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It includes automatic high-accurate registration (6D\nsimultaneous localization and mapping, 6D SLAM) and other tools, e.g., a\nfast 3D viewer, plane extraction software, etc. Several file formats for\nthe point clouds are natively supported, new formats can be implemented\neasily.\n", "version": [ { "downloads": [ [] ], "version": "1.2" }, { "branch": "trunk", "version": "trunk" } ] }, "3proxy": { "alias": [], "categories": [], "dependencies": [ "c", "gmake" ], "downloads": [ "https://github.com/z3APA3A/3proxy/archive/0.8.13.tar.gz", "https://github.com/z3APA3A/3proxy/archive/0.8.12.tar.gz", "https://github.com/z3APA3A/3proxy/archive/0.8.11.tar.gz" ], "homepages": [ "https://3proxy.org" ], "licenses": [], "maintainers": [], "name": "3proxy", "patches": [], "summary": "3proxy - tiny free proxy server\n", "version": [ { "downloads": [ "https://github.com/z3APA3A/3proxy/archive/0.8.11.tar.gz" ], "version": "0.8.11" }, { "downloads": [ "https://github.com/z3APA3A/3proxy/archive/0.8.12.tar.gz" ], "version": "0.8.12" }, { "downloads": [ "https://github.com/z3APA3A/3proxy/archive/0.8.13.tar.gz" ], "version": "0.8.13" } ] }, "7zip": { "alias": [], "categories": [ "windows", "detectable" ], "dependencies": [ "c", "cxx" ], "downloads": [ "https://prdownloads.sourceforge.net/sevenzip/files/7z2107-src.tar.xz" ], "homepages": [ "https://sourceforge.net/projects/sevenzip/" ], "licenses": [ "LGPL-2.0-only" ], "maintainers": [], "name": "7zip", "patches": [ "noexcept_typedef.patch when platform=windows" ], "summary": "7-Zip is a file archiver for Windows\n", "version": [ { "downloads": [ "https://prdownloads.sourceforge.net/sevenzip/files/7z2107-src.tar.xz" ], "version": "21.07" } ] }, "abacus": { "alias": [], "categories": [], "dependencies": [ "c", "cereal", "cxx", "elpa", "fftw", "gmake", "libxc", "mkl", "mpi" ], "downloads": [ "https://github.com/abacusmodeling/abacus-develop/archive/refs/tags/vdevelop.tar.gz", "https://github.com/abacusmodeling/abacus-develop/archive/refs/tags/v2.2.3.tar.gz", "https://github.com/abacusmodeling/abacus-develop/archive/refs/tags/v2.2.2.tar.gz", "https://github.com/abacusmodeling/abacus-develop/archive/refs/tags/v2.2.1.tar.gz", "https://github.com/abacusmodeling/abacus-develop/archive/refs/tags/v2.2.0.tar.gz", "https://github.com/abacusmodeling/abacus-develop.git" ], "homepages": [ "http://abacus.ustc.edu.cn/" ], "licenses": [ "LGPL-3.0-or-later" ], "maintainers": [ "bitllion" ], "name": "abacus", "patches": [], "summary": "ABACUS (Atomic-orbital Based Ab-initio Computation at UStc) is an open-\nsource computer code package aiming for large-scale electronic-structure\nsimulations from first principles\n", "version": [ { "downloads": [ "https://github.com/abacusmodeling/abacus-develop/archive/refs/tags/v2.2.0.tar.gz" ], "version": "2.2.0" }, { "downloads": [ "https://github.com/abacusmodeling/abacus-develop/archive/refs/tags/v2.2.1.tar.gz" ], "version": "2.2.1" }, { "downloads": [ "https://github.com/abacusmodeling/abacus-develop/archive/refs/tags/v2.2.2.tar.gz" ], "version": "2.2.2" }, { "downloads": [ "https://github.com/abacusmodeling/abacus-develop/archive/refs/tags/v2.2.3.tar.gz" ], "version": "2.2.3" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/abacusmodeling/abacus-develop.git" } ], "version": "develop" } ] }, "abduco": { "alias": [], "categories": [], "dependencies": [ "c", "gmake" ], "downloads": [ "https://github.com/martanne/abduco/archive/v0.6.tar.gz", "https://github.com/martanne/abduco/archive/v0.5.tar.gz", "https://github.com/martanne/abduco/archive/v0.4.tar.gz" ], "homepages": [ "https://github.com/martanne/abduco" ], "licenses": [ "ISC" ], "maintainers": [], "name": "abduco", "patches": [], "summary": "abduco provides session management i.e. it allows programs to be run\nindependently from its controlling terminal. That is programs can be\ndetached - run in the background - and then later reattached. Together\nwith dvtm it provides a simpler and cleaner alternative to tmux or\nscreen.\n", "version": [ { "downloads": [ "https://github.com/martanne/abduco/archive/v0.4.tar.gz" ], "version": "0.4" }, { "downloads": [ "https://github.com/martanne/abduco/archive/v0.5.tar.gz" ], "version": "0.5" }, { "downloads": [ "https://github.com/martanne/abduco/archive/v0.6.tar.gz" ], "version": "0.6" } ] }, "abi-compliance-checker": { "alias": [], "categories": [], "dependencies": [ "abi-dumper", "binutils", "gmake", "perl", "universal-ctags" ], "downloads": [ "https://github.com/lvc/abi-compliance-checker/archive/2.3.tar.gz", "https://github.com/lvc/abi-compliance-checker/archive/2.2.tar.gz", "https://github.com/lvc/abi-compliance-checker/archive/2.1.tar.gz" ], "homepages": [ "https://github.com/lvc/abi-compliance-checker" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "abi-compliance-checker", "patches": [], "summary": "A tool for checking backward compatibility of a C/C++ library API.\n", "version": [ { "downloads": [ "https://github.com/lvc/abi-compliance-checker/archive/2.1.tar.gz" ], "version": "2.1" }, { "downloads": [ "https://github.com/lvc/abi-compliance-checker/archive/2.2.tar.gz" ], "version": "2.2" }, { "downloads": [ "https://github.com/lvc/abi-compliance-checker/archive/2.3.tar.gz" ], "version": "2.3" } ] }, "abi-dumper": { "alias": [], "categories": [], "dependencies": [ "binutils", "elfutils", "gmake", "perl", "universal-ctags", "vtable-dumper" ], "downloads": [ "https://github.com/lvc/abi-dumper/archive/1.2.tar.gz", "https://github.com/lvc/abi-dumper/archive/1.1.tar.gz", "https://github.com/lvc/abi-dumper/archive/1.0.tar.gz", "https://github.com/lvc/abi-dumper/archive/0.99.19.tar.gz" ], "homepages": [ "https://github.com/lvc/abi-dumper" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "abi-dumper", "patches": [], "summary": "ABI Dumper is a tool to dump ABI of an ELF object containing DWARF debug\ninfo.\n", "version": [ { "downloads": [ "https://github.com/lvc/abi-dumper/archive/0.99.19.tar.gz" ], "version": "0.99.19" }, { "downloads": [ "https://github.com/lvc/abi-dumper/archive/1.0.tar.gz" ], "version": "1.0" }, { "downloads": [ "https://github.com/lvc/abi-dumper/archive/1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ "https://github.com/lvc/abi-dumper/archive/1.2.tar.gz" ], "version": "1.2" } ] }, "abinit": { "alias": [], "categories": [], "dependencies": [ "atompaw", "blas", "c", "cuda", "cxx", "fftw-api", "fortran", "gmake", "gnuconfig", "hdf5", "hip", "hipblas", "hipfft", "hipsolver", "hsa-rocr-dev", "lapack", "libxc", "libxml2", "llvm-amdgpu", "mpi", "netcdf-c", "netcdf-fortran", "scalapack", "wannier90" ], "downloads": [ "https://forge.abinit.org/abinit-10.4.7.tar.gz", "https://forge.abinit.org/abinit-10.4.3.tar.gz", "https://forge.abinit.org/abinit-10.2.7.tar.gz", "https://forge.abinit.org/abinit-10.0.9.tar.gz", "https://forge.abinit.org/abinit-10.0.7.tar.gz", "https://forge.abinit.org/abinit-9.10.5.tar.gz", "https://forge.abinit.org/abinit-9.10.3.tar.gz", "https://forge.abinit.org/abinit-9.8.4.tar.gz", "https://forge.abinit.org/abinit-9.8.3.tar.gz", "https://forge.abinit.org/abinit-9.6.1.tar.gz", "https://forge.abinit.org/abinit-9.4.2.tar.gz", "https://forge.abinit.org/abinit-8.10.3.tar.gz", "https://forge.abinit.org/abinit-8.10.2.tar.gz", "https://forge.abinit.org/abinit-8.8.2.tar.gz", "https://forge.abinit.org/abinit-8.6.3.tar.gz", "https://forge.abinit.org/abinit-8.2.2.tar.gz" ], "homepages": [ "https://abinit.github.io/abinit_web/" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "downloadico" ], "name": "abinit", "patches": [ "rm_march_settings.patch when @:8", "rm_march_settings_v9.patch when @9", "fix_for_fujitsu.patch when @:8 %fj", "fix_for_fujitsu.v9.patch when @9: %fj", "fix_for_gcc15_stdbool.patch when @9:10.2.7 %gcc@15:" ], "summary": "ABINIT is a package whose main program allows one to find the total\nenergy, charge density and electronic structure of systems made of\nelectrons and nuclei (molecules and periodic solids) within Density\nFunctional Theory (DFT), using pseudopotentials and a planewave or\nwavelet basis. ABINIT also includes options to optimize the geometry\naccording to the DFT forces and stresses, or to perform molecular\ndynamics simulations using these forces, or to generate dynamical\nmatrices, Born effective charges, and dielectric tensors, based on\nDensity-Functional Perturbation Theory, and many more properties.\nExcited states can be computed within the Many-Body Perturbation Theory\n(the GW approximation and the Bethe-Salpeter equation), and Time-\nDependent Density Functional Theory (for molecules). In addition to the\nmain ABINIT code, different utility programs are provided.\n", "version": [ { "downloads": [ "https://forge.abinit.org/abinit-10.0.7.tar.gz" ], "version": "10.0.7" }, { "downloads": [ "https://forge.abinit.org/abinit-10.0.9.tar.gz" ], "version": "10.0.9" }, { "downloads": [ "https://forge.abinit.org/abinit-10.2.7.tar.gz" ], "version": "10.2.7" }, { "downloads": [ "https://forge.abinit.org/abinit-10.4.3.tar.gz" ], "version": "10.4.3" }, { "downloads": [ "https://forge.abinit.org/abinit-10.4.7.tar.gz" ], "version": "10.4.7" }, { "downloads": [ "https://forge.abinit.org/abinit-8.10.2.tar.gz" ], "version": "8.10.2" }, { "downloads": [ "https://forge.abinit.org/abinit-8.10.3.tar.gz" ], "version": "8.10.3" }, { "downloads": [ "https://forge.abinit.org/abinit-8.2.2.tar.gz" ], "version": "8.2.2" }, { "downloads": [ "https://forge.abinit.org/abinit-8.6.3.tar.gz" ], "version": "8.6.3" }, { "downloads": [ "https://forge.abinit.org/abinit-8.8.2.tar.gz" ], "version": "8.8.2" }, { "downloads": [ "https://forge.abinit.org/abinit-9.10.3.tar.gz" ], "version": "9.10.3" }, { "downloads": [ "https://forge.abinit.org/abinit-9.10.5.tar.gz" ], "version": "9.10.5" }, { "downloads": [ "https://forge.abinit.org/abinit-9.4.2.tar.gz" ], "version": "9.4.2" }, { "downloads": [ "https://forge.abinit.org/abinit-9.6.1.tar.gz" ], "version": "9.6.1" }, { "downloads": [ "https://forge.abinit.org/abinit-9.8.3.tar.gz" ], "version": "9.8.3" }, { "downloads": [ "https://forge.abinit.org/abinit-9.8.4.tar.gz" ], "version": "9.8.4" } ] }, "abseil-cpp": { "alias": [], "categories": [ "windows" ], "dependencies": [ "cmake", "cxx", "gmake", "googletest", "ninja" ], "downloads": [ "https://github.com/abseil/abseil-cpp/archive/refs/tags/20240722.0.tar.gz", "https://github.com/abseil/abseil-cpp/archive/refs/tags/20240116.2.tar.gz", "https://github.com/abseil/abseil-cpp/archive/refs/tags/20240116.1.tar.gz", "https://github.com/abseil/abseil-cpp/archive/refs/tags/20230802.1.tar.gz", "https://github.com/abseil/abseil-cpp/archive/refs/tags/20230125.3.tar.gz", "https://github.com/abseil/abseil-cpp/archive/refs/tags/20230125.2.tar.gz", "https://github.com/abseil/abseil-cpp/archive/refs/tags/20220623.0.tar.gz", "https://github.com/abseil/abseil-cpp/archive/refs/tags/20211102.0.tar.gz", "https://github.com/abseil/abseil-cpp/archive/refs/tags/20210324.2.tar.gz", "https://github.com/abseil/abseil-cpp/archive/refs/tags/20210324.1.tar.gz", "https://github.com/abseil/abseil-cpp/archive/refs/tags/20210324.0.tar.gz", "https://github.com/abseil/abseil-cpp/archive/refs/tags/20200923.3.tar.gz", "https://github.com/abseil/abseil-cpp/archive/refs/tags/20200923.2.tar.gz", "https://github.com/abseil/abseil-cpp/archive/refs/tags/20200923.1.tar.gz", "https://github.com/abseil/abseil-cpp/archive/refs/tags/20200225.2.tar.gz", "https://github.com/abseil/abseil-cpp/archive/refs/tags/20200225.1.tar.gz", "https://github.com/abseil/abseil-cpp/archive/refs/tags/20190808.tar.gz", "https://github.com/abseil/abseil-cpp/archive/refs/tags/20181200.tar.gz", "https://github.com/abseil/abseil-cpp/archive/refs/tags/20180600.tar.gz" ], "homepages": [ "https://abseil.io/" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "jcftang" ], "name": "abseil-cpp", "patches": [ "https://github.com/abseil/abseil-cpp/commit/779a3565ac6c5b69dd1ab9183e500a27633117d5.patch?full_index=1 when @20240116" ], "summary": "Abseil Common Libraries (C++)\n", "version": [ { "downloads": [ "https://github.com/abseil/abseil-cpp/archive/refs/tags/20180600.tar.gz" ], "version": "20180600" }, { "downloads": [ "https://github.com/abseil/abseil-cpp/archive/refs/tags/20181200.tar.gz" ], "version": "20181200" }, { "downloads": [ "https://github.com/abseil/abseil-cpp/archive/refs/tags/20190808.tar.gz" ], "version": "20190808" }, { "downloads": [ "https://github.com/abseil/abseil-cpp/archive/refs/tags/20200225.1.tar.gz" ], "version": "20200225.1" }, { "downloads": [ 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Note that this\npackage provides only the core libraries of ALPS.\n", "version": [ { "downloads": [ "https://github.com/ALPSCore/ALPSCore/archive/refs/tags/v2.3.2.tar.gz" ], "version": "2.3.2" } ] }, "alquimia": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "hdf5", "mpi", "ninja", "petsc", "pflotran" ], "downloads": [ "https://github.com/LBL-EESA/alquimia-dev.git" ], "homepages": [ "https://github.com/LBL-EESA/alquimia-dev" ], "licenses": [ "BSD-3-Clause-LBNL" ], "maintainers": [ "balay", "smolins" ], "name": "alquimia", "patches": [], "summary": "Alquimia is an interface that exposes the capabilities of mature\ngeochemistry codes such as CrunchFlow and PFLOTRAN\n", "version": [ { "repositories": [ { "commit": "b2c11b6cde321f4a495ef9fcf267cb4c7a9858a0", "type": "git", "url": "https://github.com/LBL-EESA/alquimia-dev.git" } ], "version": "1.0.10" }, { "repositories": [ { "commit": "2ee3bcfacc63f685864bcac2b6868b48ad235225", "type": "git", "url": "https://github.com/LBL-EESA/alquimia-dev.git" } ], "version": "1.0.9" }, { "repositories": [ { "commit": "211931c3e76b1ae7cdb48c46885b248412d6fe3d", "type": "git", "url": "https://github.com/LBL-EESA/alquimia-dev.git" } ], "version": "1.1.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/LBL-EESA/alquimia-dev.git" } ], "version": "master" } ] }, "alsa-lib": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "python" ], "downloads": [ "ftp://ftp.alsa-project.org/pub/lib/alsa-lib-1.2.3.2.tar.bz2", "ftp://ftp.alsa-project.org/pub/lib/alsa-lib-1.2.2.tar.bz2", "ftp://ftp.alsa-project.org/pub/lib/alsa-lib-1.1.4.1.tar.bz2" ], "homepages": [ "https://www.alsa-project.org" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "alsa-lib", "patches": [ "python.patch when @1.1.4:1.1.5+python" ], "summary": "The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI\nfunctionality to the Linux operating system. alsa-lib contains the user\nspace library that developers compile ALSA applications against.\n", "version": [ { "downloads": [ "ftp://ftp.alsa-project.org/pub/lib/alsa-lib-1.1.4.1.tar.bz2" ], "version": "1.1.4.1" }, { "downloads": [ "ftp://ftp.alsa-project.org/pub/lib/alsa-lib-1.2.2.tar.bz2" ], "version": "1.2.2" }, { "downloads": [ "ftp://ftp.alsa-project.org/pub/lib/alsa-lib-1.2.3.2.tar.bz2" ], "version": "1.2.3.2" } ] }, "aluminum": { "alias": [], "categories": [ "ecp", "radiuss" ], "dependencies": [ "aws-ofi-nccl", "aws-ofi-rccl", "c", "cmake", "cub", "cuda", "cxx", "gmake", "hip", "hipcub", "hsa-rocr-dev", "hwloc", "llvm-amdgpu", "mpi", "nccl", "ninja", "rccl", "roctracer-dev" ], "downloads": [ "https://github.com/LLNL/Aluminum/archive/vmaster.tar.gz", "https://github.com/LLNL/Aluminum/archive/v1.4.1.tar.gz", "https://github.com/LLNL/Aluminum/archive/v1.4.0.tar.gz", "https://github.com/LLNL/Aluminum/archive/v1.3.1.tar.gz", "https://github.com/LLNL/Aluminum/archive/v1.3.0.tar.gz", "https://github.com/LLNL/Aluminum/archive/v1.2.3.tar.gz", "https://github.com/LLNL/Aluminum.git" ], "homepages": [ "https://github.com/LLNL/Aluminum" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "benson31", "bvanessen" ], "name": "aluminum", "patches": [], "summary": "Aluminum provides a generic interface to high-performance communication\nlibraries, with a focus on allreduce algorithms. Blocking and non-\nblocking algorithms and GPU-aware algorithms are supported. Aluminum\nalso contains custom implementations of select algorithms to optimize\nfor certain situations.\n", "version": [ { "downloads": [ "https://github.com/LLNL/Aluminum/archive/v1.2.3.tar.gz" ], "version": "1.2.3" }, { "downloads": [ "https://github.com/LLNL/Aluminum/archive/v1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://github.com/LLNL/Aluminum/archive/v1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://github.com/LLNL/Aluminum/archive/v1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://github.com/LLNL/Aluminum/archive/v1.4.1.tar.gz" ], "version": "1.4.1" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/LLNL/Aluminum.git" } ], "version": "master" } ] }, "amber": { "alias": [], "categories": [], "dependencies": [ "bison", "bzip2", "cuda", "flex", "gmake", "mpi", "netcdf-fortran", "parallel-netcdf", "tcsh", "zlib-api" ], "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/Amber20.tar.bz2", "file:///home/runner/work/packages.spack.io/packages.spack.io/Amber18.tar.bz2" ], "homepages": [ "https://ambermd.org/" ], "licenses": [], "maintainers": [ "hseara" ], "name": "amber", "patches": [ "https://ambermd.org/bugfixes/20.0/update.1 when @20", "https://ambermd.org/bugfixes/20.0/update.2 when @20", "https://ambermd.org/bugfixes/20.0/update.3 when @20", "https://ambermd.org/bugfixes/20.0/update.4 when @20", "https://ambermd.org/bugfixes/20.0/update.5 when @20", "https://ambermd.org/bugfixes/20.0/update.6 when @20", "https://ambermd.org/bugfixes/20.0/update.7 when @20", "https://ambermd.org/bugfixes/20.0/update.8 when @20", "https://ambermd.org/bugfixes/20.0/update.9 when @20", "https://ambermd.org/bugfixes/20.0/update.10 when @20", "https://ambermd.org/bugfixes/20.0/update.11 when @20", "https://ambermd.org/bugfixes/20.0/update.12 when @20", "sebomd_fix.patch when @20", "https://ambermd.org/bugfixes/18.0/update.1 when @18", "https://ambermd.org/bugfixes/18.0/update.2 when @18", "https://ambermd.org/bugfixes/18.0/update.3 when @18", "https://ambermd.org/bugfixes/18.0/update.4 when @18", "https://ambermd.org/bugfixes/18.0/update.5 when @18", "https://ambermd.org/bugfixes/18.0/update.6 when @18", "https://ambermd.org/bugfixes/18.0/update.7 when @18", "https://ambermd.org/bugfixes/18.0/update.8 when @18", "https://ambermd.org/bugfixes/18.0/update.9 when @18", "https://ambermd.org/bugfixes/18.0/update.10 when @18", "https://ambermd.org/bugfixes/18.0/update.11 when @18", "https://ambermd.org/bugfixes/18.0/update.12 when @18", "https://ambermd.org/bugfixes/18.0/update.13 when @18", "https://ambermd.org/bugfixes/18.0/update.14 when @18", "https://ambermd.org/bugfixes/18.0/update.15 when @18", "https://ambermd.org/bugfixes/18.0/update.16 when @18", "https://ambermd.org/bugfixes/18.0/update.17 when @18", "ppc64le.patch when @18: target=ppc64le:", "aarch64.patch when @18: target=aarch64:", "nvhpc.patch when @18: %nvhpc", "nvhpc-boost.patch when @18: %nvhpc" ], "summary": "Amber is a suite of biomolecular simulation programs together with Amber\ntools. A manual download is required for Ambers. Spack will search your\ncurrent directory for the download files. Alternatively, add the files\nto a mirror so that Spack can find them. For instructions on how to set\nup a mirror, see https://spack.readthedocs.io/en/latest/mirrors.html\nNote: Only certain versions of ambertools are compatible with amber.\nOnly the latter version of ambertools for each amber version is\nsupported.\n", "version": [ { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/Amber18.tar.bz2" ], "version": "18" }, { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/Amber20.tar.bz2" ], "version": "20" } ] }, "ambertools": { "alias": [], "categories": [], "dependencies": [ "arpack-ng", "bison", "blas", "boost", "bzip2", "c", "cmake", "cxx", "fftw", "flex", "gmake", "lapack", "netcdf-c", "netcdf-fortran", "netlib-xblas", "ninja", "py-matplotlib", "py-numpy", "py-scipy", "py-setuptools", "python", "readline", "tcsh", "zlib" ], "downloads": [ "https://ambermd.org/downloads/AmberTools22jlmrcc.tar.bz2" ], "homepages": [ "https://ambermd.org/AmberTools.php" ], "licenses": [], "maintainers": [ "d-beltran" ], "name": "ambertools", "patches": [], "summary": "AmberTools is a free, useful standalone package and a prerequisite for\ninstalling Amber itself. The AmberTools suite is free of charge, and its\ncomponents are mostly released under the GNU General Public License\n(GPL). A few components are included that are in the public domain or\nwhich have other, open-source, licenses. The libsander and libpbsa\nlibraries use the LGPL license.\n", "version": [ { "downloads": [ "https://ambermd.org/downloads/AmberTools22jlmrcc.tar.bz2" ], "version": "22jlmrcc" } ] }, "amd-aocl": { "alias": [], "categories": [], "dependencies": [ "amdblis", "amdfftw", "amdlibflame", "amdlibm", "amdscalapack", "aocl-compression", "aocl-crypto", "aocl-da", "aocl-libmem", "aocl-sparse", "blas", "c", "cxx", "fortran", "lapack", "scalapack" ], "downloads": [], "homepages": [ "https://developer.amd.com/amd-aocl/" ], "licenses": [], "maintainers": [ "amd-toolchain-support" ], "name": "amd-aocl", "patches": [], "summary": "AMD Optimizing CPU Libraries (AOCL) - AOCL is a set of numerical\nlibraries tuned specifically for AMD EPYC processor family. They have a\nsimple interface to take advantage of the latest hardware innovations.\nThe tuned implementations of industry standard math libraries enable\nfast development of scientific and high performance computing projects\nLICENSING INFORMATION: By downloading, installing and using this\nsoftware, you agree to the terms and conditions of the AMD AOCL license\nagreement. You may obtain a copy of this license agreement from\nhttps://www.amd.com/en/developer/aocl/aocl-eula.html\nhttps://www.amd.com/en/developer/aocl/eula/aocl-4-1-eula.html\n", "version": [ { "downloads": [ [] ], "version": "2.2" }, { "downloads": [ [] ], "version": "3.0" }, { "downloads": [ [] ], "version": "3.1" }, { "downloads": [ [] ], "version": "3.2" }, { "downloads": [ [] ], "version": "4.0" }, { "downloads": [ [] ], "version": "4.1" }, { "downloads": [ [] ], "version": "4.2" }, { "downloads": [ [] ], "version": "5.0" }, { "downloads": [ [] ], "version": "5.1" } ] }, "amdblis": { "alias": [ { "alias_for": "amdblis+blas", "name": "blas" }, { "alias_for": "amdblis+cblas", "name": "blas" } ], "categories": [], "dependencies": [ "c", "cxx", "fortran", "gmake", "python" ], "downloads": [ "https://github.com/amd/blis/archive/5.1.tar.gz", "https://github.com/amd/blis/archive/5.0.tar.gz", "https://github.com/amd/blis/archive/4.2.tar.gz", "https://github.com/amd/blis/archive/4.1.tar.gz", "https://github.com/amd/blis/archive/4.0.tar.gz", "https://github.com/amd/blis/archive/3.2.tar.gz", "https://github.com/amd/blis/archive/3.1.tar.gz", "https://github.com/amd/blis/archive/3.0.1.tar.gz", "https://github.com/amd/blis/archive/3.0.tar.gz", "https://github.com/amd/blis/archive/2.2.tar.gz", "https://github.com/amd/blis" ], "homepages": [ "https://www.amd.com/en/developer/aocl/blis.html" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "amd-toolchain-support", "jeffhammond" ], "name": "amdblis", "patches": [], "summary": "AMD Optimized BLIS. BLIS is a portable software framework for\ninstantiating high-performance BLAS-like dense linear algebra libraries.\nThe framework was designed to isolate essential kernels of computation\nthat, when optimized, immediately enable optimized implementations of\nmost of its commonly used and computationally intensive operations.\nLICENSING INFORMATION: By downloading, installing and using this\nsoftware, you agree to the terms and conditions of the AMD AOCL-BLIS\nlicense agreement. You may obtain a copy of this license agreement from\nhttps://www.amd.com/en/developer/aocl/dense/eula/blas-4-2-eula.html\nhttps://www.amd.com/en/developer/aocl/dense/eula/blas-eula.html\n", "version": [ { "downloads": [ "https://github.com/amd/blis/archive/2.2.tar.gz" ], "version": "2.2" }, { "downloads": [ "https://github.com/amd/blis/archive/3.0.tar.gz" ], "version": "3.0" }, { "downloads": [ "https://github.com/amd/blis/archive/3.0.1.tar.gz" ], "version": "3.0.1" }, { "downloads": [ "https://github.com/amd/blis/archive/3.1.tar.gz" ], "version": "3.1" }, { "downloads": [ "https://github.com/amd/blis/archive/3.2.tar.gz" ], "version": "3.2" }, { "downloads": [ "https://github.com/amd/blis/archive/4.0.tar.gz" ], "version": "4.0" }, { "downloads": [ "https://github.com/amd/blis/archive/4.1.tar.gz" ], "version": "4.1" }, { "downloads": [ "https://github.com/amd/blis/archive/4.2.tar.gz" ], "version": "4.2" }, { "downloads": [ "https://github.com/amd/blis/archive/5.0.tar.gz" ], "version": "5.0" }, { "downloads": [ "https://github.com/amd/blis/archive/5.1.tar.gz" ], "version": "5.1" } ] }, "amdfftw": { "alias": [ { "alias_for": "amdfftw", "name": "fftw-api" } ], "categories": [], "dependencies": [ "c", "fortran", "gmake", "gnuconfig", "llvm-openmp", "mpi", "texinfo" ], "downloads": [ "https://github.com/amd/amd-fftw/archive/5.1.tar.gz", "https://github.com/amd/amd-fftw/archive/5.0.tar.gz", "https://github.com/amd/amd-fftw/archive/4.2.tar.gz", "https://github.com/amd/amd-fftw/archive/4.1.tar.gz", "https://github.com/amd/amd-fftw/archive/4.0.tar.gz", "https://github.com/amd/amd-fftw/archive/3.2.tar.gz", "https://github.com/amd/amd-fftw/archive/3.1.tar.gz", "https://github.com/amd/amd-fftw/archive/3.0.1.tar.gz", "https://github.com/amd/amd-fftw/archive/3.0.tar.gz", "https://github.com/amd/amd-fftw/archive/2.2.tar.gz", "https://github.com/amd/amd-fftw.git" ], "homepages": [ "https://www.amd.com/en/developer/aocl/fftw.html" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [ "amd-toolchain-support" ], "name": "amdfftw", "patches": [], "summary": "FFTW (AMD Optimized version) is a comprehensive collection of fast C\nroutines for computing the Discrete Fourier Transform (DFT) and various\nspecial cases thereof. It is an open-source implementation of the Fast\nFourier transform algorithm. It can compute transforms of real and\ncomplex-values arrays of arbitrary size and dimension. AMD Optimized\nFFTW is the optimized FFTW implementation targeted for AMD CPUs. For\nsingle precision build, please use precision value as float. Example :\nspack install amdfftw precision=float LICENSING INFORMATION: By\ndownloading, installing and using this software, you agree to the terms\nand conditions of the AMD AOCL-FFTW license agreement. You may obtain a\ncopy of this license agreement from\nhttps://www.amd.com/en/developer/aocl/fftw/eula/fftw-\nlibraries-4-2-eula.html\nhttps://www.amd.com/en/developer/aocl/fftw/eula/fftw-libraries-eula.html\n", "version": [ { "downloads": [ "https://github.com/amd/amd-fftw/archive/2.2.tar.gz" ], "version": "2.2" }, { "downloads": [ "https://github.com/amd/amd-fftw/archive/3.0.tar.gz" ], "version": "3.0" }, { "downloads": [ "https://github.com/amd/amd-fftw/archive/3.0.1.tar.gz" ], "version": "3.0.1" }, { "downloads": [ "https://github.com/amd/amd-fftw/archive/3.1.tar.gz" ], "version": "3.1" }, { "downloads": [ "https://github.com/amd/amd-fftw/archive/3.2.tar.gz" ], "version": "3.2" }, { "downloads": [ "https://github.com/amd/amd-fftw/archive/4.0.tar.gz" ], "version": "4.0" }, { "downloads": [ "https://github.com/amd/amd-fftw/archive/4.1.tar.gz" ], "version": "4.1" }, { "downloads": [ "https://github.com/amd/amd-fftw/archive/4.2.tar.gz" ], "version": "4.2" }, { "downloads": [ "https://github.com/amd/amd-fftw/archive/5.0.tar.gz" ], "version": "5.0" }, { "downloads": [ "https://github.com/amd/amd-fftw/archive/5.1.tar.gz" ], "version": "5.1" } ] }, "amdlibflame": { "alias": [ { "alias_for": "amdlibflame+lapack2flame", "name": "lapack" }, { "alias_for": "amdlibflame@2:", "name": "flame" } ], "categories": [], "dependencies": [ "aocl-utils", "blas", "c", "cmake", "cxx", "fortran", "gmake", "gnuconfig", "ninja", "python" ], "downloads": [ "https://github.com/amd/libflame/archive/5.1.tar.gz", "https://github.com/amd/libflame/archive/5.0.tar.gz", "https://github.com/amd/libflame/archive/4.2.tar.gz", "https://github.com/amd/libflame/archive/4.1.tar.gz", "https://github.com/amd/libflame/archive/4.0.tar.gz", "https://github.com/amd/libflame/archive/3.2.tar.gz", "https://github.com/amd/libflame/archive/3.1.tar.gz", "https://github.com/amd/libflame/archive/3.0.1.tar.gz", "https://github.com/amd/libflame/archive/3.0.tar.gz", "https://github.com/amd/libflame/archive/2.2.tar.gz", "https://github.com/amd/amdlibflame" ], "homepages": [ "https://www.amd.com/en/developer/aocl/blis.html#libflame" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "amd-toolchain-support" ], "name": "amdlibflame", "patches": [ "Makefile_5.1.0.patch when @5.1.0", "Makefile_5.2.0.patch when @5.2.0", "Makefile_5.2.0_darwin.patch when @5.2.0", "aocc-2.2.0.patch when @:2", "cray-compiler-wrapper.patch when @:3.0.0", "supermat.patch when @4.0:4.1", "libflame-pkgconfig.patch when @4.2" ], "summary": "libFLAME (AMD Optimized version) is a portable library for dense matrix\ncomputations, providing much of the functionality present in Linear\nAlgebra Package (LAPACK). It includes a compatibility layer, FLAPACK,\nwhich includes complete LAPACK implementation. The library provides\nscientific and numerical computing communities with a modern, high-\nperformance dense linear algebra library that is extensible, easy to\nuse, and available under an open source license. libFLAME is a C-only\nimplementation and does not depend on any external FORTRAN libraries\nincluding LAPACK. There is an optional backward compatibility layer,\nlapack2flame that maps LAPACK routine invocations to their corresponding\nnative C implementations in libFLAME. This allows legacy applications to\nstart taking advantage of libFLAME with virtually no changes to their\nsource code. In combination with BLIS library which includes\noptimizations for the AMD EPYC processor family, libFLAME enables\nrunning high performing LAPACK functionalities on AMD platform.