format-version: 1.2 date: 29:03:2018 15:54 saved-by: naama auto-generated-by: OBO-Edit 2.3.1 default-namespace: solanaceae_phenotype ontology: TEMP owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(AnnotationProperty())\n\n\nAnnotationAssertion( \"SP:0000421\"^^xsd:string)\nAnnotationAssertion( \"SP:0000422\"^^xsd:string)\nAnnotationAssertion( \"SP:0000422\"^^xsd:string)\nAnnotationAssertion( \"SP:0000472\"^^xsd:string)\nAnnotationAssertion( \"SP:0000080\"^^xsd:string)\nAnnotationAssertion( \"SP:0000080\"^^xsd:string)\nAnnotationAssertion( \"SP:0000080\"^^xsd:string)\nAnnotationAssertion( \"SP:0000080\"^^xsd:string)\nAnnotationAssertion( \"SP:0000080\"^^xsd:string)\n) [Term] id: SP:0000000 name: placenta color def: "The color of the placenta." [SGN:NM] xref: PATO:0000014 is_a: SP:0000012 ! fruit color [Term] id: SP:0000001 name: seedling synonym: "TO:0000620" RELATED [] xref: PO:0007057 is_a: SP:0000205 ! whole plant phenotype [Term] id: SP:0000002 name: plant size synonym: "TO:0000207" RELATED [] xref: PATO:0000117 xref: PO:0000003 xref: PO:0007130 xref: TO:0000207 is_a: SP:0000205 ! whole plant phenotype [Term] id: SP:0000003 name: plant habit synonym: "TO:0000357" RELATED [] xref: PO:0007134 is_a: SP:0000205 ! whole plant phenotype [Term] id: SP:0000004 name: leaf morphology synonym: "TO:0000419" RELATED [] xref: PATO:0000051 xref: PO:0001050 xref: PO:0009025 is_a: SP:0000108 ! leaf [Term] id: SP:0000005 name: leaf color synonym: "TO:0000326" RELATED [] xref: PATO:0000014 xref: PO:0005645 is_a: SP:0000108 ! leaf [Term] id: SP:0000006 name: flowering def: "Traits and phenotypes related to flowering." [] xref: PO:0007016 xref: PO:0009046 is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000007 name: inflorescence synonym: "TO:0000373" RELATED [] xref: PO:0001083 xref: PO:0009049 relationship: part_of SP:0000192 ! shoot phenotype [Term] id: SP:0000008 name: flower morphology synonym: "TO:0000499" RELATED [] xref: PATO:0000051 xref: PO:0007615 xref: PO:0009046 relationship: part_of SP:0000115 ! flower [Term] id: SP:0000009 name: flower color synonym: "TO:0000537" RELATED [] xref: PATO:0000014 xref: PO:0007600 xref: PO:0009046 relationship: part_of SP:0000115 ! flower [Term] id: SP:0000010 name: fruit size xref: PATO:0000117 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000011 ! fruit morphology [Term] id: SP:0000011 name: fruit morphology xref: PATO:0000051 xref: PO:0007042 xref: PO:0009001 relationship: part_of SP:0000037 ! fruit [Term] id: SP:0000012 name: fruit color xref: PATO:0000014 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 relationship: part_of SP:0000037 ! fruit [Term] id: SP:0000013 name: fruit ripening def: "Fruit ripening process." [SGN:NM] xref: PO:0007010 xref: PO:0009001 is_a: SP:0000037 ! fruit [Term] id: SP:0000014 name: sterility synonym: "TO:0000485" RELATED [] xref: PO:0007616 xref: PO:0009046 is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000015 name: disease and stress response synonym: "TO:0000063" RELATED [] xref: PO:0000003 xref: PO:0007130 xref: PO:0007134 is_a: SP:0000205 ! whole plant phenotype [Term] id: SP:0000016 name: anthocyanin content synonym: "TO:0000071" RELATED [] is_a: SP:0000019 ! biochemical metabolites [Term] id: SP:0000017 name: chlorophyll content synonym: "TO:0000495" RELATED [] is_a: SP:0000019 ! biochemical metabolites [Term] id: SP:0000018 name: hair modifications synonym: "trichomes" RELATED [] xref: PO:0000282 is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000019 name: biochemical metabolites synonym: "TO:0000277" RELATED [] is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000020 name: root modifications xref: PO:0007520 xref: PO:0009005 is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000021 name: extremely small plant xref: PATO:0000969 xref: PO:0000003 xref: PO:0007130 xref: PO:0007134 is_a: SP:0000401 ! qualitative plant size [Term] id: SP:0000022 name: small plant xref: PATO:0000587 xref: PO:0000003 xref: PO:0007130 xref: PO:0007134 is_a: SP:0000401 ! qualitative plant size [Term] id: SP:0000023 name: large plant xref: PATO:0000586 xref: PO:0000003 xref: PO:0007130 xref: PO:0007134 is_a: SP:0000401 ! qualitative plant size [Term] id: SP:0000024 name: seed morphology xref: PATO:0000051 xref: PO:0001170 xref: PO:0009010 is_a: SP:0000100 ! seed [Term] id: SP:0000025 name: nutritional or hormonal disorder is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000026 name: virescent leaf def: "Chlorophyll deficiency localized at growing point." [TGRC:F] xref: PATO:0001941 xref: PO:0001050 xref: PO:0005645 is_a: SP:0000054 ! yellow-green leaf [Term] id: SP:0000027 name: disease resistance xref: PO:0000003 xref: PO:0007130 xref: PO:0007134 is_a: SP:0000015 ! disease and stress response [Term] id: SP:0000028 name: brown green leaf color def: "Olive, brown, blue-green leaf." [TGRC:U] xref: PATO:0001942 xref: PO:0001050 xref: PO:0005645 is_a: SP:0000471 ! leaf color phenotypic values [Term] id: SP:0000029 name: allozyme variant is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000030 name: vascular tissue is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000031 name: internode length synonym: "TO:0000145" RELATED [] xref: PATO:0000122 xref: PO:0007089 xref: PO:0020142 is_a: SP:0000003 ! plant habit [Term] id: SP:0000032 name: branching synonym: "TO:0000361" RELATED [] xref: PO:0006343 xref: PO:0007073 is_a: SP:0000003 ! plant habit [Term] id: SP:0000033 name: aborted growth synonym: "TO:0000195" RELATED [] xref: PATO:0000297 xref: PO:0007112 xref: PO:0009006 is_a: SP:0000003 ! plant habit [Term] id: SP:0000034 name: other plant habit def: "OBSOLETE. Use parent term instead SP:0000003." [SGN:NM] xref: PO:0007134 is_obsolete: true [Term] id: SP:0000035 name: nutritional disorder is_a: SP:0000019 ! biochemical metabolites [Term] id: SP:0000036 name: hormonal disorder is_a: SP:0000019 ! biochemical metabolites [Term] id: SP:0000037 name: fruit def: "Fruit related traits and phenotypes." [SP:NM] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000038 name: fruit shape def: "The shape of a fruit." [SGN:NM] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000011 ! fruit morphology [Term] id: SP:0000039 name: fruit shape index def: "Shape ratio." [SGN:EVDK] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000038 ! fruit shape [Term] id: SP:0000040 name: fruit shape index external 1 def: "The ratio of the maximum fruit height to maximum fruit width." [SGN:EVDK] synonym: "fruit shape index 1" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000039 ! fruit shape index [Term] id: SP:0000041 name: leaf width def: "Leaf width in cm." [SGN:EVDK] synonym: "TO:0000370" RELATED [] xref: PATO:0000921 xref: PO:0001052 xref: PO:0009025 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000042 ! leaf size [Term] id: SP:0000042 name: leaf size synonym: "TO:0000542" RELATED [] xref: PATO:0000117 xref: PO:0001052 xref: PO:0009025 is_a: SP:0000004 ! leaf morphology [Term] id: SP:0000044 name: leaf texture xref: PATO:0000150 xref: PO:0001050 xref: PO:0006016 is_a: SP:0000004 ! leaf morphology [Term] id: SP:0000045 name: leaf complexity alt_id: SP:0000043 synonym: "leaf complexity" EXACT [] xref: PATO:0001502 xref: PO:0001050 xref: PO:0009025 is_a: SP:0000004 ! leaf morphology [Term] id: SP:0000046 name: fruit shape index external 2 def: "The ratio of fruit height mid-width to fruit width mid-height." [SGN:EVDK] synonym: "fruit shape index 2" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000039 ! fruit shape index [Term] id: SP:0000047 name: tuber def: "Swollen storage shoot with determinate growth." [POC:curators] xref: PO:0004547 "subterranean tuber" is_a: SP:0000192 ! shoot phenotype [Term] id: SP:0000048 name: shape index internal def: "Internal ellipse height/width ratio." [SGN:EVDK] synonym: "pei" RELATED [] synonym: "pericarp elongation index" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000039 ! fruit shape index [Term] id: SP:0000049 name: fruit shape triangle def: "Proximal/distal width ratio. The ratio of the width at fruit proximal end to the width at the fruit distal end." [SGN:EVDK] synonym: "tri" RELATED [] xref: PATO:0001875 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000038 ! fruit shape [Term] id: SP:0000050 name: fruit shape circular def: "Fitting precision R2. How well the boundary of a perfect circle fits the boundary of a fruit. The ratio of the error resulting from a best-fit circle to the area of the fruit. Error is the average magnitude of residuals (Res) along the fruit perimeter, divided by the radius of the circle. Smaller values indicate that the fruit is more Circular." [SGN:EVDK] synonym: "cir" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000038 ! fruit shape [Term] id: SP:0000051 name: purple leaf xref: PATO:0000951 xref: PO:0001050 xref: PO:0005645 is_a: SP:0000471 ! leaf color phenotypic values [Term] id: SP:0000052 name: white leaf xref: PATO:0000323 xref: PO:0001050 xref: PO:0005645 is_a: SP:0000471 ! leaf color phenotypic values [Term] id: SP:0000053 name: yellow leaf xref: PATO:0000342 xref: PO:0001050 xref: PO:0005645 is_a: SP:0000471 ! leaf color phenotypic values [Term] id: SP:0000054 name: yellow-green leaf xref: PATO:0001941 xref: PO:0001050 xref: PO:0005645 is_a: SP:0000471 ! leaf color phenotypic values [Term] id: SP:0000055 name: dull green/grey leaf xref: PATO:0000950 xref: PO:0001050 xref: PO:0005645 is_a: SP:0000471 ! leaf color phenotypic values [Term] id: SP:0000056 name: dark green leaf xref: PATO:0001249 xref: PO:0001050 xref: PO:0005645 is_a: SP:0000471 ! leaf color phenotypic values [Term] id: SP:0000057 name: leaf variegation synonym: "TO:0000069" RELATED [] xref: PATO:0001533 xref: PO:0001050 xref: PO:0005645 is_a: SP:0000471 ! leaf color phenotypic values [Term] id: SP:0000058 name: fruit shape eccentric def: "The asymmetry of the fruit. Height of internal ellipse / total height." [SGN:EVDK] synonym: "ecc" EXACT [] synonym: "eccenticity" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000038 ! fruit shape [Term] id: SP:0000059 name: obovoid def: "1/2fOb(y) x Tob. The degree of pear-shapeness. If the area of the fruit is greater below mid-height than above it, then Obovoid is calculated from the maximum width (W), the height at which the maximum width occurs (y), the average width above that height (w1), and the average width below that height (w2), and a scaling function scale_ob as: Obovoid = 1/2 * scale_ob(y) * (1- w1/W + w2/W) If Obovoid > 0, subtract 0.4. Otherwise, Obovoid is 0." [SGN:EVDK] synonym: "obo" RELATED [] synonym: "obovate" RELATED [] synonym: "pear shape" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000058 ! fruit shape eccentric [Term] id: SP:0000060 name: ovoid def: "1/2fOv(y) x Tov. The opposite of pear-shapeness. If the area of the fruit is greater above mid-height than below it, then Ovoid is calculated from the maximum width (W), the height at which the maximum width occurs (y), the average width above that height (w1), and the average width below that height (w2), and a scaling function scale_ov as:Ovoid = 1/2 *scale_ov(y) * (1 - w2/W + w1/W). If Ovoid > 0, subtract 0.4. Otherwise, Ovoid is 0." [SGN:EVDK] synonym: "ovate" RELATED [] synonym: "ovo" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000058 ! fruit shape eccentric [Term] id: SP:0000061 name: flowering timing synonym: "TO:0000344" RELATED [] synonym: "TO:0000366" RELATED [] xref: PATO:0000165 xref: PO:0007016 xref: PO:0009046 relationship: part_of SP:0000006 ! flowering [Term] id: SP:0000062 name: heart shape degree. Calculation. def: "0.25 x [1/2fOv(y) x Tov] + 20 x [(H_sl + H_sr)/2*H] the degree of heart shapeness." [SGN:EVDK] synonym: "hrt" RELATED [] xref: PATO:0000948 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000038 ! fruit shape [Term] id: SP:0000063 name: distal eccentricity index def: "Internal ellipse height / height top ellipse-bottom fruit ratio." [SGN:EVDK] synonym: "dec" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000058 ! fruit shape eccentric [Term] id: SP:0000064 name: proximal eccentricity index def: "internal ellipse height/height bottom ellipse-top fruit ratio ." [SGN:EVDK] synonym: "pec" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000058 ! fruit shape eccentric [Term] id: SP:0000065 name: horizontal asymmetry def: "[sum|n-ny|]/L. Degree of horizontal asymmetry ." [SGN:EVDK] synonym: "hor" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000058 ! fruit shape eccentric [Term] id: SP:0000066 name: vertical asymmetry def: "[sum|m-mi|]/L. Degree of vertical asymmetry. The average distance (Res_w) between a vertical line through the fruit at mid-width and the midpoint of the fruit width at each height." [SGN:EVDK] synonym: "ver" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000058 ! fruit shape eccentric [Term] id: SP:0000067 name: fruit shape ellipsoid def: "Fitting precision R2. How well the boundary of a perfect ellipse fits the boundary of a fruit. The ratio of the error resulting from a best-fit ellipse to the area of the fruit. Error is the average magnitude of residuals (Res) along the fruit perimeter, divided by the length of the major (longer) axis of the ellipse. Smaller values indicate that the fruit is more ellipsoid." [SGN:EVDK] synonym: "ell" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000038 ! fruit shape [Term] id: SP:0000068 name: fruit shape rectangular def: ".The ratio of the area of the rectangle bounding the fruit to the area of the rectangle bounded by the fruit." [PMID:16684933] synonym: "rec" RELATED [] xref: PATO:0001867 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000038 ! fruit shape [Term] id: SP:0000069 name: fruit end def: "The ends of the fruit." [SGN:EVDK] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 relationship: part_of SP:0000037 ! fruit [Term] id: SP:0000070 name: distal fruit end shape def: "The shape of the distal end of the fruit." [SGN:EVDK] synonym: "blossom end" RELATED [] xref: PATO:0000052 xref: PATO:0001234 xref: PO:0007010 xref: PO:0007042 xref: PO:0008001 is_a: SP:0000038 ! fruit shape is_a: SP:0000179 ! distal fruit end [Term] id: SP:0000071 name: inflorescence structure xref: PATO:0000141 