon (wall of blood vessel)
Arteriole in lamina propria of mucosa of descending colon (wall of blood vessel)
Arteriole in circular muscle layer of descending colon (wall of blood vessel)
T7 segment of thoracic spinal cord (neural tissue)
T6 segment of thoracic spinal cord (neural tissue)
T5 segment of thoracic spinal cord (neural tissue)
T8 segment of thoracic spinal cord (neural tissue)
proximal stomach (stomach smooth muscle outer longitudinal layer)
proximal stomach (myenteric nerve plexus of stomach)
distal stomach (stomach smooth muscle inner oblique layer)
distal stomach (muscularis mucosae of stomach)
distal stomach (stomach smooth muscle outer longitudinal layer)
distal stomach (stomach smooth muscle circular layer)
distal stomach (myenteric nerve plexus of stomach)
proximal stomach (stomach smooth muscle circular layer)
lower esophagus (myenteric nerve plexus of lower esophagus)
proximal stomach (stomach smooth muscle inner oblique layer)
lower esophagus (esophagus smooth muscle longitudinal layer)
proximal stomach (muscularis mucosae of stomach)