\nLICENSING INFORMATION: By downloading, installing and using this\nsoftware, you agree to the terms and conditions of the AMD AOCL-libFLAME\nlicense agreement. You may obtain a copy of this license agreement from\nhttps://www.amd.com/en/developer/aocl/dense/eula-\nlibflame/libflame-4-2-eula.html\nhttps://www.amd.com/en/developer/aocl/dense/eula-libflame/libflame-\neula.html\n", "version": [ { "downloads": [ "https://github.com/amd/libflame/archive/2.2.tar.gz" ], "version": "2.2" }, { "downloads": [ "https://github.com/amd/libflame/archive/3.0.tar.gz" ], "version": "3.0" }, { "downloads": [ "https://github.com/amd/libflame/archive/3.0.1.tar.gz" ], "version": "3.0.1" }, { "downloads": [ "https://github.com/amd/libflame/archive/3.1.tar.gz" ], "version": "3.1" }, { "downloads": [ "https://github.com/amd/libflame/archive/3.2.tar.gz" ], "version": "3.2" }, { "downloads": [ "https://github.com/amd/libflame/archive/4.0.tar.gz" ], "version": "4.0" }, { "downloads": [ "https://github.com/amd/libflame/archive/4.1.tar.gz" ], "version": "4.1" }, { "downloads": [ "https://github.com/amd/libflame/archive/4.2.tar.gz" ], "version": "4.2" }, { "downloads": [ "https://github.com/amd/libflame/archive/5.0.tar.gz" ], "version": "5.0" }, { "downloads": [ "https://github.com/amd/libflame/archive/5.1.tar.gz" ], "version": "5.1" } ] }, "amdlibm": { "alias": [], "categories": [], "dependencies": [ "aocl-utils", "c", "cmake", "cxx", "gmake", "mpfr", "ninja", "python", "scons" ], "downloads": [ "https://github.com/amd/aocl-libm-ose/archive/5.1.tar.gz", "https://github.com/amd/aocl-libm-ose/archive/5.0.tar.gz", "https://github.com/amd/aocl-libm-ose/archive/4.2.tar.gz", "https://github.com/amd/aocl-libm-ose/archive/4.1.tar.gz", "https://github.com/amd/aocl-libm-ose/archive/4.0.tar.gz", "https://github.com/amd/aocl-libm-ose/archive/3.2.tar.gz", "https://github.com/amd/aocl-libm-ose/archive/3.1.tar.gz", "https://github.com/amd/aocl-libm-ose/archive/3.0.tar.gz", "https://github.com/amd/aocl-libm-ose/archive/2.2.tar.gz", "https://github.com/amd/aocl-libm-ose.git" ], "homepages": [ "https://www.amd.com/en/developer/aocl/libm.html" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "amd-toolchain-support" ], "name": "amdlibm", "patches": [ "0001-libm-ose-Scripts-cleanup-pyc-files.patch when @2.2", "0002-libm-ose-prevent-log-v3.c-from-building.patch when @2.2", "libm-ose-SconsSpack.patch when @3.1:4.2", "libm-ose-SconsSpack-5.patch when @5.0:" ], "summary": "AMD LibM is a software library containing a collection of basic math\nfunctions optimized for x86-64 processor-based machines. It provides\nmany routines from the list of standard C99 math functions. Applications\ncan link into AMD LibM library and invoke math functions instead of\ncompiler's math functions for better accuracy and performance. LICENSING\nINFORMATION: By downloading, installing and using this software, you\nagree to the terms and conditions of the AMD AOCL-FFTW license\nagreement. You may obtain a copy of this license agreement from\nhttps://www.amd.com/en/developer/aocl/libm/eula/libm-4-2-eula.html\nhttps://www.amd.com/en/developer/aocl/libm/libm-eula.html\n", "version": [ { "repositories": [ { "commit": "4033e022da428125747e118ccd6fdd9cee21c470", "type": "git", "url": "https://github.com/amd/aocl-libm-ose.git" } ], "version": "2.2" }, { "downloads": [ "https://github.com/amd/aocl-libm-ose/archive/3.0.tar.gz" ], "version": "3.0" }, { "downloads": [ "https://github.com/amd/aocl-libm-ose/archive/3.1.tar.gz" ], "version": "3.1" }, { "downloads": [ "https://github.com/amd/aocl-libm-ose/archive/3.2.tar.gz" ], "version": "3.2" }, { "downloads": [ "https://github.com/amd/aocl-libm-ose/archive/4.0.tar.gz" ], "version": "4.0" }, { "downloads": [ "https://github.com/amd/aocl-libm-ose/archive/4.1.tar.gz" ], "version": "4.1" }, { "downloads": [ "https://github.com/amd/aocl-libm-ose/archive/4.2.tar.gz" ], "version": "4.2" }, { "downloads": [ "https://github.com/amd/aocl-libm-ose/archive/5.0.tar.gz" ], "version": "5.0" }, { "downloads": [ "https://github.com/amd/aocl-libm-ose/archive/5.1.tar.gz" ], "version": "5.1" } ] }, "amdscalapack": { "alias": [ { "alias_for": "amdscalapack", "name": "scalapack" } ], "categories": [ "e4s" ], "dependencies": [ "amdblis", "amdlibflame", "blas", "c", "cmake", "fortran", "gmake", "lapack", "mpi", "ninja" ], "downloads": [ "https://github.com/amd/aocl-scalapack" ], "homepages": [ "https://www.amd.com/en/developer/aocl/scalapack.html" ], "licenses": [ "BSD-3-Clause-Open-MPI" ], "maintainers": [ "amd-toolchain-support" ], "name": "amdscalapack", "patches": [ "cmake_fortran_mangle.patch when @2.0.2:2.0", "mpi2-compatibility.patch when @2.0.2:2.0", "int_overflow.patch when @2.0.0:2.1.0", "gcc10-compatibility.patch when @2.0.0:2.2.0", "https://github.com/Reference-ScaLAPACK/scalapack/commit/d4d0066c041cf19a23f8b3aa62fbcf5f0a33c166.patch?full_index=1 when @2.2.0", "fix-build-macos.patch when @2.2.0", "clang-hollerith.patch when @=4.0 %clang@16:" ], "summary": " ScaLAPACK is a library of high-performance linear algebra routines for\nparallel distributed memory machines. It depends on external libraries\nincluding BLAS and LAPACK for Linear Algebra computations. AMD's\noptimized version of ScaLAPACK enables using BLIS and LibFLAME library\nthat have optimized dense matrix functions and solvers for AMD EPYC\nprocessor family CPUs. LICENSING INFORMATION: By downloading, installing\nand using this software, you agree to the terms and conditions of the\nAMD AOCL-ScaLAPACK license agreement. You may obtain a copy of this\nlicense agreement from\nhttps://www.amd.com/en/developer/aocl/scalapack/eula/scalapack-\nlibraries-4-2-eula.html\nhttps://www.amd.com/en/developer/aocl/scalapack/eula/scalapack-\nlibraries-eula.html\n", "version": [ { "downloads": [ "https://github.com/amd/scalapack/archive/2.2.tar.gz" ], "version": "2.2" }, { "downloads": [ "https://github.com/amd/scalapack/archive/3.0.tar.gz" ], "version": "3.0" }, { "downloads": [ "https://github.com/amd/aocl-scalapack/archive/3.1.tar.gz" ], "version": "3.1" }, { "downloads": [ "https://github.com/amd/aocl-scalapack/archive/3.2.tar.gz" ], "version": "3.2" }, { "downloads": [ "https://github.com/amd/aocl-scalapack/archive/4.0.tar.gz" ], "version": "4.0" }, { "downloads": [ "https://github.com/amd/aocl-scalapack/archive/4.1.tar.gz" ], "version": "4.1" }, { "downloads": [ "https://github.com/amd/aocl-scalapack/archive/4.2.tar.gz" ], "version": "4.2" }, { "downloads": [ "https://github.com/amd/aocl-scalapack/archive/5.0.tar.gz" ], "version": "5.0" }, { "downloads": [ "https://github.com/amd/aocl-scalapack/archive/5.1.tar.gz" ], "version": "5.1" } ] }, "amdsmi": { "alias": [], "categories": [ "rocm", "detectable" ], "dependencies": [ "c", "cmake", "cxx", "gmake", "libdrm", "ninja", "pkgconfig", "py-pyyaml", "py-virtualenv", "python" ], "downloads": [ "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-7.0.2.tar.gz", "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-7.0.0.tar.gz", "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.4.3.tar.gz", "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.4.2.tar.gz", "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.4.1.tar.gz", "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.4.0.tar.gz", "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.3.3.tar.gz", "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.3.2.tar.gz", "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.3.1.tar.gz", "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.3.0.tar.gz", "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.2.4.tar.gz", "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.2.1.tar.gz", "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.2.0.tar.gz", "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.1.2.tar.gz", "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.1.1.tar.gz", "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.1.0.tar.gz", "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.0.2.tar.gz", "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.0.0.tar.gz", "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-5.7.0.tar.gz", "https://github.com/ROCm/amdsmi.git" ], "homepages": [ "https://github.com/ROCm/amdsmi" ], "licenses": [ "MIT" ], "maintainers": [ "afzpatel", "renjithravindrankannath", "srekolam" ], "name": "amdsmi", "patches": [ "https://github.com/ROCm/amdsmi/commit/2858e51b4e8ff124ed67e23e0cd131e8b2140fae.patch?full_index=1 when @6.2" ], "summary": "The AMD System Management Interface Library, or AMD SMI library, is a C\nlibrary for Linux that provides a user space interface for applications\nto monitor and control AMD device.\n", "version": [ { "downloads": [ "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-5.7.0.tar.gz" ], "version": "5.7.0" }, { "downloads": [ "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.0.0.tar.gz" ], "version": "6.0.0" }, { "downloads": [ "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.0.2.tar.gz" ], "version": "6.0.2" }, { "downloads": [ "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.1.0.tar.gz" ], "version": "6.1.0" }, { "downloads": [ "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.1.1.tar.gz" ], "version": "6.1.1" }, { "downloads": [ "https://github.com/ROCm/amdsmi/archive/refs/tags/rocm-6.1.2.tar.gz" ], "version": "6.1.2" }, { 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"https://repo.anaconda.com/archive/Anaconda3-2018.12-Linux-x86_64.sh" ], "version": "2018.12" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-2019.03-Linux-x86_64.sh" ], "version": "2019.03" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-2019.07-Linux-x86_64.sh" ], "version": "2019.07" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-2019.10-Linux-x86_64.sh" ], "version": "2019.10" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-2020.02-Linux-x86_64.sh" ], "version": "2020.02" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-2020.07-Linux-x86_64.sh" ], "version": "2020.07" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-2020.11-Linux-x86_64.sh" ], "version": "2020.11" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-2021.05-Linux-x86_64.sh" ], "version": "2021.05" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-2021.11-Linux-x86_64.sh" ], "version": "2021.11" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-2022.05-Linux-x86_64.sh" ], "version": "2022.05" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-2022.10-Linux-x86_64.sh" ], "version": "2022.10" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-2023.07-2-Linux-x86_64.sh" ], "version": "2023.07-2" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-2023.09-0-Linux-x86_64.sh" ], "version": "2023.09-0" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-4.0.0-Linux-x86_64.sh" ], "version": "4.0.0" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-4.1.0-Linux-x86_64.sh" ], "version": "4.1.0" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-4.1.1-Linux-x86_64.sh" ], "version": "4.1.1" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-4.2.0-Linux-x86_64.sh" ], "version": "4.2.0" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-4.3.0-Linux-x86_64.sh" ], "version": "4.3.0" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-4.3.1-Linux-x86_64.sh" ], "version": "4.3.1" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-4.4.0-Linux-x86_64.sh" ], "version": "4.4.0" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-5.0.0-Linux-x86_64.sh" ], "version": "5.0.0" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-5.0.0.1-Linux-x86_64.sh" ], "version": "5.0.0.1" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-5.0.1-Linux-x86_64.sh" ], "version": "5.0.1" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-5.1.0-Linux-x86_64.sh" ], "version": "5.1.0" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-5.2.0-Linux-x86_64.sh" ], "version": "5.2.0" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-5.3.0-Linux-x86_64.sh" ], "version": "5.3.0" }, { "downloads": [ "https://repo.anaconda.com/archive/Anaconda3-5.3.1-Linux-x86_64.sh" ], "version": "5.3.1" } ] }, "andi": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "cxx", "gmake", "gnuconfig", "gsl", "libdivsufsort", "libtool", "m4", "pkgconfig" ], "downloads": [ "https://github.com/EvolBioInf/andi/archive/v0.14.tar.gz", "https://github.com/EvolBioInf/andi/archive/v0.10.tar.gz" ], "homepages": [ "https://github.com/EvolBioInf/andi" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [ "snehring" ], "name": "andi", "patches": [], "summary": "andi is used for for estimating the evolutionary distance between\nclosely related genomes.\n", "version": [ { "downloads": [ "https://github.com/EvolBioInf/andi/archive/v0.10.tar.gz" ], "version": "0.10" }, { "downloads": [ "https://github.com/EvolBioInf/andi/archive/v0.14.tar.gz" ], "version": "0.14" } ] }, "angsd": { "alias": [], "categories": [], "dependencies": [ "c", "curl", "cxx", "gmake", "htslib", "r", "xz", "zlib-api" ], "downloads": [ "https://github.com/ANGSD/angsd/archive/0.940.tar.gz", "https://github.com/ANGSD/angsd/archive/0.935.tar.gz", "https://github.com/ANGSD/angsd/archive/0.933.tar.gz", "https://github.com/ANGSD/angsd/archive/0.921.tar.gz", "https://github.com/ANGSD/angsd/archive/0.919.tar.gz" ], "homepages": [ "https://github.com/ANGSD/angsd" ], "licenses": [], "maintainers": [], "name": "angsd", "patches": [], "summary": "Angsd is a program for analysing NGS data. The software can handle a\nnumber of different input types from mapped reads to imputed genotype\nprobabilities. Most methods take genotype uncertainty into account\ninstead of basing the analysis on called genotypes. This is especially\nuseful for low and medium depth data.\n", "version": [ { "downloads": [ "https://github.com/ANGSD/angsd/archive/0.919.tar.gz" ], "version": "0.919" }, { "downloads": [ "https://github.com/ANGSD/angsd/archive/0.921.tar.gz" ], "version": "0.921" }, { "downloads": [ "https://github.com/ANGSD/angsd/archive/0.933.tar.gz" ], "version": "0.933" }, { "downloads": [ "https://github.com/ANGSD/angsd/archive/0.935.tar.gz" ], "version": "0.935" }, { "downloads": [ "https://github.com/ANGSD/angsd/archive/0.940.tar.gz" ], "version": "0.940" } ] }, "anicalculator": { "alias": [], "categories": [], "dependencies": [ "perl" ], "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/ANIcalculator_v1.tgz" ], "homepages": [ "https://ani.jgi.doe.gov/html/download.php?" ], "licenses": [], "maintainers": [], "name": "anicalculator", "patches": [], "summary": "This tool will calculate the bidirectional average nucleotide identity\n(gANI) and Alignment Fraction (AF) between two genomes. Note: A manual\ndownload is required for ANIcalculator. Spack will search your current\ndirectory for the download file. Alternatively, add this file to a\nmirror so that Spack can find it. For instructions on how to set up a\nmirror, see https://spack.readthedocs.io/en/latest/mirrors.html\n", "version": [ { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/ANIcalculator_v1.tgz" ], "version": "1" } ] }, "ant": { "alias": [], "categories": [], "dependencies": [ "java" ], "downloads": [ "https://archive.apache.org/dist/ant/source/apache-ant-1.10.14-src.tar.gz", "https://archive.apache.org/dist/ant/source/apache-ant-1.10.13-src.tar.gz" ], "homepages": [ "https://ant.apache.org/" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "ant", "patches": [], "summary": "Apache Ant is a Java library and command-line tool whose mission is to\ndrive processes described in build files as targets and extension points\ndependent upon each other\n", "version": [ { "downloads": [ "https://archive.apache.org/dist/ant/source/apache-ant-1.10.13-src.tar.gz" ], "version": "1.10.13" }, { "downloads": [ "https://archive.apache.org/dist/ant/source/apache-ant-1.10.14-src.tar.gz" ], "version": "1.10.14" } ] }, "antimony": { "alias": [], "categories": [], "dependencies": [ "cmake", "gmake", "ninja", "python", "qt", "sbml", "swig" ], "downloads": [ "https://downloads.sourceforge.net/project/antimony/Antimony source/2.8/antimony_src_v2.8.tar.gz", "https://downloads.sourceforge.net/project/antimony/Antimony source/2.7/antimony_src_v2.7.tar.gz", "https://downloads.sourceforge.net/project/antimony/Antimony source/2.6/antimony_src_v2.6.tar.gz", "https://downloads.sourceforge.net/project/antimony/Antimony source/2.5/antimony_src_v2.5.tar.gz", "https://downloads.sourceforge.net/project/antimony/Antimony source/2.4/antimony_src_v2.4.tar.gz", "https://downloads.sourceforge.net/project/antimony/Antimony source/2.2/antimony_src_v2.2.tar.gz", "https://downloads.sourceforge.net/project/antimony/Antimony source/2.0/antimony_src_v2.0.tar.gz" ], "homepages": [ "https://antimony.sourceforge.net/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "rblake-llnl" ], "name": "antimony", "patches": [], "summary": "Human readable language for modifying sbml\n", "version": [ { "downloads": [ "https://downloads.sourceforge.net/project/antimony/Antimony source/2.0/antimony_src_v2.0.tar.gz" ], "version": "2.0" }, { "downloads": [ "https://downloads.sourceforge.net/project/antimony/Antimony source/2.2/antimony_src_v2.2.tar.gz" ], "version": "2.2" }, { "downloads": [ "https://downloads.sourceforge.net/project/antimony/Antimony source/2.4/antimony_src_v2.4.tar.gz" ], "version": "2.4" }, { "downloads": [ "https://downloads.sourceforge.net/project/antimony/Antimony source/2.5/antimony_src_v2.5.tar.gz" ], "version": "2.5" }, { "downloads": [ "https://downloads.sourceforge.net/project/antimony/Antimony source/2.6/antimony_src_v2.6.tar.gz" ], "version": "2.6" }, { "downloads": [ "https://downloads.sourceforge.net/project/antimony/Antimony source/2.7/antimony_src_v2.7.tar.gz" ], "version": "2.7" }, { "downloads": [ "https://downloads.sourceforge.net/project/antimony/Antimony source/2.8/antimony_src_v2.8.tar.gz" ], "version": "2.8" } ] }, "antlr": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gnuconfig", "java", "python", "python-venv" ], "downloads": [ "https://www.antlr2.org/download/antlr-2.7.7.tar.gz" ], "homepages": [ "https://www.antlr2.org/" ], "licenses": [ "ANTLR-PD" ], "maintainers": [], "name": "antlr", "patches": [ "gcc.patch" ], "summary": "ANTLR (ANother Tool for Language Recognition) is a powerful parser\ngenerator for reading, processing, executing, or translating structured\ntext or binary files. It's widely used to build languages, tools, and\nframeworks. From a grammar, ANTLR generates a parser that can build and\nwalk parse trees.\n", "version": [ { "downloads": [ "https://www.antlr2.org/download/antlr-2.7.7.tar.gz" ], "version": "2.7.7" } ] }, "antlr4-complete": { "alias": [], "categories": [], "dependencies": [ "java" ], "downloads": [ "https://www.antlr.org/download/antlr-4.13.1-complete.jar", "https://www.antlr.org/download/antlr-4.12.0-complete.jar", "https://www.antlr.org/download/antlr-4.11.1-complete.jar", "https://www.antlr.org/download/antlr-4.10.1-complete.jar", "https://www.antlr.org/download/antlr-4.9.3-complete.jar", "https://www.antlr.org/download/antlr-4.7.2-complete.jar" ], "homepages": [ "https://www.antlr.org" ], "licenses": [], "maintainers": [], "name": "antlr4-complete", "patches": [], "summary": " This package provides complete ANTLR tool, Java runtime and ST, which\nlets you run the tool and the generated code by version 4 of ANTLR\n(ANother Tool for Language Recognition).\n", "version": [ { "downloads": [ "https://www.antlr.org/download/antlr-4.10.1-complete.jar" ], "version": "4.10.1" }, { "downloads": [ "https://www.antlr.org/download/antlr-4.11.1-complete.jar" ], "version": "4.11.1" }, { "downloads": [ "https://www.antlr.org/download/antlr-4.12.0-complete.jar" ], "version": "4.12.0" }, { "downloads": [ "https://www.antlr.org/download/antlr-4.13.1-complete.jar" ], "version": "4.13.1" }, { "downloads": [ "https://www.antlr.org/download/antlr-4.7.2-complete.jar" ], "version": "4.7.2" }, { "downloads": [ "https://www.antlr.org/download/antlr-4.9.3-complete.jar" ], "version": "4.9.3" } ] }, "antlr4-cpp-runtime": { "alias": [], "categories": [], "dependencies": [ "cmake", "git", "gmake", "ninja", "pkgconfig", "uuid" ], "downloads": [ "https://www.antlr.org/download/antlr4-cpp-runtime-4.13.1-source.zip", "https://www.antlr.org/download/antlr4-cpp-runtime-4.12.0-source.zip", "https://www.antlr.org/download/antlr4-cpp-runtime-4.11.1-source.zip", "https://www.antlr.org/download/antlr4-cpp-runtime-4.10.1-source.zip", "https://www.antlr.org/download/antlr4-cpp-runtime-4.9.3-source.zip", "https://www.antlr.org/download/antlr4-cpp-runtime-4.7.2-source.zip" ], "homepages": [ "https://www.antlr.org" ], "licenses": [], "maintainers": [], "name": "antlr4-cpp-runtime", "patches": [], "summary": " This package provides runtime libraries required to use parsers\ngenerated for the Cpp language by version 4 of ANTLR (ANother Tool for\nLanguage Recognition).\n", "version": [ { "downloads": [ "https://www.antlr.org/download/antlr4-cpp-runtime-4.10.1-source.zip" ], "version": "4.10.1" }, { "downloads": [ "https://www.antlr.org/download/antlr4-cpp-runtime-4.11.1-source.zip" ], "version": "4.11.1" }, { "downloads": [ "https://www.antlr.org/download/antlr4-cpp-runtime-4.12.0-source.zip" ], "version": "4.12.0" }, { "downloads": [ "https://www.antlr.org/download/antlr4-cpp-runtime-4.13.1-source.zip" ], "version": "4.13.1" }, { "downloads": [ "https://www.antlr.org/download/antlr4-cpp-runtime-4.7.2-source.zip" ], "version": "4.7.2" }, { "downloads": [ "https://www.antlr.org/download/antlr4-cpp-runtime-4.9.3-source.zip" ], "version": "4.9.3" } ] }, "ants": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja", "zlib-api" ], "downloads": [ "https://github.com/ANTsX/ANTs/archive/v2.5.1.tar.gz", "https://github.com/ANTsX/ANTs/archive/v2.4.3.tar.gz", "https://github.com/ANTsX/ANTs/archive/v2.4.0.tar.gz", "https://github.com/ANTsX/ANTs/archive/v2.3.5.tar.gz", "https://github.com/ANTsX/ANTs/archive/v2.2.0.tar.gz", "https://github.com/ANTsX/ANTs.git" ], "homepages": [ "https://stnava.github.io/ANTs/" ], "licenses": [], "maintainers": [], "name": "ants", "patches": [], "summary": "ANTs extracts information from complex datasets that include imaging.\nPaired with ANTsR (answer), ANTs is useful for managing, interpreting\nand visualizing multidimensional data. ANTs is popularly considered a\nstate-of-the-art medical image registration and segmentation toolkit.\nANTs depends on the Insight ToolKit (ITK), a widely used medical image\nprocessing library to which ANTs developers contribute.\n", "version": [ { "downloads": [ "https://github.com/ANTsX/ANTs/archive/v2.2.0.tar.gz" ], "version": "2.2.0" }, { "downloads": [ "https://github.com/ANTsX/ANTs/archive/v2.3.5.tar.gz" ], "version": "2.3.5" }, { "downloads": [ "https://github.com/ANTsX/ANTs/archive/v2.4.0.tar.gz" ], "version": "2.4.0" }, { "downloads": [ "https://github.com/ANTsX/ANTs/archive/v2.4.3.tar.gz" ], "version": "2.4.3" }, { "downloads": [ "https://github.com/ANTsX/ANTs/archive/v2.5.1.tar.gz" ], "version": "2.5.1" } ] }, "any2fasta": { "alias": [], "categories": [], "dependencies": [ "perl" ], "downloads": [ "https://github.com/tseemann/any2fasta/archive/refs/tags/v0.4.2.tar.gz", "https://github.com/tseemann/any2fasta/archive/refs/tags/v0.2.3.tar.gz", "https://github.com/tseemann/any2fasta/archive/refs/tags/v0.1.2.tar.gz" ], "homepages": [ "https://github.com/tseemann/any2fasta" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "any2fasta", "patches": [], "summary": "any2fasta: Convert various sequence formats to FASTA\n", "version": [ { "downloads": [ "https://github.com/tseemann/any2fasta/archive/refs/tags/v0.1.2.tar.gz" ], "version": "0.1.2" }, { "downloads": [ "https://github.com/tseemann/any2fasta/archive/refs/tags/v0.2.3.tar.gz" ], "version": "0.2.3" }, { "downloads": [ "https://github.com/tseemann/any2fasta/archive/refs/tags/v0.4.2.tar.gz" ], "version": "0.4.2" } ] }, "aocc": { "alias": [ { "alias_for": "aocc", "name": "c" }, { "alias_for": "aocc", "name": "cxx" }, { "alias_for": "aocc", "name": "fortran" } ], "categories": [ "compiler", "detectable" ], "dependencies": [ "c", "cxx", "fortran", "libtool", "libxml2", "ncurses", "patchelf", "zlib-api" ], "downloads": [ "https://download.amd.com/developer/eula/aocc/aocc-5-0/aocc-compiler-5.0.0.tar", "https://download.amd.com/developer/eula/aocc/aocc-4-2/aocc-compiler-4.2.0.tar", "https://download.amd.com/developer/eula/aocc/aocc-4-1/aocc-compiler-4.1.0.tar", "https://download.amd.com/developer/eula/aocc-compiler/aocc-compiler-4.0.0.tar", "https://download.amd.com/developer/eula/aocc-compiler/aocc-compiler-3.2.0.tar" ], "homepages": [ "https://www.amd.com/en/developer/aocc.html" ], "licenses": [], "maintainers": [ "amd-toolchain-support" ], "name": "aocc", "patches": [], "summary": " The AOCC compiler system is a high performance, production quality code\ngeneration tool. The AOCC environment provides various options to\ndevelopers when building and optimizing C, C++, and Fortran applications\ntargeting 32-bit and 64-bit Linux platforms. The AOCC compiler system\noffers a high level of advanced optimizations, multi-threading and\nprocessor support that includes global optimization, vectorization,\ninter-procedural analyses, loop transformations, and code generation.\nAMD also provides highly optimized libraries, which extract the optimal\nperformance from each x86 processor core when utilized. The AOCC\nCompiler Suite simplifies and accelerates development and tuning for x86\napplications. Installation requires acceptance of the EULA by setting\nthe +license-agreed variant. https://www.amd.com/en/developer/aocc/aocc-\ncompiler/eula.html Example for installation: 'spack install aocc\n+license-agreed'\n", "version": [ { "downloads": [ "https://download.amd.com/developer/eula/aocc-compiler/aocc-compiler-3.2.0.tar" ], "version": "3.2.0" }, { "downloads": [ "https://download.amd.com/developer/eula/aocc-compiler/aocc-compiler-4.0.0.tar" ], "version": "4.0.0" }, { "downloads": [ "https://download.amd.com/developer/eula/aocc/aocc-4-1/aocc-compiler-4.1.0.tar" ], "version": "4.1.0" }, { "downloads": [ "https://download.amd.com/developer/eula/aocc/aocc-4-2/aocc-compiler-4.2.0.tar" ], "version": "4.2.0" }, { "downloads": [ "https://download.amd.com/developer/eula/aocc/aocc-5-0/aocc-compiler-5.0.0.tar" ], "version": "5.0.0" } ] }, "aocl-compression": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/amd/aocl-compression/archive/5.1.tar.gz", "https://github.com/amd/aocl-compression/archive/5.0.tar.gz", "https://github.com/amd/aocl-compression/archive/4.2.tar.gz", "https://github.com/amd/aocl-compression.git" ], "homepages": [ "https://www.amd.com/en/developer/aocl/compression.html" ], "licenses": [], "maintainers": [ "amd-toolchain-support" ], "name": "aocl-compression", "patches": [], "summary": " AOCL-Compression is a software framework of various lossless\ncompression and decompression methods tuned and optimized for AMD Zen\nbased CPUs. This framework offers a single set of unified APIs for all\nthe supported compression and decompression methods which facilitate the\napplications to easily integrate and use them. AOCL-Compression supports\nlz4, zlib/deflate, lzma, zstd, bzip2, snappy, and lz4hc based\ncompression and decompression methods along with their native APIs. The\nlibrary offers openMP based multi-threaded implementation of lz4, zlib,\nzstd and snappy compression methods. It supports the dynamic dispatcher\nfeature that executes the most optimal function variant implemented\nusing Function Multi-versioning thereby offering a single optimized\nlibrary portable across different x86 CPU architectures. AOCL-\nCompression framework is developed in C for UNIX\u00ae and Windows\u00ae based\nsystems. A test suite is provided for the validation and performance\nbenchmarking of the supported compression and decompression methods.\nThis suite also supports the benchmarking of IPP compression methods,\nsuch as, lz4, lz4hc, zlib and bzip2. The library build framework offers\nCTest based testing of the test cases implemented using GTest and the\nlibrary test suite. LICENSING INFORMATION: By downloading, installing\nand using this software, you agree to the terms and conditions of the\nAMD AOCL-Compression license agreement. You may obtain a copy of this\nlicense agreement from https://www.amd.com/content/dam/amd/en/documents/\ndeveloper/version-4-2-eulas/compression-elua-4-2.pdf\n", "version": [ { "downloads": [ "https://github.com/amd/aocl-compression/archive/4.2.tar.gz" ], "version": "4.2" }, { "downloads": [ "https://github.com/amd/aocl-compression/archive/5.0.tar.gz" ], "version": "5.0" }, { "downloads": [ "https://github.com/amd/aocl-compression/archive/5.1.tar.gz" ], "version": "5.1" } ] }, "aocl-crypto": { "alias": [], "categories": [], "dependencies": [ "aocl-utils", "c", "cmake", "cxx", "gmake", "intel-oneapi-ippcp", "ninja", "openssl", "p7zip" ], "downloads": [ "https://github.com/amd/aocl-crypto/archive/5.1.tar.gz", "https://github.com/amd/aocl-crypto/archive/5.0.tar.gz", "https://github.com/amd/aocl-crypto/archive/4.2.tar.gz", "https://github.com/amd/aocl-crypto/" ], "homepages": [ "https://www.amd.com/en/developer/aocl/cryptography.html" ], "licenses": [], "maintainers": [ "amd-toolchain-support" ], "name": "aocl-crypto", "patches": [ "lsb_release.patch when @5.0" ], "summary": " AOCL-Crypto is a library consisting of basic cryptographic functions\noptimized and tuned for AMD Zen\u2122 based microarchitecture. This library\nprovides a unified solution for Cryptographic routines such as AES\n(Advanced Encryption Standard) encryption/decryption routines (CFB, CTR,\nCBC, CCM, GCM, OFB, SIV, XTS), SHA (Secure Hash Algorithms) routines\n(SHA2, SHA3, SHAKE), Message Authentication Code (CMAC, HMAC), ECDH\n(Elliptic-curve Diffie\u2013Hellman) and RSA (Rivest, Shamir, and Adleman)\nkey generation functions, etc. AOCL Crypto supports a dynamic dispatcher\nfeature that executes the most optimal function variant implemented\nusing Function Multi-versioning thereby offering a single optimized\nlibrary portable across different x86 CPU architectures. AOCL Crypto\nframework is developed in C / C++ for Unix and Windows based systems.\nLICENSING INFORMATION: By downloading, installing and using this\nsoftware, you agree to the terms and conditions of the AMD AOCL-\nCryptography license agreement. You may obtain a copy of this license\nagreement from https://www.amd.com/en/developer/aocl/cryptography/eula/c\nryptography-4-2-eula.html\n", "version": [ { "downloads": [ "https://github.com/amd/aocl-crypto/archive/4.2.tar.gz" ], "version": "4.2" }, { "downloads": [ "https://github.com/amd/aocl-crypto/archive/5.0.tar.gz" ], "version": "5.0" }, { "downloads": [ "https://github.com/amd/aocl-crypto/archive/5.1.tar.gz" ], "version": "5.1" } ] }, "aocl-da": { "alias": [], "categories": [], "dependencies": [ "amdblis", "amdlibflame", "aocl-sparse", "aocl-utils", "boost", "c", "cmake", "cxx", "fortran", "gmake", "ninja", "patchelf", "py-numpy", "py-pip", "py-pybind11", "py-pytest", "py-scikit-learn", "py-setuptools", "py-wheel", "python" ], "downloads": [ "https://github.com/amd/aocl-data-analytics/archive/5.1.tar.gz", "https://github.com/amd/aocl-data-analytics/archive/5.0.tar.gz", "https://github.com/amd/aocl-data-analytics" ], "homepages": [ "https://www.amd.com/en/developer/aocl/data-analytics.html" ], "licenses": [], "maintainers": [ "amd-toolchain-support" ], "name": "aocl-da", "patches": [ "0001-Fix-to-enable-cmake-to-be-configured-with-examples-o.patch when @5.0" ], "summary": " The AOCL Data Analytics Library (AOCL-DA) is a data analytics library\nproviding optimized building blocks for data analysis. It is written\nwith a C-compatible interface to make it as seamless as possible to\nintegrate with the library from whichever programming language you are\nusing. The intended workflow for using the library is as follows: \u2022 load\ndata from memory by reading CSV files or using the in-built da_datastore\nobject \u2022 preprocess the data by removing missing values, standardizing,\nand selecting certain subsets of the data, before extracting contiguous\narrays of data from the da_datastore objects \u2022 data processing (e.g.\nprincipal component analysis, linear model fitting, etc.) C++ example\nprograms can be found in the examples folder of your installation.\n", "version": [ { "downloads": [ "https://github.com/amd/aocl-data-analytics/archive/5.0.tar.gz" ], "version": "5.0" }, { "downloads": [ "https://github.com/amd/aocl-data-analytics/archive/5.1.tar.gz" ], "version": "5.1" } ] }, "aocl-libmem": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/amd/aocl-libmem/archive/5.1.tar.gz", "https://github.com/amd/aocl-libmem/archive/5.0.tar.gz", "https://github.com/amd/aocl-libmem/archive/4.2.tar.gz", "https://github.com/amd/aocl-libmem" ], "homepages": [ "https://www.amd.com/en/developer/aocl/libmem.html" ], "licenses": [], "maintainers": [ "amd-toolchain-support" ], "name": "aocl-libmem", "patches": [ "cmake.patch when @5.0" ], "summary": " AOCL-LibMem is a Linux library of data movement and manipulation\nfunctions (such as memcpy and strcpy) highly optimized for AMD Zen\nmicro-architecture. This library has multiple implementations of each\nfunction that can be chosen based on the application requirements as per\nalignments, instruction choice, threshold values, and tunable\nparameters. By default, this library will choose the best fit\nimplementation based on the underlying micro-architectural support for\nCPU features and instructions. LICENSING INFORMATION: By downloading,\ninstalling and using this software, you agree to the terms and\nconditions of the AMD AOCL-LibMem license agreement. You may obtain a\ncopy of this license agreement from\nhttps://www.amd.com/en/developer/aocl/libmem/eula/libmem-4-2-eula.html\n", "version": [ { "downloads": [ "https://github.com/amd/aocl-libmem/archive/4.2.tar.gz" ], "version": "4.2" }, { "downloads": [ "https://github.com/amd/aocl-libmem/archive/5.0.tar.gz" ], "version": "5.0" }, { "downloads": [ "https://github.com/amd/aocl-libmem/archive/5.1.tar.gz" ], "version": "5.1" } ] }, "aocl-sparse": { "alias": [], "categories": [], "dependencies": [ "amdblis", "amdlibflame", "aocl-utils", "boost", "c", "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/amd/aocl-sparse/archive/5.1.tar.gz", "https://github.com/amd/aocl-sparse/archive/5.0.tar.gz", "https://github.com/amd/aocl-sparse/archive/4.2.tar.gz", "https://github.com/amd/aocl-sparse/archive/4.1.tar.gz", "https://github.com/amd/aocl-sparse/archive/4.0.tar.gz", "https://github.com/amd/aocl-sparse/archive/3.2.tar.gz", "https://github.com/amd/aocl-sparse/archive/3.1.tar.gz", "https://github.com/amd/aocl-sparse/archive/3.0.tar.gz", "https://github.com/amd/aocl-sparse/archive/2.2.tar.gz", "https://github.com/amd/aocl-sparse" ], "homepages": [ "https://www.amd.com/en/developer/aocl/sparse.html" ], "licenses": [ "MIT" ], "maintainers": [ "amd-toolchain-support" ], "name": "aocl-sparse", "patches": [], "summary": "AOCL-Sparse is a library that contains basic linear algebra subroutines\nfor sparse matrices and vectors optimized for AMD EPYC family of\nprocessors. It is designed to be used with C and C++. Current\nfunctionality of sparse library supports SPMV function with CSR and\nELLPACK formats. LICENSING INFORMATION: By downloading, installing and\nusing this software, you agree to the terms and conditions of the AMD\nAOCL-Sparse license agreement. You may obtain a copy of this license\nagreement from https://www.amd.com/en/developer/aocl/sparse/eula/sparse-\nlibraries-4-2-eula.html\nhttps://www.amd.com/en/developer/aocl/sparse/eula/sparse-libraries-\neula.html\n", "version": [ { "downloads": [ "https://github.com/amd/aocl-sparse/archive/2.2.tar.gz" ], "version": "2.2" }, { "downloads": [ "https://github.com/amd/aocl-sparse/archive/3.0.tar.gz" ], "version": "3.0" }, { "downloads": [ "https://github.com/amd/aocl-sparse/archive/3.1.tar.gz" ], "version": "3.1" }, { "downloads": [ "https://github.com/amd/aocl-sparse/archive/3.2.tar.gz" ], "version": "3.2" }, { "downloads": [ "https://github.com/amd/aocl-sparse/archive/4.0.tar.gz" ], "version": "4.0" }, { "downloads": [ "https://github.com/amd/aocl-sparse/archive/4.1.tar.gz" ], "version": "4.1" }, { "downloads": [ "https://github.com/amd/aocl-sparse/archive/4.2.tar.gz" ], "version": "4.2" }, { "downloads": [ "https://github.com/amd/aocl-sparse/archive/5.0.tar.gz" ], "version": "5.0" }, { "downloads": [ "https://github.com/amd/aocl-sparse/archive/5.1.tar.gz" ], "version": "5.1" } ] }, "aocl-utils": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "doxygen", "gmake", "ninja" ], "downloads": [ "https://github.com/amd/aocl-utils/archive/refs/tags/5.1.tar.gz", "https://github.com/amd/aocl-utils/archive/refs/tags/5.0.tar.gz", "https://github.com/amd/aocl-utils/archive/refs/tags/4.2.tar.gz", "https://github.com/amd/aocl-utils/archive/refs/tags/4.1.tar.gz", "https://github.com/amd/aocl-utils" ], "homepages": [ "https://www.amd.com/en/developer/aocl/utils.html" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "amd-toolchain-support" ], "name": "aocl-utils", "patches": [], "summary": "The library AOCL-Utils is intended to provide a uniform interface to all\nAOCL libraries to access CPU features, especially for AMD CPUs. The\nlibrary provides the following features: * Core details * Flags\navailable/usable * ISA available/usable * Topology about L1/L2/L3 AOCL-\nUtils is designed to be integrated into other AMD AOCL libraries. Each\nproject has their own mechanism to identify CPU and provide necessary\nfeatures such as \"dynamic dispatch\".The main purpose of this library is\nto provide a centralized mechanism to update/validate and provide\ninformation to the users of this library. LICENSING INFORMATION: By\ndownloading, installing and using this software, you agree to the terms\nand conditions of the AMD AOCL-Utils license agreement. You may obtain a\ncopy of this license agreement from https://www.amd.com/content/dam/amd/\nen/documents/developer/version-4-2-eulas/utils-elua-4-2.pdf\n", "version": [ { "downloads": [ "https://github.com/amd/aocl-utils/archive/refs/tags/4.1.tar.gz" ], "version": "4.1" }, { "downloads": [ "https://github.com/amd/aocl-utils/archive/refs/tags/4.2.tar.gz" ], "version": "4.2" }, { "downloads": [ "https://github.com/amd/aocl-utils/archive/refs/tags/5.0.tar.gz" ], "version": "5.0" }, { "downloads": [ "https://github.com/amd/aocl-utils/archive/refs/tags/5.1.tar.gz" ], "version": "5.1" } ] }, "aoflagger": { "alias": [], "categories": [], "dependencies": [ "boost", "casacore", "cfitsio", "cmake", "cxx", "fftw", "gmake", "lapack", "libxml2", "ninja" ], "downloads": [ "https://downloads.sourceforge.net/project/aoflagger/aoflagger-2.10.0/aoflagger-2.10.0.tar.bz2" ], "homepages": [ "https://sourceforge.net/projects/aoflagger/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "aoflagger", "patches": [], "summary": "RFI detector and quality analysis for astronomical radio observations.