xref: PO:0001083 xref: PO:0009049 is_a: SP:0000007 ! inflorescence [Term] id: SP:0000072 name: proximal fruit end shape def: "The shape of the proximal end of the fruit." [SGN:EVDK] synonym: "stem end" RELATED [] xref: PATO:0000052 xref: PATO:0001195 xref: PO:0007010 xref: PO:0007042 xref: PO:0008002 is_a: SP:0000038 ! fruit shape is_a: SP:0000180 ! proximal fruit end [Term] id: SP:0000073 name: distal fruit end angle def: "Angle between intersection of two lines representing the slope at the fruit distal end." [SGN:evdk] synonym: "dan" RELATED [] xref: PATO:0000133 xref: PO:0007010 xref: PO:0007042 xref: PO:0008001 is_a: SP:0000070 ! distal fruit end shape [Term] id: SP:0000074 name: proximal fruit end angle def: "Angle between intersection of two lines representing the slope of the proximal fruit end." [SGN:EVDK] synonym: "pan" RELATED [] xref: PATO:0000133 xref: PATO:0001195 xref: PO:0007010 xref: PO:0007042 xref: PO:0008002 is_a: SP:0000072 ! proximal fruit end shape [Term] id: SP:0000075 name: distal fruit end blockiness def: "Distal fruit end width/mid width ratio. The ratio of the width at the distal fruit end to the mid-fruit width." [SGN:EVDK] synonym: "dblk" RELATED [] xref: PATO:0001234 xref: PO:0007010 xref: PO:0007042 xref: PO:0008001 relationship: part_of SP:0000070 ! distal fruit end shape [Term] id: SP:0000076 name: distal fruit end indentation def: "Fruit end indented area/total fruit area. The ratio of the area of the distal indentation (bounded by the distal protrusion points, D_sl and D_sr) to the total area of the fruit, multiplied by 10. T.A. version 3.0." [SGN:EVDK] synonym: "diar" RELATED [] xref: PATO:0001234 xref: PO:0007010 xref: PO:0007042 xref: PO:0008001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000070 ! distal fruit end shape [Term] id: SP:0000077 name: distal fruit end protrusion def: "Distal fruit end protruded area/total fruit area. The ratio of the area of the distal protrusion (bounded by the distal protrusion points, D_sl and D_sr) to the total area of the fruit, multiplied by 10. T.A. version 3.0 ." [SGN:EVDK] synonym: "nipple tip" RELATED [] xref: PATO:0001234 xref: PO:0007010 xref: PO:0007042 xref: PO:0008001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000070 ! distal fruit end shape [Term] id: SP:0000078 name: proximal fruit end blockiness def: "The ratio of the fruit width at the proximal end to the width mid-height." [SGN:EVDK] synonym: "pblk" RELATED [] xref: PATO:0001195 xref: PO:0007010 xref: PO:0007042 xref: PO:0008002 relationship: part_of SP:0000072 ! proximal fruit end shape [Term] id: SP:0000079 name: proximal fruit end indentation def: "Proximal fruit end indented area/total fruit area. The ratio of the area of the proximal indentation (bounded by the proximal shoulder points, P_sl and P_sr) to the total area of the fruit, multiplied by 10. T.A. version 3.0 ." [SGN:EVDK] xref: PATO:0001195 xref: PO:0007010 xref: PO:0007042 xref: PO:0008002 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000072 ! proximal fruit end shape [Term] id: SP:0000080 name: fruit mass, weight in grams def: "The mass of the fruit measured in grams." [SGN:EVDK] synonym: "fruit weight" RELATED [] synonym: "fw" RELATED [] xref: PATO:0000125 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000037 ! fruit created_by: naama creation_date: 2008-02-12T03:11:00Z [Term] id: SP:0000081 name: homeotic mutation xref: PO:0007600 xref: PO:0009046 is_a: SP:0000008 ! flower morphology [Term] id: SP:0000082 name: flower organ size xref: PATO:0000117 xref: PO:0007600 xref: PO:0009046 is_a: SP:0000008 ! flower morphology [Term] id: SP:0000083 name: flower organ width xref: PATO:0000921 xref: PO:0007600 xref: PO:0009046 is_a: SP:0000082 ! flower organ size [Term] id: SP:0000084 name: other flower morphology def: "OBSOLETE. Replaced by parent term SP:0000008 flower morphology." [SGN:nm] xref: PO:0007600 is_obsolete: true [Term] id: SP:0000085 name: fruit area, measurement in square centimeters, cm^2 def: "The area of the fruit in cm^2." [SGN:EVDK] xref: PATO:0001323 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000010 ! fruit size created_by: naama creation_date: 2008-02-12T03:11:00Z [Term] id: SP:0000086 name: fruit length def: "The length of the fruit." [SGN:EVDK] synonym: "fruit height" EXACT [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000010 ! fruit size created_by: naama creation_date: 2008-02-12T03:11:00Z [Term] id: SP:0000087 name: fruit perimeter, measurement in centimeters def: "The maximum perimeter of the fruit in cm." [SGN:EVDK] synonym: "fruit circumference" RELATED [] synonym: "per" RELATED [] xref: PATO:0001711 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000010 ! fruit size created_by: naama creation_date: 2008-02-12T03:11:00Z [Term] id: SP:0000088 name: fruit width def: "The width of the fruit." [SGN:EVDK] synonym: "fd1" RELATED [] synonym: "fruit diameter" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000010 ! fruit size created_by: naama creation_date: 2008-02-12T03:11:00Z [Term] id: SP:0000089 name: fruit locule number, counting def: "The number of locules in the fruit. This data is taken in the transversal section." [SGN:EVDK] synonym: "lcn" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000011 ! fruit morphology created_by: naama creation_date: 2008-02-12T03:30:00Z [Term] id: SP:0000090 name: placenta area def: "The area of the placenta." [SGN:EVDK] xref: PO:0004535 xref: PO:0007010 xref: PO:0007042 is_a: SP:0000010 ! fruit size created_by: naama creation_date: 2008-02-13T09:41:00Z [Term] id: SP:0000091 name: white flower xref: PATO:0000323 xref: PO:0007600 xref: PO:0009046 is_a: SP:0000476 ! flower color phenotypic values [Term] id: SP:0000092 name: pale yellow flower xref: PATO:0001264 xref: PO:0007600 xref: PO:0009046 is_a: SP:0000228 ! yellow flower color [Term] id: SP:0000093 name: strong yellow flower xref: PATO:0001263 xref: PO:0007600 xref: PO:0009046 is_a: SP:0000228 ! yellow flower color [Term] id: SP:0000094 name: fruit color uniformity def: "The proportion of the 2D area of the red color epicarp out of the total epicarp area visible from a top view of the proximal fruit end." [SGN:EVDK] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000012 ! fruit color created_by: naama creation_date: 2008-02-13T10:05:00Z [Term] id: SP:0000095 name: pericarp area in square centimeter, cm^2 def: "The area of the pericarp (cm^2)." [SGN:EVDK] xref: PO:0007010 xref: PO:0007042 xref: PO:0009084 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000371 ! pericarp created_by: naama creation_date: 2008-02-12T03:36:00Z [Term] id: SP:0000096 name: septum and pericarp area, calculation in square centimeters, cm^2 def: "The sum of the areas of the septum and the pericarp in cm^2." [SGN:EVDK] xref: PO:0005008 xref: PO:0007010 xref: PO:0007042 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000010 ! fruit size created_by: naama creation_date: 2008-02-12T03:36:00Z [Term] id: SP:0000097 name: epicarp color xref: PATO:0000014 xref: PO:0007010 xref: PO:0007042 xref: PO:0009085 is_a: SP:0000012 ! fruit color created_by: naama creation_date: 2008-02-12T03:40:00Z [Term] id: SP:0000098 name: mesocarp color xref: PATO:0000014 xref: PO:0007010 xref: PO:0007042 xref: PO:0009087 is_a: SP:0000012 ! fruit color created_by: naama creation_date: 2008-02-12T03:40:00Z [Term] id: SP:0000099 name: endocarp color xref: PATO:0000014 xref: PO:0007010 xref: PO:0007042 xref: PO:0009086 is_a: SP:0000012 ! fruit color created_by: naama creation_date: 2008-02-12T03:40:00Z [Term] id: SP:0000100 name: seed xref: PO:0001170 xref: PO:0009010 is_a: SP:0001000 ! Solanaceae phenotype ontology created_by: naama creation_date: 2008-02-22T10:02:00Z [Term] id: SP:0000101 name: small fruit xref: PATO:0000587 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000462 ! fruit size value [Term] id: SP:0000102 name: large fruit xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000462 ! fruit size value [Term] id: SP:0000103 name: fruit lobedness degree def: "Fruit bumpiness index. The standard deviation of distances (d) from the center of the fruit (assuming all pixels have equal mass) to the perimeter, multiplied by 100." [SGN:EVDK] synonym: "fruit bumpiness" RELATED [] xref: PATO:0000052 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000038 ! fruit shape created_by: naama creation_date: 2008-02-22T10:26:00Z [Term] id: SP:0000104 name: seed weight def: "Average seed weight in grams" [SGN:EVDK] xref: PATO:0000125 xref: PO:0001170 xref: PO:0009010 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000100 ! seed created_by: naama creation_date: 2008-02-22T10:27:00Z [Term] id: SP:0000105 name: seed number per fruit def: "Average number of seeds per fruit." [SGN:EVDK] xref: PATO:0000053 xref: PO:0001170 xref: PO:0009010 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000100 ! seed created_by: naama creation_date: 2008-02-22T10:27:00Z [Term] id: SP:0000106 name: fruit number def: "Number of fruits per plant." [SGM:NM] xref: PO:0007042 xref: PO:0009001 is_a: SP:0000037 ! fruit is_a: SP:0000198 ! yield created_by: naama creation_date: 2008-02-22T10:28:00Z [Term] id: SP:0000107 name: Percent of fruits with less than 10 seeds xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000106 ! fruit number created_by: naama creation_date: 2008-02-22T10:29:00Z [Term] id: SP:0000108 name: leaf xref: PO:0001050 xref: PO:0009025 is_a: SP:0001000 ! Solanaceae phenotype ontology created_by: naama creation_date: 2008-02-22T10:30:00Z [Term] id: SP:0000109 name: leaf number xref: PATO:0000053 xref: PO:0001050 xref: PO:0009025 is_a: SP:0000108 ! leaf created_by: naama creation_date: 2008-02-22T10:30:00Z [Term] id: SP:0000110 name: germination xref: PO:0007057 xref: PO:0009010 is_a: SP:0000001 ! seedling [Term] id: SP:0000111 name: long fruit xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000463 ! fruit shape phenotypic values [Term] id: SP:0000112 name: rounded fruit xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000463 ! fruit shape phenotypic values [Term] id: SP:0000113 name: other fruit morphology xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_obsolete: true [Term] id: SP:0000114 name: number of leaves to 1st inflorescence xref: PATO:0000053 xref: PO:0007047 xref: PO:0009025 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000109 ! leaf number created_by: naama creation_date: 2008-02-22T10:30:00Z [Term] id: SP:0000115 name: flower def: "Flower related traits and phenotypes." [] xref: PO:0007615 xref: PO:0009046 is_a: SP:0001000 ! Solanaceae phenotype ontology created_by: naama creation_date: 2008-02-22T10:47:00Z [Term] id: SP:0000116 name: number of flowers per inflorescence def: "Count of the number of flowers per one inflorescence." [] xref: PATO:0000053 xref: PO:0007615 xref: PO:0009046 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000007 ! inflorescence relationship: variable_of SP:0000117 ! flower number created_by: naama creation_date: 2008-02-22T10:47:00Z [Term] id: SP:0000117 name: flower number synonym: "count" RELATED [] xref: PATO:0000053 xref: PO:0007615 xref: PO:0009046 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000115 ! flower created_by: naama creation_date: 2008-02-22T10:47:00Z [Term] id: SP:0000118 name: fruit glossiness estimation def: "Visual estimation of fruit glossiness 0-3 scale." [SGN:EVDK] xref: PO:0007010 xref: PO:0007042 xref: PO:0009085 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000097 ! epicarp color created_by: naama creation_date: 2008-02-22T10:47:00Z [Term] id: SP:0000119 name: fruit firmness estimation def: "Visual estimation of fruit firmness 0-4 scale." [SGN:EVDK] xref: PATO:0000037 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000013 ! fruit ripening created_by: naama creation_date: 2008-02-22T10:47:00Z [Term] id: SP:0000120 name: seedling lethal xref: PATO:0000718 xref: PO:0000003 xref: PO:0007030 xref: PO:0007131 is_a: SP:0000001 ! seedling [Term] id: SP:0000121 name: yellow fruit xref: PATO:0000324 xref: PO:0007038 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000447 ! fruit color phenotypic values [Term] id: SP:0000122 name: orange fruit xref: PATO:0000953 xref: PO:0007038 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000447 ! fruit color phenotypic values [Term] id: SP:0000123 name: dark red fruit xref: PATO:0001261 xref: PO:0007038 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000447 ! fruit color phenotypic values [Term] id: SP:0000124 name: epicarp texture xref: PO:0007010 xref: PO:0007042 xref: PO:0009085 is_a: SP:0000011 ! fruit morphology [Term] id: SP:0000125 name: green fruit xref: PATO:0000320 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000447 ! fruit color phenotypic values [Term] id: SP:0000126 name: days to first flowering def: "Number of days to opening of third inflorescence after transplanting." [SGN:EVDK] xref: PATO:0000081 xref: PO:0007016 xref: PO:0009046 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000061 ! flowering timing created_by: naama creation_date: 2008-02-22T03:31:00Z [Term] id: SP:0000127 name: radial fruit cracking def: "Estimation of radial fruit cracking 0-5 scale" [SGN:EVDK] xref: PO:0007010 xref: PO:0007042 xref: PO:0009085 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000124 ! epicarp texture created_by: naama creation_date: 2008-02-22T10:47:00Z [Term] id: SP:0000128 name: plant habit index synonym: "growth habit" RELATED [] synonym: "plant habit " RELATED [] is_a: SP:0000003 ! plant habit created_by: naama creation_date: 2008-02-22T10:47:00Z [Term] id: SP:0000129 name: fruits per flowers def: "A measure of how many flowers develop into fruit. Counting." [SGN:EVDK] xref: PATO:0000053 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000106 ! fruit number created_by: naama creation_date: 2008-02-22T03:36:00Z [Term] id: SP:0000130 name: slow germination xref: PATO:0001494 xref: PO:0007030 xref: PO:0007057 xref: PO:0009010 is_a: SP:0000110 ! germination [Term] id: SP:0000131 name: early ripe xref: PATO:0000694 xref: PO:0007010 xref: PO:0009001 is_a: SP:0000365 ! fruit ripening timing [Term] id: SP:0000132 name: late ripe xref: PATO:0000502 xref: PO:0007010 xref: PO:0009001 