\n", "version": [ { "downloads": [ "https://downloads.sourceforge.net/project/aoflagger/aoflagger-2.10.0/aoflagger-2.10.0.tar.bz2" ], "version": "2.10.0" } ] }, "aom": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "nasm", "ninja" ], "downloads": [ "https://aomedia.googlesource.com/aom" ], "homepages": [ "https://aomedia.googlesource.com/aom" ], "licenses": [ "BSD-2-Clause AND AOM-Patent-License-1.0" ], "maintainers": [], "name": "aom", "patches": [], "summary": "Alliance for Open Media AOM AV1 Codec Library\n", "version": [ { "repositories": [ { "commit": "10aece4157eb79315da205f39e19bf6ab3ee30d0", "type": "git", "url": "https://aomedia.googlesource.com/aom" } ], "version": "3.12.1" } ] }, "aotriton": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "comgr", "cxx", "gmake", "hip", "hsa-rocr-dev", "llvm-amdgpu", "ninja", "pkgconfig", "py-filelock", "py-setuptools", "python", "xz", "z3", "zlib-api" ], "downloads": [ "https://github.com/ROCm/aotriton/archive/refs/tags/0.9.2b.tar.gz", "https://github.com/ROCm/aotriton/archive/refs/tags/0.9.1b.tar.gz", "https://github.com/ROCm/aotriton/archive/refs/tags/0.9b.tar.gz", "https://github.com/ROCm/aotriton/archive/refs/tags/0.8.2b.tar.gz", "https://github.com/ROCm/aotriton/archive/refs/tags/0.8.1b.tar.gz", "https://github.com/ROCm/aotriton/archive/refs/tags/0.8b.tar.gz", "https://github.com/ROCm/aotriton.git" ], "homepages": [ "https://github.com/ROCm/aotriton" ], "licenses": [ "MIT" ], "maintainers": [ "afzpatel", "renjithravindrankannath", "srekolam" ], "name": "aotriton", "patches": [], "summary": "Ahead of Time (AOT) Triton Math Library.\n", "version": [ { "repositories": [ { "commit": "3a80554a88ae3b1bcf4b27bc74ad9d7b913b58f6", "type": "git", "url": "https://github.com/ROCm/aotriton.git" } ], "version": "0.8.1b" }, { "repositories": [ { "commit": "b24f43a9771622faa157155568b9a200c3b49e41", "type": "git", "url": "https://github.com/ROCm/aotriton.git" } ], "version": "0.8.2b" }, { "repositories": [ { "commit": "6f8cbcac8a92775291bb1ba8f514d4beb350baf4", "type": "git", "url": "https://github.com/ROCm/aotriton.git" } ], "version": "0.8b" }, { "repositories": [ { "commit": "6f72f6943c9da89d6f0e420c29a5d33a122185cf", "type": "git", "url": "https://github.com/ROCm/aotriton.git" } ], "version": "0.9.1b" }, { "repositories": [ { "commit": "b388d223d8c7213545603e00f6f3148c54d1f525", "type": "git", "url": "https://github.com/ROCm/aotriton.git" } ], "version": "0.9.2b" }, { "repositories": [ { "commit": "f539cf9c2bf99dca8d0170d156c3f6f0b7b5cce5", "type": "git", "url": "https://github.com/ROCm/aotriton.git" } ], "version": "0.9b" } ] }, "apache-tvm": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cuda", "cxx", "gmake", "llvm", "ncurses", "ninja", "python", "zlib-api" ], "downloads": [ "https://github.com/apache/tvm/releases/download/v0.19.0/apache-tvm-src-v0.19.0.tar.gz" ], "homepages": [ "https://tvm.apache.org/" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "apache-tvm", "patches": [], "summary": "Apache TVM is an open source machine learning compiler framework for\nCPUs, GPUs, and machine learning accelerators. It aims to enable machine\nlearning engineers to optimize and run computations efficiently on any\nhardware backend.\n", "version": [ { "downloads": [ "https://github.com/apache/tvm/releases/download/v0.19.0/apache-tvm-src-v0.19.0.tar.gz" ], "version": "0.19.0" } ] }, "apachetop": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "cxx", "gmake", "gnuconfig", "libtool", "m4", "readline" ], "downloads": [ "https://github.com/tessus/apachetop/archive/0.23.2.tar.gz", "https://github.com/tessus/apachetop/archive/0.19.7.tar.gz", "https://github.com/tessus/apachetop/archive/0.18.4.tar.gz", "https://github.com/tessus/apachetop/archive/0.17.4.tar.gz", "https://github.com/tessus/apachetop/archive/0.15.6.tar.gz" ], "homepages": [ "https://github.com/tessus/apachetop" ], "licenses": [], "maintainers": [], "name": "apachetop", "patches": [], "summary": "ApacheTop watches a logfile generated by Apache (in standard common or\ncombined logformat, and generates human-parsable output in realtime.)\nSee the INSTALL file for ./configure options (there's a few newly added\nsince v0.11)\n", "version": [ { "downloads": [ "https://github.com/tessus/apachetop/archive/0.15.6.tar.gz" ], "version": "0.15.6" }, { "downloads": [ "https://github.com/tessus/apachetop/archive/0.17.4.tar.gz" ], "version": "0.17.4" }, { "downloads": [ "https://github.com/tessus/apachetop/archive/0.18.4.tar.gz" ], "version": "0.18.4" }, { "downloads": [ "https://github.com/tessus/apachetop/archive/0.19.7.tar.gz" ], "version": "0.19.7" }, { "downloads": [ "https://github.com/tessus/apachetop/archive/0.23.2.tar.gz" ], "version": "0.23.2" } ] }, "ape": { "alias": [], "categories": [], "dependencies": [ "gmake", "gsl", "libxc" ], "downloads": [ "https://gitlab.com/ape/ape/-/archive/2.2.1/ape-2.2.1.tar.gz" ], "homepages": [ "https://www.tddft.org/programs/APE/" ], "licenses": [], "maintainers": [], "name": "ape", "patches": [], "summary": "A tool for generating atomic pseudopotentials within a Density-\nFunctional Theory framework\n", "version": [ { "downloads": [ "https://gitlab.com/ape/ape/-/archive/2.2.1/ape-2.2.1.tar.gz" ], "version": "2.2.1" } ] }, "aperture-photometry": { "alias": [], "categories": [], "dependencies": [ "java" ], "downloads": [ "https://web.ipac.caltech.edu/staff/laher/apt/APT_v3.0.2.tar.gz", "https://web.ipac.caltech.edu/staff/laher/apt/APT_v2.8.4.tar.gz" ], "homepages": [ "https://www.aperturephotometry.org/" ], "licenses": [], "maintainers": [ "snehring" ], "name": "aperture-photometry", "patches": [], "summary": "Aperture Photometry Tool APT is software for astronomical research\n", "version": [ { "downloads": [ "https://web.ipac.caltech.edu/staff/laher/apt/APT_v2.8.4.tar.gz" ], "version": "2.8.4" }, { "downloads": [ "https://web.ipac.caltech.edu/staff/laher/apt/APT_v3.0.2.tar.gz" ], "version": "3.0.2" } ] }, "apex": { "alias": [], "categories": [], "dependencies": [ "activeharmony", "binutils", "c", "cmake", "cuda", "cxx", "fortran", "gettext", "gmake", "gperftools", "hip", "jemalloc", "kokkos", "lm-sensors", "mpi", "ninja", "otf2", "papi", "rocm-smi-lib", "roctracer-dev", "sycl", "zlib-api" ], "downloads": [ "https://github.com/UO-OACISS/apex/archive/vdevelop.tar.gz", "https://github.com/UO-OACISS/apex/archive/vmaster.tar.gz", "https://github.com/UO-OACISS/apex/archive/v2.7.1.tar.gz", "https://github.com/UO-OACISS/apex/archive/v2.7.0.tar.gz", "https://github.com/UO-OACISS/apex/archive/v2.6.5.tar.gz", "https://github.com/UO-OACISS/apex/archive/v2.6.4.tar.gz", "https://github.com/UO-OACISS/apex/archive/v2.6.3.tar.gz", "https://github.com/UO-OACISS/apex/archive/v2.6.2.tar.gz", "https://github.com/UO-OACISS/apex/archive/v2.6.1.tar.gz", "https://github.com/UO-OACISS/apex/archive/v2.6.0.tar.gz", "https://github.com/UO-OACISS/apex" ], "homepages": [ "https://uo-oaciss.github.io/apex" ], "licenses": [], "maintainers": [ "khuck" ], "name": "apex", "patches": [], "summary": "Autonomic Performance Environment for eXascale (APEX).\n", 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"url": "https://github.com/lelutin/backupninja.git" } ], "version": "master" } ] }, "backward-cpp": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "gmake", "libdwarf", "ninja" ], "downloads": [ "https://github.com/bombela/backward-cpp/archive/refs/tags/vmaster.tar.gz", "https://github.com/bombela/backward-cpp/archive/refs/tags/v1.6.tar.gz", "https://github.com/bombela/backward-cpp/archive/refs/tags/v1.5.tar.gz", "https://github.com/bombela/backward-cpp/archive/refs/tags/v1.4.tar.gz", "https://github.com/bombela/backward-cpp/archive/refs/tags/v1.3.tar.gz", "https://github.com/bombela/backward-cpp/archive/refs/tags/v1.2.tar.gz", "https://github.com/bombela/backward-cpp/archive/refs/tags/v1.1.tar.gz", "https://github.com/bombela/backward-cpp.git" ], "homepages": [ "https://github.com/bombela/backward-cpp" ], "licenses": [ "MIT" ], "maintainers": [], "name": "backward-cpp", "patches": [], "summary": "A beautiful stack trace pretty printer for C++.\n", "version": [ { "downloads": [ "https://github.com/bombela/backward-cpp/archive/refs/tags/v1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ "https://github.com/bombela/backward-cpp/archive/refs/tags/v1.2.tar.gz" ], "version": "1.2" }, { "downloads": [ "https://github.com/bombela/backward-cpp/archive/refs/tags/v1.3.tar.gz" ], "version": "1.3" }, { "downloads": [ "https://github.com/bombela/backward-cpp/archive/refs/tags/v1.4.tar.gz" ], "version": "1.4" }, { "downloads": [ "https://github.com/bombela/backward-cpp/archive/refs/tags/v1.5.tar.gz" ], "version": "1.5" }, { "downloads": [ "https://github.com/bombela/backward-cpp/archive/refs/tags/v1.6.tar.gz" ], "version": "1.6" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/bombela/backward-cpp.git" } ], "version": "master" } ] }, "bam-readcount": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/genome/bam-readcount/archive/v1.0.1.tar.gz", "https://github.com/genome/bam-readcount/archive/v0.8.0.tar.gz" ], "homepages": [ "https://github.com/genome/bam-readcount" ], "licenses": [ "MIT" ], "maintainers": [], "name": "bam-readcount", "patches": [], "summary": "Bam-readcount generates metrics at single nucleotide positions.\n", "version": [ { "downloads": [ "https://github.com/genome/bam-readcount/archive/v0.8.0.tar.gz" ], "version": "0.8.0" }, { "downloads": [ "https://github.com/genome/bam-readcount/archive/v1.0.1.tar.gz" ], "version": "1.0.1" } ] }, "bamaddrg": { "alias": [], "categories": [], "dependencies": [ "bamtools", "cxx", "gmake" ], "downloads": [ "https://github.com/ilbiondo/bamaddrg/archive/v0.1.tar.gz", "https://github.com/ilbiondo/bamaddrg.git" ], "homepages": [ "https://github.com/ekg/bamaddrg" ], "licenses": [], "maintainers": [], "name": "bamaddrg", "patches": [], "summary": "bamaddrg adds read groups to input BAM files, streams BAM output on\nstdout\n", "version": [ { "downloads": [ "https://github.com/ilbiondo/bamaddrg/archive/v0.1.tar.gz" ], "version": "0.1" } ] }, "bamdst": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "zlib-api" ], "downloads": [ "https://github.com/shiquan/bamdst.git" ], "homepages": [ "https://github.com/shiquan/bamdst" ], "licenses": [], "maintainers": [], "name": "bamdst", "patches": [], "summary": "Bamdst is a a lightweight bam file depth statistical tool.\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/shiquan/bamdst.git" } ], "version": "master" } ] }, "bamtools": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "gmake", "jsoncpp", "ninja", "zlib-api" ], "downloads": [ "https://github.com/pezmaster31/bamtools/archive/v2.5.2.tar.gz", "https://github.com/pezmaster31/bamtools/archive/v2.5.1.tar.gz", "https://github.com/pezmaster31/bamtools/archive/v2.5.0.tar.gz", "https://github.com/pezmaster31/bamtools/archive/v2.4.1.tar.gz", "https://github.com/pezmaster31/bamtools/archive/v2.4.0.tar.gz", "https://github.com/pezmaster31/bamtools/archive/v2.3.0.tar.gz", "https://github.com/pezmaster31/bamtools/archive/v2.2.3.tar.gz" ], "homepages": [ "https://github.com/pezmaster31/bamtools" ], "licenses": [ "MIT" ], "maintainers": [], "name": "bamtools", "patches": [], "summary": "C++ API & command-line toolkit for working with BAM data.\n", "version": [ { "downloads": [ "https://github.com/pezmaster31/bamtools/archive/v2.2.3.tar.gz" ], "version": "2.2.3" }, { "downloads": [ "https://github.com/pezmaster31/bamtools/archive/v2.3.0.tar.gz" ], "version": "2.3.0" }, { "downloads": [ "https://github.com/pezmaster31/bamtools/archive/v2.4.0.tar.gz" ], "version": "2.4.0" }, { "downloads": [ "https://github.com/pezmaster31/bamtools/archive/v2.4.1.tar.gz" ], "version": "2.4.1" }, { "downloads": [ "https://github.com/pezmaster31/bamtools/archive/v2.5.0.tar.gz" ], "version": "2.5.0" }, { "downloads": [ "https://github.com/pezmaster31/bamtools/archive/v2.5.1.tar.gz" ], "version": "2.5.1" }, { "downloads": [ "https://github.com/pezmaster31/bamtools/archive/v2.5.2.tar.gz" ], "version": "2.5.2" } ] }, "bamutil": { "alias": [], "categories": [], "dependencies": [ "cxx", "git", "gmake", "zlib-api" ], "downloads": [ "https://github.com/statgen/bamUtil/archive/refs/tags/v1.0.15.tar.gz", "https://genome.sph.umich.edu/w/images/7/70/BamUtilLibStatGen.1.0.13.tgz", "https://github.com/statgen/bamUtil.git" ], "homepages": [ "https://genome.sph.umich.edu/wiki/BamUtil" ], "licenses": [], "maintainers": [ "snehring" ], "name": "bamutil", "patches": [ "libstatgen-issue-9.patch when @1.0.13", "libstatgen-issue-19.patch when @1.0.13", "libstatgen-issue-17.patch when @1.0.13", "libstatgen-issue-7.patch when @1.0.13", "verifybamid-issue-8.patch when @1.0.13" ], "summary": "bamUtil is a repository that contains several programs that perform\noperations on SAM/BAM files. All of these programs are built into a\nsingle executable, bam.\n", "version": [ { "downloads": [ "https://genome.sph.umich.edu/w/images/7/70/BamUtilLibStatGen.1.0.13.tgz" ], "version": "1.0.13" }, { "downloads": [ "https://github.com/statgen/bamUtil/archive/refs/tags/v1.0.15.tar.gz" ], "version": "1.0.15" } ] }, "banner": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://github.com/pronovic/banner/archive/refs/tags/BANNER_V1.3.5.tar.gz" ], "homepages": [ "https://github.com/pronovic/banner" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [ "cessenat" ], "name": "banner", "patches": [], "summary": "banner is a classic-style banner program similar to the one found in\nSolaris or AIX in the late 1990s. The banner program prints a short\nstring to the console in very large letters.\n", "version": [ { "downloads": [ "https://github.com/pronovic/banner/archive/refs/tags/BANNER_V1.3.5.tar.gz" ], "version": "1.3.5" } ] }, "bannergrab": { "alias": [], "categories": [], "dependencies": [ "c", "gmake" ], "downloads": [ "https://github.com/johanburati/bannergrab.git" ], "homepages": [ "https://github.com/johanburati/bannergrab" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "bannergrab", "patches": [], "summary": "Bannergrab is a simple tool, designed to collect information from\nnetwork services. It can do this using two different methods; grab the\nconnection banners and send triggers and collect the responses.\nBannergrab defaults to sending triggers.\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/johanburati/bannergrab.git" } ], "version": "master" } ] }, "barrnap": { "alias": [], "categories": [], "dependencies": [ "hmmer" ], "downloads": [ "https://github.com/tseemann/barrnap/archive/0.9.tar.gz", "https://github.com/tseemann/barrnap/archive/0.8.tar.gz", "https://github.com/tseemann/barrnap/archive/0.7.tar.gz", "https://github.com/tseemann/barrnap/archive/0.6.tar.gz" ], "homepages": [ "https://github.com/tseemann/barrnap" ], "licenses": [ "CC0-1.0" ], "maintainers": [], "name": "barrnap", "patches": [], "summary": "Barrnap predicts the location of ribosomal RNA genes in genomes.\n", "version": [ { "downloads": [ "https://github.com/tseemann/barrnap/archive/0.6.tar.gz" ], "version": "0.6" }, { "downloads": [ "https://github.com/tseemann/barrnap/archive/0.7.tar.gz" ], "version": "0.7" }, { "downloads": [ "https://github.com/tseemann/barrnap/archive/0.8.tar.gz" ], "version": "0.8" }, { "downloads": [ "https://github.com/tseemann/barrnap/archive/0.9.tar.gz" ], "version": "0.9" } ] }, "bart": { "alias": [], "categories": [], "dependencies": [ "blas", "c", "cuda", "cxx", "fftw", "gmake", "lapack", "libpng", "py-matplotlib", "py-numpy", "python", "python-venv" ], "downloads": [ "https://github.com/mrirecon/bart/archive/v0.7.00.tar.gz", "https://github.com/mrirecon/bart/archive/v0.6.00.tar.gz", "https://github.com/mrirecon/bart/archive/v0.5.00.tar.gz" ], "homepages": [ "https://mrirecon.github.io/bart/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "bart", "patches": [ "https://github.com/mrirecon/bart/commit/b62ca4972d5ac41a44217a5c27123c15daae74db.patch?full_index=1 when @0.5.00", "bart_path-0.5.00.patch when @0.5.00", "Makefile.patch when @:0.6.0", 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"http://barvinok.gforge.inria.fr/barvinok-0.41.5.tar.bz2" ], "version": "0.41.5" } ] }, "bash": { "alias": [], "categories": [ "detectable" ], "dependencies": [ "autoconf", "automake", "c", "gettext", "gmake", "gnuconfig", "iconv", "libtool", "ncurses", "readline" ], "downloads": [ "https://ftpmirror.gnu.org/bash/bash-5.3.tar.gz", "https://ftpmirror.gnu.org/bash/bash-5.2.tar.gz", "https://ftpmirror.gnu.org/bash/bash-5.1.tar.gz", "https://ftpmirror.gnu.org/bash/bash-5.0.tar.gz", "https://ftpmirror.gnu.org/bash/bash-4.4.tar.gz", "https://ftpmirror.gnu.org/bash/bash-4.3.tar.gz" ], "homepages": [ "https://www.gnu.org/software/bash/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "bash", "patches": [ "https://ftpmirror.gnu.org/bash/bash-5.3-patches/bash53-001 when @5.3", "https://ftpmirror.gnu.org/bash/bash-5.3-patches/bash53-002 when @5.3", "https://ftpmirror.gnu.org/bash/bash-5.3-patches/bash53-003 when @5.3", "https://ftpmirror.gnu.org/bash/bash-5.2-patches/bash52-001 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It solves for the numerical\nsolution of systems of polynomial equations using homotopy continuation.\n", "version": [ { "downloads": [ "https://bertini.nd.edu/BertiniSource_v1.5.tar.gz" ], "version": "1.5" } ] }, "bfs": { "alias": [], "categories": [], "dependencies": [ "acl", "attr", "c", "gmake", "libcap", "liburing", "oniguruma", "sed" ], "downloads": [ "https://github.com/tavianator/bfs/archive/refs/tags/main.tar.gz", "https://github.com/tavianator/bfs/archive/refs/tags/4.1.tar.gz", "https://github.com/tavianator/bfs/archive/refs/tags/4.0.6.tar.gz", "https://github.com/tavianator/bfs/archive/refs/tags/4.0.5.tar.gz", "https://github.com/tavianator/bfs/archive/refs/tags/4.0.4.tar.gz", "https://github.com/tavianator/bfs/archive/refs/tags/4.0.1.tar.gz", "https://github.com/tavianator/bfs/archive/refs/tags/3.1.1.tar.gz", "https://github.com/tavianator/bfs/archive/refs/tags/3.1.tar.gz", "https://github.com/tavianator/bfs/archive/refs/tags/3.0.4.tar.gz", "https://github.com/tavianator/bfs/archive/refs/tags/3.0.2.tar.gz", "https://github.com/tavianator/bfs/archive/refs/tags/3.0.1.tar.gz", "https://github.com/tavianator/bfs.git" ], "homepages": [ "https://github.com/tavianator/bfs" ], "licenses": [ "0BSD" ], "maintainers": [ "alecbcs" ], "name": "bfs", "patches": [], "summary": "BFS is a breadth-first variant of the UNIX find command that offers\nconsistent, intuitive behavior and improved performance.\n", "version": [ { "downloads": [ "https://github.com/tavianator/bfs/archive/refs/tags/3.0.1.tar.gz" ], "version": "3.0.1" }, { "downloads": [ "https://github.com/tavianator/bfs/archive/refs/tags/3.0.2.tar.gz" ], "version": "3.0.2" }, { "downloads": [ "https://github.com/tavianator/bfs/archive/refs/tags/3.0.4.tar.gz" ], "version": "3.0.4" }, { "downloads": [ "https://github.com/tavianator/bfs/archive/refs/tags/3.1.tar.gz" ], "version": "3.1" }, { "downloads": [ "https://github.com/tavianator/bfs/archive/refs/tags/3.1.1.tar.gz" ], "version": "3.1.1" }, { "downloads": [ "https://github.com/tavianator/bfs/archive/refs/tags/4.0.1.tar.gz" ], "version": "4.0.1" }, { "downloads": [ "https://github.com/tavianator/bfs/archive/refs/tags/4.0.4.tar.gz" ], "version": "4.0.4" }, { "downloads": [ "https://github.com/tavianator/bfs/archive/refs/tags/4.0.5.tar.gz" ], "version": "4.0.5" }, { "downloads": [ "https://github.com/tavianator/bfs/archive/refs/tags/4.0.6.tar.gz" ], "version": "4.0.6" }, { "downloads": [ "https://github.com/tavianator/bfs/archive/refs/tags/4.1.tar.gz" ], "version": "4.1" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/tavianator/bfs.git" } ], "version": "main" } ] }, "bgen": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "cxx", "fossil", "python", "sqlite", "zlib-api", "zstd" ], "downloads": [ "https://enkre.net/cgi-bin/code/bgen/tarball/6ac2d582f9/BGEN-6ac2d582f9.tar.gz" ], "homepages": [ "https://enkre.net/cgi-bin/code/bgen" ], "licenses": [ "BSL-1.0" ], "maintainers": [ "teaguesterling" ], "name": "bgen", "patches": [ "dont-build-with-bundled-deps.patch when ~bundled-deps" ], "summary": "This repository contains a reference implementation of the BGEN format,\nwritten in C++. The library can be used as the basis for BGEN support in\nother software, or as a reference for developers writing their own\nimplementations of the BGEN format. If you make use of the BGEN library,\nits tools or example programs, please cite: Band, G. and Marchini, J.,\n\"BGEN: a binary file format for imputed genotype and haplotype data\",\nbioArxiv 308296; doi: https://doi.org/10.1101/308296.\n", "version": [ { "downloads": [ "https://enkre.net/cgi-bin/code/bgen/tarball/6ac2d582f9/BGEN-6ac2d582f9.tar.gz" ], "version": "1.1.7" } ] }, "bgpdump": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "bzip2", "c", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://github.com/RIPE-NCC/bgpdump.git" ], "homepages": [ "https://github.com/RIPE-NCC/bgpdump/wiki" ], "licenses": [], "maintainers": [], "name": "bgpdump", "patches": [], "summary": "Utility and C Library for parsing MRT files\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/RIPE-NCC/bgpdump.git" } ], "version": "master" } ] }, "bib2xhtml": { "alias": [], "categories": [], 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This\nlibrary is intensively used in BigDFT packages.\n", "version": [ { "downloads": [ "https://gitlab.com/l_sim/bigdft-suite/-/archive/1.9.0/bigdft-suite-1.9.0.tar.gz" ], "version": "1.9.0" }, { "downloads": [ "https://gitlab.com/l_sim/bigdft-suite/-/archive/1.9.1/bigdft-suite-1.9.1.tar.gz" ], "version": "1.9.1" }, { "downloads": [ "https://gitlab.com/l_sim/bigdft-suite/-/archive/1.9.2/bigdft-suite-1.9.2.tar.gz" ], "version": "1.9.2" }, { "downloads": [ "https://gitlab.com/l_sim/bigdft-suite/-/archive/1.9.3/bigdft-suite-1.9.3.tar.gz" ], "version": "1.9.3" }, { "downloads": [ "https://gitlab.com/l_sim/bigdft-suite/-/archive/1.9.4/bigdft-suite-1.9.4.tar.gz" ], "version": "1.9.4" }, { "downloads": [ "https://gitlab.com/l_sim/bigdft-suite/-/archive/1.9.5/bigdft-suite-1.9.5.tar.gz" ], "version": "1.9.5" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://gitlab.com/l_sim/bigdft-suite.git" } ], "version": "develop" } ] }, "bigdft-libabinit": { 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A\nwrapper for bowtie to produce small RNA-seq alignments where multimapped\nsmall RNAs tend to be placed near regions of confidently high density.\n", "version": [ { "downloads": [ "https://github.com/MikeAxtell/butter/archive/v0.3.3.tar.gz" ], "version": "0.3.3" } ] }, "butterflypack": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "arpack-ng", "blas", "c", "cmake", "cxx", "fortran", "gmake", "lapack", "mpi", "ninja", "scalapack", "sed" ], "downloads": [ "https://github.com/liuyangzhuan/ButterflyPACK/archive/vmaster.tar.gz", "https://github.com/liuyangzhuan/ButterflyPACK/archive/v3.2.0.tar.gz", "https://github.com/liuyangzhuan/ButterflyPACK/archive/v2.4.0.tar.gz", "https://github.com/liuyangzhuan/ButterflyPACK/archive/v2.2.2.tar.gz", "https://github.com/liuyangzhuan/ButterflyPACK/archive/v2.2.1.tar.gz", "https://github.com/liuyangzhuan/ButterflyPACK/archive/v2.2.0.tar.gz", "https://github.com/liuyangzhuan/ButterflyPACK/archive/v2.1.1.tar.gz", "https://github.com/liuyangzhuan/ButterflyPACK/archive/v2.1.0.tar.gz", "https://github.com/liuyangzhuan/ButterflyPACK/archive/v2.0.0.tar.gz", "https://github.com/liuyangzhuan/ButterflyPACK/archive/v1.2.1.tar.gz", "https://github.com/liuyangzhuan/ButterflyPACK/archive/v1.2.0.tar.gz", "https://github.com/liuyangzhuan/ButterflyPACK/archive/v1.1.0.tar.gz", "https://github.com/liuyangzhuan/ButterflyPACK/archive/v1.0.3.tar.gz", "https://github.com/liuyangzhuan/ButterflyPACK/archive/v1.0.1.tar.gz", "https://github.com/liuyangzhuan/ButterflyPACK/archive/v1.0.0.tar.gz", "https://github.com/liuyangzhuan/ButterflyPACK.git" ], "homepages": [ "https://github.com/liuyangzhuan/ButterflyPACK" ], "licenses": [ "BSD-3-Clause-LBNL" ], "maintainers": [ "liuyangzhuan" ], "name": "butterflypack", "patches": [ "qopenmp-for-oneapi.patch when @2.1.1 %oneapi", "longline.patch when @1.2.0 %fj", "fjfortran.patch when @1.2.0 %fj", "isnan.patch when @1.2.0 %fj" ], "summary": "ButterflyPACK is a mathematical software for rapidly solving large-scale\ndense linear systems that exhibit off-diagonal rank-deficiency. These\nsystems arise frequently from boundary element methods, or factorization\nphases in finite-difference/finite-element methods. ButterflyPACK relies\non low-rank or butterfly formats under Hierarchical matrix, HODLR or\nother hierarchically nested frameworks to compress, factor and solve the\nlinear system in quasi-linear time. The computationally most intensive\nphase, factorization, is accelerated via randomized linear algebras. The\nbutterfly format, originally inspired by the butterfly data flow in fast\nFourier Transform, is a linear algebra tool well-suited for compressing\nmatrices arising from high-frequency wave equations or highly\noscillatory integral operators.\n", "version": [ { "downloads": [ "https://github.com/liuyangzhuan/ButterflyPACK/archive/v1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://github.com/liuyangzhuan/ButterflyPACK/archive/v1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://github.com/liuyangzhuan/ButterflyPACK/archive/v1.0.3.tar.gz" ], "version": "1.0.3" }, { "downloads": [ "https://github.com/liuyangzhuan/ButterflyPACK/archive/v1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://github.com/liuyangzhuan/ButterflyPACK/archive/v1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://github.com/liuyangzhuan/ButterflyPACK/archive/v1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://github.com/liuyangzhuan/ButterflyPACK/archive/v2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://github.com/liuyangzhuan/ButterflyPACK/archive/v2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://github.com/liuyangzhuan/ButterflyPACK/archive/v2.1.1.tar.gz" ], "version": "2.1.1" }, { "downloads": [ "https://github.com/liuyangzhuan/ButterflyPACK/archive/v2.2.0.tar.gz" ], "version": "2.2.0" }, { "downloads": [ "https://github.com/liuyangzhuan/ButterflyPACK/archive/v2.2.1.tar.gz" ], "version": "2.2.1" }, { "downloads": [ "https://github.com/liuyangzhuan/ButterflyPACK/archive/v2.2.2.tar.gz" ], "version": "2.2.2" }, { "downloads": [ "https://github.com/liuyangzhuan/ButterflyPACK/archive/v2.4.0.tar.gz" ], "version": "2.4.0" }, { "downloads": [ "https://github.com/liuyangzhuan/ButterflyPACK/archive/v3.2.0.tar.gz" ], "version": "3.2.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/liuyangzhuan/ButterflyPACK.git" } ], "version": "master" } ] }, "bwa": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "sse2neon", "zlib-api" ], "downloads": [ "https://github.com/lh3/bwa/archive/refs/tags/v0.7.19.tar.gz", "https://github.com/lh3/bwa/archive/refs/tags/v0.7.18.tar.gz", "https://github.com/lh3/bwa/releases/download/v0.7.17/bwa-0.7.17.tar.bz2", "https://github.com/lh3/bwa/releases/download/v0.7.15/bwa-0.7.15.tar.bz2", "https://github.com/lh3/bwa/releases/download/v0.7.13/bwa-0.7.13.tar.bz2", "https://github.com/lh3/bwa/archive/0.7.12.tar.gz" ], "homepages": [ "https://github.com/lh3/bwa" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "bwa", "patches": [ "bwa_for_aarch64.patch when target=aarch64:", "https://github.com/lh3/bwa/commit/2a1ae7b6f34a96ea25be007ac9d91e57e9d32284.patch?full_index=1 when @0.7.13:0.7.17" ], "summary": "Burrow-Wheeler Aligner for pairwise alignment between DNA sequences.\n", "version": [ { "downloads": [ "https://github.com/lh3/bwa/archive/0.7.12.tar.gz" ], "version": "0.7.12" }, { "downloads": [ "https://github.com/lh3/bwa/releases/download/v0.7.13/bwa-0.7.13.tar.bz2" ], "version": "0.7.13" }, { "downloads": [ "https://github.com/lh3/bwa/releases/download/v0.7.15/bwa-0.7.15.tar.bz2" ], "version": "0.7.15" }, { "downloads": [ "https://github.com/lh3/bwa/releases/download/v0.7.17/bwa-0.7.17.tar.bz2" ], "version": "0.7.17" }, { "downloads": [ "https://github.com/lh3/bwa/archive/refs/tags/v0.7.18.tar.gz" ], "version": "0.7.18" }, { "downloads": [ "https://github.com/lh3/bwa/archive/refs/tags/v0.7.19.tar.gz" ], "version": "0.7.19" } ] }, "bwtool": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libbeato" ], "downloads": [ "https://github.com/CRG-Barcelona/bwtool/archive/1.0.tar.gz" ], "homepages": [ "https://github.com/CRG-Barcelona/bwtool" ], "licenses": [], "maintainers": [], "name": "bwtool", "patches": [], "summary": "bwtool is a command-line utility for bigWig files.\n", "version": [ { "downloads": [ "https://github.com/CRG-Barcelona/bwtool/archive/1.0.tar.gz" ], "version": "1.0" } ] }, "byacc": { "alias": [ { "alias_for": "byacc", "name": "yacc" } ], "categories": [], "dependencies": [ "autoconf", "automake", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "ftp://ftp.invisible-island.net/pub/byacc/byacc-20210808.tgz" ], "homepages": [ "https://invisible-island.net/byacc/byacc.html" ], "licenses": [ "Public-Domain" ], "maintainers": [], "name": "byacc", "patches": [], "summary": "Berkeley Yacc is an LALR(1) parser generator. Berkeley Yacc has been\nmade as compatible as possible with AT&T Yacc. Berkeley Yacc can accept\nany input specification that conforms to the AT&T Yacc documentation.\nSpecifications that take advantage of undocumented features of AT&T Yacc\nwill probably be rejected.\n", "version": [ { "downloads": [ "ftp://ftp.invisible-island.net/pub/byacc/byacc-20210808.tgz" ], "version": "20210808" } ] }, "byfl": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "llvm", "ninja" ], "downloads": [ "https://github.com/lanl/Byfl/archive/refs/tags/v1.8.0.tar.gz" ], "homepages": [ "https://github.com/lanl/Byfl" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "ltang85", "spakin" ], "name": "byfl", "patches": [], "summary": "Compiler-based Application Analysis\n", "version": [ { "downloads": [ "https://github.com/lanl/Byfl/archive/refs/tags/v1.8.0.tar.gz" ], "version": "1.8.0" } ] }, "byobu": { "alias": [], "categories": [], "dependencies": [ "gmake", "gnuconfig", "tmux" ], "downloads": [ 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Cgl uses the abstract class\nOsiSolverInterface (see Osi) to use or communicate with a solver. It\ndoes not directly call a solver.\n", "version": [ { "downloads": [ "https://github.com/coin-or/Cgl/archive/releases/0.60.3.tar.gz" ], "version": "0.60.3" }, { "downloads": [ "https://github.com/coin-or/Cgl/archive/releases/0.60.6.tar.gz" ], "version": "0.60.6" }, { "downloads": [ "https://github.com/coin-or/Cgl/archive/releases/0.60.7.tar.gz" ], "version": "0.60.7" }, { "downloads": [ "https://github.com/coin-or/Cgl/archive/releases/0.60.8.tar.gz" ], "version": "0.60.8" } ] }, "cgm": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "gnuconfig", "mpi" ], "downloads": [ "https://ftp.mcs.anl.gov/pub/fathom/cgm-16.0.tar.gz", "https://ftp.mcs.anl.gov/pub/fathom/cgm-13.1.1.tar.gz", "https://ftp.mcs.anl.gov/pub/fathom/cgm-13.1.0.tar.gz", "https://ftp.mcs.anl.gov/pub/fathom/cgm-13.1.tar.gz" ], "homepages": [ "https://sigma.mcs.anl.gov/cgm-library" ], "licenses": [], "maintainers": [], "name": "cgm", "patches": [], "summary": "The Common Geometry Module, Argonne (CGMA) is a code library which\nprovides geometry functionality used for mesh generation and other\napplications.\n", "version": [ { "downloads": [ "https://ftp.mcs.anl.gov/pub/fathom/cgm-13.1.tar.gz" ], "version": "13.1" }, { "downloads": [ "https://ftp.mcs.anl.gov/pub/fathom/cgm-13.1.0.tar.gz" ], "version": "13.1.0" }, { "downloads": [ "https://ftp.mcs.anl.gov/pub/fathom/cgm-13.1.1.tar.gz" ], "version": "13.1.1" }, { "downloads": [ "https://ftp.mcs.anl.gov/pub/fathom/cgm-16.0.tar.gz" ], "version": "16.0" } ] }, "cgns": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "fortran", "gl", "glu", "gmake", "hdf5", "libsm", "libxmu", "mpi", "ninja", "tcl", "tk" ], "downloads": [ "https://github.com/CGNS/CGNS/archive/vdevelop.tar.gz", "https://github.com/CGNS/CGNS/archive/vmaster.tar.gz", "https://github.com/CGNS/CGNS/archive/v4.5.0.tar.gz", "https://github.com/CGNS/CGNS/archive/v4.4.0.tar.gz", "https://github.com/CGNS/CGNS/archive/v4.3.0.tar.gz", 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[], "summary": "A library and command-line utility that converts image data, including\nanimated GIFs, into graphics formats or ANSI/Unicode character art\nsuitable for display in a terminal.\n", "version": [ { "downloads": [ "https://hpjansson.org/chafa/releases/chafa-1.14.0.tar.xz" ], "version": "1.14.0" }, { "downloads": [ "https://hpjansson.org/chafa/releases/chafa-1.14.1.tar.xz" ], "version": "1.14.1" }, { "downloads": [ "https://hpjansson.org/chafa/releases/chafa-1.14.2.tar.xz" ], "version": "1.14.2" }, { "downloads": [ "https://hpjansson.org/chafa/releases/chafa-1.14.3.tar.xz" ], "version": "1.14.3" }, { "downloads": [ "https://hpjansson.org/chafa/releases/chafa-1.14.4.tar.xz" ], "version": "1.14.4" }, { "downloads": [ "https://hpjansson.org/chafa/releases/chafa-1.14.5.tar.xz" ], "version": "1.14.5" }, { "downloads": [ "https://hpjansson.org/chafa/releases/chafa-1.16.0.tar.xz" ], "version": "1.16.0" }, { "downloads": [ "https://hpjansson.org/chafa/releases/chafa-1.16.1.tar.xz" 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communication-intensive proxy applications that mimic\ncommonly found communication patterns in HPC codes. These codes can be\nused as synthetic codes for benchmarking, or for trace generation using\nScore-P / OTF2.\n", "version": [ { "repositories": [ { "commit": "ee1b13c634943dbe32ac22f5e2154b00eab8c574", "type": "git", "url": "https://github.com/hpcgroup/chatterbug.git" } ], "version": "1.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/hpcgroup/chatterbug.git" } ], "version": "develop" } ] }, "check": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://github.com/libcheck/check/releases/download/0.15.2/check-0.15.2.tar.gz", "https://github.com/libcheck/check/releases/download/0.12.0/check-0.12.0.tar.gz", "https://github.com/libcheck/check/releases/download/0.11.0/check-0.11.0.tar.gz", "https://github.com/libcheck/check/releases/download/0.10.0/check-0.10.0.tar.gz" ], "homepages": [ "https://libcheck.github.io/check/index.html" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "check", "patches": [], "summary": "Check is a unit testing framework for C. It features a simple interface\nfor defining unit tests, putting little in the way of the developer.\nTests are run in a separate address space, so both assertion failures\nand code errors that cause segmentation faults or other signals can be\ncaught. Test results are reportable in the following: Subunit, TAP, XML,\nand a generic logging format.\n", "version": [ { "downloads": [ "https://github.com/libcheck/check/releases/download/0.10.0/check-0.10.0.tar.gz" ], "version": "0.10.0" }, { "downloads": [ "https://github.com/libcheck/check/releases/download/0.11.0/check-0.11.0.tar.gz" ], "version": "0.11.0" }, { "downloads": [ "https://github.com/libcheck/check/releases/download/0.12.0/check-0.12.0.tar.gz" ], "version": "0.12.0" }, { "downloads": [ "https://github.com/libcheck/check/releases/download/0.15.2/check-0.15.2.tar.gz" ], "version": "0.15.2" } ] }, "chemfiles": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/chemfiles/chemfiles/archive/refs/tags/0.10.4.tar.gz", "https://github.com/chemfiles/chemfiles/archive/refs/tags/0.10.3.tar.gz" ], "homepages": [ "https://chemfiles.org" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "RMeli" ], "name": "chemfiles", "patches": [], "summary": "Chemfiles is a library providing a simple and format agnostic interface\nfor reading and writing computational chemistry files: trajectories,\nconfigurations, and topologies.\n", "version": [ { "downloads": [ "https://github.com/chemfiles/chemfiles/archive/refs/tags/0.10.3.tar.gz" ], "version": "0.10.3" }, { "downloads": [ "https://github.com/chemfiles/chemfiles/archive/refs/tags/0.10.4.tar.gz" ], "version": "0.10.4" } ] }, "chexmix": { "alias": [], "categories": [], "dependencies": [ "java", "meme" ], "downloads": [ "https://github.com/seqcode/chexmix/releases/download/v0.52/chexmix.v0.52.public.jar" ], "homepages": [ "http://mahonylab.org/software/chexmix" ], "licenses": [], "maintainers": [], "name": "chexmix", "patches": [], "summary": "ChExMix: the ChIP-exo mixture model. ChExMix aims to characterize\nprotein-DNA binding subtypes in ChIP-exo experiments.\n", "version": [ { "downloads": [ "https://github.com/seqcode/chexmix/releases/download/v0.52/chexmix.v0.52.public.jar" ], "version": "0.52" } ] }, "chez-scheme": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "iconv", "libffi", "libx11", "lz4", "ncurses", "uuid", "zlib-api", "zuo" ], "downloads": [ "https://github.com/cisco/ChezScheme/releases/download/vmain/csvmain.tar.gz", "https://github.com/cisco/ChezScheme/releases/download/v10.1.0/csv10.1.0.tar.gz", "https://github.com/cisco/ChezScheme/releases/download/v10.0.0/csv10.0.0.tar.gz", "https://github.com/cisco/ChezScheme.git" ], "homepages": [ "https://cisco.github.io/ChezScheme/" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "chez-scheme", "patches": [], "summary": "Compiler and run-time system for the language of the Revised^6 Report on\nScheme (R6RS), with numerous extensions.\n", "version": [ { "downloads": [ "https://github.com/cisco/ChezScheme/releases/download/v10.0.0/csv10.0.0.tar.gz" ], "version": "10.0.0" }, { "downloads": [ "https://github.com/cisco/ChezScheme/releases/download/v10.1.0/csv10.1.0.tar.gz" ], "version": "10.1.0" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/cisco/ChezScheme.git" } ], "version": "main" } ] }, "chgcentre": { "alias": [], "categories": [], "dependencies": [ "casacore", "cmake", "cxx", "gmake", "gsl", "ninja" ], "downloads": [ "https://downloads.sourceforge.net/project/wsclean/chgcentre-1.6/chgcentre-1.6.tar.bz2" ], "homepages": [ "https://sourceforge.net/p/wsclean/wiki/chgcentre/" ], "licenses": [], "maintainers": [], "name": "chgcentre", "patches": [ "main.patch" ], "summary": "The chgcentre tool can be used to change the phase centre of a\nmeasurement set.\n", "version": [ { "downloads": [ "https://downloads.sourceforge.net/project/wsclean/chgcentre-1.6/chgcentre-1.6.tar.bz2" ], "version": "1.6" } ] }, "chlorop": { "alias": [], "categories": [], "dependencies": [ "awk" ], "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/chlorop-1.1.Linux.tar.gz" ], "homepages": [ "https://www.cbs.dtu.dk/services/ChloroP/" ], "licenses": [], "maintainers": [], "name": "chlorop", "patches": [ "chlorop.patch" ], "summary": "Chlorop predicts the presence of chloroplast transit peptides in protein\nsequences and the location of potential cTP cleavage sites. You will\nneed to obtain the tarball by visiting the URL and completing the form.\nYou can then either run spack install with the tarball in the directory,\nor add it to a mirror. You will need to set the CHLOROTMP environment\nvariable to the full path of the directory you want chlorop to use as a\ntemporary directory.\n", "version": [ { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/chlorop-1.1.Linux.tar.gz" ], "version": "1.1" } ] }, "chombo": { "alias": [], "categories": [ "ecp", "ecp-apps" ], "dependencies": [ "blas", "c", "cxx", "fortran", "gmake", "hdf5", "lapack", "mpi", "tcsh" ], "downloads": [ "https://bitbucket.org/drhansj/chombo-xsdk.git" ], "homepages": [ "https://commons.lbl.gov/display/chombo" ], "licenses": [ "BSD-3-Clause-LBNL" ], "maintainers": [], "name": "chombo", "patches": [ "hdf5-16api.patch when @3.2", "Make.defs.local.template.patch when @3.2" ], "summary": "The Chombo package provides a set of tools for implementing finite\ndifference and finite-volume methods for the solution of partial\ndifferential equations on block-structured adaptively refined logically\nrectangular (i.e. Cartesian) grids.\n", 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reference\nclocks(e.g. GPS receiver), and manual input using wristwatch and\nkeyboard.\n", "version": [ { "downloads": [ "https://github.com/mlichvar/chrony/archive/3.3.tar.gz" ], "version": "3.3" }, { "downloads": [ "https://github.com/mlichvar/chrony/archive/3.4.tar.gz" ], "version": "3.4" }, { "downloads": [ "https://github.com/mlichvar/chrony/archive/3.5.tar.gz" ], "version": "3.5" }, { "downloads": [ "https://github.com/mlichvar/chrony/archive/3.5.1.tar.gz" ], "version": "3.5.1" } ] }, "chrpath": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://cfhcable.dl.sourceforge.net/project/pisilinux/source/chrpath-0.16.tar.gz" ], "homepages": [ "https://directory.fsf.org/wiki/Chrpath" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "chrpath", "patches": [], "summary": "chrpath: Modifies the dynamic library load path (rpath and runpath) of\ncompiled programs and libraries.\n", "version": [ { "downloads": [ 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of\nmacromolecular complexes and obtain high-resolution 3D reconstructions\nfrom them.\n", "version": [ { "downloads": [ "https://cistem.org/system/tdf/upload3/cistem-1.0.0-beta-source-code.tar.gz?file=1&type=cistem_details&id=37&force=0" ], "version": "1.0.0-beta" } ] }, "citcoms": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "cuda", "cxx", "gmake", "gnuconfig", "hc", "hdf5", "libtool", "m4", "mpi", "zlib-api" ], "downloads": [ "https://github.com/geodynamics/citcoms/releases/download/vmaster/CitcomS-master.tar.gz", "https://github.com/geodynamics/citcoms/releases/download/v3.3.1/CitcomS-3.3.1.tar.gz", "https://github.com/geodynamics/citcoms/releases/download/v3.2.0/CitcomS-3.2.0.tar.gz", "https://github.com/geodynamics/citcoms.git" ], "homepages": [ "https://geodynamics.org/cig/software/citcoms/" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [ "adamjstewart" ], "name": "citcoms", "patches": [], "summary": "CitcomS is a finite element code designed to solve compressible\nthermochemical convection problems relevant to Earth's mantle.\n", "version": [ { "downloads": [ "https://github.com/geodynamics/citcoms/releases/download/v3.2.0/CitcomS-3.2.0.tar.gz" ], "version": "3.2.0" }, { "downloads": [ "https://github.com/geodynamics/citcoms/releases/download/v3.3.1/CitcomS-3.3.1.tar.gz" ], "version": "3.3.1" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/geodynamics/citcoms.git" } ], "version": "master" } ] }, "cityhash": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "gnuconfig" ], "downloads": [ "https://github.com/google/cityhash.git" ], "homepages": [ "https://github.com/google/cityhash" ], "licenses": [], "maintainers": [], "name": "cityhash", "patches": [], "summary": "CityHash, a family of hash functions for strings.\n", "version": [ { "repositories": [ { "commit": "8af9b8c2b889d80c22d6bc26ba0df1afb79a30db", "type": "git", "url": 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"downloads": [ "https://github.com/mauricioaniche/ck/archive/ck-0.5.1.tar.gz" ], "version": "0.5.1" }, { "downloads": [ "https://github.com/mauricioaniche/ck/archive/ck-0.5.2.tar.gz" ], "version": "0.5.2" }, { "downloads": [ "https://github.com/mauricioaniche/ck/archive/ck-0.6.0.tar.gz" ], "version": "0.6.0" }, { "downloads": [ "https://github.com/mauricioaniche/ck/archive/ck-0.6.1.tar.gz" ], "version": "0.6.1" }, { "downloads": [ "https://github.com/mauricioaniche/ck/archive/ck-0.6.2.tar.gz" ], "version": "0.6.2" } ] }, "clamav": { "alias": [], "categories": [], "dependencies": [ "bzip2", "c", "curl", "cxx", "gmake", "gnuconfig", "json-c", "openssl", "pcre", "pkgconfig", "yara", "zlib-api" ], "downloads": [ "https://www.clamav.net/downloads/production/clamav-0.101.2.tar.gz" ], "homepages": [ "https://www.clamav.net/" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "clamav", "patches": [], "summary": "Open source antivirus engine for detecting trojans, viruses, malware 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ASP offers a simple\nand powerful modeling language to describe combinatorial problems as\nlogic programs. The clingo system then takes such a logic program and\ncomputes answer sets representing solutions to the given problem.\n", "version": [ { "downloads": [ "https://github.com/potassco/clingo/archive/v5.4.1.tar.gz" ], "version": "5.4.1" }, { "downloads": [ "https://github.com/potassco/clingo/archive/v5.5.2.tar.gz" ], "version": "5.5.2" }, { "downloads": [ "https://github.com/potassco/clingo/archive/v5.6.2.tar.gz" ], "version": "5.6.2" }, { "downloads": [ "https://github.com/potassco/clingo/archive/v5.7.1.tar.gz" ], "version": "5.7.1" }, { "downloads": [ "https://github.com/potassco/clingo/archive/v5.8.0.tar.gz" ], "version": "5.8.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/potassco/clingo.git" } ], "version": "develop" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/potassco/clingo.git" } ], "version": "master" }, { "repositories": [ { "commit": "2a025667090d71b2c9dce60fe924feb6bde8f667", "type": "git", "url": "https://github.com/potassco/clingo.git" } ], "version": "spack" } ] }, "clingo-bootstrap": { "alias": [], "categories": [ "windows" ], "dependencies": [ "bison", "c", "cmake", "cxx", "doxygen", "gmake", "mimalloc", "ninja", "py-cffi", "python", "python-venv", "re2c", "winbison" ], "downloads": [ "https://github.com/potassco/clingo/archive/vdevelop.tar.gz", "https://github.com/potassco/clingo/archive/vmaster.tar.gz", "https://github.com/potassco/clingo/archive/v5.8.0.tar.gz", "https://github.com/potassco/clingo/archive/v5.7.1.tar.gz", "https://github.com/potassco/clingo/archive/v5.6.2.tar.gz", "https://github.com/potassco/clingo/archive/v5.5.2.tar.gz", "https://github.com/potassco/clingo/archive/v5.4.1.tar.gz", "https://github.com/potassco/clingo/archive/vspack.tar.gz", "https://github.com/potassco/clingo.git" ], "homepages": [ "https://potassco.org/clingo/" ], "licenses": [ "MIT" ], "maintainers": [ "alalazo", "tgamblin" ], "name": "clingo-bootstrap", "patches": [ "python38.patch when @5.3:5.4.0", "size-t.patch when %msvc", "vs2022.patch when %msvc@19.30:", "clingo_msc_1938_native_handle.patch when @:5.7.0 %msvc@19.38:", "mimalloc.patch when @5.5.0:+optimized platform=linux", "mimalloc-pre-5.5.0.patch when @:5.4+optimized platform=linux", "version-script.patch when @spack,5.5:5.6+optimized platform=linux", "version-script-5.4.patch when @5.2:5.4+optimized platform=linux" ], "summary": "Clingo with some options used for bootstrapping\n", "version": [ { "downloads": [ "https://github.com/potassco/clingo/archive/v5.4.1.tar.gz" ], "version": "5.4.1" }, { "downloads": [ "https://github.com/potassco/clingo/archive/v5.5.2.tar.gz" ], "version": "5.5.2" }, { "downloads": [ "https://github.com/potassco/clingo/archive/v5.6.2.tar.gz" ], "version": "5.6.2" }, { "downloads": [ "https://github.com/potassco/clingo/archive/v5.7.1.tar.gz" ], "version": "5.7.1" }, { "downloads": [ "https://github.com/potassco/clingo/archive/v5.8.0.tar.gz" ], "version": "5.8.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/potassco/clingo.git" } ], "version": "develop" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/potassco/clingo.git" } ], "version": "master" }, { "repositories": [ { "commit": "2a025667090d71b2c9dce60fe924feb6bde8f667", "type": "git", "url": "https://github.com/potassco/clingo.git" } ], "version": "spack" } ] }, "cln": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "cxx", "gettext", "gmake", "gmp", "gnuconfig", "libtool", "m4", "texinfo" ], "downloads": [ "https://www.ginac.de/CLN/cln-master.tar.bz2", "https://www.ginac.de/CLN/cln-1.3.7.tar.bz2", "https://www.ginac.de/CLN/cln-1.3.6.tar.bz2", "https://www.ginac.de/CLN/cln-1.3.5.tar.bz2", "https://www.ginac.de/CLN/cln-1.3.4.tar.bz2", "https://www.ginac.de/CLN/cln-1.3.3.tar.bz2", "https://www.ginac.de/CLN/cln-1.3.2.tar.bz2", "https://www.ginac.de/CLN/cln-1.3.1.tar.bz2", "https://www.ginac.de/CLN/cln-1.3.0.tar.bz2", "https://www.ginac.de/CLN/cln-1.2.2.tar.bz2", "https://www.ginac.de/CLN/cln-1.2.1.tar.bz2", "https://www.ginac.de/CLN/cln-1.2.0.tar.bz2", "git://www.ginac.de/cln.git" ], "homepages": [ "https://www.ginac.de/CLN/" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [ "prudhomm" ], "name": "cln", "patches": [], "summary": "CLN is a library for efficient computations with all kinds of numbers in\narbitrary precision. It features number classes for unlimited length\nintegers, rationals, arbitrary precision floating point numbers and much\nmore.\n", "version": [ { "repositories": [ { "commit": "679a0a8927f011fb32411f8a31070c77a9901094", "type": "git", "url": "git://www.ginac.de/cln.git" } ], "version": "1.2.0" }, { "repositories": [ { "commit": "567378ab4cbfd443c3d82d810599860c769251fe", "type": "git", "url": "git://www.ginac.de/cln.git" } ], "version": "1.2.1" }, { "repositories": [ { "commit": "cd3ea9b9889856c6b54266fdb13b54dd3c53931a", "type": "git", "url": "git://www.ginac.de/cln.git" } ], "version": "1.2.2" }, { "repositories": [ { "commit": "8e19c1a9d9ea4116112490d6f43904258b928649", "type": "git", "url": "git://www.ginac.de/cln.git" } ], "version": "1.3.0" }, { "repositories": [ { "commit": "196fee3778494b69063f2a1b018e70de351b336f", "type": "git", "url": "git://www.ginac.de/cln.git" } ], "version": "1.3.1" }, { "repositories": [ { "commit": "00817f7b60a961b860f6d305ac82dd51b70d6ba6", "type": "git", "url": "git://www.ginac.de/cln.git" } ], "version": "1.3.2" }, { "repositories": [ { "commit": "1c9bd61ff0b89b0bf8030e44cb398e8f75112222", "type": "git", "url": "git://www.ginac.de/cln.git" } ], "version": "1.3.3" }, { "repositories": [ { "commit": "9b86a7fc69feb1b288469982001af565f73057eb", "type": "git", "url": "git://www.ginac.de/cln.git" } ], "version": "1.3.4" }, { "repositories": [ { "commit": "b221c033c082b462455502b7e63702a9c466aede", "type": "git", "url": "git://www.ginac.de/cln.git" } ], "version": "1.3.5" }, { "repositories": [ { "commit": "d4ba1cc869be2c647c4ab48ac571b1fc9c2021a9", "type": "git", "url": "git://www.ginac.de/cln.git" } ], "version": "1.3.6" }, { "repositories": [ { "commit": "bc36e1e941c9296f37198c3125ac7f2b2ca4f48b", "type": "git", "url": "git://www.ginac.de/cln.git" } ], "version": "1.3.7" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "git://www.ginac.de/cln.git" } ], "version": "master" } ] }, "cloc": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "fortran", "perl" ], "downloads": [ "https://github.com/AlDanial/cloc/archive/v2.00.tar.gz", "https://github.com/AlDanial/cloc/archive/v1.96.1.tar.gz", "https://github.com/AlDanial/cloc/archive/v1.90.tar.gz", "https://github.com/AlDanial/cloc/archive/v1.84.tar.gz", "https://github.com/AlDanial/cloc/archive/v1.80.tar.gz", "https://github.com/AlDanial/cloc/archive/v1.74.tar.gz" ], "homepages": [ "https://github.com/AlDanial/cloc/" ], "licenses": [ "GPL-2.0" ], "maintainers": [], "name": "cloc", "patches": [], "summary": "Count, or compute differences of, physical lines of source code in the\ngiven files (may be archives such as compressed tarballs or zip files)\nand/or recursively below the given directories.\n", "version": [ { "downloads": [ "https://github.com/AlDanial/cloc/archive/v1.74.tar.gz" ], "version": "1.74" }, { "downloads": [ "https://github.com/AlDanial/cloc/archive/v1.80.tar.gz" ], "version": "1.80" }, { "downloads": [ "https://github.com/AlDanial/cloc/archive/v1.84.tar.gz" ], "version": "1.84" }, { "downloads": [ "https://github.com/AlDanial/cloc/archive/v1.90.tar.gz" ], "version": "1.90" }, { "downloads": [ "https://github.com/AlDanial/cloc/archive/v1.96.1.tar.gz" ], "version": "1.96.1" }, { "downloads": [ "https://github.com/AlDanial/cloc/archive/v2.00.tar.gz" ], "version": "2.00" } ] }, "cloog": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "gmp", "isl" ], "downloads": [ "http://www.bastoul.net/cloog/pages/download/count.php3?url=./cloog-0.18.4.tar.gz", "http://www.bastoul.net/cloog/pages/download/count.php3?url=./cloog-0.18.1.tar.gz", "http://www.bastoul.net/cloog/pages/download/count.php3?url=./cloog-0.18.0.tar.gz", "http://www.bastoul.net/cloog/pages/download/count.php3?url=./cloog-0.17.0.tar.gz" ], "homepages": [ "http://www.cloog.org" ], "licenses": [], "maintainers": [], "name": "cloog", "patches": [], "summary": "CLooG is a free software and library to generate code for scanning\nZ-polyhedra. That is, it finds a code (e.g. in C, FORTRAN...) that\nreaches each integral point of one or more parameterized polyhedra.\n", "version": [ { "downloads": [ "http://www.bastoul.net/cloog/pages/download/count.php3?url=./cloog-0.17.0.tar.gz" ], "version": "0.17.0" }, { "downloads": [ "http://www.bastoul.net/cloog/pages/download/count.php3?url=./cloog-0.18.0.tar.gz" ], "version": "0.18.0" }, { "downloads": [ "http://www.bastoul.net/cloog/pages/download/count.php3?url=./cloog-0.18.1.tar.gz" ], "version": "0.18.1" }, { "downloads": [ "http://www.bastoul.net/cloog/pages/download/count.php3?url=./cloog-0.18.4.tar.gz" ], "version": "0.18.4" } ] }, "cloverleaf": { "alias": [], "categories": [ "proxy-app" ], "dependencies": [ "c", "cuda", "cxx", "fortran", "gmake", "mpi" ], "downloads": [ "https://downloads.mantevo.org/releaseTarballs/miniapps/CloverLeaf/CloverLeaf-master.tar.gz", "https://downloads.mantevo.org/releaseTarballs/miniapps/CloverLeaf/CloverLeaf-1.1.tar.gz", "https://github.com/UK-MAC/CloverLeaf.git" ], "homepages": [ "https://uk-mac.github.io/CloverLeaf" ], "licenses": [ "LGPL-3.0-or-later" ], "maintainers": [], "name": "cloverleaf", "patches": [], "summary": "Proxy Application. CloverLeaf is a miniapp that solves the compressible\nEuler equations on a Cartesian grid, using an explicit, second-order\naccurate method.\n", "version": [ { "downloads": [ "https://downloads.mantevo.org/releaseTarballs/miniapps/CloverLeaf/CloverLeaf-1.1.tar.gz" ], "version": "1.1" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/UK-MAC/CloverLeaf.git" } ], "version": "master" } ] }, "cloverleaf-ref": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "mpi" ], "downloads": [ "https://github.com/UK-MAC/CloverLeaf_ref/archive/refs/tags/vmaster.tar.gz", "https://github.com/UK-MAC/CloverLeaf_ref/archive/refs/tags/v1.3.tar.gz", "https://github.com/UK-MAC/CloverLeaf_ref/archive/refs/tags/v1.1.tar.gz", "https://github.com/UK-MAC/CloverLeaf_ref.git" ], "homepages": [ "https://github.com/UK-MAC/CloverLeaf_ref" ], "licenses": [], "maintainers": [ "amd-toolchain-support" ], "name": "cloverleaf-ref", "patches": [], "summary": "Proxy Application. CloverLeaf_ref is a miniapp that solves the\ncompressible Euler equations on a Cartesian grid, using an explicit,\nsecond-order accurate method.\n", "version": [ { "downloads": [ "https://github.com/UK-MAC/CloverLeaf_ref/archive/refs/tags/v1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ "https://github.com/UK-MAC/CloverLeaf_ref/archive/refs/tags/v1.3.tar.gz" ], "version": "1.3" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/UK-MAC/CloverLeaf_ref.git" } ], "version": "master" } ] }, "cloverleaf3d": { "alias": [], "categories": [ "proxy-app" ], "dependencies": [ "c", "cxx", "fortran", "gmake", "mpi" ], "downloads": [ "https://downloads.mantevo.org/releaseTarballs/miniapps/CloverLeaf3D/CloverLeaf3D-1.0.tar.gz" ], "homepages": [ "https://uk-mac.github.io/CloverLeaf3D/" ], "licenses": [ "LGPL-3.0-or-later" ], "maintainers": [ "s1913388" ], "name": "cloverleaf3d", "patches": [], "summary": "Proxy Application. CloverLeaf3D is 3D version of the CloverLeaf mini-\napp. CloverLeaf is a mini-app that solves the compressible Euler\nequations on a Cartesian grid, using an explicit, second-order accurate\nmethod.\n", "version": [ { "downloads": [ "https://downloads.mantevo.org/releaseTarballs/miniapps/CloverLeaf3D/CloverLeaf3D-1.0.tar.gz" ], "version": "1.0" } ] }, "clp": { "alias": [], "categories": [], "dependencies": [ "c", "coinutils", "cxx", "gmake", "gnuconfig", "osi", "pkgconfig" ], "downloads": [ "https://github.com/coin-or/Clp/archive/releases/1.17.9.tar.gz", "https://github.com/coin-or/Clp/archive/releases/1.17.7.tar.gz", "https://github.com/coin-or/Clp/archive/releases/1.17.6.tar.gz", "https://github.com/coin-or/Clp/archive/releases/1.17.4.tar.gz", "https://github.com/coin-or/Clp/archive/releases/1.16.11.tar.gz" ], "homepages": [ "https://projects.coin-or.org/Clp" ], "licenses": [ "EPL-2.0" ], "maintainers": [], "name": "clp", "patches": [], "summary": "Clp (Coin-or linear programming) is 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graph.\n", "version": [ { "downloads": [ "https://github.com/Microsoft/CNTK/archive/v2.0.tar.gz" ], "version": "2.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/Microsoft/CNTK.git" } ], "version": "master" } ] }, "cntk1bitsgd": { "alias": [], "categories": [], "dependencies": [], "downloads": [ "https://github.com/CNTK-components/CNTK1bitSGD.git" ], "homepages": [ "https://github.com/CNTK-components/CNTK1bitSGD" ], "licenses": [], "maintainers": [], "name": "cntk1bitsgd", "patches": [], "summary": "CNTK1bitSGD is the header-only 1-bit stochastic gradient descent (1bit-\nSGD) library for the Computational Network Toolkit (CNTK).\n", "version": [ { "repositories": [ { "commit": "c8b77d6e325a4786547b27624890276c1483aed1", "type": "git", "url": "https://github.com/CNTK-components/CNTK1bitSGD.git" } ], "version": "c8b77d" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": 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The main application is low bandwidth HF/VHF\ndigital radio.\n", "version": [ { "downloads": [ "https://github.com/drowe67/codec2-dev/archive/refs/tags/v0.9.2.tar.gz" ], "version": "0.9.2" }, { "downloads": [ "https://github.com/drowe67/codec2-dev/archive/refs/tags/v1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://github.com/drowe67/codec2-dev/archive/refs/tags/v1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://github.com/drowe67/codec2/archive/refs/tags/1.2.0.tar.gz" ], "version": "1.2.0" } ] }, "codecov": { "alias": [], "categories": [], "dependencies": [], "downloads": [ "https://github.com/codecov/uploader/releases/download/v0.4.1/codecov-linux" ], "homepages": [ "https://codecov.io" ], "licenses": [], "maintainers": [], "name": "codecov", "patches": [], "summary": "Codecov uploads coverage reports to Codecov for processing.\n", "version": [ { "downloads": [ "https://github.com/codecov/uploader/releases/download/v0.4.1/codecov-linux" ], "version": "0.4.1" } ] }, "codes": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "bison", "flex", "gmake", "gnuconfig", "libtool", "m4", "mpi", "pkgconfig", "ross", "sst-dumpi" ], "downloads": [ "https://xgitlab.cels.anl.gov/codes/codes.git" ], "homepages": [ "https://www.mcs.anl.gov/projects/codes" ], "licenses": [], "maintainers": [], "name": "codes", "patches": [ "codes-1.0.0.patch" ], "summary": "CO-Design of multi-layer Exascale Storage (CODES) simulation framework\n", "version": [ { "repositories": [ { "tag": "1.0.0", "type": "git", "url": "https://xgitlab.cels.anl.gov/codes/codes.git" } ], "version": "1.0.0" }, { "repositories": [ { "tag": "1.1.0", "type": "git", "url": "https://xgitlab.cels.anl.gov/codes/codes.git" } ], "version": "1.1.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://xgitlab.cels.anl.gov/codes/codes.git" } ], "version": "develop" } ] }, "codipack": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/SciCompKL/CoDiPack/archive/refs/tags/v2.2.0.tar.gz", "https://github.com/SciCompKL/CoDiPack/archive/refs/tags/v2.1.0.tar.gz", "https://github.com/SciCompKL/CoDiPack/archive/refs/tags/v2.0.2.tar.gz", "https://github.com/SciCompKL/CoDiPack/archive/refs/tags/v1.9.3.tar.gz", "https://github.com/SciCompKL/CoDiPack/archive/refs/tags/vopenmp.tar.gz", "https://github.com/SciCompKL/CoDiPack.git" ], "homepages": [ "https://www.scicomp.uni-kl.de/software/codi/" ], "licenses": [], "maintainers": [], "name": "codipack", "patches": [], "summary": "CoDiPack is a C++-library that enables the computation of gradients in\ncomputer programs using Algorithmic Differentiation. It is based on the\nOperator Overloading approach and uses static polymorphism and\nexpression templates, resulting in an extremely fast evaluation of\nadjoints or forward derivatives. It is specifically designed with HPC\napplications in mind.\n", "version": [ { "downloads": [ "https://github.com/SciCompKL/CoDiPack/archive/refs/tags/v1.9.3.tar.gz" ], "version": "1.9.3" }, { "downloads": [ "https://github.com/SciCompKL/CoDiPack/archive/refs/tags/v2.0.2.tar.gz" ], "version": "2.0.2" }, { "downloads": [ "https://github.com/SciCompKL/CoDiPack/archive/refs/tags/v2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://github.com/SciCompKL/CoDiPack/archive/refs/tags/v2.2.0.tar.gz" ], "version": "2.2.0" }, { "repositories": [ { "branch": "experimentalOpenMPSupport", "type": "git", "url": "https://github.com/SciCompKL/CoDiPack.git" } ], "version": "openmp" } ] }, "coevp": { "alias": [], "categories": [ "proxy-app" ], "dependencies": [ "c", "cxx", "flann", "fortran", "gmake", "lapack", "mpi", "silo" ], "downloads": [ "https://github.com/exmatex/CoEVP.git" ], "homepages": [ "https://github.com/exmatex/CoEVP" ], "licenses": [], "maintainers": [], "name": "coevp", "patches": [], "summary": "CoEVP is a scale-bridging proxy application for embedded viscoplasticity\napplications. It is created and maintained by The Exascale Co-Design\nCenter for Materials in Extreme Environments (ExMatEx). The code is\nintended to serve as a vehicle for co-design by allowing others to\nextend and/or reimplement it as needed to test performance of new\narchitectures, programming models, etc. Due to the size and complexity\nof the studied models, as well as restrictions on distribution, the\ncurrently available LULESH proxy application provides the coarse-scale\nmodel implementation and the ASPA proxy application provides the\nadaptive sampling support.\n", "version": [ { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/exmatex/CoEVP.git" } ], "version": "develop" } ] }, "cohmm": { "alias": [], "categories": [ "proxy-app" ], "dependencies": [ "c", "gmake", "gnuplot" ], "downloads": [ "https://github.com/exmatex/CoHMM.git" ], "homepages": [ "http://www.exmatex.org/cohmm.html" ], "licenses": [], "maintainers": [], "name": "cohmm", "patches": [], "summary": "An anticipated important use-case for next-generation supercomputing is\nmultiscale modeling, in which continuum equations for large-scale\nmaterial deformation are augmented with high-fidelity, fine-scale\nsimulations that provide constitutive data on demand.\n", "version": [ { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/exmatex/CoHMM.git" } ], "version": "develop" } ] }, "cohomcalg": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake" ], "downloads": [ "https://github.com/BenjaminJurke/cohomCalg" ], "homepages": [ "https://github.com/BenjaminJurke/cohomCalg" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [ "d-torrance" ], "name": "cohomcalg", "patches": [ "fix-literal-suffix.patch" ], "summary": "cohomCalg is a C++ software package for computing the dimensions of line\nbundle-valued sheaf cohomology groups on toric varieties. It implements\nefficient algorithms from algebraic geometry to support applications in\nboth mathematics and theoretical physics.\n", "version": [ { "repositories": [ { "commit": "c663c8e37cceab3cc0b2bcc57d35cb895930ab1f", "type": "git", "url": "https://github.com/BenjaminJurke/cohomCalg" } ], "version": "0.32" } ] }, "coin3d": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "cmake", "cxx", "doxygen", "gl", "glu", "gmake", "gnuconfig", "libice", "libsm", "libxau", "libxcb", "libxext", "ninja", "perl", "uuid" ], "downloads": [ "https://github.com/coin3d/coin/releases/download/Coin-4.0.0/coin-4.0.0-src.tar.gz" ], "homepages": [ "https://github.com/coin3d/coin" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "coin3d", "patches": [ "https://github.com/coin3d/coin/commit/962e613609ba93301999f83e283b7f489dfac503.patch?full_index=1 when @4.0.0", "https://github.com/coin3d/coin/commit/9a36b15d66c5e340cd8695415ce5867ad07ee2bb.patch?full_index=1 when @4.0.0", "https://github.com/coin3d/coin/commit/58a1b4c3e968f96d3a2091fa5cb625f360ce6811.patch?full_index=1 when @4.0.0" ], "summary": "Coin is an OpenGL-based, 3D graphics library that has its roots in the\nOpen Inventor 2.1 API, which Coin still is compatible with.