is_a: SP:0000365 ! fruit ripening timing [Term] id: SP:0000133 name: fruit mid-height width def: "The width measured at half of the fruits height in cm." [SGN:EVDK] xref: PATO:0000921 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000088 ! fruit width created_by: naama creation_date: 2008-03-12T01:08:00Z [Term] id: SP:0000134 name: fruit widest width def: "The maximum width of the fruit in cm." [SGN:EVDK] synonym: "fruit maximum width" RELATED [] xref: PO:0007010 xref: PO:0007042 xref: PO:9001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000088 ! fruit width created_by: naama creation_date: 2008-03-12T01:08:00Z [Term] id: SP:0000135 name: fruit length mid-width def: "The height measured at half of the fruit width in cm." [SGN:EVDK] synonym: "height mid-width" EXACT [] xref: PATO:0000122 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000086 ! fruit length created_by: naama creation_date: 2008-03-12T01:11:00Z [Term] id: SP:0000136 name: fruit longest length def: "The maximum length of the fruit in cm." [SGN:EVDK] synonym: "fruit highest height" EXACT [] synonym: "fruit maximum height" EXACT [] xref: PATO:0000122 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000086 ! fruit length created_by: naama creation_date: 2008-03-12T01:11:00Z [Term] id: SP:0000137 name: proximal fruit end blockiness 5% xref: PO:0007010 xref: PO:0007042 xref: PO:0008002 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000078 ! proximal fruit end blockiness created_by: naama creation_date: 2008-03-12T01:26:00Z [Term] id: SP:0000138 name: proximal fruit end blockiness 10% xref: PO:0007010 xref: PO:0007042 xref: PO:0008002 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000078 ! proximal fruit end blockiness created_by: naama creation_date: 2008-03-12T01:26:00Z [Term] id: SP:0000139 name: proximal fruit end blockiness 20% xref: PO:0007010 xref: PO:0007042 xref: PO:0008002 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000078 ! proximal fruit end blockiness created_by: naama creation_date: 2008-03-12T01:26:00Z [Term] id: SP:0000140 name: proximal fruit end blockiness 30% xref: PO:0007010 xref: PO:0007042 xref: PO:0008002 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000078 ! proximal fruit end blockiness created_by: naama creation_date: 2008-03-12T01:26:00Z [Term] id: SP:0000141 name: partial sterility xref: PO:0007042 xref: PO:0007616 xref: PO:0009046 is_a: SP:0000014 ! sterility [Term] id: SP:0000142 name: full sterility xref: PO:0007042 xref: PO:0007616 xref: PO:0009046 is_a: SP:0000014 ! sterility [Term] id: SP:0000143 name: distal fruit end blockiness 5% xref: PO:0007010 xref: PO:0007042 xref: PO:0008001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000075 ! distal fruit end blockiness created_by: naama creation_date: 2008-03-12T01:26:00Z [Term] id: SP:0000144 name: distal fruit end blockiness 10% xref: PO:0007010 xref: PO:0007042 xref: PO:0008001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000075 ! distal fruit end blockiness created_by: naama creation_date: 2008-03-12T01:26:00Z [Term] id: SP:0000145 name: distal fruit end blockiness 20% xref: PO:0007010 xref: PO:0007042 xref: PO:0008001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000075 ! distal fruit end blockiness created_by: naama creation_date: 2008-03-12T01:26:00Z [Term] id: SP:0000146 name: distal fruit end blockiness 30% xref: PO:0007010 xref: PO:0007042 xref: PO:0008001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000075 ! distal fruit end blockiness created_by: naama creation_date: 2008-03-12T01:26:00Z [Term] id: SP:0000147 name: fruit shape triangle 5% xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000049 ! fruit shape triangle created_by: naama creation_date: 2008-03-12T01:27:00Z [Term] id: SP:0000148 name: fruit shape triangle 10% xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000049 ! fruit shape triangle created_by: naama creation_date: 2008-03-12T01:27:00Z [Term] id: SP:0000149 name: fruit shape triangle 20% xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000049 ! fruit shape triangle created_by: naama creation_date: 2008-03-12T01:27:00Z [Term] id: SP:0000150 name: fruit shape triangle 30% xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000049 ! fruit shape triangle created_by: naama creation_date: 2008-03-12T01:27:00Z [Term] id: SP:0000151 name: necrosis xref: PO:0007130 xref: PO:0007134 xref: PO:0009025 is_a: SP:0000015 ! disease and stress response [Term] id: SP:0000152 name: wilting xref: PO:0000003 xref: PO:0007130 xref: PO:0007134 xref: PO:0009025 is_a: SP:0000015 ! disease and stress response [Term] id: SP:0000153 name: other disease response def: "OBSOLETE. Replaced by parent term SP:0000015 (disease and stress response)." [SGN:nm] xref: PO:0000003 xref: PO:0007130 xref: PO:0007134 is_obsolete: true [Term] id: SP:0000154 name: proximal fruit end height def: "The ratio of the average height of the shoulder points above the proximal end point to maximum height. The height of the shoulder points (H_sl and H_sr) is measured against a line through the proximal point that is perpendicular to the line between the proximal point and the fruit center of weight (assuming all pixels have equal mass)." [SGN:EVDK] synonym: "shoulder height" RELATED [] xref: PATO:0001195 xref: PATO:f0000119 xref: PO:0007010 xref: PO:0007042 xref: PO:0008002 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000072 ! proximal fruit end shape created_by: naama creation_date: 2008-03-17T01:50:00Z [Term] id: SP:0000155 name: distal angle micro 2% is_a: SP:0000500 ! Variables relationship: variable_of SP:0000073 ! distal fruit end angle created_by: naama creation_date: 2008-03-25T11:13:00Z [Term] id: SP:0000156 name: distal angle micro 3% is_a: SP:0000500 ! Variables relationship: variable_of SP:0000073 ! distal fruit end angle created_by: naama creation_date: 2008-03-25T11:13:00Z [Term] id: SP:0000157 name: distal angle micro 5% is_a: SP:0000500 ! Variables relationship: variable_of SP:0000073 ! distal fruit end angle created_by: naama creation_date: 2008-03-25T11:13:00Z [Term] id: SP:0000158 name: distal angle macro 10% is_a: SP:0000500 ! Variables relationship: variable_of SP:0000073 ! distal fruit end angle created_by: naama creation_date: 2008-03-25T11:13:00Z [Term] id: SP:0000159 name: distal angle macro 15% is_a: SP:0000500 ! Variables relationship: variable_of SP:0000073 ! distal fruit end angle created_by: naama creation_date: 2008-03-25T11:13:00Z [Term] id: SP:0000160 name: distal angle macro 20% is_a: SP:0000500 ! Variables relationship: variable_of SP:0000073 ! distal fruit end angle created_by: naama creation_date: 2008-03-25T11:13:00Z [Term] id: SP:0000161 name: horizontal asymmetry obovoid def: "If the area of the fruit is greater below mid-height than above it, horizontal asymmetry obovoid is the average distance (Res_h) between a horizontal line through the fruit at mid-height and the midpoint of the fruit height at each width. Otherwise, it is 0." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000065 ! horizontal asymmetry created_by: naama creation_date: 2008-03-25T11:17:00Z [Term] id: SP:0000162 name: horizontal asymmetry ovoid def: "If the area of the fruit is greater above mid-height than below it, horizontal asymmetry ovoid is the average distance (Res_h) between a horizontal line through the fruit at mid-height and the midpoint of the fruit height at each width. Otherwise, it is 0." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000065 ! horizontal asymmetry created_by: naama creation_date: 2008-03-25T11:17:00Z [Term] id: SP:0000163 name: distal angle macro 25% is_a: SP:0000500 ! Variables relationship: variable_of SP:0000073 ! distal fruit end angle created_by: naama creation_date: 2008-03-25T11:19:00Z [Term] id: SP:0000164 name: eccentricity area index def: "Area ellipse / total fruit area." [SGN:EVDK] synonym: "obovate (ellipse)" RELATED [] synonym: "oel" EXACT [] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000058 ! fruit shape eccentric created_by: naama creation_date: 2008-03-31T10:09:00Z [Term] id: SP:0000165 name: total soluble solids def: "The total soluble solids in the fruit (usually sugars and acids)." [SGN:NM] synonym: "Brix" EXACT [] is_a: SP:0000500 ! Variables relationship: attribute_of SP:0000167 ! fruit metabolites relationship: variable_of SP:0000385 ! sugars [Term] id: SP:0000166 name: citric acid def: "Citric acid content in the fruit." [SGN:NM] is_a: SP:0000019 ! biochemical metabolites is_a: SP:0000167 ! fruit metabolites [Term] id: SP:0000167 name: fruit metabolites def: "The metabolites present in the fruit." [SGN:NM] relationship: part_of SP:0000037 ! fruit [Term] id: SP:0000168 name: malic acid def: "Malic acid content in the fruit." [SGN:NM] is_a: SP:0000019 ! biochemical metabolites is_a: SP:0000167 ! fruit metabolites [Term] id: SP:0000169 name: glutamic acid def: "Glutamic acid content." [SGN:NM] is_a: SP:0000019 ! biochemical metabolites is_a: SP:0000167 ! fruit metabolites [Term] id: SP:0000170 name: pH def: "The pH of the fruit." [SGN:NM] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000167 ! fruit metabolites [Term] id: SP:0000171 name: Total organic acids def: "The total content of organic acids." [SGN:NM] is_a: SP:0000019 ! biochemical metabolites is_a: SP:0000167 ! fruit metabolites [Term] id: SP:0000172 name: total acids def: "The total acid content." [SGN:NM] is_a: SP:0000019 ! biochemical metabolites is_a: SP:0000167 ! fruit metabolites [Term] id: SP:0000173 name: fasciated def: "Fasciated fruit shape. Multipe locules." [SGN:NM] xref: PATO:0000949 is_a: SP:0000463 ! fruit shape phenotypic values [Term] id: SP:0000174 name: determinate def: "Determinate growth of plant branches terminating with an inflorescence." [SGN:NM] is_a: SP:0000469 ! plant habit phenotypic values [Term] id: SP:0000175 name: semi determinate def: "Semi-determinate growth of plant branches producing more inflorescences than determinate plants, but eventually terminating." [SGN:NM] is_a: SP:0000469 ! plant habit phenotypic values [Term] id: SP:0000176 name: indeterminate def: "Ineterminate growth of plant branches. Continual twig elongation and bud formation." [SGN:NM] is_a: SP:0000469 ! plant habit phenotypic values [Term] id: SP:0000177 name: compound leaf xref: PATO:0001504 xref: PO:0001050 xref: PO:0009025 is_a: SP:0000468 ! leaf complexity phenotpic values [Term] id: SP:0000178 name: simple leaf xref: PATO:0001503 xref: PO:0001050 xref: PO:0009025 is_a: SP:0000468 ! leaf complexity phenotpic values [Term] id: SP:0000179 name: distal fruit end def: "The distal end of the fruit (tip)." [SGN:NM] xref: PATO:0001234 is_a: SP:0000069 ! fruit end [Term] id: SP:0000180 name: proximal fruit end def: "The proximal end of the fruit (shoulders)." [SGN:NM] synonym: "shoulders" EXACT [] xref: PATO:0001195 is_a: SP:0000069 ! fruit end [Term] id: SP:0000181 name: distal fruit end color def: "The color of the distal fruit end." [SGN:NM] xref: PATO:0000014 xref: PATO:0001234 is_a: SP:0000012 ! fruit color is_a: SP:0000179 ! distal fruit end [Term] id: SP:0000182 name: proximal fruit end color def: "The color of the proximal fruit end (shoulders)." [SGN:NM] xref: PATO:0000014 xref: PATO:0001195 is_a: SP:0000012 ! fruit color is_a: SP:0000180 ! proximal fruit end [Term] id: SP:0000183 name: leaf veins def: "The leaf vascular tissue." [SGN:NM] xref: PO:0020139 is_a: SP:0000004 ! leaf morphology [Term] id: SP:0000184 name: tuber epidermis def: "Epidermal layer of a tuber." [SGN:NM] synonym: "tuber skin" EXACT [] xref: PO:0025048 "subterranean tuber epidermis" relationship: part_of SP:0000047 ! tuber [Term] id: SP:0000185 name: tuber epidermis color def: "The color of the tuber epidermal layer." [SGN:NM] synonym: "skin color" EXACT [] xref: PATO:0000014 xref: PO:0025048 is_a: SP:0000184 ! tuber epidermis [Term] id: SP:0000186 name: tuber epidermis texture def: "The texture of the tuber epidermal layer." [SGN:NM] synonym: "skin texture" EXACT [] xref: PATO:0000150 xref: PO:0025048 is_a: SP:0000184 ! tuber epidermis [Term] id: SP:0000187 name: tuber flesh def: "The flesh layer of the tuber." [SGN:NM] xref: PO:0025038 "subterranean tuber storage parenchyma" relationship: part_of SP:0000047 ! tuber [Term] id: SP:0000188 name: tuber flesh color def: "The color of the tuber flesh layer." [SGN:NM] xref: PATO:0000014 xref: PO:0025038 relationship: part_of SP:0000187 ! tuber flesh [Term] id: SP:0000189 name: tuber flesh pigment pattern def: "The pattern of pigmentation of the tuber flesh." [SGN:NM] xref: PATO:0000060 xref: PO:0025038 is_a: SP:0000187 ! tuber flesh [Term] id: SP:0000190 name: tuber eye def: "A structure on the tuber surface that can sprout. It also has a significance in determining the processing quality." [SGN:curators] xref: PO:0025042 "A tuber axillary vegetative bud that is part of a subterranean tuber" relationship: part_of SP:0000047 ! tuber [Term] id: SP:0000191 name: tuber eye depth def: "The depth of the tuber eye." [SGN:curators] xref: PATO:0001595 xref: PO:0025042 relationship: part_of SP:0000190 ! tuber eye [Term] id: SP:0000192 name: shoot phenotype def: "Phenotype measured using part of the sporophyte, which is composed of the stems and leaves, and includes shoot apical meristems." [SGN:curators] synonym: "vine phenotype" EXACT [] xref: PO:0009006 is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000193 name: stem def: "The axial system of plants that bears leaves and buds." [APWeb:Glossary] xref: PO:0007089 xref: PO:0009047 relationship: part_of SP:0000192 ! shoot phenotype [Term] id: SP:0000194 name: erect def: "Erect plant growth habit." [PVP:3] synonym: "upright" EXACT [] xref: PATO:0000622 is_a: SP:0000469 ! plant habit phenotypic values [Term] id: SP:0000195 name: semi erect def: "Semi erect plant growth habit." [PVP:5] is_a: SP:0000469 ! plant habit phenotypic values [Term] id: SP:0000196 name: spreading def: "Spreading plant growth habit." [PVP:7] synonym: "horizontal" RELATED [] xref: PATO:0001855 is_a: SP:0000469 ! plant habit phenotypic values [Term] id: SP:0000197 name: post harvest quality def: "After-harvest quality." [SGN:NM] is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000198 name: yield def: "The total yield of the harvest." [SGN:NM] is_a: SP:0000197 ! post harvest quality [Term] id: SP:0000199 name: tuber epidermis pigment pattern def: "The pattern of the tuber pigmentation." [SGN:NM] xref: PATO:0000060 xref: PO:0025048 is_a: SP:0000184 ! tuber epidermis [Term] id: SP:0000200 name: tuber morphology def: "The morphological characteristics of the tuber." [SGN:NM] xref: PO:0004547 relationship: part_of SP:0000047 ! tuber [Term] id: SP:0000201 name: tuber shape def: "The shape of the tuber." [SGN:NM] xref: PATO:0000052 xref: PO:0004547 is_a: SP:0000200 ! tuber morphology [Term] id: SP:0000202 name: tuber size def: "The physical size of the tuber." [SGN:NM] xref: PATO:0000117 xref: PO:0004547 is_a: SP:0000200 ! tuber morphology [Term] id: SP:0000203 name: tuber length xref: PATO:0000122 xref: PO:0004547 is_a: SP:0000202 ! tuber size [Term] id: SP:0000204 name: tuber width xref: PATO:0000921 xref: PO:0004547 is_a: SP:0000202 ! tuber size [Term] id: SP:0000205 name: whole plant phenotype def: "A phenotype of the entire plant, including roots, shoots and leaves, at any stage of its life cycle." [SGN:AP] xref: PO:0000003 is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000206 name: shoot maturity def: "An assessment of the maturity of the shoot (vine)." [SGN:curators] synonym: "potato vine maturity (Potato Cooperators: There is considerable diversity among varieties with respect to how long they grow until they naturally senesce. 