\n", "version": [ { "downloads": [ "https://github.com/coin3d/coin/archive/Coin-2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://github.com/coin3d/coin/archive/Coin-3.0.0.tar.gz" ], "version": "3.0.0" }, { "downloads": [ "https://github.com/coin3d/coin/archive/Coin-3.1.0.tar.gz" ], "version": "3.1.0" }, { "downloads": [ "https://github.com/coin3d/coin/releases/download/Coin-4.0.0/coin-4.0.0-src.tar.gz" ], "version": "4.0.0" }, { "downloads": [ "https://github.com/coin3d/coin/releases/download/v4.0.4/coin-4.0.4-src.tar.gz" ], "version": "4.0.4" } ] }, "coinhsl": { "alias": [], "categories": [], "dependencies": [ "blas", "gmake", "gnuconfig", "lapack", "meson", "metis", "ninja", "pkgconfig" ], "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/coinhsl-2024.05.15.tar.gz", "file:///home/runner/work/packages.spack.io/packages.spack.io/coinhsl-2019.05.21.tar.gz", "file:///home/runner/work/packages.spack.io/packages.spack.io/coinhsl-2015.06.23.tar.gz", "file:///home/runner/work/packages.spack.io/packages.spack.io/coinhsl-2014.01.17.tar.gz", "file:///home/runner/work/packages.spack.io/packages.spack.io/coinhsl-2014.01.10.tar.gz", "file:///home/runner/work/packages.spack.io/packages.spack.io/coinhsl-archive-2024.05.15.tar.gz" ], "homepages": [ "https://www.hsl.rl.ac.uk/ipopt/" ], "licenses": [], "maintainers": [ "AndrewLister-STFC" ], "name": "coinhsl", "patches": [], "summary": "CoinHSL is a collection of linear algebra libraries (KB22, MA27, MA28,\nMA54, MA57, MA64, MA77, MA86, MA97, MC19, MC34, MC64, MC68, MC69, MC78,\nMC80, OF01, ZB01, ZB11) bundled for use with IPOPT and other\napplications that use these HSL routines. Note: CoinHSL is licensed\nsoftware. You will need to request a license from Research Councils UK\nand download a .tar.gz archive of CoinHSL yourself. Spack will search\nyour current directory for the download file. Alternatively, add this\nfile to a mirror so that Spack can find it. For instructions on how to\nset up a mirror, see https://spack.readthedocs.io/en/latest/mirrors.html\n", "version": [ { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/coinhsl-2014.01.10.tar.gz" ], "version": "2014.01.10" }, { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/coinhsl-2014.01.17.tar.gz" ], "version": "2014.01.17" }, { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/coinhsl-2015.06.23.tar.gz" ], "version": "2015.06.23" }, { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/coinhsl-2019.05.21.tar.gz" ], "version": "2019.05.21" }, { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/coinhsl-2024.05.15.tar.gz" ], "version": "2024.05.15" }, { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/coinhsl-archive-2024.05.15.tar.gz" ], "version": "archive-2024.05.15" } ] }, "coinutils": { "alias": [], "categories": [], 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"maintainers": [], "name": "colm", "patches": [], "summary": "Colm Programming Language Colm is a programming language designed for\nthe analysis and transformation of computer languages. Colm is\ninfluenced primarily by TXL. It is in the family of program\ntransformation languages.\n", "version": [ { "downloads": [ "https://www.colm.net/files/colm/colm-0.12.0.tar.gz" ], "version": "0.12.0" } ] }, "colordiff": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://www.colordiff.org/archive/colordiff-1.0.21.tar.gz", "https://www.colordiff.org/archive/colordiff-1.0.19.tar.gz", "https://www.colordiff.org/archive/colordiff-1.0.18.tar.gz" ], "homepages": [ "https://www.colordiff.org" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "colordiff", "patches": [], "summary": "Colorful diff utility.\n", "version": [ { "downloads": [ "https://www.colordiff.org/archive/colordiff-1.0.18.tar.gz" ], "version": "1.0.18" }, { "downloads": [ "https://www.colordiff.org/archive/colordiff-1.0.19.tar.gz" ], "version": "1.0.19" }, { "downloads": [ "https://www.colordiff.org/archive/colordiff-1.0.21.tar.gz" ], "version": "1.0.21" } ] }, "comd": { "alias": [], "categories": [ "proxy-app" ], "dependencies": [ "c", "gmake", "graphviz", "mpi" ], "downloads": [ "https://github.com/ECP-copa/CoMD/archive/vdevelop.tar.gz", "https://github.com/ECP-copa/CoMD/archive/v1.1.tar.gz", "https://github.com/ECP-copa/CoMD.git" ], "homepages": [ "http://www.exmatex.org/comd.html" ], "licenses": [], "maintainers": [], "name": "comd", "patches": [], "summary": "CoMD is a reference implementation of classical molecular dynamics\nalgorithms and workloads as used in materials science. It is created and\nmaintained by The Exascale Co-Design Center for Materials in Extreme\nEnvironments (ExMatEx). The code is intended to serve as a vehicle for\nco-design by allowing others to extend and/or reimplement it as needed\nto test performance of new architectures, programming models, etc. New\nversions of CoMD will be released to incorporate the lessons learned\nfrom the co-design process.\n", "version": [ { "downloads": [ "https://github.com/ECP-copa/CoMD/archive/v1.1.tar.gz" ], "version": "1.1" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/ECP-copa/CoMD.git" } ], "version": "develop" } ] }, "comgr": { "alias": [], "categories": [ "rocm", "detectable" ], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "llvm-amdgpu", "ncurses", "ninja", "rocm-cmake", "rocm-core", "z3", "zlib-api" ], "downloads": [ "https://github.com/ROCm/llvm-project.git" ], "homepages": [ "https://github.com/ROCm/llvm-project" ], "licenses": [ "NCSA" ], "maintainers": [ "afzpatel", "haampie", "renjithravindrankannath", "srekolam" ], "name": "comgr", "patches": [], "summary": "This provides various Lightning Compiler related services. 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Apache Commons Lang provides these\nextra methods. Lang provides a host of helper utilities for the\njava.lang API, notably String manipulation methods, basic numerical\nmethods, object reflection, concurrency, creation and serialization and\nSystem properties. Additionally it contains basic enhancements to\njava.util.Date and a series of utilities dedicated to help with building\nmethods, such as hashCode, toString and equals.\n", "version": [ { "downloads": [ "https://archive.apache.org/dist/commons/lang/binaries/commons-lang-2.4-bin.tar.gz" ], "version": "2.4" }, { "downloads": [ "https://archive.apache.org/dist/commons/lang/binaries/commons-lang-2.6-bin.tar.gz" ], "version": "2.6" } ] }, "commons-lang3": { "alias": [], "categories": [], "dependencies": [ "java", "openjdk" ], "downloads": [ "https://archive.apache.org/dist/commons/lang/binaries/commons-lang3-3.14.0-bin.tar.gz", "https://archive.apache.org/dist/commons/lang/binaries/commons-lang3-3.12.0-bin.tar.gz", "https://archive.apache.org/dist/commons/lang/binaries/commons-lang3-3.7-bin.tar.gz" ], "homepages": [ "https://commons.apache.org/proper/commons-lang/" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "commons-lang3", "patches": [], "summary": "The standard Java libraries fail to provide enough methods for\nmanipulation of its core classes. Apache Commons Lang provides these\nextra methods. Lang provides a host of helper utilities for the\njava.lang API, notably String manipulation methods, basic numerical\nmethods, object reflection, concurrency, creation and serialization and\nSystem properties. Additionally it contains basic enhancements to\njava.util.Date and a series of utilities dedicated to help with building\nmethods, such as hashCode, toString and equals.\n", "version": [ { "downloads": [ "https://archive.apache.org/dist/commons/lang/binaries/commons-lang3-3.12.0-bin.tar.gz" ], "version": "3.12.0" }, { "downloads": [ "https://archive.apache.org/dist/commons/lang/binaries/commons-lang3-3.14.0-bin.tar.gz" ], "version": "3.14.0" }, { "downloads": [ "https://archive.apache.org/dist/commons/lang/binaries/commons-lang3-3.7-bin.tar.gz" ], "version": "3.7" } ] }, "commons-logging": { "alias": [], "categories": [], "dependencies": [ "java", "openjdk" ], "downloads": [ "https://archive.apache.org/dist/commons/logging/binaries/commons-logging-1.3.0-bin.tar.gz", "https://archive.apache.org/dist/commons/logging/binaries/commons-logging-1.2-bin.tar.gz", "https://archive.apache.org/dist/commons/logging/binaries/commons-logging-1.1.3-bin.tar.gz", "https://archive.apache.org/dist/commons/logging/binaries/commons-logging-1.1.1-bin.tar.gz" ], "homepages": [ "https://commons.apache.org/proper/commons-logging/" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "commons-logging", "patches": [], "summary": "When writing a library it is very useful to log information. However\nthere are many logging implementations out there, and a library cannot\nimpose the use of a particular one on the overall application that the\nlibrary is a part of. The Logging package is an ultra-thin bridge\nbetween different logging implementations. A library that uses the\ncommons-logging API can be used with any logging implementation at\nruntime. Commons-logging comes with support for a number of popular\nlogging implementations, and writing adapters for others is a reasonably\nsimple task.\n", "version": [ { "downloads": [ "https://archive.apache.org/dist/commons/logging/binaries/commons-logging-1.1.1-bin.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://archive.apache.org/dist/commons/logging/binaries/commons-logging-1.1.3-bin.tar.gz" ], "version": "1.1.3" }, { "downloads": [ "https://archive.apache.org/dist/commons/logging/binaries/commons-logging-1.2-bin.tar.gz" ], "version": "1.2" }, { "downloads": [ "https://archive.apache.org/dist/commons/logging/binaries/commons-logging-1.3.0-bin.tar.gz" ], "version": "1.3.0" } ] }, "compadre": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "kokkos-kernels", "mpi", "ninja" ], "downloads": [ "https://github.com/sandialabs/compadre/archive/vmaster.tar.gz", "https://github.com/sandialabs/compadre/archive/v1.6.2.tar.gz", "https://github.com/sandialabs/compadre/archive/v1.6.0.tar.gz", "https://github.com/sandialabs/compadre/archive/v1.5.0.tar.gz", "https://github.com/sandialabs/compadre/archive/v1.4.1.tar.gz", "https://github.com/sandialabs/compadre/archive/v1.3.0.tar.gz", "https://github.com/sandialabs/compadre.git" ], "homepages": [ "https://github.com/sandialabs/compadre" ], "licenses": [], "maintainers": [ "kuberry" ], "name": "compadre", "patches": [ "https://github.com/sandialabs/Compadre/commit/af91a6ee3831dc951445df76053ec6315c58cb45.patch?full_index=1 when @1.5.0" ], "summary": "The Compadre Toolkit provides a performance portable solution for the\nparallel evaluation of computationally dense kernels. The toolkit\nspecifically targets the Generalized Moving Least Squares (GMLS)\napproach, which requires the inversion of small dense matrices. The\nresult is a set of weights that provide the information needed for remap\nor entries that constitute the rows of some globally sparse matrix.\n", "version": [ { "downloads": [ "https://github.com/sandialabs/compadre/archive/v1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://github.com/sandialabs/compadre/archive/v1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://github.com/sandialabs/compadre/archive/v1.5.0.tar.gz" ], "version": "1.5.0" }, { "downloads": [ "https://github.com/sandialabs/compadre/archive/v1.6.0.tar.gz" ], "version": "1.6.0" }, { "downloads": [ "https://github.com/sandialabs/compadre/archive/v1.6.2.tar.gz" ], "version": "1.6.2" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/sandialabs/compadre.git" } ], "version": "master" } ] }, "compiler-wrapper": { "alias": [], "categories": [ "runtime" ], "dependencies": [], "downloads": [ "file:////home/runner/.spack/package_repos/fncqgg4/repos/spack_repo/builtin/packages/compiler_wrapper/cc.sh" ], "homepages": [ "https://github.com/spack/spack" ], "licenses": [ "Apache-2.0 OR MIT" ], "maintainers": [], "name": "compiler-wrapper", "patches": [], "summary": "Spack compiler wrapper script. Compiler commands go through this\ncompiler wrapper in Spack builds. The compiler wrapper is a thin layer\naround the standard compilers. It enables several key pieces of\nfunctionality: 1. It allows Spack to swap compilers into and out of\nbuilds easily. 2. It adds several options to the compile line so that\nspack packages can find their dependencies at build time and run time:\n-I and/or -isystem arguments for dependency /include directories. -L\narguments for dependency /lib directories. -Wl,-rpath arguments for\ndependency /lib directories. 3. It provides a mechanism to inject flags\nfrom specs\n", "version": [ { "downloads": [ "file:////home/runner/.spack/package_repos/fncqgg4/repos/spack_repo/builtin/packages/compiler_wrapper/cc.sh" ], "version": "1.0" } ] }, "composable-kernel": { "alias": [], "categories": [ "rocm" ], "dependencies": [ "bzip2", "cmake", "cxx", "gmake", "half", "hip", "llvm-amdgpu", "ncurses", "ninja", "pkgconfig", "python", "rocm-cmake", "sqlite", "z3", "zlib" ], "downloads": [ "https://github.com/ROCm/composable_kernel/archive/refs/tags/rocm-7.0.2.tar.gz", "https://github.com/ROCm/composable_kernel/archive/refs/tags/rocm-7.0.0.tar.gz", "https://github.com/ROCm/composable_kernel/archive/refs/tags/rocm-6.4.3.tar.gz", "https://github.com/ROCm/composable_kernel/archive/refs/tags/rocm-6.4.2.tar.gz", "https://github.com/ROCm/composable_kernel/archive/refs/tags/rocm-6.4.1.tar.gz", "https://github.com/ROCm/composable_kernel/archive/refs/tags/rocm-6.4.0.tar.gz", 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"https://github.com/ROCm/composable_kernel/archive/refs/tags/rocm-5.7.1.tar.gz", "https://github.com/ROCm/composable_kernel/archive/refs/tags/rocm-5.7.0.tar.gz", "https://github.com/ROCm/composable_kernel.git" ], "homepages": [ "https://github.com/ROCm/composable_kernel" ], "licenses": [ "MIT" ], "maintainers": [ "afzpatel", "srekolam" ], "name": "composable-kernel", "patches": [ "0001-mark-kernels-maybe-unused.patch when @6.2" ], "summary": "Composable Kernel: Performance Portable Programming Model for Machine\nLearning Tensor Operators.\n", "version": [ { "downloads": [ "https://github.com/ROCm/composable_kernel/archive/refs/tags/rocm-5.7.0.tar.gz" ], "version": "5.7.0" }, { "downloads": [ "https://github.com/ROCm/composable_kernel/archive/refs/tags/rocm-5.7.1.tar.gz" ], "version": "5.7.1" }, { "downloads": [ "https://github.com/ROCm/composable_kernel/archive/refs/tags/rocm-6.0.0.tar.gz" ], "version": "6.0.0" }, { "downloads": [ 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This package contains header files and\ndocumentation for the composite extension. Library and server\nimplementations are separate.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/proto/compositeproto-0.4.2.tar.gz" ], "version": "0.4.2" } ] }, "composyx": { "alias": [], "categories": [], "dependencies": [ "armadillo", "arpack-ng", "blaspp", "c", "cmake", "cxx", "eigen", "fabulous", "fortran", "gmake", "lapackpp", "mpi", "ninja", "paddle", "pastix", "pkgconfig" ], "downloads": [ "https://gitlab.inria.fr/api/v4/projects/52455/packages/generic/source/vmain/composyx-main.tar.gz", "https://gitlab.inria.fr/api/v4/projects/52455/packages/generic/source/v1.4.0/composyx-1.4.0.tar.gz", "https://gitlab.inria.fr/api/v4/projects/52455/packages/generic/source/v1.3.1/composyx-1.3.1.tar.gz", "https://gitlab.inria.fr/api/v4/projects/52455/packages/generic/source/v1.0.1/composyx-1.0.1.tar.gz", "https://gitlab.inria.fr/composyx/composyx.git" ], "homepages": [ "https://gitlab.inria.fr/composyx/composyx" ], "licenses": [], "maintainers": [ "fpruvost" ], "name": "composyx", "patches": [], "summary": "a Massively Parallel Hybrid Solver in C++\n", "version": [ { "downloads": [ "https://gitlab.inria.fr/api/v4/projects/52455/packages/generic/source/v1.0.1/composyx-1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://gitlab.inria.fr/api/v4/projects/52455/packages/generic/source/v1.3.1/composyx-1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://gitlab.inria.fr/api/v4/projects/52455/packages/generic/source/v1.4.0/composyx-1.4.0.tar.gz" ], "version": "1.4.0" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://gitlab.inria.fr/composyx/composyx.git" } ], "version": "main" } ] }, "conda4aarch64": { "alias": [], "categories": [], "dependencies": [], "downloads": [ "https://github.com/jjhelmus/conda4aarch64/releases/download/1.0.0/c4aarch64_installer-1.0.0-Linux-aarch64.sh" ], "homepages": [ "https://anaconda.org/c4aarch64/" ], "licenses": [], "maintainers": [], "name": "conda4aarch64", "patches": [], "summary": "Conda for aarch64\n", "version": [ { "downloads": [ "https://github.com/jjhelmus/conda4aarch64/releases/download/1.0.0/c4aarch64_installer-1.0.0-Linux-aarch64.sh" ], "version": "1.0.0" } ] }, "conduit": { "alias": [], "categories": [ "radiuss", "e4s" ], "dependencies": [ "adios", "blt", "c", "caliper", "cmake", "cxx", "doxygen", "fortran", "gmake", "h5z-zfp", "hdf5", "metis", "mpi", "ninja", "parmetis", "py-mpi4py", "py-numpy", "py-pip", "py-setuptools", "py-sphinx", "py-sphinx-rtd-theme", "py-wheel", "python", "python-venv", "silo", "zfp" ], "downloads": [ "https://github.com/LLNL/conduit/releases/download/vdevelop/conduit-vdevelop-src-with-blt.tar.gz", "https://github.com/LLNL/conduit/releases/download/vmaster/conduit-vmaster-src-with-blt.tar.gz", "https://github.com/LLNL/conduit/releases/download/v0.9.5/conduit-v0.9.5-src-with-blt.tar.gz", "https://github.com/LLNL/conduit/releases/download/v0.9.4/conduit-v0.9.4-src-with-blt.tar.gz", 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It is used for data\ncoupling between packages in-core, serialization, and I/O tasks.\n", "version": [ { "downloads": [ "https://github.com/LLNL/conduit/archive/v0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://github.com/LLNL/conduit/archive/v0.2.1.tar.gz" ], "version": "0.2.1" }, { "downloads": [ "https://github.com/LLNL/conduit/releases/download/v0.3.0/conduit-v0.3.0-src-with-blt.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://github.com/LLNL/conduit/releases/download/v0.3.1/conduit-v0.3.1-src-with-blt.tar.gz" ], "version": "0.3.1" }, { "downloads": [ "https://github.com/LLNL/conduit/releases/download/v0.4.0/conduit-v0.4.0-src-with-blt.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://github.com/LLNL/conduit/releases/download/v0.5.0/conduit-v0.5.0-src-with-blt.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://github.com/LLNL/conduit/releases/download/v0.5.1/conduit-v0.5.1-src-with-blt.tar.gz" ], "version": "0.5.1" }, { "downloads": [ 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The original docs are\nhttps://bitbucket.org/gotoh/connect are now 404, so the manpage is\nprovided instead.\n", "version": [ { "downloads": [ "https://bitbucket.org/gotoh/connect/get/1.105.tar.bz2" ], "version": "1.105" } ] }, "conquest": { "alias": [], "categories": [], "dependencies": [ "blas", "fftw-api", "fortran", "gmake", "lapack", "libxc", "mpi", "scalapack" ], "downloads": [ "https://github.com/OrderN/CONQUEST-release/releases/download/vdevelop/CONQUEST-release-develop.tar.gz", "https://github.com/OrderN/CONQUEST-release/releases/download/vmaster/CONQUEST-release-master.tar.gz", "https://github.com/OrderN/CONQUEST-release/releases/download/v1.2/CONQUEST-release-1.2.tar.gz", "https://github.com/OrderN/CONQUEST-release/releases/download/v1.1/CONQUEST-release-1.1.tar.gz", "https://github.com/OrderN/CONQUEST-release/" ], "homepages": [ "http://www.order-n.org/" ], "licenses": [ "MIT" ], "maintainers": [ "davidbowler", "ilectra", "tkoskela" ], "name": "conquest", "patches": [], 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Dakota contains\nalgorithms for: - optimization with gradient and non gradient-based\nmethods; - uncertainty quantification with sampling, reliability,\nstochastic - expansion, and epistemic methods; - parameter estimation\nwith nonlinear least squares methods; - sensitivity/variance analysis\nwith design of experiments and - parameter study methods. These\ncapabilities may be used on their own or as components within advanced\nstrategies such as hybrid optimization, surrogate-based optimization,\nmixed integer nonlinear programming, or optimization under uncertainty.\n", "version": [ { "downloads": [ "https://dakota.sandia.gov/sites/default/files/distributions/public/dakota-6.12-release-public.src.tar.gz" ], "version": "6.12" }, { "repositories": [ { "commit": "f6cb33b517bb304795e1e14d3673fe289df2ec9b", "type": "git", "url": "https://github.com/snl-dakota/dakota.git" } ], "version": "6.18" }, { "repositories": [ { "commit": "603f448b916a8f629d258922e26e7e40dcaaf8ce", "type": "git", "url": "https://github.com/snl-dakota/dakota.git" } ], "version": "6.19.0" }, { "repositories": [ { "commit": "494027b37264ec9268f2de8649d071de0232c534", "type": "git", "url": "https://github.com/snl-dakota/dakota.git" } ], "version": "6.20.0" }, { "downloads": [ "https://dakota.sandia.gov/sites/default/files/distributions/public/dakota-6.3-release-public.src.tar.gz" ], "version": "6.3" }, { "downloads": [ "https://dakota.sandia.gov/sites/default/files/distributions/public/dakota-6.9-release-public.src.tar.gz" ], "version": "6.9" } ] }, "daligner": { "alias": [], "categories": [], "dependencies": [ "c", "gmake" ], "downloads": [ "https://github.com/thegenemyers/DALIGNER/archive/V1.0.tar.gz" ], "homepages": [ "https://github.com/thegenemyers/DALIGNER" ], "licenses": [], "maintainers": [], "name": "daligner", "patches": [], "summary": "Daligner: The Dazzler \"Overlap\" Module.\n", "version": [ { "downloads": [ "https://github.com/thegenemyers/DALIGNER/archive/V1.0.tar.gz" ], "version": "1.0" } ] }, "dalton": { "alias": [], "categories": [], "dependencies": [ "blas", "c", "cmake", "cxx", "fortran", "gmake", "hdf5", "lapack", "mpi", "ninja" ], "downloads": [ "https://gitlab.com/dalton/dalton.git" ], "homepages": [ "https://daltonprogram.org" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [ "foeroyingur" ], "name": "dalton", "patches": [ "pelib-master.patch when @master+mpi+pelib %gcc@10:", "pelib-2020.0.patch when @2020.0+mpi+pelib %gcc@10:", "soppa-2018.2.patch when @2018.2 %intel", "cbiexc-2018.2.patch when @2018.2 %intel" ], "summary": "Molecular electronic-structure program with extensive functionality for\ncalculations of molecular properties at the HF, DFT, MCSCF, MC-srDFT,\nand CC levels of theory.\n", "version": [ { "repositories": [ { "commit": "4aa945ecd235fbf67ed0c1609617c553ef40be89", "type": "git", "url": "https://gitlab.com/dalton/dalton.git" } ], "version": "2018.2" }, { "repositories": [ { "commit": "66052b3af5ea7225e31178bf9a8b031913c72190", "type": "git", "url": "https://gitlab.com/dalton/dalton.git" } ], "version": "2020.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://gitlab.com/dalton/dalton.git" } ], "version": "master" } ] }, "damageproto": { "alias": [], "categories": [], "dependencies": [ "gmake", "gnuconfig", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/proto/damageproto-1.2.1.tar.gz" ], "homepages": [ "https://cgit.freedesktop.org/xorg/proto/damageproto" ], "licenses": [], "maintainers": [], "name": "damageproto", "patches": [], "summary": "X Damage Extension. This package contains header files and documentation\nfor the X Damage extension. 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The solution of\ncontinuum mechanical boundary value problems requires a constitutive\nresponse that connects deformation and stress at each material point.\nThis problem is solved in DAMASK on the basis of crystal plasticity\nusing a variety of constitutive models and homogenization approaches.\nHowever, treating mechanics in isolation is no longer sufficient to\nstudy emergent advanced high-strength materials. In these materials,\ndeformation happens interrelated with displacive phase transformation,\nsignificant heating, and potential damage evolution. Therefore, DAMASK\nis capable of handling multi-physics problems. Following a modular\napproach, additional field equations are solved in a fully coupled way\nusing a staggered approach.\n", "version": [ { "downloads": [ [] ], "version": "3.0.0" }, { "downloads": [ [] ], "version": "3.0.0-alpha4" }, { "downloads": [ [] ], "version": "3.0.0-alpha5" }, { "downloads": [ [] ], "version": "3.0.0-alpha6" }, { "downloads": [ [] ], "version": "3.0.0-alpha7" }, { "downloads": [ [] ], "version": "3.0.0-alpha8" }, { "downloads": [ [] ], "version": "3.0.0-beta" }, { "downloads": [ [] ], "version": "3.0.0-beta2" }, { "downloads": [ [] ], "version": "3.0.1" }, { "downloads": [ [] ], "version": "3.0.2" } ] }, "damask-grid": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "fftw", "fortran", "gmake", "hdf5", "libfyaml", "ninja", "petsc", "pkgconfig" ], "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.2.tar.xz", "https://damask-multiphysics.org/download/damask-3.0.1.tar.xz", "https://damask-multiphysics.org/download/damask-3.0.0.tar.xz", "https://damask-multiphysics.org/download/damask-3.0.0-beta2.tar.xz", "https://damask-multiphysics.org/download/damask-3.0.0-beta.tar.xz", "https://damask-multiphysics.org/download/damask-3.0.0-alpha8.tar.xz", "https://damask-multiphysics.org/download/damask-3.0.0-alpha7.tar.xz", "https://damask-multiphysics.org/download/damask-3.0.0-alpha6.tar.xz", "https://damask-multiphysics.org/download/damask-3.0.0-alpha5.tar.xz", "https://damask-multiphysics.org/download/damask-3.0.0-alpha4.tar.xz" ], "homepages": [ "https://damask-multiphysics.org" ], "licenses": [ "AGPL-3.0-or-later" ], "maintainers": [ "MarDiehl" ], "name": "damask-grid", "patches": [ "T-init.patch when @3.0.0-alpha7", "long-lines.patch when @3.0.0-alpha7", "CMakeDebugRelease.patch when @3.0.0-alpha4" ], "summary": "Grid solver for DAMASK\n", "version": [ { "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.0.tar.xz" ], "version": "3.0.0" }, { "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.0-alpha4.tar.xz" ], "version": "3.0.0-alpha4" }, { "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.0-alpha5.tar.xz" ], "version": "3.0.0-alpha5" }, { "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.0-alpha6.tar.xz" ], "version": "3.0.0-alpha6" }, { "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.0-alpha7.tar.xz" ], "version": "3.0.0-alpha7" }, { "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.0-alpha8.tar.xz" ], "version": "3.0.0-alpha8" }, { "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.0-beta.tar.xz" ], "version": "3.0.0-beta" }, { "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.0-beta2.tar.xz" ], "version": "3.0.0-beta2" }, { "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.1.tar.xz" ], "version": "3.0.1" }, { "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.2.tar.xz" ], "version": "3.0.2" } ] }, "damask-mesh": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "fortran", "gmake", "hdf5", "libfyaml", "ninja", "petsc", "pkgconfig" ], "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.2.tar.xz", "https://damask-multiphysics.org/download/damask-3.0.1.tar.xz", "https://damask-multiphysics.org/download/damask-3.0.0.tar.xz", "https://damask-multiphysics.org/download/damask-3.0.0-beta2.tar.xz", "https://damask-multiphysics.org/download/damask-3.0.0-beta.tar.xz", "https://damask-multiphysics.org/download/damask-3.0.0-alpha8.tar.xz", "https://damask-multiphysics.org/download/damask-3.0.0-alpha7.tar.xz", "https://damask-multiphysics.org/download/damask-3.0.0-alpha6.tar.xz", "https://damask-multiphysics.org/download/damask-3.0.0-alpha5.tar.xz", "https://damask-multiphysics.org/download/damask-3.0.0-alpha4.tar.xz" ], "homepages": [ "https://damask-multiphysics.org" ], "licenses": [ "AGPL-3.0-or-later" ], "maintainers": [ "MarDiehl" ], "name": "damask-mesh", "patches": [ "long-lines.patch when @3.0.0-alpha7", "CMakeDebugRelease.patch when @3.0.0-alpha4" ], "summary": "Mesh solver for DAMASK\n", "version": [ { "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.0.tar.xz" ], "version": "3.0.0" }, { "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.0-alpha4.tar.xz" ], "version": "3.0.0-alpha4" }, { "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.0-alpha5.tar.xz" ], "version": "3.0.0-alpha5" }, { "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.0-alpha6.tar.xz" ], "version": "3.0.0-alpha6" }, { "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.0-alpha7.tar.xz" ], "version": "3.0.0-alpha7" }, { "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.0-alpha8.tar.xz" ], "version": "3.0.0-alpha8" }, { "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.0-beta.tar.xz" ], "version": "3.0.0-beta" }, { "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.0-beta2.tar.xz" ], "version": "3.0.0-beta2" }, { "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.1.tar.xz" ], "version": "3.0.1" }, { "downloads": [ "https://damask-multiphysics.org/download/damask-3.0.2.tar.xz" ], "version": "3.0.2" } ] }, "damselfly": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "mpi", "ninja" ], "downloads": [ "https://github.com/LLNL/damselfly/archive/v1.0.tar.gz" ], "homepages": [ "https://github.com/llnl/damselfly" ], "licenses": [], "maintainers": [], "name": "damselfly", "patches": [], "summary": "Damselfly is a model-based parallel network simulator.\n", "version": [ { "downloads": [ "https://github.com/LLNL/damselfly/archive/v1.0.tar.gz" ], "version": "1.0" } ] }, "daos": { "alias": [], "categories": [], "dependencies": [ "argobots", "boost", "c", "cmocka", "cxx", "go", "hwloc", "isa-l", "isa-l-crypto", "libfabric", "libfuse", "libunwind", "libyaml", "mercury", "openssl", "pkgconfig", "pmdk", "protobuf-c", "py-distro", "readline", "scons", "spdk", "ucx", "uuid" ], "downloads": [ "https://github.com/daos-stack/daos.git" ], "homepages": [ "https://github.com/daos-stack/daos" ], "licenses": [ "BSD-2-Clause-Patent" ], "maintainers": [ "hyoklee" ], "name": "daos", "patches": [ "0001-LIBPATH-fix-for-ALT_PREFIX.2.patch when @2.2.0:" ], "summary": "The Distributed Asynchronous Object Storage (DAOS) is an open-source\nsoftware-defined object store designed from the ground up for massively\ndistributed Non Volatile Memory (NVM).\n", "version": [ { "repositories": [ { "commit": "d2a1f2790c946659c9398926254e6203fd957b7c", "type": "git", "url": "https://github.com/daos-stack/daos.git" } ], "version": "2.2.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": 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"https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.0-pre1.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.0.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.3.1.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.3.0-pre2.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.3.0-pre1.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.3.0.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.2.1.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.2.0.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.1.8.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.1.7.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.1.6.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.1.0.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.0.0.tar.gz", 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DarshanRuntime package should be installed on systems where\nyou intend to instrument MPI applications.\n", "version": [ { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.0.0.tar.gz" ], "version": "3.0.0" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.1.0.tar.gz" ], "version": "3.1.0" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.1.6.tar.gz" ], "version": "3.1.6" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.1.7.tar.gz" ], "version": "3.1.7" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.1.8.tar.gz" ], "version": "3.1.8" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.2.0.tar.gz" ], "version": "3.2.0" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.2.1.tar.gz" ], "version": "3.2.1" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.3.0.tar.gz" ], "version": "3.3.0" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.3.0-pre1.tar.gz" ], "version": "3.3.0-pre1" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.3.0-pre2.tar.gz" ], "version": "3.3.0-pre2" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.3.1.tar.gz" ], "version": "3.3.1" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.0.tar.gz" ], "version": "3.4.0" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.0-pre1.tar.gz" ], "version": "3.4.0-pre1" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.1.tar.gz" ], "version": "3.4.1" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.2.tar.gz" ], "version": "3.4.2" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.3.tar.gz" ], "version": "3.4.3" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.4.tar.gz" ], "version": "3.4.4" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.5.tar.gz" ], "version": "3.4.5" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.6.tar.gz" ], "version": "3.4.6" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.7.tar.gz" ], "version": "3.4.7" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/darshan-hpc/darshan.git" } ], "version": "main" } ] }, "darshan-util": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "autoconf", "automake", "bzip2", "c", "cxx", "fortran", "gmake", "gnuconfig", "libtool", "m4", "zlib-api" ], "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-main.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.7.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.6.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.5.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.4.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.3.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.2.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.1.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.0-pre1.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.0.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.3.1.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.3.0-pre2.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.3.0-pre1.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.3.0.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.2.1.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.2.0.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.1.8.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.1.7.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.1.6.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.1.0.tar.gz", "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.0.0.tar.gz", "https://github.com/darshan-hpc/darshan.git" ], "homepages": [ "https://www.mcs.anl.gov/research/projects/darshan/" ], "licenses": [], "maintainers": [ "carns", "wkliao" ], "name": "darshan-util", "patches": [ "retvoid.patch when @3.2.0:3.2.1" ], "summary": "Darshan (util) is collection of tools for parsing and summarizing log\nfiles produced by Darshan (runtime) instrumentation. This package is\ntypically installed on systems (front-end) where you intend to analyze\nlog files produced by Darshan (runtime).\n", "version": [ { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.0.0.tar.gz" ], "version": "3.0.0" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.1.0.tar.gz" ], "version": "3.1.0" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.1.6.tar.gz" ], "version": "3.1.6" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.1.7.tar.gz" ], "version": "3.1.7" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.1.8.tar.gz" ], "version": "3.1.8" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.2.0.tar.gz" ], "version": "3.2.0" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.2.1.tar.gz" ], "version": "3.2.1" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.3.0.tar.gz" ], "version": "3.3.0" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.3.0-pre1.tar.gz" ], "version": "3.3.0-pre1" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.3.0-pre2.tar.gz" ], "version": "3.3.0-pre2" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.3.1.tar.gz" ], "version": "3.3.1" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.0.tar.gz" ], "version": "3.4.0" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.0-pre1.tar.gz" ], "version": "3.4.0-pre1" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.1.tar.gz" ], "version": "3.4.1" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.2.tar.gz" ], "version": "3.4.2" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.3.tar.gz" ], "version": "3.4.3" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.4.tar.gz" ], "version": "3.4.4" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.5.tar.gz" ], "version": "3.4.5" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.6.tar.gz" ], "version": "3.4.6" }, { "downloads": [ "https://web.cels.anl.gov/projects/darshan/releases/darshan-3.4.7.tar.gz" ], "version": "3.4.7" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/darshan-hpc/darshan.git" } ], "version": "main" } ] }, "dash": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libedit", "libtool", "m4" ], "downloads": [ "https://git.kernel.org/pub/scm/utils/dash/dash.git/snapshot/dash-0.5.12.tar.gz", 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EcoSLIM integrates seamlessly\nwith ParFlow-CLM.\n", "version": [ { "downloads": [ "https://github.com/reedmaxwell/EcoSLIM/archive/refs/tags/v1.3.tar.gz" ], "version": "1.3" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/reedmaxwell/EcoSLIM.git" } ], "version": "master" } ] }, "ecp-data-vis-sdk": { "alias": [], "categories": [ "ecp" ], "dependencies": [ "adios2", "ascent", "conduit", "cuda", "darshan-runtime", "darshan-util", "faodel", "hdf5", "hdf5-vfd-gds", "hdf5-vol-async", "hdf5-vol-cache", "hdf5-vol-log", "hip", "hsa-rocr-dev", "libcatalyst", "llvm-amdgpu", "parallel-netcdf", "paraview", "py-cinemasci", "sensei", "sz", "unifyfs", "veloc", "visit", "vtk-m", "zfp" ], "downloads": [], "homepages": [ "https://ecp-data-vis-sdk.github.io/" ], "licenses": [], "maintainers": [ "kwryankrattiger", "svenevs" ], "name": "ecp-data-vis-sdk", "patches": [], "summary": "ECP Data & Vis SDK\n", "version": [ { "downloads": [ [] ], "version": "1.0" } ] }, "ecp-proxy-apps": { "alias": [], "categories": [ "proxy-app", "ecp-proxy-app" ], "dependencies": [ "amg2013", "comd", "cosmoflow-benchmark", "cradl", "ember", "laghos", "macsio", "miniamr", "minife", "minigan", "miniqmc", "minitri", "minivite", "mlperf-deepcam", "nekbone", "picsarlite", "sw4lite", "swfft", "thornado-mini", "xsbench" ], "downloads": [], "homepages": [ "https://proxyapps.exascaleproject.org" ], "licenses": [], "maintainers": [ "rspavel" ], "name": "ecp-proxy-apps", "patches": [], "summary": "This is a collection of packages that represents the official suite of\nDOE/ECP proxy applications. This is a Spack bundle package that installs\nthe ECP proxy application suite.\n", "version": [ { "downloads": [ [] ], "version": "1.0" }, { "downloads": [ [] ], "version": "1.1" }, { "downloads": [ [] ], "version": "2.0" }, { "downloads": [ [] ], "version": "2.1" }, { "downloads": [ [] ], "version": "3.0" }, { "downloads": [ [] ], "version": "4.0" } ] }, "ectrans": { "alias": [], "categories": [], "dependencies": [ "blas", "c", "cmake", "cxx", "ecbuild", "fftw-api", "fiat", "fortran", "gmake", "lapack", "mkl", "mpi", "ninja" ], "downloads": [ "https://github.com/ecmwf-ifs/ectrans/archive/develop.tar.gz", "https://github.com/ecmwf-ifs/ectrans/archive/main.tar.gz", "https://github.com/ecmwf-ifs/ectrans/archive/1.7.0.tar.gz", "https://github.com/ecmwf-ifs/ectrans/archive/1.6.2.tar.gz", "https://github.com/ecmwf-ifs/ectrans/archive/1.5.0.tar.gz", "https://github.com/ecmwf-ifs/ectrans/archive/1.4.0.tar.gz", "https://github.com/ecmwf-ifs/ectrans/archive/1.2.0.tar.gz", "https://github.com/ecmwf-ifs/ectrans/archive/1.1.0.tar.gz", "https://github.com/ecmwf-ifs/ectrans.git" ], "homepages": [ "https://github.com/ecmwf-ifs/ectrans" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "climbfuji" ], "name": "ectrans", "patches": [ "https://github.com/ecmwf-ifs/ectrans/commit/98f0d505d5b0866cab68a15e86e1a495bafd93d2.patch?full_index=1 when @1.3.1:1.5.1", "find_lapack.patch when @1.5:" ], "summary": "Ectrans is the global spherical Harmonics transforms library, extracted\nfrom the IFS. It is using a hybrid of MPI and OpenMP parallelisation\nstrategies. The package contains both single- and double precision\nFortran libraries (trans_sp, trans_dp), as well as a C interface to the\ndouble-precision version (transi_dp).\n", "version": [ { "downloads": [ "https://github.com/ecmwf-ifs/ectrans/archive/1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://github.com/ecmwf-ifs/ectrans/archive/1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://github.com/ecmwf-ifs/ectrans/archive/1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://github.com/ecmwf-ifs/ectrans/archive/1.5.0.tar.gz" ], "version": "1.5.0" }, { "downloads": [ "https://github.com/ecmwf-ifs/ectrans/archive/1.6.2.tar.gz" ], "version": "1.6.2" }, { "downloads": [ "https://github.com/ecmwf-ifs/ectrans/archive/1.7.0.tar.gz" ], "version": "1.7.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/ecmwf-ifs/ectrans.git" } ], "version": "develop" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/ecmwf-ifs/ectrans.git" } ], "version": "main" } ] }, "ed": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gnuconfig" ], "downloads": [ "https://ftpmirror.gnu.org/ed/ed-1.4.tar.gz" ], "homepages": [ "https://www.gnu.org/software/ed" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "ed", "patches": [], "summary": "GNU ed is a line-oriented text editor. 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"maintainers": [], "name": "editres", "patches": [], "summary": "Dynamic resource editor for X Toolkit applications.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/editres-1.0.6.tar.gz" ], "version": "1.0.6" }, { "downloads": [ "https://www.x.org/archive/individual/app/editres-1.0.8.tar.gz" ], "version": "1.0.8" } ] }, "edm4hep": { "alias": [], "categories": [ "hep", "key4hep" ], "dependencies": [ "catch2", "cmake", "cxx", "gmake", "hepmc3", "heppdt", "ninja", "nlohmann-json", "podio", "py-jinja2", "py-pyyaml", "python", "python-venv", "root" ], "downloads": [ "https://github.com/key4hep/EDM4hep/archive/v00-01.tar.gz", "https://github.com/key4hep/EDM4hep.git" ], "homepages": [ "https://github.com/key4hep/EDM4hep" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "jmcarcell", "tmadlener", "vvolkl" ], "name": "edm4hep", "patches": [ "https://github.com/key4hep/EDM4hep/commit/18799dacfdaf5d746134c957de48607aa2665d75.patch?full_index=1 when @0.99.1" ], 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"https://elpa.mpcdf.mpg.de/software/tarball-archive/Releases/2025.06.001/elpa-2025.06.001.tar.gz", "https://elpa.mpcdf.mpg.de/software/tarball-archive/Releases/2025.01.002/elpa-2025.01.002.tar.gz", "https://elpa.mpcdf.mpg.de/software/tarball-archive/Releases/2025.01.001/elpa-2025.01.001.tar.gz", "https://elpa.mpcdf.mpg.de/software/tarball-archive/Releases/2024.05.001/elpa-2024.05.001.tar.gz", "https://elpa.mpcdf.mpg.de/software/tarball-archive/Releases/2024.03.001/elpa-2024.03.001.tar.gz", "https://elpa.mpcdf.mpg.de/software/tarball-archive/Releases/2023.11.001-patched/elpa-2023.11.001-patched.tar.gz", "https://elpa.mpcdf.mpg.de/software/tarball-archive/Releases/2023.05.001/elpa-2023.05.001.tar.gz", "https://elpa.mpcdf.mpg.de/software/tarball-archive/Releases/2022.11.001/elpa-2022.11.001.tar.gz", "https://elpa.mpcdf.mpg.de/software/tarball-archive/Releases/2021.11.001/elpa-2021.11.001.tar.gz", "https://elpa.mpcdf.mpg.de/software/tarball-archive/Releases/2021.05.002_bugfix/elpa-2021.05.002_bugfix.tar.gz", "https://elpa.mpcdf.mpg.de/software/tarball-archive/Releases/2021.05.001/elpa-2021.05.001.tar.gz", "https://gitlab.mpcdf.mpg.de/elpa/elpa.git" ], "homepages": [ "https://elpa.mpcdf.mpg.de/" ], "licenses": [ "LGPL-3.0-only" ], "maintainers": [], "name": "elpa", "patches": [ "fujitsu.patch when %fj", "https://gitlab.mpcdf.mpg.de/elpa/elpa/-/commit/5a821b79dd2905c691fc0973c9f3044904ac2653.diff when @:2025.1.1", "hipcc.patch when @2025.01.001:2025.6.1+rocm" ], "summary": "Eigenvalue solvers for Petaflop-Applications (ELPA)\n", "version": [ { "downloads": [ "https://elpa.mpcdf.mpg.de/software/tarball-archive/Releases/2021.05.001/elpa-2021.05.001.tar.gz" ], "version": "2021.05.001" }, { "downloads": [ "https://elpa.mpcdf.mpg.de/software/tarball-archive/Releases/2021.05.002_bugfix/elpa-2021.05.002_bugfix.tar.gz" ], "version": "2021.05.002_bugfix" }, { "downloads": [ 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"version": "2025.01.001" }, { "downloads": [ "https://elpa.mpcdf.mpg.de/software/tarball-archive/Releases/2025.01.002/elpa-2025.01.002.tar.gz" ], "version": "2025.01.002" }, { "downloads": [ "https://elpa.mpcdf.mpg.de/software/tarball-archive/Releases/2025.06.001/elpa-2025.06.001.tar.gz" ], "version": "2025.06.001" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://gitlab.mpcdf.mpg.de/elpa/elpa.git" } ], "version": "master" } ] }, "elsd": { "alias": [], "categories": [], "dependencies": [ "blas", "c", "gmake", "lapack" ], "downloads": [ "https://github.com/viorik/ELSD.git" ], "homepages": [ "http://ubee.enseeiht.fr/vision/ELSD/" ], "licenses": [ "AGPL-3.0-only" ], "maintainers": [], "name": "elsd", "patches": [], "summary": "ELSD: Ellipse and Line Segment Detector\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/viorik/ELSD.git" } ], "version": "master" } ] }, "elsdc": { 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The\nprogram allows users to calculate the solvation free energy to arbitrary\nsolvents, including inhomogeneous systems, and can run in cooperation\nwith state-of-art molecular simulation softwares, such as NAMD, GROMACS\nand/or AMBER.\n", "version": [ { "downloads": [ "https://sourceforge.net/projects/ermod/files/ermod-0.3%20%28stable%29/ermod-0.3.5.tar.gz" ], "version": "0.3.5" }, { "downloads": [ "https://sourceforge.net/projects/ermod/files/ermod-0.3%20%28stable%29/ermod-0.3.6.tar.gz" ], "version": "0.3.6" } ] }, "erne": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "cxx", "gmake", "gnuconfig", "openmpi" ], "downloads": [ "https://downloads.sourceforge.net/project/erne/2.1.1/erne-2.1.1-source.tar.gz" ], "homepages": [ "https://erne.sourceforge.net/" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "erne", "patches": [], "summary": "The Extended Randomized Numerical alignEr using BWT\n", "version": [ { "downloads": [ "https://downloads.sourceforge.net/project/erne/2.1.1/erne-2.1.1-source.tar.gz" ], "version": "2.1.1" } ] }, "es-shell": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "readline", "yacc" ], "downloads": [ "https://github.com/wryun/es-shell/releases/download/v0.9.1/es-0.9.1.tar.gz" ], "homepages": [ "https://wryun.github.io/es-shell/" ], "licenses": [ "Public-Domain" ], "maintainers": [], "name": "es-shell", "patches": [], "summary": "Es is an extensible shell. The language was derived from the Plan 9\nshell, rc, and was influenced by functional programming languages, such\nas Scheme, and the Tcl embeddable programming language. This\nimplementation is derived from Byron Rakitzis's public domain\nimplementation of rc.\n", "version": [ { "downloads": [ "https://github.com/wryun/es-shell/releases/download/v0.9.1/es-0.9.1.tar.gz" ], "version": "0.9.1" } ] }, "esmf": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "lapack", "mpi", "netcdf-c", "netcdf-fortran", "parallel-netcdf", "parallelio", "perl", "py-mpi4py", "py-numpy", "py-pip", "py-pyyaml", "py-setuptools", "py-wheel", "python", "python-venv", "xerces-c" ], "downloads": [ "https://github.com/esmf-org/esmf/archive/vdevelop.tar.gz", "https://github.com/esmf-org/esmf/archive/v8.9.0.tar.gz", "https://github.com/esmf-org/esmf/archive/v8.8.1.tar.gz", "https://github.com/esmf-org/esmf/archive/v8.8.0.tar.gz", "https://github.com/esmf-org/esmf/archive/v8.7.0.tar.gz", "https://github.com/esmf-org/esmf/archive/v8.6.1.tar.gz", "https://github.com/esmf-org/esmf/archive/v8.6.0.tar.gz", "https://github.com/esmf-org/esmf/archive/v8.5.0.tar.gz", "https://github.com/esmf-org/esmf/archive/v8.4.2.tar.gz", "https://github.com/esmf-org/esmf/archive/v8.4.1.tar.gz", "https://github.com/esmf-org/esmf/archive/v8.3.1.tar.gz", "https://github.com/esmf-org/esmf/archive/v8.2.0.tar.gz", "https://github.com/esmf-org/esmf/archive/v8.1.1.tar.gz", "https://github.com/esmf-org/esmf/archive/v8.0.1.tar.gz", "https://github.com/esmf-org/esmf.git" ], "homepages": [ "https://earthsystemmodeling.org/" ], "licenses": [], "maintainers": [ "AlexanderRichert-NOAA", "climbfuji", "jedwards4b", "theurich", "uturuncoglu" ], "name": "esmf", "patches": [ "longtoint.patch when @:8.3.2 %cce@14:", "longtoint.patch when @:8.3.2 %oneapi@2022:", "esmf_cpp_info.patch", "yaml_cpp.patch when @8.5:8.8 %gcc@15:" ], "summary": "The Earth System Modeling Framework (ESMF) is high-performance, flexible\nsoftware infrastructure for building and coupling weather, climate, and\nrelated Earth science applications. The ESMF defines an architecture for\ncomposing complex, coupled modeling systems and includes data structures\nand utilities for developing individual models. The National Unified\nOperational Prediction Capability (NUOPC) Layer defines a common model\narchitecture to support interoperable ESMF components. The NUOPC Layer\nis included with the ESMF package.\n", "version": [ { "downloads": [ "https://github.com/esmf-org/esmf/archive/v8.0.1.tar.gz" ], "version": "8.0.1" }, { "downloads": [ "https://github.com/esmf-org/esmf/archive/v8.1.1.tar.gz" ], "version": "8.1.1" }, { "downloads": [ "https://github.com/esmf-org/esmf/archive/v8.2.0.tar.gz" ], "version": "8.2.0" }, { "downloads": [ "https://github.com/esmf-org/esmf/archive/v8.3.1.tar.gz" ], "version": "8.3.1" }, { "downloads": [ "https://github.com/esmf-org/esmf/archive/v8.4.1.tar.gz" ], "version": "8.4.1" }, { "downloads": [ "https://github.com/esmf-org/esmf/archive/v8.4.2.tar.gz" ], "version": "8.4.2" }, { "downloads": [ "https://github.com/esmf-org/esmf/archive/v8.5.0.tar.gz" ], "version": "8.5.0" }, { "downloads": [ "https://github.com/esmf-org/esmf/archive/v8.6.0.tar.gz" ], "version": "8.6.0" }, { "downloads": [ "https://github.com/esmf-org/esmf/archive/v8.6.1.tar.gz" ], "version": "8.6.1" }, { "downloads": [ 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"https://github.com/federico-terzi/espanso/releases/download/v0.5.5/espanso-linux.tar.gz", "https://github.com/federico-terzi/espanso/releases/download/v0.5.4/espanso-linux.tar.gz", "https://github.com/federico-terzi/espanso/releases/download/v0.5.3/espanso-linux.tar.gz", "https://github.com/federico-terzi/espanso/releases/download/v0.5.2/espanso-linux.tar.gz", "https://github.com/federico-terzi/espanso/releases/download/v0.5.1/espanso-linux.tar.gz", "https://github.com/federico-terzi/espanso/releases/download/v0.5.0/espanso-linux.tar.gz" ], "homepages": [ "https://github.com/federico-terzi/espanso" ], "licenses": [], "maintainers": [ "zicklag" ], "name": "espanso", "patches": [], "summary": "Cross-platform Text Expander written in Rust\n", "version": [ { "downloads": [ "https://github.com/federico-terzi/espanso/releases/download/v0.5.0/espanso-linux.tar.gz" ], "version": "0.5.0" }, { "downloads": [ 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"https://github.com/federico-terzi/espanso/releases/download/v0.6.2/espanso-linux.tar.gz" ], "version": "0.6.2" }, { "downloads": [ "https://github.com/federico-terzi/espanso/releases/download/v0.6.3/espanso-linux.tar.gz" ], "version": "0.6.3" } ] }, "essl": { "alias": [ { "alias_for": "essl+lapackforessl", "name": "lapack" }, { "alias_for": "essl", "name": "blas" } ], "categories": [], "dependencies": [], "downloads": [], "homepages": [ "https://www.ibm.com/systems/power/software/essl/" ], "licenses": [], "maintainers": [], "name": "essl", "patches": [], "summary": "IBM's Engineering and Scientific Subroutine Library (ESSL).\n", "version": [ { "downloads": [ [] ], "version": "6.2.1.1" } ] }, "estarlight": { "alias": [], "categories": [], "dependencies": [ "cmake", "dpmjet", "gmake", "hepmc3", "ninja", "pythia6", "pythia8" ], "downloads": [ "https://github.com/eic/estarlight/archive/refs/tags/vmaster.zip", "https://github.com/eic/estarlight/archive/refs/tags/v1.2.0.zip", "https://github.com/eic/estarlight/archive/refs/tags/v1.1.0.zip", "https://github.com/eic/estarlight/archive/refs/tags/v1.0.3.zip", "https://github.com/eic/estarlight/archive/refs/tags/v1.0.2.zip", "https://github.com/eic/estarlight/archive/refs/tags/v1.0.1.zip", "https://github.com/eic/estarlight.git" ], "homepages": [ "https://github.com/eic/estarlight" ], "licenses": [], "maintainers": [ "wdconinc" ], "name": "estarlight", "patches": [], "summary": "Monte Carlo event generator for coherent vector meson photo- and\nelectro- production in electron-ion collisions.\n", "version": [ { "downloads": [ "https://github.com/eic/estarlight/archive/refs/tags/v1.0.1.zip" ], "version": "1.0.1" }, { "downloads": [ "https://github.com/eic/estarlight/archive/refs/tags/v1.0.2.zip" ], "version": "1.0.2" }, { "downloads": [ "https://github.com/eic/estarlight/archive/refs/tags/v1.0.3.zip" ], "version": "1.0.3" }, { "downloads": [ "https://github.com/eic/estarlight/archive/refs/tags/v1.1.0.zip" ], "version": "1.1.0" }, { "downloads": [ "https://github.com/eic/estarlight/archive/refs/tags/v1.2.0.zip" ], "version": "1.2.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/eic/estarlight.git" } ], "version": "master" } ] }, "esys-particle": { "alias": [], "categories": [], "dependencies": [ "boost", "cmake", "cxx", "gmake", "mpi", "ninja", "py-setuptools", "python" ], "downloads": [ "https://launchpadlibrarian.net/539636757/esys-particle-3.0-alpha.tar.gz" ], "homepages": [ "https://launchpad.net/esys-particle" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "snehring" ], "name": "esys-particle", "patches": [], "summary": "ESyS-Particle is Open Source software for particle-based numerical\nmodelling. The software implements the Discrete Element Method (DEM), a\nwidely used technique for modelling processes involving large\ndeformations, granular flow and/or fragmentation.\n", "version": [ { "downloads": [ "https://launchpadlibrarian.net/539636757/esys-particle-3.0-alpha.tar.gz" ], "version": "3.0-alpha" } ] }, "etcd": { "alias": [], "categories": [], "dependencies": [ "gmake", "go" ], "downloads": [ "https://github.com/etcd-io/etcd/archive/v3.6.5.tar.gz", "https://github.com/etcd-io/etcd/archive/v3.5.9.tar.gz", "https://github.com/etcd-io/etcd/archive/v3.4.23.tar.gz" ], "homepages": [ "https://etcd.io/" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "alecbcs" ], "name": "etcd", "patches": [], "summary": "etcd is a distributed reliable key-value store for the most critical\ndata of a distributed system\n", "version": [ { "downloads": [ "https://github.com/etcd-io/etcd/archive/v3.4.23.tar.gz" ], "version": "3.4.23" }, { "downloads": [ "https://github.com/etcd-io/etcd/archive/v3.5.9.tar.gz" ], "version": "3.5.9" }, { "downloads": [ "https://github.com/etcd-io/etcd/archive/v3.6.5.tar.gz" ], "version": "3.6.5" } ] }, "ethminer": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "cmake", "cuda", "curl", "cxx", "gmake", "json-c", "mesa", "ninja", "python", "zlib-api" ], "downloads": [ "https://github.com/ethereum-mining/ethminer/archive/v0.12.0.tar.gz" ], "homepages": [ "https://github.com/ethereum-mining/ethminer" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "ethminer", "patches": [], "summary": "The ethminer is an Ethereum GPU mining worker.\n", "version": [ { "downloads": [ "https://github.com/ethereum-mining/ethminer/archive/v0.12.0.tar.gz" ], "version": "0.12.0" } ] }, "ethtool": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://github.com/Distrotech/ethtool/archive/v4.8.tar.gz" ], "homepages": [ "https://github.com/Distrotech/ethtool" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "ethtool", "patches": [], "summary": "Ethtool is a small utility for examining and tuning your ethernet-based\nnetwork interface.\n", "version": [ { "downloads": [ "https://github.com/Distrotech/ethtool/archive/v4.8.tar.gz" ], "version": "4.8" } ] }, "etsf-io": { "alias": [], "categories": [], "dependencies": [ "fortran", "gmake", "hdf5", "netcdf-fortran" ], "downloads": [ "https://launchpad.net/etsf-io/1.0/1.0.4/+download/etsf_io-1.0.4.tar.gz" ], "homepages": [ "https://github.com/ElectronicStructureLibrary/libetsf_io" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "etsf-io", "patches": [ "tests_module.patch", "tests_init.patch" ], "summary": "ETSF_IO is a library implementing the Nanoquanta/ETSF file format\nspecifications. ETSF_IO enables an architecture-independent exchange of\ncrystallographic data, electronic wavefunctions, densities and\npotentials, as well as spectroscopic data. It is meant to be used by\nquantum-physical and quantum-chemical applications relying upon Density\nFunctional Theory (DFT).\n", "version": [ { "downloads": [ "https://launchpad.net/etsf-io/1.0/1.0.4/+download/etsf_io-1.0.4.tar.gz" ], "version": "1.0.4" } ] }, "eve": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/jfalcou/eve/archive/refs/tags/vmain.tar.gz", "https://github.com/jfalcou/eve/archive/refs/tags/v2023.02.15.tar.gz", "https://github.com/jfalcou/eve/archive/refs/tags/v2022.09.1.tar.gz", "https://github.com/jfalcou/eve/archive/refs/tags/v2022.09.0.tar.gz", "https://github.com/jfalcou/eve/archive/refs/tags/v2022.03.0.tar.gz", "https://github.com/jfalcou/eve/archive/refs/tags/v2021.10.0.tar.gz", "https://github.com/jfalcou/eve.git" ], "homepages": [ "https://jfalcou.github.io/eve/" ], "licenses": [ "BSL-1.0" ], "maintainers": [ "jfalcou" ], "name": "eve", "patches": [], "summary": "Expressive Velocity Engine - 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This extension defines a\nprotocol for a client to determine information about core X visuals\nbeyond what the core protocol provides.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/proto/evieext-1.1.1.tar.gz" ], "version": "1.1.1" } ] }, "evtgen": { "alias": [], "categories": [ "hep" ], "dependencies": [ "c", "cmake", "cxx", "gmake", "hepmc", "hepmc3", "ninja", "photos", "pythia8", "sherpa", "tauola" ], "downloads": [ "https://evtgen.hepforge.org/downloads?f=EvtGen-02.02.03.tar.gz", "https://evtgen.hepforge.org/downloads?f=EvtGen-02.02.02.tar.gz", "https://evtgen.hepforge.org/downloads?f=EvtGen-02.02.01.tar.gz", "https://evtgen.hepforge.org/downloads?f=EvtGen-02.02.00.tar.gz", "https://evtgen.hepforge.org/downloads?f=EvtGen-02.00.00.tar.gz" ], "homepages": [ "https://evtgen.hepforge.org/" ], "licenses": [], "maintainers": [ "vvolkl" ], "name": "evtgen", "patches": [ "evtgen-2.0.0.patch when @02.00.00 ^pythia8@8.304:" ], "summary": "EvtGen is a Monte Carlo event generator that simulates the decays of\nheavy flavour particles, primarily B and D mesons.\n", "version": [ { "downloads": [ "https://evtgen.hepforge.org/downloads?f=EvtGen-02.00.00.tar.gz" ], "version": "02.00.00" }, { "downloads": [ "https://evtgen.hepforge.org/downloads?f=EvtGen-02.02.00.tar.gz" ], "version": "02.02.00" }, { "downloads": [ "https://evtgen.hepforge.org/downloads?f=EvtGen-02.02.01.tar.gz" ], "version": "02.02.01" }, { "downloads": [ "https://evtgen.hepforge.org/downloads?f=EvtGen-02.02.02.tar.gz" ], "version": "02.02.02" }, { "downloads": [ "https://evtgen.hepforge.org/downloads?f=EvtGen-02.02.03.tar.gz" ], "version": "02.02.03" } ] }, "exabayes": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gnuconfig", "mpi" ], "downloads": [ "https://sco.h-its.org/exelixis/resource/download/software/exabayes-1.5.1.tar.gz", "https://sco.h-its.org/exelixis/resource/download/software/exabayes-1.5.tar.gz" ], "homepages": [ "https://sco.h-its.org/exelixis/web/software/exabayes/" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "exabayes", "patches": [], "summary": "ExaBayes is a software package for Bayesian tree inference. It is\nparticularly suitable for large-scale analyses on computer clusters.\n", "version": [ { "downloads": [ "https://sco.h-its.org/exelixis/resource/download/software/exabayes-1.5.tar.gz" ], "version": "1.5" }, { "downloads": [ "https://sco.h-its.org/exelixis/resource/download/software/exabayes-1.5.1.tar.gz" ], "version": "1.5.1" } ] }, "exaca": { "alias": [], "categories": [ "ecp" ], "dependencies": [ "cmake", "cuda", "cxx", "finch", "gmake", "googletest", "hip", "hsa-rocr-dev", "kokkos", "llvm-amdgpu", "mpi", "ninja", "nlohmann-json" ], "downloads": [ "https://github.com/LLNL/ExaCA/archive/master.tar.gz", "https://github.com/LLNL/ExaCA/archive/2.0.1.tar.gz", "https://github.com/LLNL/ExaCA/archive/2.0.0.tar.gz", "https://github.com/LLNL/ExaCA/archive/1.3.0.tar.gz", "https://github.com/LLNL/ExaCA/archive/1.2.0.tar.gz", "https://github.com/LLNL/ExaCA/archive/1.1.0.tar.gz", "https://github.com/LLNL/ExaCA/archive/1.0.0.tar.gz", "https://github.com/LLNL/ExaCA.git" ], "homepages": [ 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"https://github.com/stamatak/ExaML/archive/v3.0.17.tar.gz", "https://github.com/stamatak/ExaML/archive/v3.0.16.tar.gz", "https://github.com/stamatak/ExaML/archive/v3.0.15.tar.gz", "https://github.com/stamatak/ExaML/archive/v3.0.14.tar.gz", "https://github.com/stamatak/ExaML/archive/v3.0.13.tar.gz" ], "homepages": [ "https://github.com/stamatak/ExaML" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [ "robqiao" ], "name": "examl", "patches": [], "summary": " Exascale Maximum Likelihood (ExaML) code for phylogenetic inference\nusing MPI. This code implements the popular RAxML search algorithm for\nmaximum likelihood based inference of phylogenetic trees.\n", "version": [ { "downloads": [ "https://github.com/stamatak/ExaML/archive/v3.0.13.tar.gz" ], "version": "3.0.13" }, { "downloads": [ "https://github.com/stamatak/ExaML/archive/v3.0.14.tar.gz" ], "version": "3.0.14" }, { "downloads": [ "https://github.com/stamatak/ExaML/archive/v3.0.15.tar.gz" ], "version": "3.0.15" }, { "downloads": [ "https://github.com/stamatak/ExaML/archive/v3.0.16.tar.gz" ], "version": "3.0.16" }, { "downloads": [ "https://github.com/stamatak/ExaML/archive/v3.0.17.tar.gz" ], "version": "3.0.17" }, { "downloads": [ "https://github.com/stamatak/ExaML/archive/v3.0.18.tar.gz" ], "version": "3.0.18" }, { "downloads": [ "https://github.com/stamatak/ExaML/archive/v3.0.19.tar.gz" ], "version": "3.0.19" }, { "downloads": [ "https://github.com/stamatak/ExaML/archive/v3.0.20.tar.gz" ], "version": "3.0.20" }, { "downloads": [ "https://github.com/stamatak/ExaML/archive/v3.0.21.tar.gz" ], "version": "3.0.21" }, { "downloads": [ "https://github.com/stamatak/ExaML/archive/v3.0.22.tar.gz" ], "version": "3.0.22" } ] }, "exampm": { "alias": [], "categories": [ "proxy-app", "ecp-proxy-app" ], "dependencies": [ "cabana", "cmake", "cxx", "gmake", "kokkos", "mpi", "ninja", "silo" ], "downloads": [ "https://github.com/ECP-copa/ExaMPM.git" ], "homepages": [ "https://github.com/ECP-copa/ExaMPM" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "junghans", "sslattery", "streeve" ], "name": "exampm", "patches": [], "summary": "Exascale Material Point Method (MPM) Mini-App\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/ECP-copa/ExaMPM.git" } ], "version": "master" } ] }, "exasp2": { "alias": [], "categories": [ "proxy-app", "ecp-proxy-app" ], "dependencies": [ "blas", "bml", "c", "gmake", "lapack", "mpi" ], "downloads": [ "https://github.com/ECP-copa/ExaSP2/tarball/vdevelop", "https://github.com/ECP-copa/ExaSP2/tarball/v1.0", "https://github.com/ECP-copa/ExaSP2.git" ], "homepages": [ "https://github.com/ECP-copa/ExaSP2" ], "licenses": [], "maintainers": [ "junghans" ], "name": "exasp2", "patches": [], "summary": "ExaSP2 is a reference implementation of typical linear algebra\nalgorithms and workloads for a quantum molecular dynamics (QMD)\nelectronic structure code. The algorithm is based on a recursive second-\norder Fermi-Operator expansion method (SP2) and is tailored for density\nfunctional based tight-binding calculations of material systems. The SP2\nalgorithm variants are part of the Los Alamos Transferable Tight-binding\nfor Energetics (LATTE) code, based on a matrix expansion of the Fermi\noperator in a recursive series of generalized matrix-matrix\nmultiplications. It is created and maintained by Co-Design Center for\nParticle Applications (CoPA). The code is intended to serve as a vehicle\nfor co-design by allowing others to extend and/or reimplement as needed\nto test performance of new architectures, programming models, etc.\n", "version": [ { "downloads": [ "https://github.com/ECP-copa/ExaSP2/tarball/v1.0" ], "version": "1.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/ECP-copa/ExaSP2.git" } ], "version": "develop" } ] }, "exawind": { "alias": [], "categories": [ "ecp", "ecp-apps" ], "dependencies": [ "amr-wind", "c", "cmake", "cuda", "cxx", "fortran", "gmake", "hip", "hsa-rocr-dev", "kokkos-nvcc-wrapper", "llvm-amdgpu", "mpi", "nalu-wind", "ninja", "openfast", "tioga", "trilinos", "yaml-cpp" ], "downloads": [ "https://github.com/Exawind/exawind-driver.git" ], "homepages": [ "https://github.com/Exawind/exawind-driver" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "jrood-nrel" ], "name": "exawind", "patches": [], "summary": "Multi-application driver for Exawind project.\n", "version": [ { "repositories": [ { "commit": "85718893d2510c8a2e8c8e94c768ce6a67f94703", "type": "git", "url": "https://github.com/Exawind/exawind-driver.git" } ], "version": "1.0.0" }, { "repositories": [ { "commit": "c8823f19fc8d19ea051df0ff68780e56981a7f94", "type": "git", "url": "https://github.com/Exawind/exawind-driver.git" } ], "version": "1.1.0" }, { "repositories": [ { "commit": "4c49c7775c580b6bd2556e6c00fd13c08737d5eb", "type": "git", "url": "https://github.com/Exawind/exawind-driver.git" } ], "version": "1.2.0" }, { "repositories": [ { "commit": "d25aa549c7cbd9d6213541cd4b046bd9c0c54652", "type": "git", "url": "https://github.com/Exawind/exawind-driver.git" } ], "version": "2.0.0" }, { "repositories": [ { "commit": "b726a1128f02edb72f504130830d44622710225a", "type": "git", "url": "https://github.com/Exawind/exawind-driver.git" } ], "version": "2.1.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/Exawind/exawind-driver.git" } ], "version": "master" } ] }, "exaworks": { "alias": [], "categories": [], "dependencies": [ "flux-core", "flux-sched", "py-parsl", "py-psij-python", "py-radical-entk", "py-radical-gtod", "py-radical-pilot", "py-radical-saga", "py-radical-utils", "stc" ], "downloads": [], "homepages": [ "https://exaworks.org/" ], "licenses": [], "maintainers": [ "andre-merzky" ], "name": "exaworks", "patches": [], "summary": " Virtual package for the Exaworks SDK packages.\n", "version": [ { "downloads": [ [] ], "version": "0.1.0" } ] }, "exciting": { "alias": [], "categories": [], "dependencies": [ "blas", "c", "cxx", "fftw", "fortran", "gmake", "lapack", "mkl", "mpi", "scalapack" ], "downloads": [ "https://exciting.wdfiles.com/local--files/nitrogen-14/exciting.nitrogen-14.tar.gz", "https://exciting.wdfiles.com/local--files/nitrogen-oxygen/exciting.nitrogen-oxygen.tar.gz", "https://github.com/exciting/exciting.git" ], "homepages": [ "https://exciting-code.org/" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "exciting", "patches": [ "dfgather.patch when @14", "for_aarch64.patch when target=aarch64:" ], "summary": " exciting is a full-potential all-electron density-functional-theory\npackage implementing the families of linearized augmented planewave\nmethods. It can be applied to all kinds of materials, irrespective of\nthe atomic species in volved, and also allows for exploring the physics\nof core electrons. A particular focus are excited states within many-\nbody perturbation theory.\n", "version": [ { "downloads": [ "https://exciting.wdfiles.com/local--files/nitrogen-14/exciting.nitrogen-14.tar.gz" ], "version": "14" }, { "repositories": [ { "branch": "oxygen_release", "type": "git", "url": "https://github.com/exciting/exciting.git" } ], "version": "oxygen" } ] }, "exempi": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "cxx", "expat", "gmake", "gnuconfig", "iconv", "pkgconfig", "zlib-api" ], "downloads": [ "https://libopenraw.freedesktop.org/download/exempi-2.6.6.tar.bz2", "https://libopenraw.freedesktop.org/download/exempi-2.6.1.tar.bz2", "https://libopenraw.freedesktop.org/download/exempi-2.5.2.tar.bz2" ], "homepages": [ "https://libopenraw.freedesktop.org/wiki/Exempi" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "exempi", "patches": [], "summary": "exempi is a port of Adobe XMP SDK to work on UNIX and to be build with\nGNU automake. It includes XMPCore and XMPFiles, libexempi, a C-based API\nand exempi a command line tool.