95 and 120DAP were chosen so we could evaluate differences among early-maturing varieties (95DAP) and among later maturing varieties (120DAP) )." RELATED [Potato_Cooperators:WSD] synonym: "vine maturity" EXACT [] xref: PATO:0000261 xref: PO:0007112 xref: PO:0009006 is_a: SP:0000192 ! shoot phenotype is_a: SP:0000205 ! whole plant phenotype [Term] id: SP:0000207 name: early shoot maturity def: "An assesment of the shoot at an early stage of maturity." [SGN:curators] synonym: "Potato: 95 days after pollination (95DAP)" RELATED [POtato_Cooperators:WSD] is_obsolete: true [Term] id: SP:0000208 name: mid shoot maturity def: "An assesment of the shoot at a mid stage of maturity." [SGN:curators] is_obsolete: true [Term] id: SP:0000209 name: late shoot maturity def: "An assesment of the shoot at a late stage of maturity." [SGN:curators] synonym: "Potato: 120 days after pollination (120DAP)" RELATED [Potato_Cooperators:WSD] is_obsolete: true [Term] id: SP:0000210 name: shoot maturity 120 DAP def: "Assessment of the shoot maturity 120 days after pollination (DAP)." [potato_cooperators:WDJ] synonym: "potato vine maturity 120 DAP" RELATED [] xref: PATO:0000261 xref: PO:0007112 xref: PO:0009006 is_a: SP:0000206 ! shoot maturity created_by: naamamenda creation_date: 2010-05-14T03:02:56Z [Term] id: SP:0000211 name: shoot maturity 95DAP def: "Assessment of the shoot maturity 95 days after pollination (DAP)." [potato_cooperators:WDJ] synonym: "potato vine maturity 95 DAP" RELATED [] xref: PATO:0000261 xref: PO:0007112 xref: PO:0009006 is_a: SP:0000206 ! shoot maturity created_by: naamamenda creation_date: 2010-05-14T02:59:49Z [Term] id: SP:0000212 name: tuber appearance def: "The overall appearance of the tuber. A 1-9 scale is used, with 1 the lowest score (\"very poor\") and 9 the highest (excellent)." [NE:1014] xref: PO:0004547 is_a: SP:0000200 ! tuber morphology created_by: naamamenda creation_date: 2010-05-14T02:53:14Z [Term] id: SP:0000213 name: tuber height xref: PATO:0000119 xref: PO:0004547 is_a: SP:0000202 ! tuber size created_by: naamamenda creation_date: 2010-05-14T02:51:40Z [Term] id: SP:0000214 name: sucrose def: "Sucrose content in mg/g fresh weight." [SGN:NM] is_a: SP:0000385 ! sugars created_by: Naama creation_date: 2010-05-14T03:59:01Z [Term] id: SP:0000215 name: glucose def: "Glucose content in mg/g fresh weight." [SGN:NM] is_a: SP:0000385 ! sugars created_by: Naama creation_date: 2010-05-14T04:02:11Z [Term] id: SP:0000216 name: tuber mass def: "The mass of the tuber." [SGN:NM] synonym: "tuber weight" RELATED [] xref: PATO:0000125 xref: PO:0004547 relationship: part_of SP:0000047 ! tuber created_by: Naama creation_date: 2010-05-18T11:03:02Z [Term] id: SP:0000217 name: specific gravity def: "Weight in air / (weight in air -weight in water)." [potato_cooperators:WDJ] xref: PO:0004547 relationship: part_of SP:0000080 ! fruit mass, weight in grams relationship: part_of SP:0000216 ! tuber mass created_by: Naama creation_date: 2010-05-18T11:49:44Z [Term] id: SP:0000218 name: specific gravity at harvest def: "Weight in air / (weight in air -weight in water) measured at the time of harvest." [potato_cooperators:WDJ] xref: PO:0004547 is_a: SP:0000217 ! specific gravity created_by: Naama creation_date: 2010-05-18T11:54:44Z [Term] id: SP:0000219 name: specific gravity at storage def: "Weight in air / (weight in air -weight in water) measured at storage." [potato_cooperators:WDJ] xref: PO:0004547 is_a: SP:0000197 ! post harvest quality is_a: SP:0000217 ! specific gravity created_by: Naama creation_date: 2010-05-18T11:54:44Z [Term] id: SP:0000220 name: heat sprout rating def: "A scale to measure the propensity of tubers to sprout in the soil under high temperatures." [potato_cooperators:DSD] is_a: SP:0000197 ! post harvest quality created_by: Naama creation_date: 2010-05-18T12:37:10Z [Term] id: SP:0000221 name: processing quality def: "Quality of processed plant product, typically used by the food industry." [SGN:NM] is_a: SP:0001000 ! Solanaceae phenotype ontology created_by: Naama creation_date: 2010-05-18T12:44:57Z [Term] id: SP:0000222 name: chip color def: "The color of a fried chip." [SGN:NM] xref: PATO:0000014 xref: PO:0025038 is_a: SP:0000221 ! processing quality relationship: part_of SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-18T12:46:26Z [Term] id: SP:0000223 name: Qualitative color def: "An estimate for the chip color. Scale is 1-5 with 1 being a light colored chip." [potato_cooperators:DSD] xref: PATO:0000014 xref: PO:0025038 is_a: SP:0000222 ! chip color created_by: Naama creation_date: 2010-05-18T12:47:53Z [Term] id: SP:0000224 name: Quantitative color def: "A measurement of the chip color with a colorimeter at a specific wavelength." [potato_cooperators:DSD] xref: PATO:0000014 xref: PO:0025038 is_a: SP:0000222 ! chip color created_by: Naama creation_date: 2010-05-18T12:47:53Z [Term] id: SP:0000225 name: tuber cross section xref: PO:0004547 is_a: SP:0000200 ! tuber morphology created_by: Naama creation_date: 2010-05-19T11:59:39Z [Term] id: SP:0000226 name: tuber epidermis set depth synonym: "tuber skin set depth " RELATED [] xref: PATO:0001595 xref: PO:0025048 is_a: SP:0000184 ! tuber epidermis created_by: Naama creation_date: 2010-05-19T12:04:16Z [Term] id: SP:0000227 name: tuber epidermis texture russet xref: PO:0025048 is_a: SP:0000186 ! tuber epidermis texture created_by: Naama creation_date: 2010-05-24T02:24:59Z [Term] id: SP:0000228 name: yellow flower color xref: PATO:0000324 xref: PO:0007600 xref: PO:0009046 is_a: SP:0000476 ! flower color phenotypic values created_by: Naama creation_date: 2010-05-20T02:33:53Z [Term] id: SP:0000229 name: leaf length def: "leaf length from the apex to the basal zone in cm." [SGN:EVDK] synonym: "TO:0000370" RELATED [] xref: PATO:0000122 xref: PO:0001052 xref: PO:0009025 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000042 ! leaf size created_by: Naama creation_date: 2010-05-22T01:59:28Z [Term] id: SP:0000230 name: compound inflorescence xref: PATO:0001504 xref: PO:0001083 xref: PO:0009049 is_a: SP:0000473 ! inflorescence structure - phenotypic values created_by: Naama creation_date: 2010-05-22T02:08:21Z [Term] id: SP:0000231 name: shoot maturity very early def: "Vine 100% dead" [potato_cooperators:1] is_a: SP:0000210 ! shoot maturity 120 DAP is_a: SP:0000211 ! shoot maturity 95DAP created_by: Naama creation_date: 2010-05-25T01:30:26Z [Term] id: SP:0000232 name: shoot maturity early def: "Vine starting to senesce (yellowing evident)." [potato_cooperators:4] is_a: SP:0000210 ! shoot maturity 120 DAP is_a: SP:0000211 ! shoot maturity 95DAP created_by: Naama creation_date: 2010-05-25T01:29:01Z [Term] id: SP:0000233 name: tuber thickness xref: PATO:0000915 xref: PO:0004547 xref: PVP:5 is_a: SP:0000202 ! tuber size created_by: Naama creation_date: 2010-05-19T01:14:50Z [Term] id: SP:0000234 name: simple inflorescence xref: PATO:0001503 xref: PO:0001083 xref: PO:0009049 is_a: SP:0000473 ! inflorescence structure - phenotypic values created_by: Naama creation_date: 2010-05-22T02:08:21Z [Term] id: SP:0000235 name: decumbent is_a: SP:0000469 ! plant habit phenotypic values created_by: Naama creation_date: 2010-05-24T12:11:36Z [Term] id: SP:0000236 name: plant canopy is_a: SP:0000003 ! plant habit created_by: Naama creation_date: 2010-05-24T12:13:17Z [Term] id: SP:0000237 name: poor canopy is_a: SP:0000236 ! plant canopy created_by: Naama creation_date: 2010-05-24T12:13:59Z [Term] id: SP:0000238 name: fair canopy is_a: SP:0000236 ! plant canopy created_by: Naama creation_date: 2010-05-24T12:13:59Z [Term] id: SP:0000239 name: good canopy is_a: SP:0000236 ! plant canopy created_by: Naama creation_date: 2010-05-24T12:13:59Z [Term] id: SP:0000240 name: tuber epidermis texture netted def: "Netted skin texture." [NE1014:5] xref: PATO:0001947 xref: PO:0025048 is_a: SP:0000186 ! tuber epidermis texture created_by: Naama creation_date: 2010-05-24T02:24:59Z [Term] id: SP:0000241 name: tuber epidermis texture smooth def: "Smooth skin texture." [NE1014:8] xref: PATO:0000701 xref: PO:0025048 is_a: SP:0000186 ! tuber epidermis texture created_by: Naama creation_date: 2010-05-24T02:24:59Z [Term] id: SP:0000242 name: tuber epidermis texture slight net def: "Slight net skin texture." [NE1014:6] xref: PATO:0001947 xref: PO:0025048 is_a: SP:0000240 ! tuber epidermis texture netted created_by: Naama creation_date: 2010-05-24T02:25:04Z [Term] id: SP:0000243 name: partial russet def: "Partial russet skin texture." [NE1014:1] xref: PO:0025048 is_a: SP:0000227 ! tuber epidermis texture russet created_by: Naama creation_date: 2010-05-24T02:27:57Z [Term] id: SP:0000244 name: heavy russet def: "Heavy russet skin texture." [NE1014:2] xref: PO:0025048 is_a: SP:0000227 ! tuber epidermis texture russet created_by: Naama creation_date: 2010-05-24T02:27:57Z [Term] id: SP:0000245 name: moderate russet def: "Moderate russet skin texture." [NE1014:3] xref: PO:0025048 is_a: SP:0000227 ! tuber epidermis texture russet created_by: Naama creation_date: 2010-05-24T02:27:57Z [Term] id: SP:0000246 name: light russet def: "Light russet skin texture." [NE1014:4] xref: PO:0025048 is_a: SP:0000227 ! tuber epidermis texture russet created_by: Naama creation_date: 2010-05-24T02:27:57Z [Term] id: SP:0000247 name: tuber epidermis texture moderately smooth def: "Moderately smooth skin texture." [NE1014:7] xref: PATO:0000701 xref: PO:0025048 is_a: SP:0000241 ! tuber epidermis texture smooth created_by: Naama creation_date: 2010-05-24T02:46:16Z [Term] id: SP:0000248 name: tuber epidermis texture very smooth def: "Very smooth skin texture." [NE1014:9] xref: PATO:0000701 xref: PO:0025048 is_a: SP:0000241 ! tuber epidermis texture smooth created_by: Naama creation_date: 2010-05-24T02:46:16Z [Term] id: SP:0000249 name: tuber cross section vary flat xref: NE1014:1 xref: PO:0004547 is_a: SP:0000225 ! tuber cross section created_by: Naama creation_date: 2010-05-24T03:10:05Z [Term] id: SP:0000250 name: tuber cross section flat xref: NE1014:3 xref: PO:0004547 is_a: SP:0000225 ! tuber cross section created_by: Naama creation_date: 2010-05-24T03:10:05Z [Term] id: SP:0000251 name: tuber cross section intermediate/oval xref: NE1014:5 xref: PO:0004547 is_a: SP:0000225 ! tuber cross section created_by: Naama creation_date: 2010-05-24T03:10:05Z [Term] id: SP:0000252 name: tuber cross section mostly round xref: NE1014:7 xref: PO:0004547 is_a: SP:0000225 ! tuber cross section created_by: Naama creation_date: 2010-05-24T03:10:05Z [Term] id: SP:0000253 name: tuber cross section round xref: NE1014:8 xref: PO:0004547 is_a: SP:0000225 ! tuber cross section created_by: Naama creation_date: 2010-05-24T03:10:05Z [Term] id: SP:0000254 name: tuber cross section very round xref: NE1014:9 xref: PO:0004547 is_a: SP:0000225 ! tuber cross section created_by: Naama creation_date: 2010-05-24T03:10:05Z [Term] id: SP:0000255 name: skin set depth very poor xref: NE1014:1 xref: PO:0025048 is_a: SP:0000226 ! tuber epidermis set depth created_by: Naama creation_date: 2010-05-24T03:14:57Z [Term] id: SP:0000256 name: skin set depth poor xref: NE1014:3 xref: PO:0025048 is_a: SP:0000226 ! tuber epidermis set depth created_by: Naama creation_date: 2010-05-24T03:14:57Z [Term] id: SP:0000257 name: skin set depth fair xref: NE1014:5 xref: PO:0025048 is_a: SP:0000226 ! tuber epidermis set depth created_by: Naama creation_date: 2010-05-24T03:14:57Z [Term] id: SP:0000258 name: skin set depth good xref: NE1014:7 xref: PO:0025048 is_a: SP:0000226 ! tuber epidermis set depth created_by: Naama creation_date: 2010-05-24T03:14:57Z [Term] id: SP:0000259 name: skin set depth excellent xref: NE1014:9 xref: PO:0025048 is_a: SP:0000226 ! tuber epidermis set depth created_by: Naama creation_date: 2010-05-24T03:14:57Z [Term] id: SP:0000260 name: tuber size small def: "Small tuber size." [NE1014:1] xref: PATO:0000587 xref: PO:0004547 is_a: SP:0000322 ! tuber size index created_by: Naama creation_date: 2010-05-25T12:38:06Z [Term] id: SP:0000261 name: tuber size small-medium def: "Small-medium tuber size." [NE1014:3] xref: PATO:0000587 xref: PO:0004547 is_a: SP:0000322 ! tuber size index created_by: Naama creation_date: 2010-05-25T12:38:06Z [Term] id: SP:0000262 name: tuber size medium def: "Medium tuber size." [NE1014:5] xref: PO:0004547 is_a: SP:0000322 ! tuber size index created_by: Naama creation_date: 2010-05-25T12:38:06Z [Term] id: SP:0000263 name: tuber size medium-large def: "Medium-large tuber size." [NE1014:7] xref: PATO:0000586 xref: PO:0004547 is_a: SP:0000322 ! tuber size index created_by: Naama creation_date: 2010-05-25T12:38:06Z [Term] id: SP:0000264 name: tuber size large def: "Large tuber size." [NE1014:9] xref: PATO:0000586 xref: PO:0004547 is_a: SP:0000322 ! tuber size index created_by: Naama creation_date: 2010-05-25T12:38:06Z [Term] id: SP:0000265 name: tuber appearance very poor def: "Very poor tuber appearance." [NE1014:1] xref: PO:0004547 is_a: SP:0000212 ! tuber appearance created_by: Naama creation_date: 2010-05-25T01:09:49Z [Term] id: SP:0000266 name: tuber appearance poor def: "Poor tuber appearance." [NE1014:3] xref: PO:0004547 is_a: SP:0000212 ! tuber appearance created_by: Naama creation_date: 2010-05-25T01:10:08Z [Term] id: SP:0000267 name: tuber appearance fair def: "Fair tuber appearance." [NE1014:5] xref: PO:0004547 is_a: SP:0000212 ! tuber appearance created_by: Naama creation_date: 2010-05-25T01:10:27Z [Term] id: SP:0000268 name: tuber appearance good def: "Good tuber appearance." [NE1014:7] xref: PO:0004547 is_a: SP:0000212 ! tuber appearance created_by: Naama creation_date: 2010-05-25T01:10:43Z [Term] id: SP:0000269 name: tuber appearance excellent xref: NE1014:9 xref: PO:0004547 is_a: SP:0000212 ! tuber appearance created_by: Naama creation_date: 2010-05-25T01:10:59Z [Term] id: SP:0000270 name: shoot maturity mid-season def: "Green vine, done flowering." [potato_cooperators:6] is_a: SP:0000210 ! shoot maturity 120 DAP is_a: SP:0000211 ! shoot maturity 95DAP created_by: Naama creation_date: 2010-05-25T01:31:19Z [Term] id: SP:0000271 name: shoot maturity late def: "Green Vine; Some flowers yet in bloom." [potato_cooperators:7] is_a: SP:0000210 ! shoot maturity 120 DAP is_a: SP:0000211 ! shoot maturity 95DAP created_by: Naama creation_date: 2010-05-25T01:31:45Z [Term] id: SP:0000272 name: shoot maturity very late def: "Full bloom with buds evident as well." [potato_cooperators:9] is_a: SP:0000210 ! shoot maturity 120 DAP is_a: SP:0000211 ! shoot maturity 95DAP created_by: Naama creation_date: 2010-05-25T01:32:07Z [Term] id: SP:0000273 name: tuber skin color white xref: PATO:0000323 xref: PO:0025048 xref: PVP:1 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T01:45:53Z [Term] id: SP:0000274 name: tuber skin color light yellow xref: PATO:0001264 xref: PO:0025048 xref: PVP:3 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T01:46:14Z [Term] id: SP:0000275 name: tuber skin color yellow xref: PATO:0000324 xref: PO:0025048 xref: PVP:3 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T01:47:11Z [Term] id: SP:0000276 name: tuber skin color pale yellow synonym: "buff" RELATED [] xref: PATO:0001286 xref: PO:0025048 xref: PVP:4 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T03:06:13Z [Term] id: SP:0000277 name: tuber skin color pale brown synonym: "tan" RELATED [] xref: PATO:0001268 xref: PO:0025048 xref: PVP:5 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T03:07:50Z [Term] id: SP:0000278 name: tuber skin color brown xref: PATO:0000952 xref: PO:0025048 xref: PVP:6 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T03:09:11Z [Term] id: SP:0000279 name: tuber skin color pink xref: PATO:0000954 xref: PO:0025048 xref: PVP:7 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T03:09:57Z [Term] id: SP:0000280 name: tuber skin color red xref: PATO:0000322 xref: PO:0025048 xref: PVP:8 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T03:10:27Z [Term] id: SP:0000281 name: tuber skin color maroon synonym: "purplish red " RELATED [] xref: PATO:0001426 xref: PO:0025048 xref: PVP:9 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T03:10:54Z [Term] id: SP:0000282 name: tuber skin color purple xref: PATO:0000951 xref: PO:0025048 xref: PVP:10 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T03:13:00Z [Term] id: SP:0000283 name: tuber skin color dark purple xref: PATO:0001259 xref: PO:0025048 xref: PVP:11 is_a: SP:0000185 ! tuber epidermis color created_by: Naama creation_date: 2010-05-25T03:14:06Z [Term] id: SP:0000284 name: tuber thickness round xref: PO:0004547 xref: PVP:1 is_a: SP:0000233 ! tuber thickness created_by: Naama creation_date: 2010-05-25T03:17:39Z [Term] id: SP:0000285 name: tuber thickness medium xref: PO:0004547 xref: PVP:2 is_a: SP:0000233 ! tuber thickness created_by: Naama creation_date: 2010-05-25T03:19:04Z [Term] id: SP:0000286 name: tuber thickness slightly flattened xref: PO:0004547 xref: PVP:3 is_a: SP:0000233 ! tuber thickness created_by: Naama creation_date: 2010-05-25T03:19:19Z [Term] id: SP:0000287 name: tuber thickness flattened xref: PO:0004547 xref: PVP:4 is_a: SP:0000233 ! tuber thickness created_by: Naama creation_date: 2010-05-25T03:19:41Z [Term] id: SP:0000288 name: tuber flesh color brown xref: PATO:0000952 xref: PO:0025038 xref: PVP:6 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T03:22:15Z [Term] id: SP:0000289 name: tuber flesh color light yellow xref: PATO:0001264 xref: PO:0025038 xref: PVP:2 xref: solcap:7 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T11:01:55Z [Term] id: SP:0000290 name: tuber flesh color maroon synonym: "purplish red " RELATED [] xref: PATO:0001426 xref: PO:0025038 xref: PVP:9 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T11:02:30Z [Term] id: SP:0000291 name: tuber flesh color pale brown synonym: "tan" RELATED [] xref: PATO:0001268 xref: PO:0025038 xref: PVP:5 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T11:03:05Z [Term] id: SP:0000292 name: tuber flesh color dark purple xref: PATO:0001259 xref: PO:0025038 xref: PVP:11 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T11:03:46Z [Term] id: SP:0000293 name: tuber flesh color purple xref: PATO:0000951 xref: PO:0025038 xref: PVP:10 xref: solcap:2 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T11:05:33Z [Term] id: SP:0000294 name: tuber flesh color pale yellow synonym: "buff" RELATED [] xref: PATO:0001286 xref: PO:0025038 xref: PVP:4 xref: solcap:8 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T11:06:29Z [Term] id: SP:0000295 name: tuber flesh color pink xref: PATO:0000954 xref: PO:0025038 xref: PVP:7 xref: solcap:4 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T11:07:00Z [Term] id: SP:0000296 name: tuber flesh color red xref: PATO:0000322 xref: PO:0025038 xref: PVP:8 xref: solcap:3 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T11:07:47Z [Term] id: SP:0000297 name: tuber flesh color white xref: PATO:0000323 xref: PO:0025038 xref: PVP:1 xref: solcap:9 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T11:08:41Z [Term] id: SP:0000298 name: tuber flesh color yellow xref: PATO:0000324 xref: PO:0025038 xref: PVP:3 xref: solcap:6 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2010-05-25T11:09:32Z [Term] id: SP:0000299 name: tuber eye depth protruding def: "Protruding tuber eyes." [PVP:1] xref: PATO:0001598 xref: PO:0025042 is_a: SP:0000191 ! tuber eye depth created_by: Naama creation_date: 2010-05-25T11:44:29Z [Term] id: SP:0000300 name: tuber eye depth shallow def: "Shallow tuber eyes." [PVP:3] xref: PATO:0001692 xref: PO:0025042 is_a: SP:0000191 ! tuber eye depth created_by: Naama creation_date: 2010-05-26T10:36:18Z [Term] id: SP:0000301 name: tuber eye depth intermediate def: "Intermediate tuber eye depth." [PVP:5] xref: PATO:0001596 xref: PO:0025042 is_a: SP:0000191 ! tuber eye depth created_by: Naama creation_date: 2010-05-26T10:37:14Z [Term] id: SP:0000302 name: tuber eye depth deep def: "Deep tuber eyes." [PVP:7] xref: PATO:0001666 xref: PO:0025042 is_a: SP:0000191 ! tuber eye depth created_by: Naama creation_date: 2010-05-26T10:38:50Z [Term] id: SP:0000303 name: tuber eye depth very deep def: "Very deep tuber eyes." [PVP:9] xref: PATO:0001666 xref: PO:0025042 is_a: SP:0000191 ! tuber eye depth created_by: Naama creation_date: 2010-05-26T10:39:15Z [Term] id: SP:0000304 name: heat sprout rating swollen eyes xref: potato_cooperators:2 is_a: SP:0000220 ! heat sprout rating created_by: Naama creation_date: 2010-05-26T10:52:46Z [Term] id: SP:0000305 name: heat sprout rating sprouts caliber 1/4 inch xref: potato_cooperators:3 is_a: SP:0000220 ! heat sprout rating created_by: Naama creation_date: 2010-05-26T10:53:40Z [Term] id: SP:0000306 name: heat sprout rating sprouts caliber 1/2 inch xref: potato_cooperators:4 is_a: SP:0000220 ! heat sprout rating created_by: Naama creation_date: 2010-05-26T10:54:11Z [Term] id: SP:0000307 name: heat sprout rating sprouts caliber 1 inch xref: potato_cooperators:5 is_a: SP:0000220 ! heat sprout rating created_by: Naama creation_date: 2010-05-26T10:54:25Z [Term] id: SP:0000308 name: heat sprout rating sprouts caliber 2 inches xref: potato_cooperators:6 is_a: SP:0000220 ! heat sprout rating created_by: Naama creation_date: 2010-05-26T10:54:42Z [Term] id: SP:0000309 name: heat sprout rating sprouts caliber 3 inches xref: potato_cooperators:7 is_a: SP:0000220 ! heat sprout rating created_by: Naama creation_date: 2010-05-26T10:55:00Z [Term] id: SP:0000310 name: heat sprout rating chain tubers xref: potato_cooperators:9 is_a: SP:0000220 ! heat sprout rating created_by: Naama creation_date: 2010-05-26T10:55:25Z [Term] id: SP:0000311 name: tuber epidermis pigment pattern eyes def: "Tuber skin pigment pattern has eyes. See potato cooperators guide Figure 13." [potato_cooperators:fig13] xref: PO:0025048 xref: potato_cooperators:1 is_a: SP:0000199 ! tuber epidermis pigment pattern created_by: Naama creation_date: 2010-05-26T10:57:25Z [Term] id: SP:0000312 name: tuber epidermis pigment pattern eyebrows def: "Tuber skin pigment pattern has eyebrows. See potato cooperators guide Figure 13." [potato_cooperators:fig13] xref: PO:0025048 xref: potato_cooperators:2 is_a: SP:0000199 ! tuber epidermis pigment pattern created_by: Naama creation_date: 2010-05-26T10:59:31Z [Term] id: SP:0000313 name: tuber epidermis pigment pattern splashed def: "Tuber skin pigment pattern is splashed. See potato cooperators guide Figure 13." [potato_cooperators:fig13] xref: PO:0025048 xref: potato_cooperators:3 is_a: SP:0000199 ! tuber epidermis pigment pattern created_by: Naama creation_date: 2010-05-26T11:06:50Z [Term] id: SP:0000314 name: tuber epidermis pigment pattern scattered def: "Tuber skin pigment pattern is scattered See potato cooperators guide Figure 13." [potato_cooperators:fig13] xref: PO:0025048 xref: potato_cooperators:4 is_a: SP:0000199 ! tuber epidermis pigment pattern created_by: Naama creation_date: 2010-05-26T11:08:01Z [Term] id: SP:0000315 name: tuber epidermis pigment pattern spectacled def: "Tuber skin pigment pattern is scattered See potato cooperators guide Figure 13." [potato_cooperators:fig13] xref: PO:0025048 xref: potato_cooperators:5 is_a: SP:0000199 ! tuber epidermis pigment pattern created_by: Naama creation_date: 2010-05-26T11:08:25Z [Term] id: SP:0000316 name: tuber epidermis pigment pattern stippled def: "Tuber skin pigment pattern is stippled See potato cooperators guide Figure 13." [potato_cooperators:fig13] xref: PO:0025048 xref: potato_cooperators:6 is_a: SP:0000199 ! tuber epidermis pigment pattern created_by: Naama creation_date: 2010-05-26T11:10:42Z [Term] id: SP:0000317 name: tuber shape compressed def: "Compressed shape. See potato cooperators guide, Figure 14." [potato_cooperators:fig14] xref: PATO:0001840 xref: PO:0004547 xref: potato_cooperators:1 is_a: SP:0000201 ! tuber shape created_by: Naama creation_date: 2010-05-26T12:18:26Z [Term] id: SP:0000318 name: tuber shape round def: "Round shape. See potato cooperators guide, Figure 14." [potato_cooperators:fig14] xref: PATO:0000411 xref: PO:0004547 xref: potato_cooperators:2 is_a: SP:0000201 ! tuber shape created_by: Naama creation_date: 2010-05-26T12:23:21Z [Term] id: SP:0000319 name: tuber shape oval def: "Oval shape. See potato cooperators guide, Figure 14." [potato_cooperators:fig14] synonym: "ovate" RELATED [] xref: PATO:0001891 xref: PO:0004547 xref: potato_cooperators:3 is_a: SP:0000201 ! tuber shape created_by: Naama creation_date: 2010-05-26T12:25:26Z [Term] id: SP:0000320 name: tuber shape long def: "Long tuber shape. See potato cooperators guide, Figure 14." [potato_cooperators:fig14] xref: PO:0004547 xref: potato_cooperators:5 is_a: SP:0000201 ! tuber shape created_by: Naama creation_date: 2010-05-26T12:26:01Z [Term] id: SP:0000321 name: tuber shape oblong def: "Elongated tuber shape. See potato cooperators guide, Figure 14." [potato_cooperators:fig14] xref: PATO:0000946 xref: PO:0004547 xref: potato_cooperators:4 is_a: SP:0000201 ! tuber shape created_by: Naama creation_date: 2010-05-26T12:26:59Z [Term] id: SP:0000322 name: tuber size index xref: PO:0004547 is_a: SP:0000202 ! tuber size created_by: Naama creation_date: 2010-05-26T03:32:52Z [Term] id: SP:0000323 name: heat sprout rating none xref: potato_cooperators:1 is_a: SP:0000220 ! heat sprout rating created_by: Naama creation_date: 2010-05-28T02:26:47Z [Term] id: SP:0000324 name: heat sprout rating new top growth xref: potato_cooperators:8 is_a: SP:0000220 ! heat sprout rating created_by: Naama creation_date: 2010-05-28T02:30:09Z [Term] id: SP:0000325 name: shoot maturity very early 2 def: "Between very early and early." [potato_cooperators:2] is_a: SP:0000211 ! shoot maturity 95DAP is_a: SP:0000231 ! shoot maturity very early created_by: Naama creation_date: 2010-06-02T01:34:00Z [Term] id: SP:0000326 name: shoot maturity very early 3 def: "Between very early and early." [potato_cooperators:3] is_a: SP:0000211 ! shoot maturity 95DAP is_a: SP:0000231 ! shoot maturity very early created_by: Naama creation_date: 2010-06-02T01:35:11Z [Term] id: SP:0000327 name: shoot maturity mid-season 5 def: "Between early and mid-season." [potato_cooperators:5] is_a: SP:0000211 ! shoot maturity 95DAP is_a: SP:0000270 ! shoot maturity mid-season created_by: Naama creation_date: 2010-06-02T01:41:17Z [Term] id: SP:0000328 name: shoot maturity late 8 def: "Between late and very late." [potato_cooperators:8] is_a: SP:0000211 ! shoot maturity 95DAP is_a: SP:0000271 ! shoot maturity late created_by: Naama creation_date: 2010-06-02T01:41:57Z [Term] id: SP:0000329 name: erect 1 def: "Erect plant growth habit. close to 90 degrees." [PVP:1] synonym: "upright" EXACT [] xref: PATO:0000622 is_a: SP:0000194 ! erect created_by: Naama creation_date: 2010-06-02T01:44:31Z [Term] id: SP:0000330 name: erect 2 def: "Erect plant growth habit. Between 90-45 degrees" [PVP:2] synonym: "upright" EXACT [] xref: PATO:0000622 is_a: SP:0000194 ! erect created_by: Naama creation_date: 2010-06-02T01:45:17Z [Term] id: SP:0000331 name: semi-erect 4 def: "Semi-erect plant growth habit. 