\n", "version": [ { "downloads": [ "https://libopenraw.freedesktop.org/download/exempi-2.5.2.tar.bz2" ], "version": "2.5.2" }, { "downloads": [ "https://libopenraw.freedesktop.org/download/exempi-2.6.1.tar.bz2" ], "version": "2.6.1" }, { "downloads": [ "https://libopenraw.freedesktop.org/download/exempi-2.6.6.tar.bz2" ], "version": "2.6.6" } ] }, "exiv2": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "expat", "gmake", "ninja", "zlib-api" ], "downloads": [ "https://github.com/Exiv2/exiv2/archive/v0.27.6.tar.gz", "https://github.com/Exiv2/exiv2/archive/v0.27.5.tar.gz", "https://github.com/Exiv2/exiv2/archive/v0.27.4.tar.gz", "https://github.com/Exiv2/exiv2/archive/v0.27.3.tar.gz", "https://github.com/Exiv2/exiv2/archive/v0.27.2.tar.gz" ], "homepages": [ "https://www.exiv2.org/" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "exiv2", "patches": [], "summary": "Exiv2 is a Cross-platform C++ library and a command line utility to\nmanage image metadata\n", "version": [ { "downloads": [ "https://github.com/Exiv2/exiv2/archive/v0.27.2.tar.gz" ], "version": "0.27.2" }, { "downloads": [ "https://github.com/Exiv2/exiv2/archive/v0.27.3.tar.gz" ], "version": "0.27.3" }, { "downloads": [ "https://github.com/Exiv2/exiv2/archive/v0.27.4.tar.gz" ], "version": "0.27.4" }, { "downloads": [ "https://github.com/Exiv2/exiv2/archive/v0.27.5.tar.gz" ], "version": "0.27.5" }, { "downloads": [ "https://github.com/Exiv2/exiv2/archive/v0.27.6.tar.gz" ], "version": "0.27.6" } ] }, "exmcutils": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://swift-lang.github.io/swift-t-downloads/spack/exmcutils-master.tar.gz", "https://swift-lang.github.io/swift-t-downloads/spack/exmcutils-0.6.4.tar.gz", "https://swift-lang.github.io/swift-t-downloads/spack/exmcutils-0.6.0.tar.gz", "https://swift-lang.github.io/swift-t-downloads/spack/exmcutils-0.5.7.tar.gz", "https://swift-lang.github.io/swift-t-downloads/spack/exmcutils-0.5.6.tar.gz", "https://github.com/swift-lang/swift-t.git" ], "homepages": [ "http://swift-lang.org/Swift-T" ], "licenses": [], "maintainers": [ "j-woz" ], "name": "exmcutils", "patches": [], "summary": "ExM C-Utils: Generic C utility library for ADLB/X and Swift/T\n", "version": [ { "downloads": [ "https://swift-lang.github.io/swift-t-downloads/spack/exmcutils-0.5.6.tar.gz" ], "version": "0.5.6" }, { "downloads": [ "https://swift-lang.github.io/swift-t-downloads/spack/exmcutils-0.5.7.tar.gz" ], "version": "0.5.7" }, { "downloads": [ "https://swift-lang.github.io/swift-t-downloads/spack/exmcutils-0.6.0.tar.gz" ], "version": "0.6.0" }, { "downloads": [ "https://swift-lang.github.io/swift-t-downloads/spack/exmcutils-0.6.4.tar.gz" ], "version": "0.6.4" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/swift-lang/swift-t.git" } ], "version": "master" } ] }, "exo": { "alias": [], "categories": [], "dependencies": [ "glib", "gmake", "gnuconfig", "gobject-introspection", "gtkplus", "intltool", "libxfce4ui", "libxfce4util", "perl-uri" ], "downloads": [ "https://archive.xfce.org/xfce/4.16/src/exo-4.18.0.tar.bz2", "https://archive.xfce.org/xfce/4.16/src/exo-4.16.0.tar.bz2" ], "homepages": [ "https://docs.xfce.org/xfce/exo/start" ], "licenses": [ "GPLv2" ], "maintainers": [ "teaguesterling" ], "name": "exo", "patches": [], "summary": "Helper applications for XFCE4\n", "version": [ { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/exo-4.16.0.tar.bz2" ], "version": "4.16.0" }, { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/exo-4.18.0.tar.bz2" ], "version": "4.18.0" } ] }, "exodusii": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "hdf5", "mpi", "netcdf-c", "ninja", "python" ], "downloads": [ "https://github.com/sandialabs/seacas/archive/refs/tags/vmaster.zip", "https://github.com/sandialabs/seacas/archive/refs/tags/v2025-08-19.zip", "https://github.com/sandialabs/seacas/archive/refs/tags/v2024-04-03.zip", "https://github.com/sandialabs/seacas/archive/refs/tags/v2024-03-11.zip", "https://github.com/sandialabs/seacas/archive/refs/tags/v2023-11-27.zip", "https://github.com/sandialabs/seacas/archive/refs/tags/v2023-05-30.zip", "https://github.com/sandialabs/seacas/archive/refs/tags/v2022-10-14.zip", "https://github.com/sandialabs/seacas/archive/refs/tags/v2022-08-01.zip", "https://github.com/sandialabs/seacas/archive/refs/tags/v2022-05-16.zip", "https://github.com/sandialabs/seacas/archive/refs/tags/v2022-03-04.zip", "https://github.com/sandialabs/seacas/archive/refs/tags/v2022-02-16.zip", "https://github.com/sandialabs/seacas/archive/refs/tags/v2022-01-27.zip", "https://github.com/sandialabs/seacas.git" ], "homepages": [ "https://sandialabs.github.io/seacas/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "gsjaardema" ], "name": "exodusii", "patches": [ "Fix-ioss-tpl.patch when @:2024-4-3" ], "summary": "Exodus II is a C++/Fortran library developed to store and retrieve data\nfor finite element analyses. It's used for preprocessing (problem\ndefinition), postprocessing (results visualization), and data transfer\nbetween codes. An Exodus II data file is a random access, machine\nindependent, binary file that is written and read via C, C++, or Fortran\nAPI routines. This package *only* installs the C and optionally Fortran\nlibrary for exodus. If you want the full suite of exodus-releated tools\nincluding the IOSS library, install the seacas package instead of this\npackage.\n", "version": [ { "downloads": [ "https://github.com/sandialabs/seacas/archive/refs/tags/v2022-01-27.zip" ], "version": "2022-01-27" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/refs/tags/v2022-02-16.zip" ], "version": "2022-02-16" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/refs/tags/v2022-03-04.zip" ], "version": "2022-03-04" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/refs/tags/v2022-05-16.zip" ], "version": "2022-05-16" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/refs/tags/v2022-08-01.zip" ], "version": "2022-08-01" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/refs/tags/v2022-10-14.zip" ], "version": "2022-10-14" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/refs/tags/v2023-05-30.zip" ], "version": "2023-05-30" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/refs/tags/v2023-11-27.zip" ], "version": "2023-11-27" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/refs/tags/v2024-03-11.zip" ], "version": "2024-03-11" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/refs/tags/v2024-04-03.zip" ], "version": "2024-04-03" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/refs/tags/v2025-08-19.zip" ], "version": "2025-08-19" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/sandialabs/seacas.git" } ], "version": "master" } ] }, "exonerate": { "alias": [], "categories": [], "dependencies": [ "c", "glib", "gmake", "gnuconfig", "pkgconfig" ], "downloads": [ "https://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/exonerate-2.4.0.tar.gz" ], "homepages": [ "https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "exonerate", "patches": [], "summary": "Pairwise sequence alignment of DNA and proteins\n", "version": [ { "downloads": [ "https://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/exonerate-2.4.0.tar.gz" ], "version": "2.4.0" } ] }, "exonerate-gff3": { "alias": [], "categories": [], "dependencies": [ "c", "glib", "gmake", "gnuconfig" ], "downloads": [ "https://github.com/hotdogee/exonerate-gff3/archive/2.3.0.tar.gz" ], "homepages": [ "https://github.com/hotdogee/exonerate-gff3/" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "exonerate-gff3", "patches": [], "summary": "This is an exonerate fork with added gff3 support. Original website with\nuser guides: http://www.ebi.ac.uk/~guy/exonerate/\n", "version": [ { "downloads": [ "https://github.com/hotdogee/exonerate-gff3/archive/2.3.0.tar.gz" ], "version": "2.3.0" } ] }, "expat": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "gnuconfig", "libbsd", "ninja" ], "downloads": [ "https://github.com/libexpat/libexpat/releases/download/R_2_2_9/expat-2.2.9.tar.bz2" ], "homepages": [ "https://libexpat.github.io/" ], "licenses": [ "MIT" ], "maintainers": [], "name": "expat", "patches": [], "summary": "Expat is an XML parser library written in C.\n", "version": [ { "downloads": [ "https://github.com/libexpat/libexpat/releases/download/R_2_7_2/expat-2.7.2.tar.bz2" ], "version": "2.7.2" }, { "downloads": [ "https://github.com/libexpat/libexpat/releases/download/R_2_7_3/expat-2.7.3.tar.bz2" ], "version": "2.7.3" } ] }, "expect": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "m4", "tcl" ], "downloads": [ "https://sourceforge.net/projects/expect/files/Expect/5.45.4/expect5.45.4.tar.gz/download", "https://sourceforge.net/projects/expect/files/Expect/5.45.3/expect5.45.3.tar.gz/download", "https://sourceforge.net/projects/expect/files/Expect/5.45/expect5.45.tar.gz/download" ], "homepages": [ "https://expect.sourceforge.net/" ], "licenses": [ "NIST-PD" ], "maintainers": [], "name": "expect", "patches": [ "xcode_12.patch when %apple-clang@12:", "expect_detect_tcl_private_header_os_x_mountain_lion.patch when @5.45:5.45.0", "func_proto.patch when %gcc@13:" ], "summary": "Expect is a tool for automating interactive applications such as telnet,\nftp, passwd, fsck, rlogin, tip, etc.\n", "version": [ { "downloads": [ "https://sourceforge.net/projects/expect/files/Expect/5.45/expect5.45.tar.gz/download" ], "version": "5.45" }, { "downloads": [ "https://sourceforge.net/projects/expect/files/Expect/5.45.3/expect5.45.3.tar.gz/download" ], "version": "5.45.3" }, { "downloads": [ "https://sourceforge.net/projects/expect/files/Expect/5.45.4/expect5.45.4.tar.gz/download" ], "version": "5.45.4" } ] }, "express": { "alias": [], "categories": [], "dependencies": [ "bamtools", "boost", "c", "cmake", "cxx", "gmake", "ninja", "protobuf", "zlib-api" ], "downloads": [ "https://github.com/adarob/eXpress/archive/1.5.3.zip", "https://github.com/adarob/eXpress/archive/1.5.2.zip", "https://github.com/adarob/eXpress/archive/1.5.1.zip" ], "homepages": [ "http://bio.math.berkeley.edu/eXpress/" ], "licenses": [ "Artistic-2.0" ], "maintainers": [], "name": "express", "patches": [ "gcc-6.patch when @:1.5.2 %gcc@6.0.0:", "gcc-6.patch when @:1.5.2 %fj" ], "summary": "eXpress is a streaming tool for quantifying the abundances of a set of\ntarget sequences from sampled subsequences.\n", "version": [ { "downloads": [ "https://github.com/adarob/eXpress/archive/1.5.1.zip" ], "version": "1.5.1" }, { "downloads": [ "https://github.com/adarob/eXpress/archive/1.5.2.zip" ], "version": "1.5.2" }, { "downloads": [ "https://github.com/adarob/eXpress/archive/1.5.3.zip" ], "version": "1.5.3" } ] }, "exprtk": { "alias": [], "categories": [], "dependencies": [ "cxx" ], "downloads": [ "https://github.com/ArashPartow/exprtk/archive/refs/tags/0.0.3.tar.gz", "https://github.com/ArashPartow/exprtk/archive/refs/tags/0.0.2.tar.gz", "https://github.com/ArashPartow/exprtk/archive/refs/tags/0.0.1.tar.gz", "https://github.com/ArashPartow/exprtk.git" ], "homepages": [ "https://www.partow.net/programming/exprtk/index.html" ], "licenses": [ "MIT" ], "maintainers": [ "arashpartow" ], "name": "exprtk", "patches": [], "summary": "ExprTk - C++ Mathematical Expression Toolkit Library\n", "version": [ { "downloads": [ "https://github.com/ArashPartow/exprtk/archive/refs/tags/0.0.1.tar.gz" ], "version": "0.0.1" }, { "downloads": [ "https://github.com/ArashPartow/exprtk/archive/refs/tags/0.0.2.tar.gz" ], "version": "0.0.2" }, { "downloads": [ "https://github.com/ArashPartow/exprtk/archive/refs/tags/0.0.3.tar.gz" ], "version": "0.0.3" } ] }, "extrae": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "binutils", "boost", "c", "cuda", "cxx", "dyninst", "elf", "elfutils", "fortran", "gettext", "gmake", "gnuconfig", "intel-oneapi-tbb", "libdwarf", "libtool", "libunwind", "libxml2", "m4", "mpi", "numactl", "papi" ], "downloads": [ "https://ftp.tools.bsc.es/extrae/extrae-4.2.3-src.tar.bz2", "https://ftp.tools.bsc.es/extrae/extrae-4.2.2-src.tar.bz2", "https://ftp.tools.bsc.es/extrae/extrae-4.2.1-src.tar.bz2", "https://ftp.tools.bsc.es/extrae/extrae-4.2.0-src.tar.bz2", "https://ftp.tools.bsc.es/extrae/extrae-4.1.7-src.tar.bz2", "https://ftp.tools.bsc.es/extrae/extrae-4.1.6-src.tar.bz2", "https://ftp.tools.bsc.es/extrae/extrae-4.1.5-src.tar.bz2", "https://ftp.tools.bsc.es/extrae/extrae-4.1.4-src.tar.bz2", "https://ftp.tools.bsc.es/extrae/extrae-4.1.3-src.tar.bz2", "https://ftp.tools.bsc.es/extrae/extrae-4.1.2-src.tar.bz2", "https://ftp.tools.bsc.es/extrae/extrae-4.0.6-src.tar.bz2", "https://ftp.tools.bsc.es/extrae/extrae-4.0.5-src.tar.bz2", "https://ftp.tools.bsc.es/extrae/extrae-4.0.4-src.tar.bz2", "https://ftp.tools.bsc.es/extrae/extrae-4.0.3-src.tar.bz2", "https://ftp.tools.bsc.es/extrae/extrae-3.8.3-src.tar.bz2", "https://ftp.tools.bsc.es/extrae/extrae-3.7.1-src.tar.bz2", "https://ftp.tools.bsc.es/extrae/extrae-3.4.1-src.tar.bz2" ], "homepages": [ "https://tools.bsc.es/extrae" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "extrae", "patches": [ "dyninst_instruction.patch when @:4.0.6+dyninst" ], "summary": "Extrae is the package devoted to generate tracefiles which can be\nanalyzed later by Paraver. Extrae is a tool that uses different\ninterposition mechanisms to inject probes into the target application so\nas to gather information regarding the application performance. 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Faiss contains algorithms that search in sets of vectors\nof any size, up to ones that possibly do not fit in RAM. It also\ncontains supporting code for evaluation and parameter tuning. Faiss is\nwritten in C++ with complete wrappers for Python/numpy. Some of the most\nuseful algorithms are implemented on the GPU. It is developed by\nFacebook AI Research.\n", "version": [ { "downloads": [ "https://github.com/facebookresearch/faiss/archive/v1.5.3.tar.gz" ], "version": "1.5.3" }, { "downloads": [ "https://github.com/facebookresearch/faiss/archive/v1.6.3.tar.gz" ], "version": "1.6.3" }, { "downloads": [ "https://github.com/facebookresearch/faiss/archive/v1.7.2.tar.gz" ], "version": "1.7.2" }, { "downloads": [ "https://github.com/facebookresearch/faiss/archive/v1.7.4.tar.gz" ], "version": "1.7.4" }, { "downloads": [ "https://github.com/facebookresearch/faiss/archive/v1.8.0.tar.gz" ], "version": "1.8.0" } ] }, "fakechroot": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://github.com/dex4er/fakechroot/releases/download/2.20.1/fakechroot-2.20.1.tar.gz", "https://github.com/dex4er/fakechroot/releases/download/2.20/fakechroot-2.20.tar.gz", "https://github.com/dex4er/fakechroot/releases/download/2.19/fakechroot-2.19.tar.gz" ], "homepages": [ "https://github.com/dex4er/fakechroot" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "fakechroot", "patches": [], "summary": "fakechroot runs a command in an environment were is additional\npossibility to use chroot(8) command without root privileges.This is\nuseful for allowing users to create own chrooted environment with\npossibility to install another packages without need for root\nprivileges.\n", "version": [ { "downloads": [ "https://github.com/dex4er/fakechroot/releases/download/2.19/fakechroot-2.19.tar.gz" ], "version": "2.19" }, { "downloads": [ "https://github.com/dex4er/fakechroot/releases/download/2.20/fakechroot-2.20.tar.gz" ], "version": "2.20" }, { "downloads": [ "https://github.com/dex4er/fakechroot/releases/download/2.20.1/fakechroot-2.20.1.tar.gz" ], "version": "2.20.1" } ] }, "faketime": { "alias": [], "categories": [], "dependencies": [ "c", "gmake" ], "downloads": [ "https://github.com/wolfcw/libfaketime/archive/refs/tags/v0.9.12.tar.gz", "https://github.com/wolfcw/libfaketime/archive/refs/tags/v0.9.10.tar.gz" ], "homepages": [ "https://github.com/wolfcw/libfaketime" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [ "wdconinc" ], "name": "faketime", "patches": [], "summary": "libfaketime modifies the system time for a single application.\n", "version": [ { "downloads": [ "https://github.com/wolfcw/libfaketime/archive/refs/tags/v0.9.10.tar.gz" ], "version": "0.9.10" }, { "downloads": [ "https://github.com/wolfcw/libfaketime/archive/refs/tags/v0.9.12.tar.gz" ], "version": "0.9.12" } ] }, "fakexrandr": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "libx11", "libxinerama", "libxrandr", "python" ], "downloads": [ "https://github.com/phillipberndt/fakexrandr.git" ], "homepages": [ "https://github.com/phillipberndt/fakexrandr" ], "licenses": [], "maintainers": [], "name": "fakexrandr", "patches": [], "summary": "This is a tool to cheat an X11 server to believe that there are more\nmonitors than there actually are.\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/phillipberndt/fakexrandr.git" } ], "version": "master" } ] }, "falco": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "gnuconfig", "htslib", "zlib-ng" ], "downloads": [ "https://github.com/smithlabcode/falco/releases/download/v1.2.1/falco-1.2.1.tar.gz" ], "homepages": [ "https://github.com/smithlabcode/falco" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "falco", "patches": [], "summary": "A C++ drop-in replacement of FastQC to assess the quality of sequence\nread data\n", "version": [ { "downloads": [ "https://github.com/smithlabcode/falco/releases/download/v1.2.1/falco-1.2.1.tar.gz" ], "version": "1.2.1" } ] }, "falcon": { "alias": [], "categories": [], "dependencies": [ "c", "pacbio-daligner", "pacbio-damasker", "pacbio-dazz-db", "pacbio-dextractor", "py-networkx", "py-pip", "py-pypeflow", "py-setuptools", "py-wheel", "python", "python-venv" ], "downloads": [ "https://github.com/PacificBiosciences/FALCON.git" ], "homepages": [ "https://github.com/PacificBiosciences/FALCON" ], "licenses": [], "maintainers": [], "name": "falcon", "patches": [ "Py_None.patch when ^python@3:" ], "summary": "Falcon: a set of tools for fast aligning long reads for consensus and\nassembly. The Falcon tool kit is a set of simple code collection which I\nuse for studying efficient assembly algorithm for haploid and diploid\ngenomes. It has some back-end code implemented in C for speed and some\nsimple front-end written in Python for convenience.\n", "version": [ { "repositories": [ { "commit": "86cec6157291679095ea6080b0cde6561eccc041", "type": "git", "url": "https://github.com/PacificBiosciences/FALCON.git" } ], "version": "2017-05-30" } ] }, "fann": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/libfann/fann/archive/2.2.0.tar.gz" ], "homepages": [ "https://leenissen.dk/fann/wp/" ], "licenses": [ "LGPL-2.0-or-later" ], "maintainers": [], "name": "fann", "patches": [], "summary": " Fast Artificial Neural Network Library is a free open source neural\nnetwork library, which implements multilayer artificial neural networks\nin C with support for both fully connected and sparsely connected\nnetworks. Cross-platform execution in both fixed and floating point are\nsupported. It includes a framework for easy handling of training data\nsets. It is easy to use, versatile, well documented, and fast. Bindings\nto more than 20 programming languages are available. An easy to read\nintroduction article and a reference manual accompanies the library with\nexamples and recommendations on how to use the library. Several\ngraphical user interfaces are also available for the library.\n", "version": [ { "downloads": [ "https://github.com/libfann/fann/archive/2.2.0.tar.gz" ], "version": "2.2.0" } ] }, "faodel": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "boost", "c", "cmake", "cxx", "gmake", "googletest", "hdf5", "libfabric", "mpi", "ninja" ], "downloads": [ "https://github.com/sandialabs/faodel/archive/vmaster.tar.gz", "https://github.com/sandialabs/faodel/archive/v1.2108.1.tar.gz", "https://github.com/sandialabs/faodel/archive/v1.1906.2.tar.gz", "https://github.com/sandialabs/faodel/archive/v1.1906.1.tar.gz", "https://github.com/sandialabs/faodel/archive/v1.1811.2.tar.gz", "https://github.com/sandialabs/faodel/archive/v1.1811.1.tar.gz", "https://github.com/sandialabs/faodel/archive/v1.1803.1.tar.gz", "https://github.com/sandialabs/faodel.git" ], "homepages": [ "https://github.com/sandialabs/faodel" ], "licenses": [ "MIT" ], "maintainers": [ "craigulmer", "tkordenbrock" ], "name": "faodel", "patches": [ "array.patch when @1.1803.1", "faodel_mpi.patch when @1.1811.1~mpi", "faodel_sbl.patch when @1.1811.1 logging=sbl", "lambda-capture-f0267fc.patch when @1.1906.1", "ugni-target-redef-b67e856.patch when @1.1906.1" ], "summary": "Flexible, Asynchronous, Object Data-Exchange Libraries\n", "version": [ { "downloads": [ "https://github.com/sandialabs/faodel/archive/v1.1803.1.tar.gz" ], "version": "1.1803.1" }, { "downloads": [ "https://github.com/sandialabs/faodel/archive/v1.1811.1.tar.gz" ], "version": "1.1811.1" }, { "downloads": [ "https://github.com/sandialabs/faodel/archive/v1.1811.2.tar.gz" ], "version": "1.1811.2" }, { "downloads": [ "https://github.com/sandialabs/faodel/archive/v1.1906.1.tar.gz" ], "version": "1.1906.1" }, { "downloads": [ "https://github.com/sandialabs/faodel/archive/v1.1906.2.tar.gz" ], "version": "1.1906.2" }, { "downloads": [ "https://github.com/sandialabs/faodel/archive/v1.2108.1.tar.gz" ], "version": "1.2108.1" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/sandialabs/faodel.git" } ], "version": "master" } ] }, "fargparse": { "alias": [], "categories": [], "dependencies": [ "cmake", "fortran", "gftl", "gftl-shared", "gmake", "ninja" ], "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/vdevelop.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/vmain.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.10.0.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.9.0.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.8.0.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.7.0.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.6.0.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.5.0.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.4.2.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.4.1.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.3.1.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.3.0.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.2.0.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.1.2.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/fArgParse.git" ], "homepages": [ "https://github.com/Goddard-Fortran-Ecosystem/fArgParse" ], "licenses": [], "maintainers": [ "mathomp4", "tclune" ], "name": "fargparse", "patches": [], "summary": "Command line argument parsing for Fortran\n", "version": [ { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.10.0.tar.gz" ], "version": "1.10.0" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.4.2.tar.gz" ], "version": "1.4.2" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.5.0.tar.gz" ], "version": "1.5.0" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.6.0.tar.gz" ], "version": "1.6.0" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.7.0.tar.gz" ], "version": "1.7.0" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.8.0.tar.gz" ], "version": "1.8.0" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/fArgParse/archive/refs/tags/v1.9.0.tar.gz" ], "version": "1.9.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/Goddard-Fortran-Ecosystem/fArgParse.git" } ], "version": "develop" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/Goddard-Fortran-Ecosystem/fArgParse.git" } ], "version": "main" } ] }, "fasd": { "alias": [], "categories": [], "dependencies": [ "gmake" ], "downloads": [ "https://github.com/clvv/fasd/archive/refs/tags/1.0.1.tar.gz", "https://github.com/clvv/fasd.git" ], "homepages": [ "https://github.com/clvv/fasd" ], "licenses": [ "MIT" ], "maintainers": [], "name": "fasd", "patches": [], "summary": "Fasd (pronounced similar to \"fast\") is a command-line productivity\nbooster. Fasd offers quick access to files and directories for POSIX\nshells.\n", "version": [ { "downloads": [ "https://github.com/clvv/fasd/archive/refs/tags/1.0.1.tar.gz" ], "version": "1.0.1" } ] }, "fast-float": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "doctest", "gmake", "ninja" ], "downloads": [ "https://github.com/fastfloat/fast_float/archive/refs/tags/v8.1.0.tar.gz", "https://github.com/fastfloat/fast_float/archive/refs/tags/v8.0.2.tar.gz", "https://github.com/fastfloat/fast_float/archive/refs/tags/v8.0.1.tar.gz", "https://github.com/fastfloat/fast_float/archive/refs/tags/v8.0.0.tar.gz", "https://github.com/fastfloat/fast_float/archive/refs/tags/v7.0.0.tar.gz", "https://github.com/fastfloat/fast_float/archive/refs/tags/v6.1.6.tar.gz", "https://github.com/fastfloat/fast_float/archive/refs/tags/v6.1.5.tar.gz", "https://github.com/fastfloat/fast_float/archive/refs/tags/v6.1.4.tar.gz" ], "homepages": [ "https://github.com/fastfloat/fast_float" ], "licenses": [ "Apache-2.0 OR BSL-1.0 OR MIT" ], "maintainers": [], "name": "fast-float", "patches": [ "https://github.com/fastfloat/fast_float/commit/a7ed4e89c7444b5c8585453fc6d015c0efdf8654.patch?full_index=1 when @:6.1.5" ], "summary": "Fast and exact implementation of the C++ from_chars functions for number\ntypes.\n", "version": [ { "downloads": [ "https://github.com/fastfloat/fast_float/archive/refs/tags/v6.1.4.tar.gz" ], "version": "6.1.4" }, { "downloads": [ "https://github.com/fastfloat/fast_float/archive/refs/tags/v6.1.5.tar.gz" ], "version": "6.1.5" }, { "downloads": [ "https://github.com/fastfloat/fast_float/archive/refs/tags/v6.1.6.tar.gz" ], "version": "6.1.6" }, { "downloads": [ "https://github.com/fastfloat/fast_float/archive/refs/tags/v7.0.0.tar.gz" ], "version": "7.0.0" }, { "downloads": [ "https://github.com/fastfloat/fast_float/archive/refs/tags/v8.0.0.tar.gz" ], "version": "8.0.0" }, { "downloads": [ "https://github.com/fastfloat/fast_float/archive/refs/tags/v8.0.1.tar.gz" ], "version": "8.0.1" }, { "downloads": [ "https://github.com/fastfloat/fast_float/archive/refs/tags/v8.0.2.tar.gz" ], "version": "8.0.2" }, { "downloads": [ "https://github.com/fastfloat/fast_float/archive/refs/tags/v8.1.0.tar.gz" ], "version": "8.1.0" } ] }, "fast-global-file-status": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "cxx", "elf", "gmake", "gnuconfig", "libtool", "mount-point-attributes", "mpi", "mrnet", "openssl" ], "downloads": [ "https://github.com/LLNL/FastGlobalFileStatus/files/2271592/fastglobalfilestatus-master.tar.gz", "https://github.com/LLNL/FastGlobalFileStatus/releases/download/v1.1.1/fastglobalfilestatus-1.1.1.tar.gz", "https://github.com/LLNL/FastGlobalFileStatus/files/2271592/fastglobalfilestatus-1.1.tar.gz", "https://github.com/LLNL/FastGlobalFileStatus.git" ], "homepages": [ "https://github.com/LLNL/FastGlobalFileStatus" ], "licenses": [], "maintainers": [ "lee218llnl" ], "name": "fast-global-file-status", "patches": [], "summary": "provides a scalable mechanism to retrieve such information of a file,\nincluding its degree of distribution or replication and consistency.\n", "version": [ { "downloads": [ "https://github.com/LLNL/FastGlobalFileStatus/files/2271592/fastglobalfilestatus-1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ "https://github.com/LLNL/FastGlobalFileStatus/releases/download/v1.1.1/fastglobalfilestatus-1.1.1.tar.gz" ], "version": "1.1.1" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/LLNL/FastGlobalFileStatus.git" } ], "version": "master" } ] }, "fasta": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "zlib-api" ], "downloads": [ "https://github.com/wrpearson/fasta36/archive/refs/tags/v36.3.8h_04-May-2020.tar.gz", "https://github.com/wrpearson/fasta36/archive/fasta-v36.3.8g.tar.gz" ], "homepages": [ "https://fasta.bioch.virginia.edu/fasta_www2/fasta_list2.shtml" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "fasta", "patches": [], "summary": "The FASTA programs find regions of local or global similarity between\nProtein or DNA sequences, either by searching Protein or DNA databases,\nor by identifying local duplications within a sequence. Other programs\nprovide information on the statistical significance of an alignment.\nLike BLAST, FASTA can be used to infer functional and evolutionary\nrelationships between sequences as well as help identify members of gene\nfamilies.\n", "version": [ { "downloads": [ "https://github.com/wrpearson/fasta36/archive/fasta-v36.3.8g.tar.gz" ], "version": "36.3.8g" }, { "downloads": [ "https://github.com/wrpearson/fasta36/archive/refs/tags/v36.3.8h_04-May-2020.tar.gz" ], "version": "36.3.8h_2020-05-04" } ] }, "fastani": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "cmake", "cxx", "gmake", "gnuconfig", "gsl", "libtool", "m4", "ninja", "zlib-api" ], "downloads": [ "https://github.com/ParBLiSS/FastANI/archive/v1.34.tar.gz", "https://github.com/ParBLiSS/FastANI/archive/v1.33.tar.gz" ], "homepages": [ "https://github.com/ParBLiSS/FastANI" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "snehring" ], "name": "fastani", "patches": [], "summary": "Fast, alignment-free computation of whole-genome Average Nucleotide\nIdentity (ANI)\n", "version": [ { "downloads": [ "https://github.com/ParBLiSS/FastANI/archive/v1.33.tar.gz" ], "version": "1.33" }, { "downloads": [ "https://github.com/ParBLiSS/FastANI/archive/v1.34.tar.gz" ], "version": "1.34" } ] }, "fastdb": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake" ], "downloads": [ "https://sourceforge.net/projects/fastdb/files/fastdb/3.75/fastdb-3.75.tar.gz", "https://sourceforge.net/projects/fastdb/files/fastdb/3.74/fastdb-3.74.tar.gz" ], "homepages": [ "https://sourceforge.net/projects/fastdb/" ], "licenses": [], "maintainers": [], "name": "fastdb", "patches": [ "fastdb-fmax-fmin.patch" ], "summary": "Object-Relational Main-Memory Embedded Database system tightly\nintegrated with C++ language.\n", "version": [ { "downloads": [ "https://sourceforge.net/projects/fastdb/files/fastdb/3.74/fastdb-3.74.tar.gz" ], "version": "3.74" }, { "downloads": [ "https://sourceforge.net/projects/fastdb/files/fastdb/3.75/fastdb-3.75.tar.gz" ], "version": "3.75" } ] }, "fastdfs": { "alias": [], "categories": [], "dependencies": [ "c", "libfastcommon", "perl" ], "downloads": [ "https://github.com/happyfish100/fastdfs/archive/V6.05.tar.gz", "https://github.com/happyfish100/fastdfs/archive/V6.04.tar.gz", "https://github.com/happyfish100/fastdfs/archive/V6.03.tar.gz", "https://github.com/happyfish100/fastdfs/archive/V6.02.tar.gz", "https://github.com/happyfish100/fastdfs/archive/V6.01.tar.gz" ], "homepages": [ "https://github.com/happyfish100/fastdfs" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "fastdfs", "patches": [], "summary": " FastDFS is an open source high performance distributed file system.\nIt's major functions include: file storing, file syncing and file\naccessing (file uploading and file downloading), and it can resolve the\nhigh capacity and load balancing problem. 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"https://github.com/FEniCS/basix/archive/v0.9.0.tar.gz", "https://github.com/FEniCS/basix/archive/v0.8.0.tar.gz", "https://github.com/FEniCS/basix.git" ], "homepages": [ "https://github.com/FEniCS/basix" ], "licenses": [ "MIT" ], "maintainers": [ "chrisrichardson", "garth-wells", "jhale", "mscroggs" ], "name": "fenics-basix", "patches": [], "summary": "Basix is a finite element definition and tabulation runtime library\n", "version": [ { "downloads": [ "https://github.com/FEniCS/basix/archive/v0.10.0.tar.gz" ], "version": "0.10.0" }, { "downloads": [ "https://github.com/FEniCS/basix/archive/v0.8.0.tar.gz" ], "version": "0.8.0" }, { "downloads": [ "https://github.com/FEniCS/basix/archive/v0.9.0.tar.gz" ], "version": "0.9.0" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/FEniCS/basix.git" } ], "version": "main" } ] }, "fenics-dolfinx": { "alias": [], "categories": [], "dependencies": [ "adios2", "boost", "c", "catch2", "cmake", "cxx", "fenics-basix", "fenics-ufcx", "gmake", "hdf5", "kahip", "mpi", "ninja", "parmetis", "petsc", "pkgconfig", "pugixml", "py-fenics-ffcx", "scotch", "slepc", "spdlog" ], "downloads": [ "https://github.com/FEniCS/dolfinx/archive/vmain.tar.gz", "https://github.com/FEniCS/dolfinx/archive/v0.9.0.tar.gz", "https://github.com/FEniCS/dolfinx/archive/v0.8.0.tar.gz", "https://github.com/FEniCS/dolfinx.git" ], "homepages": [ "https://github.com/FEniCS/dolfinx" ], "licenses": [ "LGPL-3.0-or-later" ], "maintainers": [ "chrisrichardson", "garth-wells", "jhale", "nate-sime" ], "name": "fenics-dolfinx", "patches": [], "summary": "Next generation FEniCS problem solving environment.\n", "version": [ { "downloads": [ "https://github.com/FEniCS/dolfinx/archive/v0.8.0.tar.gz" ], "version": "0.8.0" }, { "downloads": [ "https://github.com/FEniCS/dolfinx/archive/v0.9.0.tar.gz" ], "version": "0.9.0" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/FEniCS/dolfinx.git" } ], "version": "main" } ] }, "fenics-ufcx": { "alias": [], "categories": [], "dependencies": [ "cmake", "gmake", "ninja" ], "downloads": [ "https://github.com/FEniCS/ffcx/archive/vmain.tar.gz", "https://github.com/FEniCS/ffcx/archive/v0.10.0.tar.gz", "https://github.com/FEniCS/ffcx/archive/v0.9.0.tar.gz", "https://github.com/FEniCS/ffcx/archive/v0.8.0.tar.gz", "https://github.com/FEniCS/ffcx.git" ], "homepages": [ "https://github.com/FEniCS/ffcx" ], "licenses": [ "LGPL-3.0-or-later" ], "maintainers": [ "chrisrichardson", "garth-wells", "jhale", "ma595" ], "name": "fenics-ufcx", "patches": [], "summary": "FFCx provides the ufcx.h interface header for generated finite element\nkernels, used by DOLFINx. ufcx.h can be installed from the FFCx repo\nwithout a Python build or runtime dependency.