45 degrees." [PVP:4] synonym: "upright" EXACT [] xref: PATO:0000622 is_a: SP:0000195 ! semi erect created_by: Naama creation_date: 2010-06-02T01:47:35Z [Term] id: SP:0000332 name: spreading 6 def: "Spreading plant growth habit. Less than 30 degrees" [PVP:6] synonym: "upright" EXACT [] xref: PATO:0001855 is_a: SP:0000196 ! spreading created_by: Naama creation_date: 2010-06-02T01:49:13Z [Term] id: SP:0000333 name: spreading 8 def: "Spreading plant growth habit. Less than 15 degrees" [PVP:8] synonym: "upright" EXACT [] xref: PATO:0001855 is_a: SP:0000196 ! spreading created_by: Naama creation_date: 2010-06-02T01:51:05Z [Term] id: SP:0000334 name: spreading 9 def: "Spreading plant growth habit. Zero degrees." [PVP:9] synonym: "upright" EXACT [] xref: PATO:0001855 is_a: SP:0000196 ! spreading created_by: Naama creation_date: 2010-06-02T01:51:45Z [Term] id: SP:0000335 name: tuber size small 2 def: "Small to small-medium tuber size." [NE1014:2] xref: PATO:0000587 xref: PO:0004547 is_a: SP:0000260 ! tuber size small created_by: Naama creation_date: 2010-06-02T11:13:04Z [Term] id: SP:0000336 name: tuber size small 4 def: "Small-medium to medium tuber size." [NE1014:4] xref: PATO:0000587 xref: PO:0004547 is_a: SP:0000261 ! tuber size small-medium created_by: Naama creation_date: 2010-06-02T11:13:58Z [Term] id: SP:0000337 name: tuber size medium 6 def: "Medium to medium-large tuber size." [NE1014:6] xref: PO:0004547 is_a: SP:0000262 ! tuber size medium created_by: Naama creation_date: 2010-06-02T11:14:57Z [Term] id: SP:0000338 name: tuber size medium-large 8 def: "Medium-large to large tuber size." [NE1014:8] xref: PATO:0000586 xref: PO:0004547 is_a: SP:0000263 ! tuber size medium-large created_by: Naama creation_date: 2010-06-02T11:16:02Z [Term] id: SP:0000339 name: tuber appearance very poor 2 def: "Very poor to poor tuber appearance." [NE1014:2] xref: PO:0004547 is_a: SP:0000265 ! tuber appearance very poor created_by: Naama creation_date: 2010-06-04T02:39:11Z [Term] id: SP:0000340 name: tuber appearance good 8 def: "Good to excellent tuber appearance." [NE1014:8] xref: PO:0004547 is_a: SP:0000268 ! tuber appearance good created_by: Naama creation_date: 2010-06-04T02:40:33Z [Term] id: SP:0000341 name: tuber appearance poor 4 def: "Poor to fair tuber appearance." [NE1014:4] xref: PO:0004547 is_a: SP:0000266 ! tuber appearance poor created_by: Naama creation_date: 2010-06-04T02:40:54Z [Term] id: SP:0000342 name: tuber appearance fair 6 def: "Fair to good tuber appearance." [NE1014:6] xref: PO:0004547 is_a: SP:0000267 ! tuber appearance fair created_by: Naama creation_date: 2010-06-04T02:42:42Z [Term] id: SP:0000343 name: hypocotyl xref: PO:0007043 relationship: part_of SP:0000001 ! seedling created_by: Naama creation_date: 2010-07-15T03:19:16Z [Term] id: SP:0000344 name: hypocotyl anthocyanin content is_a: SP:0000016 ! anthocyanin content relationship: part_of SP:0000343 ! hypocotyl created_by: Naama creation_date: 2010-07-15T03:25:42Z [Term] id: SP:0000345 name: titratable acids def: "Grams of citric acid per 100ml. Method for measuring is NaOH titration." [SolCAP:DF] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000166 ! citric acid created_by: Naama creation_date: 2010-07-15T03:39:19Z [Term] id: SP:0000346 name: fruit color uniformity external def: "The proportion of the 2D area of the red color epicarp out of the total epicarp area visible from a top view of the proximal fruit end." [SGN:EVDK] synonym: "epicarp color uniformity" EXACT [SGN:NM] is_a: SP:0000094 ! fruit color uniformity is_a: SP:0000097 ! epicarp color created_by: Naama creation_date: 2010-07-15T03:45:08Z [Term] id: SP:0000347 name: fruit color uniformity internal is_a: SP:0000094 ! fruit color uniformity is_a: SP:0000099 ! endocarp color created_by: Naama creation_date: 2010-07-15T03:47:35Z [Term] id: SP:0000348 name: internal color uniformity cross section synonym: "internal color uniformity latitudinal cross section" RELATED [SGN:NM] is_a: SP:0000347 ! fruit color uniformity internal created_by: Naama creation_date: 2010-07-15T03:52:29Z [Term] id: SP:0000349 name: internal color uniformity longitudinal is_a: SP:0000347 ! fruit color uniformity internal created_by: Naama creation_date: 2010-07-15T03:52:29Z [Term] id: SP:0000350 name: fruit color uniformity cross section percent red def: "Percentage of surface area with hue angle between 0-50 on a 0-360 scale." [SGN:DF] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000348 ! internal color uniformity cross section created_by: Naama creation_date: 2010-07-15T04:00:40Z [Term] id: SP:0000351 name: fruit color uniformity cross section percent yellow def: "Percentage of surface area with hue angle between 70-100 on a 0-360 scale." [SGN:DF] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000348 ! internal color uniformity cross section created_by: Naama creation_date: 2010-07-15T04:00:40Z [Term] id: SP:0000352 name: Cross section average RGB red def: "Measurement of the color red of the cross section on RGB scale." [SGN:DF] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000431 ! endocarp RGB-scale color created_by: Naama creation_date: 2010-07-15T04:07:07Z [Term] id: SP:0000353 name: endocarp cross section color is_a: SP:0000099 ! endocarp color created_by: Naama creation_date: 2010-07-15T04:10:25Z [Term] id: SP:0000354 name: endocarp longitudinal section is_a: SP:0000099 ! endocarp color created_by: Naama creation_date: 2010-07-15T04:10:25Z [Term] id: SP:0000355 name: Cross section average RGB green def: "Measurement of the color green of the cross section on RGB scale." [SGN:DF] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000431 ! endocarp RGB-scale color created_by: Naama creation_date: 2010-07-15T04:10:39Z [Term] id: SP:0000356 name: Cross section average RGB blue def: "Measurement of the color blue of the cross section on RGB scale." [SGN:DF] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000431 ! endocarp RGB-scale color created_by: Naama creation_date: 2010-07-15T04:10:55Z [Term] id: SP:0000357 name: Cross section average L value def: "THe average L value of all the pixels in CIELab color space." [JASHS:(2008) 133(4)\:579-586] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000430 ! endocarp Lab-scale color created_by: Naama creation_date: 2010-07-15T04:12:02Z [Term] id: SP:0000358 name: Cross section average 'a' value def: "The average 'a' value of all the pixels in CIELab color space." [JASHS:(2008) 133(4)\:579-586] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000430 ! endocarp Lab-scale color created_by: Naama creation_date: 2010-07-15T04:16:45Z [Term] id: SP:0000359 name: Cross section average 'b' value def: "THe average 'b' value of all the pixels in CIELab color space." [JASHS:(2008) 133(4)\:579-586] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000430 ! endocarp Lab-scale color created_by: Naama creation_date: 2010-07-15T04:17:20Z [Term] id: SP:0000360 name: Cross section average luminosity def: "A measure of brightness. Average luminosity of all the pixels in the cross section. Luminosity = (maxCol + minCol) * 240/(2* 255) where maxCol is the highest of the RGB values, and minCol is the lowest value per pixel." [JASHS:(2008) 133(4)\:579-586] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000353 ! endocarp cross section color created_by: Naama creation_date: 2010-07-15T04:20:01Z [Term] id: SP:0000361 name: Cross section average hue def: "Hue is a measure of color in CIELab colorspace. For 'a' values > 0, hue is 180/pi * cos[a / chroma]. For 'a' values < 0 , hues is 360 - {180/pi * acos[a / chroma] }." [JASHS:(2008) 133(4)\:579-586] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000353 ! endocarp cross section color created_by: Naama creation_date: 2010-07-15T04:23:43Z [Term] id: SP:0000362 name: Cross section average chroma def: "Chroma is a measure of saturation in CIELab colorspace. Chroma is the square root of (a^2 + b^2)." [JASHS:(2008) 133(4)\:579-586] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000353 ! endocarp cross section color created_by: Naama creation_date: 2010-07-15T04:27:15Z [Term] id: SP:0000363 name: flower fasciation is_a: SP:0000008 ! flower morphology created_by: Naama creation_date: 2010-07-19T10:27:21Z [Term] id: SP:0000364 name: peduncle def: "The stalk of an inflorescence; that part of the inflorescence below the first flower or inflorescence branch and above the last foliage leaf/pair of foliage leaves." [PO:0009053] synonym: "inflorescence abscission layer" RELATED [] xref: PO:0009053 is_a: SP:0000007 ! inflorescence created_by: Naama creation_date: 2010-07-19T10:44:41Z [Term] id: SP:0000365 name: fruit ripening timing is_a: SP:0000013 ! fruit ripening created_by: Naama creation_date: 2010-07-19T11:25:30Z [Term] id: SP:0000366 name: Number of days to fruit ripening def: "Number of days from sowing until 50% of plants have at least one fruit ripened." [] synonym: "days to fruit maturity" RELATED [] synonym: "fruit maturity" EXACT [] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000365 ! fruit ripening timing created_by: Naama creation_date: 2010-07-19T11:26:41Z [Term] id: SP:0000367 name: distal fruit end scar synonym: "blossom scar" RELATED [] relationship: part_of SP:0000070 ! distal fruit end shape created_by: Naama creation_date: 2010-07-19T11:30:20Z [Term] id: SP:0000368 name: distal fruit end scar size synonym: "blossom scar size" EXACT [] is_a: SP:0000367 ! distal fruit end scar created_by: Naama creation_date: 2010-07-19T11:31:07Z [Term] id: SP:0000369 name: proximal angle micro 2% def: "The angle between best-fit lines drawn through the fruit perimeter on either side of the proximal end point. The Micro Distance setting determines the percentage of the perimeter from the proximal end point at which to center the linear regression points used to find the best-fit line. The points comprising 1% of the perimeter on either side of that center point are used in the regression." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000074 ! proximal fruit end angle created_by: Naama creation_date: 2010-07-19T12:39:49Z [Term] id: SP:0000370 name: proximal angle macro 20% def: "The angle between best-fit lines drawn through the fruit perimeter on either side of the proximal end point. The Macro Distance setting determines the percentage of the perimeter from the proximal end point at which to center the linear regression points used to find the best-fit line. The points comprising 5% of the perimeter on either side of that center point are used in the regression." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000074 ! proximal fruit end angle created_by: Naama creation_date: 2010-07-19T12:40:13Z [Term] id: SP:0000371 name: pericarp relationship: part_of SP:0000037 ! fruit created_by: Naama creation_date: 2010-07-19T01:12:38Z [Term] id: SP:0000372 name: pericarp thickness, calculation in centimetes def: "Pericarp thickness in cm." [SGN:EVDK] synonym: "pericarp width" RELATED [] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000371 ! pericarp created_by: Naama creation_date: 2010-07-19T01:14:10Z [Term] id: SP:0000373 name: fruit anthocyanin content is_a: SP:0000016 ! anthocyanin content is_a: SP:0000167 ! fruit metabolites created_by: Naama creation_date: 2010-09-17T03:40:45Z [Term] id: SP:0000374 name: Cotyledon relationship: part_of SP:0000001 ! seedling created_by: Naama creation_date: 2011-01-17T11:45:36Z [Term] id: SP:0000375 name: cotyledon color relationship: part_of SP:0000374 ! Cotyledon created_by: Naama creation_date: 2011-01-17T11:47:14Z [Term] id: SP:0000376 name: cotyledon number relationship: part_of SP:0000374 ! Cotyledon created_by: Naama creation_date: 2011-01-17T11:47:14Z [Term] id: SP:0000377 name: cotyledon size relationship: part_of SP:0000374 ! Cotyledon created_by: Naama creation_date: 2011-01-17T11:47:14Z [Term] id: SP:0000378 name: cotyledon morphology relationship: part_of SP:0000374 ! Cotyledon created_by: Naama creation_date: 2011-01-17T11:47:14Z [Term] id: SP:0000379 name: seed germination inside fruit def: "The seed begins germinating inside the fruit. Often associated with a delay in fruit harvesting (the fruit is too ripe), the pre- germination could also be caused by an altered fruit flesh pH or by hormonal imbalance." [LycoTILL:OD] is_a: SP:0000110 ! germination is_a: SP:0000197 ! post harvest quality created_by: Naama creation_date: 2011-01-31T09:54:16Z [Term] id: SP:0000380 name: increased fruit number is_a: SP:0000106 ! fruit number created_by: Naama creation_date: 2011-01-31T09:59:18Z [Term] id: SP:0000381 name: decreased fruit number is_a: SP:0000106 ! fruit number created_by: Naama creation_date: 2011-01-31T09:59:18Z [Term] id: SP:0000382 name: no fruit setting is_a: SP:0000106 ! fruit number created_by: Naama creation_date: 2011-01-31T09:59:18Z [Term] id: SP:0000383 name: intermediate inflorescence xref: PO:0001083 xref: PO:0009049 is_a: SP:0000473 ! inflorescence structure - phenotypic values created_by: Naama creation_date: 2011-09-16T02:49:09Z [Term] id: SP:0000384 name: fruit height at widest position asymmetry def: "The ratio of the height at which the maximum width occurs, to the maximum height." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000058 ! fruit shape eccentric created_by: Naama creation_date: 2011-09-26T10:46:06Z [Term] id: SP:0000385 name: sugars is_a: SP:0000019 ! biochemical metabolites created_by: Naama creation_date: 2012-11-01T04:06:13Z [Term] id: SP:0000386 name: fructose is_a: SP:0000385 ! sugars created_by: Naama creation_date: 2012-11-01T04:07:53Z [Term] id: SP:0000387 name: field sucrose def: "sucrose measured in the field (mg/g fresh weight)." [SGN:NM] is_a: SP:0000214 ! sucrose created_by: Naama creation_date: 2012-11-01T04:16:50Z [Term] id: SP:0000388 name: storage sucrose def: "sucrose measured in storage (mg/g fresh weight)." [SGN:NM] is_a: SP:0000197 ! post harvest quality is_a: SP:0000214 ! sucrose created_by: Naama creation_date: 2012-11-01T04:18:34Z [Term] id: SP:0000389 name: field glucose def: "glucose measured in the field (mg/g fresh weight)" [SGN:NM] is_a: SP:0000215 ! glucose created_by: Naama creation_date: 2012-11-01T04:19:27Z [Term] id: SP:0000390 name: storage glucose def: "glucose measured in the field (mg/g fresh weight)." [SGN:NM] is_a: SP:0000197 ! post harvest quality is_a: SP:0000215 ! glucose created_by: Naama creation_date: 2012-11-01T04:19:27Z [Term] id: SP:0000391 name: potato fry color def: "potato fry color rating based on reflectance measured from light to dark." [SGN:NM] is_a: SP:0000221 ! processing quality created_by: Naama creation_date: 2012-11-01T04:24:02Z [Term] id: SP:0000392 name: tuber flesh color blue xref: PATO:0000952 xref: PO:0025038 xref: solcap:1 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2012-11-02T04:02:18Z [Term] id: SP:0000393 name: tuber flesh color dark-yellow to orange xref: PATO:0001944 xref: PO:0025038 xref: solcap:5 is_a: SP:0000188 ! tuber flesh color created_by: Naama creation_date: 2012-11-02T04:03:23Z [Term] id: SP:0000394 name: fruit dry weight percentage def: "Net dry weight (after 1 week in oven) divided by net fresh weight of the fruit and multiplied by 100." [SGN:EVDK] synonym: "fruit solids percentage" EXACT [] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000080 ! fruit mass, weight in grams created_by: naama creation_date: 2017-02-06T15:17:20Z [Term] id: SP:0000395 name: columella and placenta area measurement in square centimeters, cm^2 def: "The area of the fruit columella and placenta in cm^2. The area of the fruit columella and placenta of fruits sliced at the equatorial axis." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000010 ! fruit size created_by: naama creation_date: 2017-09-07T14:56:35Z [Term] id: SP:0000396 name: pericarp cell layers, counting def: "Number of cell layers in the tomato pericarp in axial abaxial axis. Counting the number of cells intersected by a line perpendicular to the exocarp, avoiding vascular bundles, endocarp layer, 2-4 small cell layers right bellow the exocarp, and 0-1 layers right above the endocarp." [SGN:NM] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000397 ! pericarp cells created_by: naama creation_date: 2017-09-07T14:58:51Z [Term] id: SP:0000397 name: pericarp cells is_a: SP:0000371 ! pericarp created_by: naama creation_date: 2017-09-07T15:00:10Z [Term] id: SP:0000398 name: pericarp max cell size, calculation in square micrometers, um^2 def: "Size of the biggest tomato cells in the pericarp in um^2." [SGN:NM] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000397 ! pericarp cells created_by: naama creation_date: 2017-09-07T15:00:56Z [Term] id: SP:0000399 name: number of leaves between 2nd and 3rd inflorescence xref: PATO:0000053 xref: PO:0007047 xref: PO:0009025 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000109 ! leaf number created_by: naama creation_date: 2017-09-07T15:16:39Z [Term] id: SP:0000400 name: number of leaves between 3rd and 4th inflorescence xref: PATO:0000053 xref: PO:0007047 xref: PO:0009025 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000109 ! leaf number created_by: naama creation_date: 2017-09-07T15:17:08Z [Term] id: SP:0000401 name: qualitative plant size is_a: SP:0000002 ! plant size created_by: naama creation_date: 2017-09-07T15:18:54Z [Term] id: SP:0000402 name: plant height def: "The height of the full grown plant in cm." [SGN:NM] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000002 ! plant size created_by: naama creation_date: 2017-09-07T15:19:52Z [Term] id: SP:0000403 name: plant height until first inflorescence def: "The height of the plant until the first inflorescence in cm" [SGN:NM] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000002 ! plant size created_by: naama creation_date: 2017-09-07T15:20:37Z [Term] id: SP:0000404 name: plant height until last inflorescence def: "The height of the plant until the last inflorescence in cm" [SGN:NM] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000002 ! plant size created_by: naama creation_date: 2017-09-07T15:21:24Z [Term] id: SP:0000405 name: total number of inflorescences def: "Count of the number of inflorescences." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000007 ! inflorescence created_by: naama creation_date: 2017-09-07T15:23:57Z [Term] id: SP:0000406 name: stem width def: "The width of the stem in mm" [] is_a: SP:0000193 ! stem created_by: naama creation_date: 2017-09-12T12:19:16Z [Term] id: SP:0000407 name: Stem width between 2nd and 3rd inflorescence (mm) def: "Stem width between 2nd and 3rd inflorescence, measured in mm at complete developmental stage." [SGn:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000406 ! stem width created_by: naama creation_date: 2017-09-12T12:23:15Z [Term] id: SP:0000408 name: Stem width between 3rd and 4th inflorescence (mm) def: "Stem width between 3rd and 4th inflorescence, measured in mm at complete developmental stage." [SGn:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000406 ! stem width created_by: naama creation_date: 2017-09-12T12:24:40Z [Term] id: SP:0000409 name: number of flowers in second inflorescence def: "Count the number of flowers in the second inflorescence." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000117 ! flower number created_by: naama creation_date: 2017-09-12T12:43:06Z [Term] id: SP:0000410 name: number of flowers in third inflorescence def: "Count the number of flowers in the third inflorescence." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000117 ! flower number created_by: naama creation_date: 2017-09-12T12:44:18Z [Term] id: SP:0000411 name: sepal is_a: SP:0000008 ! flower morphology created_by: naama creation_date: 2017-09-12T12:57:55Z [Term] id: SP:0000412 name: petal relationship: part_of SP:0000008 ! flower morphology created_by: naama creation_date: 2017-09-12T12:58:14Z [Term] id: SP:0000413 name: number of sepals def: "Count sepals per flower." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000411 ! sepal created_by: naama creation_date: 2017-09-12T12:58:24Z [Term] id: SP:0000414 name: number of petals def: "Count petals per flower." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000412 ! petal created_by: naama creation_date: 2017-09-12T12:59:11Z [Term] id: SP:0000415 name: petal lengh def: "Average length of petals from a representative flower per plant. Length measured in cm. from the centre of the flower to the end of the petal." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000412 ! petal created_by: naama creation_date: 2017-09-12T13:00:12Z [Term] id: SP:0000416 name: petal width def: "Average width of petals from a representative flower per plant. Width measured in cm. between the join point of the petals." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000412 ! petal created_by: naama creation_date: 2017-09-12T13:01:44Z [Term] id: SP:0000417 name: sepal lengh def: "Average length of sepals from a representative flower per plant. Length is measured in cm. from the pedicel to the end of the sepal." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000411 ! sepal created_by: naama creation_date: 2017-09-12T13:03:58Z [Term] id: SP:0000418 name: sepal width def: "Average width of sepals from a representative flower per plant. Width was measured in cm. between the join point of the sepals." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000411 ! sepal created_by: naama creation_date: 2017-09-12T13:04:04Z [Term] id: SP:0000419 name: anther relationship: part_of SP:0000443 ! stamen created_by: naama creation_date: 2017-09-12T13:35:52Z [Term] id: SP:0000420 name: pistil relationship: part_of SP:0000008 ! flower morphology created_by: naama creation_date: 2017-09-12T13:36:04Z [Term] id: SP:0000421 name: ovary is_a: SP:0000008 ! flower morphology created_by: naama creation_date: 2017-09-12T13:36:21Z [Term] id: SP:0000422 name: anther length measurement in cm def: "Length of the anthers in cm." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000419 ! anther created_by: naama creation_date: 2017-09-12T13:36:34Z [Term] id: SP:0000423 name: pistil length in cm def: "Length of the pistil in cm." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000420 ! pistil created_by: naama creation_date: 2017-09-12T13:37:40Z [Term] id: SP:0000424 name: ovary length def: "Length of the ovary in cm." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000421 ! ovary created_by: naama creation_date: 2017-09-12T13:38:20Z [Term] id: SP:0000425 name: fruit curved height def: "The height measured along a curved line through the fruit, passing through the midpoints of opposing pairs of points on either side of the distal and proximal points. cm." [SGN:EVDK] xref: PATO:0000122 xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000086 ! fruit length created_by: naama creation_date: 2017-09-12T13:58:59Z [Term] id: SP:0000426 name: curved fruit shape index def: "The ratio of curved height to the width of the fruit at mid-curved-height, as measured perpendicular to the curved height line." [SGN:EVDK] xref: PO:0007010 xref: PO:0007042 xref: PO:0009001 is_a: SP:0000500 ! Variables relationship: variable_of SP:0000039 ! fruit shape index created_by: naama creation_date: 2017-09-12T14:03:15Z [Term] id: SP:0000427 name: stem length is_a: SP:0000193 ! stem created_by: naama creation_date: 2017-09-22T12:03:07Z [Term] id: SP:0000428 name: stem length between 1st and 10th true leaves (cm) def: "The distance between the 1st and the 10th leaf in cm. Recorded at complete developmental stage." [SGn:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000427 ! stem length created_by: naama creation_date: 2017-09-22T12:03:26Z [Term] id: SP:0000429 name: inflorescence length def: "The distance from the stem to the last flower along the rachis of the inflorescence." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000007 ! inflorescence created_by: naama creation_date: 2017-09-22T12:06:11Z [Term] id: SP:0000430 name: endocarp Lab-scale color is_a: SP:0000353 ! endocarp cross section color created_by: naama creation_date: 2017-09-22T13:21:52Z [Term] id: SP:0000431 name: endocarp RGB-scale color is_a: SP:0000353 ! endocarp cross section color created_by: naama creation_date: 2017-09-22T13:23:11Z [Term] id: SP:0000432 name: epicarp Lab-scale color is_a: SP:0000097 ! epicarp color created_by: naama creation_date: 2017-09-22T13:25:16Z [Term] id: SP:0000433 name: epicarp Lab-scale 'L' value def: "Epicarp 'L' color value was recorded in a point close to pistil scar. Color is recorded in L*a*b color system using a colorimeter." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000432 ! epicarp Lab-scale color created_by: naama creation_date: 2017-09-22T13:25:35Z [Term] id: SP:0000434 name: epicarp Lab-scale 'a' value def: "Epicarp 'a' color value was recorded in a point close to pistil scar. Color is recorded in L*a*b color system using a colorimeter." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000432 ! epicarp Lab-scale color created_by: naama creation_date: 2017-09-22T13:27:36Z [Term] id: SP:0000435 name: epicarp Lab-scale 'b' value def: "Epicarp 'b' color value was recorded in a point close to pistil scar. Color is recorded in L*a*b color system using a colorimeter." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000432 ! epicarp Lab-scale color created_by: naama creation_date: 2017-09-22T13:27:50Z [Term] id: SP:0000436 name: leaflets number is_a: SP:0000109 ! leaf number created_by: naama creation_date: 2017-09-22T13:40:25Z [Term] id: SP:0000437 name: number of primary leaflets per leaf def: "Number of primary leaflets per leaf. Counting in fully opened leaves when the plant is completely developed." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000436 ! leaflets number created_by: naama creation_date: 2017-09-22T13:40:46Z [Term] id: SP:0000438 name: number of secondary leaflets per leaf def: "Number of secondary leaflets per leaf. Counting in fully opened leaves when the plant is completely developed." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000436 ! leaflets number created_by: naama creation_date: 2017-09-22T13:41:28Z [Term] id: SP:0000439 name: leaf habit def: "Traits related to leaf habit." [] is_a: SP:0000108 ! leaf created_by: naama creation_date: 2017-12-14T15:53:18Z [Term] id: SP:0000440 name: leaf habit visual rating 1-9 scale def: "Description of the way the leaves are held naturally. Recorded at complete developmental stage of the plant. Visual rating 1-9 score (1:semi-erect, 3:semi-horizontal, 5:horizontal, 7:horizontal-drooping, 9:drooping)." [SGN:NM] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000439 ! leaf habit created_by: naama creation_date: 2017-12-14T15:55:33Z [Term] id: SP:0000441 name: stem anthocyanin content def: "Anthocyanin content in the stem of mature plants." [] is_a: SP:0000500 ! Variables relationship: part_of SP:0000343 ! hypocotyl relationship: variable_of SP:0000016 ! anthocyanin content created_by: naama creation_date: 2017-12-15T15:43:57Z [Term] id: SP:0000442 name: petals curvature observation 1-7 scale def: "The common position of the petals of fully opened flowers. 1-7 score (3:low, 5:intermediate, 7:strong)." [SGN:NM] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000412 ! petal created_by: naama creation_date: 2017-12-15T16:58:22Z [Term] id: SP:0000443 name: stamen relationship: part_of SP:0000008 ! flower morphology created_by: naama creation_date: 2017-12-15T17:14:56Z [Term] id: SP:0000444 name: stamen color observation 3-7 scale def: "Stamen color of fully opened flowers. 3-7 scale (3:yellow, 5:pale orange, 7:orange)." [SGN:NM] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000443 ! stamen created_by: naama creation_date: 2017-12-15T17:16:28Z [Term] id: SP:0000445 name: style relationship: part_of SP:0000420 ! pistil created_by: naama creation_date: 2017-12-21T16:11:56Z [Term] id: SP:0000446 name: style exertion. Visual rating 1-4 def: "The position of the style compared to the stamens. 1-4 score (1:inserted, 2:same level as stamen, 3:slightly exerted, 4:highly exerted)." [SGN:NM] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000445 ! style created_by: naama creation_date: 2017-12-21T16:13:08Z [Term] id: SP:0000447 name: fruit color phenotypic values def: "Historic terms - avoid using for future trials/experiments." [SGN:NM] is_a: SP:0000097 ! epicarp color created_by: naama creation_date: 2017-12-21T16:20:16Z [Term] id: SP:0000448 name: immature green fruit epicarp color, observation nominal scale 3-9 def: "Color observation of immature green fruit. 3-9 score (3:green-white, 5:light green, 7:green, 9:dark green)." [SGN:NM] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000097 ! epicarp color relationship: variable_of SP:0000453 ! immature green fruit created_by: naama creation_date: 2017-12-22T14:40:01Z [Term] id: SP:0000449 name: epicarp fruit color, observation nominal scale 0-6 def: "Fruit color of the epicarp. Exterior color of mature fruit. 0-6 score (0:yellow, 1:yellow-orange, 2:orange, 3:red-orange, 4:pink, 5:red, 6:intense red)." [SGN:NM] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000097 ! epicarp color created_by: naama creation_date: 2017-12-22T15:06:06Z [Term] id: SP:0000450 name: fruit skin color. Nominal score 0-1 def: "The color of the fruit epidermis. 0-1 score (0:colorless, 1:yellow)." [SGN:NM] synonym: "fruit epidermis color" EXACT [] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000097 ! epicarp color created_by: naama creation_date: 2017-12-22T15:10:17Z [Term] id: SP:0000451 name: fruit pedicel scar relationship: part_of SP:0000011 ! fruit morphology created_by: naama creation_date: 2017-12-22T15:29:59Z [Term] id: SP:0000452 name: fruit pedicel scar width. Observation 3-7 nominal scale def: "Scar width at the widest part of the pedicel scar. 3-7 score (3:narrow, 5:medium, 7:wide)." [SGN:NM] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000451 ! fruit pedicel scar created_by: naama creation_date: 2017-12-22T15:30:20Z [Term] id: SP:0000453 name: immature green fruit relationship: part_of SP:0000013 ! fruit ripening created_by: naama creation_date: 2017-12-22T15:35:04Z [Term] id: SP:0000454 name: longitudinal stripes presence on immature green fruits. Observation 0-1 scale def: "Presence of longitudinal stripes on immature fruits. 0-1 score (0:absence, 1:present)." [SGN:NM] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000453 ! immature green fruit created_by: naama creation_date: 2017-12-22T15:36:50Z [Term] id: SP:0000455 name: leaf dissection is_a: SP:0000004 ! leaf morphology created_by: naama creation_date: 2017-12-22T15:45:56Z [Term] id: SP:0000456 name: leaf dissection. Observation 0-2 nominal scale def: "The extent of dissection in a fully opened leaf. 0-2 score (0:low, 1:intermediate, 2:high)." [SGN:NM] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000455 ! leaf dissection created_by: naama creation_date: 2017-12-22T15:47:00Z [Term] id: SP:0000457 name: leaf border is_a: SP:0000004 ! leaf morphology created_by: naama creation_date: 2017-12-22T15:49:28Z [Term] id: SP:0000458 name: leaf border variable. Observation 0-3 nominal scale def: "The outline of fully opened leaf. 0-3 score (0:entire, 1:undulate, 2:serrated, 3:strong serrated)." [SGN:NM] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000457 ! leaf border created_by: naama creation_date: 2017-12-22T15:52:41Z [Term] id: SP:0000459 name: proximal angle micro 3% def: "The angle between best-fit lines drawn through the fruit perimeter on either side of the proximal end point. The Micro Distance setting determines the percentage of the perimeter from the proximal end point at which to center the linear regression points used to find the best-fit line. The points comprising 1.5% of the perimeter on either side of that center point are used in the regression." [SGN:EVDK] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000074 ! proximal fruit end angle created_by: naama creation_date: 2017-12-22T15:55:07Z [Term] id: SP:0000460 name: fruit calyx relationship: part_of SP:0000069 ! fruit end created_by: naama creation_date: 2018-01-02T11:48:52Z [Term] id: SP:0000461 name: Ribbing calyx end. Observation 0-9 scale def: "An arrangement of ribs surrounding the calyx end of a full size fruit. 0-9 score (0:absent, 3:very weak, 5:weak, 7:intermediate, 9:strong)." [SGN:NM] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000460 ! fruit calyx created_by: naama creation_date: 2018-01-02T11:49:08Z [Term] id: SP:0000462 name: fruit size value def: "Historic phenotype values for fruit size." [] is_a: SP:0000010 ! fruit size created_by: naama creation_date: 2018-01-09T15:13:55Z [Term] id: SP:0000463 name: fruit shape phenotypic values def: "Phenotype values for fruit shape. Used historically, should not be used anymore for recording fruit traits/variables." [] is_a: SP:0000038 ! fruit shape created_by: naama creation_date: 2018-01-09T15:15:57Z [Term] id: SP:0000464 name: vascular bundle relationship: part_of SP:0000030 ! vascular tissue created_by: naama creation_date: 2018-03-29T14:49:24Z [Term] id: SP:0000465 name: vascular bundle content def: "Scored in mature green fruit. Vascular bundles network for water transportation. It begins in the stem scar and runs to the locules through the placenta while also extending to the outer pericarp. Visual score 0-7 (0:absent, 3:slight, 5:intermediate, 7:severe)." [SGN:MJD] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000464 ! vascular bundle relationship: variable_of SP:0000466 ! mature green fruit created_by: naama creation_date: 2018-03-29T14:49:36Z [Term] id: SP:0000466 name: mature green fruit relationship: part_of SP:0000013 ! fruit ripening created_by: naama creation_date: 2018-03-29T14:52:19Z [Term] id: SP:0000467 name: leaf type. Observation. def: "0-2 score (0:pimpinellifolium, 1:standard, 2:double feathered)." [SGN:MJD] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000045 ! leaf complexity created_by: naama creation_date: 2018-03-29T15:07:38Z [Term] id: SP:0000468 name: leaf complexity phenotpic values def: "terms used historically to describe leaf complexity mutations." [SGN:NM] is_a: SP:0000045 ! leaf complexity created_by: naama creation_date: 2018-03-29T15:10:56Z [Term] id: SP:0000469 name: plant habit phenotypic values def: "historic terms for describing plant habit mutations." [SGN:NM] is_a: SP:0000128 ! plant habit index created_by: naama creation_date: 2018-03-29T15:13:29Z [Term] id: SP:0000470 name: plant growth habit, visual observation nominal scale def: "0-Determinate, 1-Semi-determinate, 2-Indeterminate." [SGN:MJD] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000128 ! plant habit index created_by: naama creation_date: 2018-03-29T15:14:29Z [Term] id: SP:0000471 name: leaf color phenotypic values def: "historic values for leaf color mutations." [SGN:NM] is_a: SP:0000005 ! leaf color created_by: naama creation_date: 2018-03-29T15:17:03Z [Term] id: SP:0000472 name: green leaf color, visual observation 3-7 scale def: "3:Light green, 5:medium green, 7:dark green." [SGN:MJD] synonym: "foliage color" EXACT [] synonym: "leaf color" EXACT [] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000005 ! leaf color created_by: naama creation_date: 2018-03-29T15:17:54Z [Term] id: SP:0000473 name: inflorescence structure - phenotypic values def: "historic phenotypic values for inflorescence structure used for describing mutations." [SGN:NM] is_a: SP:0000071 ! inflorescence structure created_by: naama creation_date: 2018-03-29T15:24:30Z [Term] id: SP:0000474 name: inflorescence type, nominal scale def: "1: uniparous, 2: fishbone, 3: forked, 4- irregular." [SGN:MJD] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000071 ! inflorescence structure created_by: naama creation_date: 2018-03-29T15:25:57Z [Term] id: SP:0000475 name: leafy inflorescence, observation 0-2 scale def: "Scored when the inflorescence is completely developed. 0-2 score (0:absent, 1:leaves, 2:leaves and shoots)." [SGN:MJD] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000071 ! inflorescence structure created_by: naama creation_date: 2018-03-29T15:33:10Z [Term] id: SP:0000476 name: flower color phenotypic values def: "Historic values used to describe flower color mutants." [SGN:NM] is_a: SP:0000009 ! flower color created_by: naama creation_date: 2018-03-29T15:40:35Z [Term] id: SP:0000477 name: flower color, observation 1-7 nominal scale def: "3: Pale yellow, 5: Yellow, 7: Yellow-orange." [SGN:NM] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000009 ! flower color created_by: naama creation_date: 2018-03-29T15:41:30Z [Term] id: SP:0000478 name: proximal fruit end color, observation 0-7 nominal scale def: "0: Uniform, 3: Light green, 5: Medium green, 7: Dark green." [SGN:MJD] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000182 ! proximal fruit end color created_by: naama creation_date: 2018-03-29T15:44:49Z [Term] id: SP:0000479 name: distal fruit end scar shape is_a: SP:0000367 ! distal fruit end scar created_by: naama creation_date: 2018-03-29T15:47:45Z [Term] id: SP:0000480 name: distal fruit end scar shape, observation 1-7 nominal scale def: "1: dot, 3: linear, 5: star, 7: irregular." [SGN:MJD] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000479 ! distal fruit end scar shape created_by: naama creation_date: 2018-03-29T15:48:06Z [Term] id: SP:0000481 name: fruit fasciation is_a: SP:0000038 ! fruit shape created_by: naama creation_date: 2018-03-29T15:50:50Z [Term] id: SP:0000482 name: fruit fasciation, observation 0-7 ordinal scale def: "0: Not present, 3: low, 5: intermediate, 7: severe." [SGN:MJD] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000481 ! fruit fasciation created_by: naama creation_date: 2018-03-29T15:51:48Z [Term] id: SP:0000500 name: Variables is_a: SP:0001000 ! Solanaceae phenotype ontology [Term] id: SP:0000501 name: Old gold crimson flower color observation boolean def: "Crimson is the flower color conditioned by the recessive gene (ogc). There is a positive correlation between crimson color and dark red fruit color. Boolean trait 0 = absent, 1= present." [SGN:NM] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000009 ! flower color created_by: naama creation_date: 2023-06-26 [Term] id: SP:0000502 name: flower abcission zone is_a: SP:0000008 ! flower morphology created_by: naama creation_date: 2023-06-29 [Term] id: SP:0000503 name: Jointless flower abcission zone. Observation 0 = absent, 1 = present def: "Presence or absence of the \"jointless\" mutation. JOINTLESS accounts for the failure of activation of pedicel abcission zone development." [] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000502 ! flower abcission zone created_by: naama creation_date: 2023-06-29 [Term] id: SP:0000504 name: plant growth habit observation 1-4 scale def: "Visual observation of the plant growth habit. 1= dwarf, 2= determinate, 3= semi-determinate, 4 = indeterminate." [] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000128 ! plant habit index created_by: naama creation_date: 2023-06-29 [Term] id: SP:0000505 name: foliage density, visual observation 3-7 scale def: "3 = sparse, 5 = intermediate, 7 = dense." [SGN:MJD] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000108 ! leaf created_by: naama creation_date: 2023-06-29 [Term] id: SP:0000506 name: fruiting estimation 0-5 scale def: "Visual estimation of fruiting 0 = low, 5= high." [SGN:DP] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000037 ! fruit created_by: naama creation_date: 2023-06-29 [Term] id: SP:0000507 name: fruit smoothness visual estimation 0-5 def: "Visual estimation of fruit smoothness. 0 = low, 5= high." [SGN:DP] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000124 ! epicarp texture created_by: naama creation_date: 2023-06-29 [Term] id: SP:0000508 name: plant vigor visual estimation 0-5 def: "Visual estimation of plant vigor 0 = low, 5= high." [SGN:DP] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000003 ! plant habit created_by: naama creation_date: 2023-06-29 [Term] id: SP:0000509 name: Fruit shape. Visual observation 1-9 nominal scale def: "Visual observation of fruit shape. 1 = Flattened (oblate), 2 = Slightly flattened, 3 = Rounded, 4 = High rounded, 5 = Heart-shaped, 6 = Cylindrical (long oblong), 7 = Pyriform, 8 = Ellipsoid (plum-shaped), 9 = Other. Apapted from IPGRI descriptors for tomato." [SGN:DP] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000038 ! fruit shape created_by: naama creation_date: 2023-06-29 [Term] id: SP:0000510 name: Plant preference score. Visual estimation 0-5 def: "Plant preference score is an overall score based on fruiting, plant type, and plant health. Scored at 0 to 5, where 0 = the most non-preferred plant, 5 = the best." [SGN:DP] synonym: "PPS" EXACT [] is_a: SP:0000500 ! Variables relationship: variable_of SP:0000003 ! plant habit created_by: naama creation_date: 2023-06-29 [Term] id: SP:0000706 name: male sterility synonym: "TO:0000437" RELATED [] xref: PO:0007042 xref: PO:0007616 xref: PO:0009046 is_a: SP:0000141 ! partial sterility is_a: SP:0000142 ! full sterility [Term] id: SP:0000707 name: female sterility synonym: "TO:0000358" RELATED [] xref: PO:0007042 xref: PO:0007616 xref: PO:0009046 is_a: SP:0000141 ! partial sterility is_a: SP:0000142 ! full sterility [Term] id: SP:0000708 name: fruit glucose/fructose ratio def: "total fruit glucose divided by total fruit fructose." [SGN:NM] is_a: SP:0000500 ! Variables relationship: attribute_of SP:0000167 ! fruit metabolites relationship: variable_of SP:0000711 ! derived biochemical metabolites traits [Term] id: SP:0000709 name: fruit sugars/acids ratio def: "sum of fruit sugars (glucose+fructose) divided by the sum of fruit acids (malic + citric acid)." [SGN:NM] is_a: SP:0000500 ! Variables relationship: attribute_of SP:0000167 ! fruit metabolites relationship: variable_of SP:0000711 ! derived biochemical metabolites traits [Term] id: SP:0000710 name: fruit citric acid/malic acid ratio def: "total fruit citric acid divided by total fruit malic acid." [SGN:NM] is_a: SP:0000500 ! Variables relationship: attribute_of SP:0000167 ! fruit metabolites relationship: variable_of SP:0000711 ! derived biochemical metabolites traits [Term] id: SP:0000711 name: derived biochemical metabolites traits def: "metabolite traits calculated from the values of two or more other biochemmical metabolite traits." [SGN:NM] is_a: SP:0000019 ! biochemical metabolites [Term] id: SP:0001000 name: Solanaceae phenotype ontology [Typedef] id: attribute_of name: attribute_of [Typedef] id: part_of name: part of [Typedef] id: variable_of name: variable_of