\n", "version": [ { "downloads": [ "https://github.com/FEniCS/ffcx/archive/v0.10.0.tar.gz" ], "version": "0.10.0" }, { "downloads": [ 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"homepages": [ "https://feqparse.fluidnumerics.com" ], "licenses": [ "3-Clause BSD" ], "maintainers": [ "fluidnumerics-joe" ], "name": "feq-parse", "patches": [], "summary": "An equation parser Fortran class that is used to interpret and evaluate\nfunctions provided as strings.\n", "version": [ { "downloads": [ "https://github.com/FluidNumerics/feq-parse/archive/v1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://github.com/FluidNumerics/feq-parse/archive/v1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://github.com/FluidNumerics/feq-parse/archive/v2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://github.com/FluidNumerics/feq-parse/archive/v2.0.3.tar.gz" ], "version": "2.0.3" }, { "downloads": [ "https://github.com/FluidNumerics/feq-parse/archive/v2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://github.com/FluidNumerics/feq-parse/archive/v2.2.0.tar.gz" ], "version": "2.2.0" }, { "downloads": [ 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"fermikit", "patches": [ "ksw_for_aarch64.patch when target=aarch64:" ], "summary": "De novo assembly based variant calling pipeline for Illumina short reads\n", "version": [ { "repositories": [ { "commit": "bf9c7112221577ba110665bddca8f1987250bdc7", "type": "git", "url": "https://github.com/lh3/fermikit.git" } ], "version": "2017-11-7" } ] }, "fermisciencetools": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "fortran" ], "downloads": [ "https://fermi.gsfc.nasa.gov/ssc/data/analysis/software/v11r5p3/ScienceTools-v11r5p3-fssc-20180124-x86_64-unknown-linux-gnu-libc2.17.tar.gz" ], "homepages": [ "https://fermi.gsfc.nasa.gov/ssc/data/analysis/software/" ], "licenses": [], "maintainers": [], "name": "fermisciencetools", "patches": [], "summary": "The Fermi Science Tools consists of the basic tools necessary to analyze\nFermi data. This is the binary version for Linux x86_64 with libc-2.17.\n", "version": [ { "downloads": [ "https://fermi.gsfc.nasa.gov/ssc/data/analysis/software/v11r5p3/ScienceTools-v11r5p3-fssc-20180124-x86_64-unknown-linux-gnu-libc2.17.tar.gz" ], "version": "11r5p3" } ] }, "ferret": { "alias": [], "categories": [], "dependencies": [ "c", "curl", "cxx", "fortran", "gmake", "hdf5", "libx11", "netcdf-c", "netcdf-fortran", "readline", "zlib-api" ], "downloads": [ "https://github.com/NOAA-PMEL/Ferret/archive/v7.6.0.tar.gz" ], "homepages": [ "https://ferret.pmel.noaa.gov/Ferret/home" ], "licenses": [ "Unlicense" ], "maintainers": [ "RemiLacroix-IDRIS" ], "name": "ferret", "patches": [ "https://github.com/NOAA-PMEL/Ferret/commit/c7eb70a0b17045c8ca7207d586bfea77a5340668.patch?full_index=1 when @:6" ], "summary": "Ferret is an interactive computer visualization and analysis environment\ndesigned to meet the needs of oceanographers and meteorologists\nanalyzing large and complex gridded data sets.\n", "version": [ { "downloads": [ "ftp://ftp.pmel.noaa.gov/ferret/pub/source/fer_source.v696.tar.gz" ], "version": "6.96" }, { "downloads": [ "ftp://ftp.pmel.noaa.gov/ferret/pub/source/fer_source.v72.tar.gz" ], "version": "7.2" }, { "downloads": [ "https://github.com/NOAA-PMEL/Ferret/archive/v7.3.tar.gz" ], "version": "7.3" }, { "downloads": [ "https://github.com/NOAA-PMEL/Ferret/archive/v7.4.tar.gz" ], "version": "7.4" }, { "downloads": [ "https://github.com/NOAA-PMEL/Ferret/archive/v7.5.0.tar.gz" ], "version": "7.5.0" }, { "downloads": [ "https://github.com/NOAA-PMEL/Ferret/archive/v7.6.0.tar.gz" ], "version": "7.6.0" } ] }, "feynhiggs": { "alias": [], "categories": [ "hep" ], "dependencies": [ "c", "cxx", "fortran", "gmake", "gnuconfig" ], "downloads": [ "https://lcgpackages.web.cern.ch/tarFiles/sources/MCGeneratorsTarFiles/FeynHiggs-2.18.1.tar.gz" ], "homepages": [ "https://wwwth.mpp.mpg.de/members/heinemey/feynhiggs/cFeynHiggs.html" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [ "vvolkl" ], "name": "feynhiggs", "patches": [], "summary": "FeynHiggs is a Fortran code for the (diagrammatic/EFT/hybrid)\ncalculation of the masses, mixings and much more of the Higgs bosons in\nthe MSSM with real/complex parameters at the highest level of accuracy.\n", "version": [ { "downloads": [ "https://lcgpackages.web.cern.ch/tarFiles/sources/MCGeneratorsTarFiles/FeynHiggs-2.18.1.tar.gz" ], "version": "2.18.1" } ] }, "ffb": { "alias": [], "categories": [], "dependencies": [ "blas", "c", "cxx", "fortran", "gmake", "mpi", "scalapack" ], "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/FrontFlow_blue.8.1.tar.gz" ], "homepages": [ "http://www.ciss.iis.u-tokyo.ac.jp/dl/index.php" ], "licenses": [], "maintainers": [], "name": "ffb", "patches": [ "revocap_refiner.patch", "revocap_refiner-size_t.patch", "fortran-format.patch", "xvx.patch", "gffv3tr.patch" ], "summary": "Computational Fluid Dynamics Software for aeroacoustics\n", "version": [ { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/FrontFlow_blue.8.1.tar.gz" ], "version": "8.1" } ] }, "fflas-ffpack": { "alias": [], "categories": [], "dependencies": [ "blas", "c", "cxx", "givaro", "gmake", "gnuconfig", "lapack", "pkgconfig" ], "downloads": [ "https://github.com/linbox-team/fflas-ffpack/releases/download/v2.5.0/fflas-ffpack-2.5.0.tar.gz" ], "homepages": [ "https://linbox-team.github.io/fflas-ffpack/" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [ "d-torrance" ], "name": "fflas-ffpack", "patches": [], "summary": "FFLAS-FFPACK is a library for dense linear algebra over finite fields,\nproviding high-performance implementations of classical and fast matrix\nalgorithms (e.g., Gaussian elimination, rank, determinant,\nminimal/characteristic polynomials) using Givaro for finite field\narithmetic.\n", "version": [ { "downloads": [ "https://github.com/linbox-team/fflas-ffpack/releases/download/v2.5.0/fflas-ffpack-2.5.0.tar.gz" ], "version": "2.5.0" } ] }, "ffmpeg": { "alias": [], "categories": [], "dependencies": [ "alsa-lib", "aom", "bzip2", "c", "cxx", "fontconfig", "freetype", "fribidi", "gmake", "gnuconfig", "iconv", "lame", "libssh", "libvorbis", "libvpx", "libwebp", "libxml2", "libxv", "libzmq", "nasm", "openjpeg", "openssl", "opus", "pkgconfig", "sdl2", "snappy", "speex", "texinfo", "x264", "xz", "zlib-api" ], "downloads": [ "https://ffmpeg.org/releases/ffmpeg-master.tar.bz2", "https://ffmpeg.org/releases/ffmpeg-7.1.tar.bz2", "https://ffmpeg.org/releases/ffmpeg-7.0.2.tar.bz2", "https://ffmpeg.org/releases/ffmpeg-7.0.tar.bz2", "https://ffmpeg.org/releases/ffmpeg-6.1.1.tar.bz2", "https://ffmpeg.org/releases/ffmpeg-6.0.tar.bz2", "https://ffmpeg.org/releases/ffmpeg-5.1.4.tar.bz2", "https://ffmpeg.org/releases/ffmpeg-5.1.3.tar.bz2", "https://ffmpeg.org/releases/ffmpeg-5.1.2.tar.bz2", "https://ffmpeg.org/releases/ffmpeg-4.4.4.tar.bz2", "https://ffmpeg.org/releases/ffmpeg-4.4.1.tar.bz2", 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"downloads": [ "http://www.ffte.jp/ffte-7.0.tgz", "http://www.ffte.jp/ffte-6.0.tgz", "http://www.ffte.jp/ffte-5.0.tgz", "http://www.ffte.jp/ffte-4.0.tgz", "http://www.ffte.jp/ffte-3.0.tgz", "http://www.ffte.jp/ffte-2.0.tgz", "http://www.ffte.jp/ffte-1.0.tgz" ], "homepages": [ "http://www.ffte.jp/" ], "licenses": [], "maintainers": [ "luszczek" ], "name": "ffte", "patches": [], "summary": "Fastest Fourier Transform in the East. Provides FFT for powers of 2, 3,\nand 5 lengths in one, two, and three dimensions. Support for vector\nhardware, MPI, and CUDA Fortran is also included.\n", "version": [ { "downloads": [ "http://www.ffte.jp/ffte-1.0.tgz" ], "version": "1.0" }, { "downloads": [ "http://www.ffte.jp/ffte-2.0.tgz" ], "version": "2.0" }, { "downloads": [ "http://www.ffte.jp/ffte-3.0.tgz" ], "version": "3.0" }, { "downloads": [ "http://www.ffte.jp/ffte-4.0.tgz" ], "version": "4.0" }, { "downloads": [ "http://www.ffte.jp/ffte-5.0.tgz" ], "version": "5.0" }, { "downloads": [ "http://www.ffte.jp/ffte-6.0.tgz" ], "version": "6.0" }, { "downloads": [ "http://www.ffte.jp/ffte-7.0.tgz" ], "version": "7.0" } ] }, "fftw": { "alias": [ { "alias_for": "fftw@2.1.5", "name": "fftw-api" }, { "alias_for": "fftw@3:", "name": "fftw-api" } ], "categories": [], "dependencies": [ "autoconf", "automake", "c", "fortran", "gmake", "gnuconfig", "libtool", "llvm-openmp", "mpi" ], "downloads": [ "https://www.fftw.org/fftw-3.3.10.tar.gz", "https://www.fftw.org/fftw-3.3.9.tar.gz", "https://www.fftw.org/fftw-3.3.8.tar.gz", "https://www.fftw.org/fftw-3.3.7.tar.gz", "https://www.fftw.org/fftw-3.3.6-pl2.tar.gz", "https://www.fftw.org/fftw-3.3.5.tar.gz", "https://www.fftw.org/fftw-3.3.4.tar.gz", "https://www.fftw.org/fftw-2.1.5.tar.gz" ], "homepages": [ "https://www.fftw.org" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "fftw", "patches": [ "pfft-3.3.9.patch when @3.3.9:+pfft_patches", "https://github.com/FFTW/fftw3/commit/f69fef7aa546d4477a2a3fd7f13fa8b2f6c54af7.patch?full_index=1 when @3.3.7:", "pfft-3.3.5.patch when @3.3.5:3.3.8+pfft_patches", "pfft-3.3.4.patch when @3.3.4+pfft_patches", "intel-configure.patch when @3:3.3.8 %intel" ], "summary": "FFTW is a C subroutine library for computing the discrete Fourier\ntransform (DFT) in one or more dimensions, of arbitrary input size, and\nof both real and complex data (as well as of even/odd data, i.e. the\ndiscrete cosine/sine transforms or DCT/DST). We believe that FFTW, which\nis free software, should become the FFT library of choice for most\napplications.\n", "version": [ { "downloads": [ "https://www.fftw.org/fftw-2.1.5.tar.gz" ], "version": "2.1.5" }, { "downloads": [ "https://www.fftw.org/fftw-3.3.10.tar.gz" ], "version": "3.3.10" }, { "downloads": [ "https://www.fftw.org/fftw-3.3.4.tar.gz" ], "version": "3.3.4" }, { "downloads": [ "https://www.fftw.org/fftw-3.3.5.tar.gz" ], "version": "3.3.5" }, { "downloads": [ "https://www.fftw.org/fftw-3.3.6-pl2.tar.gz" ], "version": "3.3.6-pl2" }, { "downloads": [ "https://www.fftw.org/fftw-3.3.7.tar.gz" ], "version": "3.3.7" }, { "downloads": [ "https://www.fftw.org/fftw-3.3.8.tar.gz" ], "version": "3.3.8" }, { "downloads": [ "https://www.fftw.org/fftw-3.3.9.tar.gz" ], "version": "3.3.9" } ] }, "fftw-api": { "alias": [ { "alias_for": "nvpl-fft", "name": "fftw-api" } ], "categories": [], "dependencies": [], "downloads": [ 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"https://github.com/spiral-software/fftx/archive/refs/tags/1.1.2.tar.gz", "https://github.com/spiral-software/fftx/archive/refs/tags/1.1.1.tar.gz", "https://github.com/spiral-software/fftx/archive/refs/tags/1.1.0.tar.gz", "https://github.com/spiral-software/fftx/archive/refs/tags/1.0.3.tar.gz", "https://github.com/spiral-software/fftx.git" ], "homepages": [ "https://spiralgen.com" ], "licenses": [ "BSD-3-Clause-LBNL" ], "maintainers": [ "spiralgen" ], "name": "fftx", "patches": [], "summary": "FFTX is the exascale follow-on to the FFTW open source discrete FFT\npackage for executing the Fast Fourier Transform as well as higher-level\noperations composed of linear operations combined with DFT transforms.\n", "version": [ { "downloads": [ "https://github.com/spiral-software/fftx/archive/refs/tags/1.0.3.tar.gz" ], "version": "1.0.3" }, { "downloads": [ "https://github.com/spiral-software/fftx/archive/refs/tags/1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ 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selected\nFortran utility libraries, extracted from the IFS/Arpege model.\n", "version": [ { "downloads": [ "https://github.com/ecmwf-ifs/fiat/archive/1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://github.com/ecmwf-ifs/fiat/archive/1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://github.com/ecmwf-ifs/fiat/archive/1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://github.com/ecmwf-ifs/fiat/archive/1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://github.com/ecmwf-ifs/fiat/archive/1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://github.com/ecmwf-ifs/fiat/archive/1.5.1.tar.gz" ], "version": "1.5.1" }, { "downloads": [ "https://github.com/ecmwf-ifs/fiat/archive/1.6.1.tar.gz" ], "version": "1.6.1" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/ecmwf-ifs/fiat.git" } ], "version": "main" } ] }, "fides": { "alias": [], "categories": [], "dependencies": [ 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As with most of my\nprograms, it was written for my own needs so may not be as polished and\nfeature-complete as a commercial program. 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It is also\nbelieved a C version may help provide schema parsing to other language\ninterfaces that find interfacing with C easier than C++.\n", "version": [ { "downloads": [ "https://github.com/dvidelabs/flatcc/archive/v0.4.1.tar.gz" ], "version": "0.4.1" }, { "downloads": [ "https://github.com/dvidelabs/flatcc/archive/v0.4.2.tar.gz" ], "version": "0.4.2" }, { "downloads": [ "https://github.com/dvidelabs/flatcc/archive/v0.4.3.tar.gz" ], "version": "0.4.3" }, { "downloads": [ "https://github.com/dvidelabs/flatcc/archive/v0.5.0.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://github.com/dvidelabs/flatcc/archive/v0.5.1.tar.gz" ], "version": "0.5.1" }, { "downloads": [ "https://github.com/dvidelabs/flatcc/archive/v0.5.2.tar.gz" ], "version": "0.5.2" }, { "downloads": [ "https://github.com/dvidelabs/flatcc/archive/v0.5.3.tar.gz" ], "version": "0.5.3" }, { "downloads": [ "https://github.com/dvidelabs/flatcc/archive/v0.6.1.tar.gz" ], "version": "0.6.1" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/dvidelabs/flatcc.git" } ], "version": "master" } ] }, "flcl": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "fortran", "gmake", "kokkos", "ninja" ], "downloads": [ "https://github.com/kokkos/kokkos-fortran-interop/releases/download/develop/flcl-develop.tar.gz", "https://github.com/kokkos/kokkos-fortran-interop/releases/download/0.99.0/flcl-0.99.0.tar.gz", "https://github.com/kokkos/kokkos-fortran-interop/releases/download/0.5.0/flcl-0.5.0.tar.gz", "https://github.com/kokkos/kokkos-fortran-interop/releases/download/0.4.0/flcl-0.4.0.tar.gz", "https://github.com/kokkos/kokkos-fortran-interop/releases/download/0.3/flcl-0.3.tar.gz", "https://github.com/kokkos/kokkos-fortran-interop.git" ], "homepages": [ "https://github.com/kokkos/kokkos-fortran-interop" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "agaspar", "womeld" ], "name": "flcl", "patches": [], "summary": "API for Fortran to C++ and C++ to Fortran multi-dimensional array\ninteroperability using Kokkos.\n", "version": [ { "downloads": [ "https://github.com/kokkos/kokkos-fortran-interop/releases/download/0.3/flcl-0.3.tar.gz" ], "version": "0.3" }, { "downloads": [ "https://github.com/kokkos/kokkos-fortran-interop/releases/download/0.4.0/flcl-0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://github.com/kokkos/kokkos-fortran-interop/releases/download/0.5.0/flcl-0.5.0.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://github.com/kokkos/kokkos-fortran-interop/releases/download/0.99.0/flcl-0.99.0.tar.gz" ], "version": "0.99.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/kokkos/kokkos-fortran-interop.git" } ], "version": "develop" } ] }, "flecsi": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "boost", "c", "caliper", "cmake", "cuda", "cxx", "doxygen", "gmake", "graphviz", "hdf5", "hip", "hpx", "hsa-rocr-dev", "kokkos", "legion", "llvm-amdgpu", "metis", "mpi", "mpich", "ninja", "openmpi", "parmetis", "pdf2svg", "py-recommonmark", "py-sphinx", "py-sphinx-rtd-theme", "texlive" ], "downloads": [ "https://github.com/flecsi/flecsi.git" ], "homepages": [ "https://www.flecsi.org/" ], "licenses": [], "maintainers": [ "opensdh", "rbberger" ], "name": "flecsi", "patches": [], "summary": "FleCSI is a compile-time configurable framework designed to support\nmulti-physics application development. As such, FleCSI attempts to\nprovide a very general set of infrastructure design patterns that can be\nspecialized and extended to suit the needs of a broad variety of solver\nand data requirements. Current support includes multi-dimensional mesh\ntopology, mesh geometry, and mesh adjacency information.\n", "version": [ { "repositories": [ { "commit": "736fc74248777a00dbd41f1a66ae49e615c8a514", "type": "git", "url": "https://github.com/flecsi/flecsi.git" } ], "version": "2.3.2" }, { "repositories": [ { "commit": "598d518b4105ec91ee42ee50420aa46a32a0f60f", "type": "git", "url": "https://github.com/flecsi/flecsi.git" } ], "version": "2.4.0" }, { "repositories": [ { "commit": "f57a634e3f1f136e8932ad81f267d3b69657ae15", "type": "git", "url": "https://github.com/flecsi/flecsi.git" } ], "version": "2.4.1" } ] }, "flecsph": { "alias": [], "categories": [], "dependencies": [ "boost", "cmake", "cxx", "flecsi", "gmake", "googletest", "gsl", "hdf5", "mpi", "ninja", "pkgconfig" ], "downloads": [ "https://github.com/laristra/flecsph.git" ], "homepages": [ "http://flecsi.org" ], "licenses": [], "maintainers": [ "JulienLoiseau" ], "name": "flecsph", "patches": [], "summary": "FleCSPH is a multi-physics compact application that exercises FleCSI\nparallel data structures for tree-based particle methods. In particular,\nFleCSPH implements a smoothed-particle hydrodynamics (SPH) solver for\nthe solution of Lagrangian problems in astrophysics and cosmology.\nFleCSPH includes support for gravitational forces using the fast\nmultipole method (FMM).\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/laristra/flecsph.git" } ], "version": "master" } ] }, "fleur": { "alias": [], "categories": [], "dependencies": [ "blas", "c", "cmake", "cxx", "elpa", "fftw-api", "fortran", "gmake", "hdf5", "intel-oneapi-mkl", "lapack", "libxc", "libxml2", "magma", "mpi", "python", "scalapack", "spfft", "wannier90" ], "downloads": [ "https://iffgit.fz-juelich.de/fleur/fleur.git" ], "homepages": [ "https://www.flapw.de/MaX-5.1" ], "licenses": [ "MIT" ], "maintainers": [], "name": "fleur", "patches": [], "summary": "FLEUR (Full-potential Linearised augmented plane wave in EURope) is a\ncode family for calculating groundstate as well as 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The NVIDIA HPC SDK C, C++, and\nFortran compilers support GPU acceleration of HPC modeling and\nsimulation applications with standard C++ and Fortran, OpenACC\ndirectives, and CUDA. GPU-accelerated math libraries maximize\nperformance on common HPC algorithms, and optimized communications\nlibraries enable standards-based multi-GPU and scalable systems\nprogramming. 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Trilinos\nsolver library. Note that most properties are *transitive* from the\nunderlying Trilinos configuration. For example, MPI is enabled if and\nonly if the linked Trilinos version has it, so this package does not\nprovide an indepdent variant. Instead, use ``fortrilinos ^trilinos~mpi``\nto disable MPI support.\n", "version": [ { "downloads": [ "https://github.com/trilinos/ForTrilinos/releases/download/v2.0.0/ForTrilinos-2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://github.com/trilinos/ForTrilinos/releases/download/v2.0.1/ForTrilinos-2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://github.com/trilinos/ForTrilinos/archive/v2.0.0-dev2.tar.gz" ], "version": "2.0.dev2" }, { "downloads": [ "https://github.com/trilinos/ForTrilinos/archive/v2.0.0-dev3.tar.gz" ], "version": "2.0.dev3" }, { "downloads": [ "https://github.com/trilinos/ForTrilinos/releases/download/v2.1.0/ForTrilinos-2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://github.com/trilinos/ForTrilinos/releases/download/v2.2.0/ForTrilinos-2.2.0.tar.gz" ], "version": "2.2.0" }, { "downloads": [ "https://github.com/trilinos/ForTrilinos/releases/download/v2.3.0/ForTrilinos-2.3.0.tar.gz" ], "version": "2.3.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/trilinos/ForTrilinos.git" } ], "version": "master" } ] }, "fossil": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gnuconfig", "openssl" ], "downloads": [ "https://fossil-scm.org/home/tarball/84f25d7eb10c0714109d69bb2809abfa8b4b5c3d73b151a5b10df724dacd46d8/fossil-src-2.18.tar.gz" ], "homepages": [ "https://fossil-scm.org/" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [ "eschnett" ], "name": "fossil", "patches": [], "summary": "Fossil. Fossil is a simple, high-reliability, distributed software\nconfiguration management system.\n", "version": [ { "downloads": [ "https://fossil-scm.org/home/tarball/84f25d7eb10c0714109d69bb2809abfa8b4b5c3d73b151a5b10df724dacd46d8/fossil-src-2.18.tar.gz" ], "version": "2.18" } ] }, "foundationdb": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "cmake", "cxx", "gmake", "mono", "ninja" ], "downloads": [ "https://github.com/apple/foundationdb/archive/6.3.4.tar.gz", "https://github.com/apple/foundationdb/archive/6.3.3.tar.gz", "https://github.com/apple/foundationdb/archive/6.3.2.tar.gz", "https://github.com/apple/foundationdb/archive/6.3.1.tar.gz", "https://github.com/apple/foundationdb/archive/6.3.0.tar.gz", "https://github.com/apple/foundationdb/archive/6.2.24.tar.gz" ], "homepages": [ "https://www.foundationdb.org/" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "foundationdb", "patches": [], "summary": "FoundationDB is a distributed database designed to handle large volumes\nof structured data across clusters of commodity servers. It organizes\ndata as an ordered key-value store and employs ACID transactions for all\noperations.\n", "version": [ { "downloads": [ "https://github.com/apple/foundationdb/archive/6.2.24.tar.gz" ], "version": "6.2.24" }, { "downloads": [ "https://github.com/apple/foundationdb/archive/6.3.0.tar.gz" ], "version": "6.3.0" }, { "downloads": [ "https://github.com/apple/foundationdb/archive/6.3.1.tar.gz" ], "version": "6.3.1" }, { "downloads": [ "https://github.com/apple/foundationdb/archive/6.3.2.tar.gz" ], "version": "6.3.2" }, { "downloads": [ "https://github.com/apple/foundationdb/archive/6.3.3.tar.gz" ], "version": "6.3.3" }, { "downloads": [ "https://github.com/apple/foundationdb/archive/6.3.4.tar.gz" ], "version": "6.3.4" } ] }, "fox": { "alias": [], "categories": [], "dependencies": [ "bzip2", "cxx", "gl", "glu", "gmake", "gnuconfig", "jpeg", "libpng", "libsm", "libtiff", "libx11", "libxcursor", "libxext", "libxft", "libxi", "libxrandr", "zlib-api" ], "downloads": [ "http://fox-toolkit.org/ftp/fox-1.7.84.tar.gz", "http://fox-toolkit.org/ftp/fox-1.7.67.tar.gz", "http://fox-toolkit.org/ftp/fox-1.6.57.tar.gz" ], "homepages": [ "http://fox-toolkit.org/" ], "licenses": [ "LGPL-3.0-or-later" ], "maintainers": [], "name": "fox", "patches": [ "no_rexdebug.patch when @1.7.67" ], "summary": "FOX is a C++ based Toolkit for developing Graphical User Interfaces\neasily and effectively. It offers a wide, and growing, collection of\nControls, and provides state of the art facilities such as drag and\ndrop, selection, as well as OpenGL widgets for 3D graphical\nmanipulation. FOX also implements icons, images, and user-convenience\nfeatures such as status line help, and tooltips. Tooltips may even be\nused for 3D objects!\n", "version": [ { "downloads": [ "http://fox-toolkit.org/ftp/fox-1.6.57.tar.gz" ], "version": "1.6.57" }, { "downloads": [ "http://fox-toolkit.org/ftp/fox-1.7.67.tar.gz" ], "version": "1.7.67" }, { "downloads": [ "http://fox-toolkit.org/ftp/fox-1.7.84.tar.gz" ], "version": "1.7.84" } ] }, "fp16": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/Maratyszcza/FP16.git" ], "homepages": [ "https://github.com/Maratyszcza/FP16/" ], "licenses": [ "MIT" ], "maintainers": [], "name": "fp16", "patches": [], "summary": "FP16 is a header-only library for conversion to/from half-precision\nfloating point formats\n", "version": [ { "repositories": [ { "commit": "43d6d17df48ebf622587e7ed9472ea76573799b9", "type": "git", "url": "https://github.com/Maratyszcza/FP16.git" } ], "version": "2018-02-25" }, { "repositories": [ { "commit": "34d4bf01bbf7376f2baa71b8fa148b18524d45cf", "type": "git", "url": "https://github.com/Maratyszcza/FP16.git" } ], "version": "2018-10-10" }, { "repositories": [ { "commit": "febbb1c163726b5db24bed55cc9dc42529068997", "type": "git", "url": "https://github.com/Maratyszcza/FP16.git" } ], "version": "2018-11-28" }, { "repositories": [ { "commit": "4dfe081cf6bcd15db339cf2680b9281b8451eeb3", "type": "git", "url": "https://github.com/Maratyszcza/FP16.git" } ], "version": "2020-05-14" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/Maratyszcza/FP16.git" } ], "version": "master" } ] }, "fpart": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "cpio", "gmake", "gnuconfig", "libtool", "rsync", "tar" ], "downloads": [ "https://github.com/martymac/fpart/archive/refs/tags/fpart-master.tar.gz", "https://github.com/martymac/fpart/archive/refs/tags/fpart-1.7.0.tar.gz", "https://github.com/martymac/fpart/archive/refs/tags/fpart-1.6.0.tar.gz", "https://github.com/martymac/fpart/archive/refs/tags/fpart-1.5.1.tar.gz", "https://github.com/martymac/fpart.git" ], "homepages": [ "https://www.fpart.org" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [ "drkrynstrng" ], "name": "fpart", "patches": [], "summary": "Fpart is a filesystem partitioner. It helps you sort file trees and pack\nthem into bags (called \"partitions\"). Fpsync wraps fpart and rsync, tar,\nor cpio to launch several synchronization jobs in parallel.\n", "version": [ { "downloads": [ "https://github.com/martymac/fpart/archive/refs/tags/fpart-1.5.1.tar.gz" ], "version": "1.5.1" }, { "downloads": [ "https://github.com/martymac/fpart/archive/refs/tags/fpart-1.6.0.tar.gz" ], "version": "1.6.0" }, { "downloads": [ "https://github.com/martymac/fpart/archive/refs/tags/fpart-1.7.0.tar.gz" ], "version": "1.7.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/martymac/fpart.git" } ], "version": "master" } ] }, "fpc": { "alias": [], "categories": [], "dependencies": [], "downloads": [ "https://downloads.sourceforge.net/project/freepascal/Linux/3.0.2/fpc-3.0.2.x86_64-linux.tar" ], "homepages": [ "https://www.freepascal.org/" ], "licenses": [ "GPL-2.0-or-later AND LGPL-2.1-or-later" ], "maintainers": [], "name": "fpc", "patches": [], "summary": "Free Pascal is a 32, 64 and 16 bit professional Pascal compiler.\n", "version": [ { "downloads": [ "https://downloads.sourceforge.net/project/freepascal/Linux/3.0.2/fpc-3.0.2.x86_64-linux.tar" ], "version": "3.0.2" } ] }, "fpchecker": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "llvm", "ninja", "python" ], "downloads": [ "https://github.com/LLNL/FPChecker/archive/refs/tags/vmaster.tar.gz", "https://github.com/LLNL/FPChecker/archive/refs/tags/v0.4.0.tar.gz", "https://github.com/LLNL/FPChecker/archive/refs/tags/v0.3.5.tar.gz", "https://github.com/LLNL/FPChecker/archive/refs/tags/v0.3.4.tar.gz", "https://github.com/LLNL/FPChecker.git" ], "homepages": [ "https://fpchecker.org/" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "ilagunap" ], "name": "fpchecker", "patches": [], "summary": "FPChecker (Floating-Point Checker) is a dynamic analysis tool to detect\nfloating-point errors in HPC applications.\n", "version": [ { "downloads": [ "https://github.com/LLNL/FPChecker/archive/refs/tags/v0.3.4.tar.gz" ], "version": "0.3.4" }, { "downloads": [ "https://github.com/LLNL/FPChecker/archive/refs/tags/v0.3.5.tar.gz" ], "version": "0.3.5" }, { "downloads": [ "https://github.com/LLNL/FPChecker/archive/refs/tags/v0.4.0.tar.gz" ], "version": "0.4.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/LLNL/FPChecker.git" } ], "version": "master" } ] }, "fping": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://github.com/schweikert/fping/archive/v5.1.tar.gz", "https://github.com/schweikert/fping/archive/v4.2.tar.gz", "https://github.com/schweikert/fping/archive/v4.1.tar.gz", "https://github.com/schweikert/fping/archive/v4.0.tar.gz" ], "homepages": [ "https://fping.org/" ], "licenses": [ "MIT" ], "maintainers": [], "name": "fping", "patches": [], "summary": "High performance ping tool.\n", "version": [ { "downloads": [ "https://github.com/schweikert/fping/archive/v4.0.tar.gz" ], "version": "4.0" }, { "downloads": [ "https://github.com/schweikert/fping/archive/v4.1.tar.gz" ], "version": "4.1" }, { "downloads": [ "https://github.com/schweikert/fping/archive/v4.2.tar.gz" ], "version": "4.2" }, { "downloads": [ "https://github.com/schweikert/fping/archive/v5.1.tar.gz" ], "version": "5.1" } ] }, "fplll": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gmp", "gnuconfig", "mpfr" ], "downloads": [ "https://github.com/fplll/fplll/releases/download/5.5.0/fplll-5.5.0.tar.gz", "https://github.com/fplll/fplll/releases/download/5.4.4/fplll-5.4.4.tar.gz", "https://github.com/fplll/fplll/releases/download/5.4.1/fplll-5.4.1.tar.gz", "https://github.com/fplll/fplll/releases/download/5.4.0/fplll-5.4.0.tar.gz", "https://github.com/fplll/fplll/releases/download/5.3.3/fplll-5.3.3.tar.gz", "https://github.com/fplll/fplll/releases/download/5.3.2/fplll-5.3.2.tar.gz", "https://github.com/fplll/fplll/releases/download/5.3.1/fplll-5.3.1.tar.gz", "https://github.com/fplll/fplll/releases/download/5.3.0/fplll-5.3.0.tar.gz", "https://github.com/fplll/fplll/releases/download/5.2.1/fplll-5.2.1.tar.gz", "https://github.com/fplll/fplll/releases/download/5.2.0/fplll-5.2.0.tar.gz", "https://github.com/fplll/fplll/releases/download/5.1.0/fplll-5.1.0.tar.gz", "https://github.com/fplll/fplll/releases/download/5.0.3/fplll-5.0.3.tar.gz" ], "homepages": [ "https://github.com/fplll/fplll" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "fplll", "patches": [], "summary": "fplll contains implementations of several lattice algorithms. The\nimplementation relies on floating-point orthogonalization, and LLL is\ncentral to the code, hence the name.\n", "version": [ { "downloads": [ "https://github.com/fplll/fplll/releases/download/5.0.3/fplll-5.0.3.tar.gz" ], "version": "5.0.3" }, { "downloads": [ "https://github.com/fplll/fplll/releases/download/5.1.0/fplll-5.1.0.tar.gz" ], "version": "5.1.0" }, { "downloads": [ "https://github.com/fplll/fplll/releases/download/5.2.0/fplll-5.2.0.tar.gz" ], "version": "5.2.0" }, { "downloads": [ "https://github.com/fplll/fplll/releases/download/5.2.1/fplll-5.2.1.tar.gz" ], "version": "5.2.1" }, { "downloads": [ "https://github.com/fplll/fplll/releases/download/5.3.0/fplll-5.3.0.tar.gz" ], "version": "5.3.0" }, { "downloads": [ "https://github.com/fplll/fplll/releases/download/5.3.1/fplll-5.3.1.tar.gz" ], "version": "5.3.1" }, { "downloads": [ "https://github.com/fplll/fplll/releases/download/5.3.2/fplll-5.3.2.tar.gz" ], "version": "5.3.2" }, { "downloads": [ "https://github.com/fplll/fplll/releases/download/5.3.3/fplll-5.3.3.tar.gz" ], "version": "5.3.3" }, { "downloads": [ "https://github.com/fplll/fplll/releases/download/5.4.0/fplll-5.4.0.tar.gz" ], "version": "5.4.0" }, { "downloads": [ "https://github.com/fplll/fplll/releases/download/5.4.1/fplll-5.4.1.tar.gz" ], "version": "5.4.1" }, { "downloads": [ "https://github.com/fplll/fplll/releases/download/5.4.4/fplll-5.4.4.tar.gz" ], "version": "5.4.4" }, { "downloads": [ "https://github.com/fplll/fplll/releases/download/5.5.0/fplll-5.5.0.tar.gz" ], "version": "5.5.0" } ] }, "fplo": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "fortran", "gmake", "mkl", "ncurses", "perl", "py-numpy", "python", "python-venv", "qt" ], "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/FPLO22.00-62.tar.gz" ], "homepages": [ "https://www.fplo.de/" ], "licenses": [], "maintainers": [], "name": "fplo", "patches": [ "lapackconfig.patch", "MMakefile.patch", "ncurses.patch", "qt-make.patch", "fedit_py.patch" ], "summary": "The FPLO(R) package is a full-potential local-orbital code to solve the\nKohn-Sham equations on a regular lattice or with free boundary\nconditions (finite systems). Relativistic effects are treated either in\na scalar-relativistic or a full 4-component formalism. Available\nfunctionals are LSDA, GGA (PBE 96) and LSDA/GGA+U. Orbital polarization\ncorrection can be applied.\n", "version": [ { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/FPLO22.00-62.tar.gz" ], "version": "22.00-62" } ] }, "fpm": { "alias": [], "categories": [], "dependencies": [ "c", "curl", "fortran", "git" ], "downloads": [ "https://github.com/fortran-lang/fpm/releases/download/v0.10.0/fpm-0.10.0.zip", "https://github.com/fortran-lang/fpm/releases/download/v0.9.0/fpm-0.9.0.zip", "https://github.com/fortran-lang/fpm/releases/download/v0.8.2/fpm-0.8.2.zip", "https://github.com/fortran-lang/fpm/releases/download/v0.8.1/fpm-0.8.1.zip", "https://github.com/fortran-lang/fpm/releases/download/v0.8.0/fpm-0.8.0.zip", "https://github.com/fortran-lang/fpm/releases/download/v0.7.0/fpm-0.7.0.zip", "https://github.com/fortran-lang/fpm/releases/download/v0.6.0/fpm-0.6.0.zip", "https://github.com/fortran-lang/fpm/releases/download/v0.5.0/fpm-0.5.0.zip", "https://github.com/fortran-lang/fpm/releases/download/v0.4.0/fpm-0.4.0.zip", "https://github.com/fortran-lang/fpm/releases/download/v0.3.0/fpm-0.3.0.zip" ], "homepages": [ "https://github.com/fortran-lang/fpm" ], "licenses": [ "MIT" ], "maintainers": [ "awvwgk" ], "name": "fpm", "patches": [], "summary": " Fortran Package Manager (fpm) is a package manager and build system for\nFortran. Its key goal is to improve the user experience of Fortran\nprogrammers. It does so by making it easier to build your Fortran\nprogram or library, run the executables, tests, and examples, and\ndistribute it as a dependency to other Fortran projects.\n", "version": [ { "downloads": [ "https://github.com/fortran-lang/fpm/releases/download/v0.10.0/fpm-0.10.0.zip" ], "version": "0.10.0" }, { "downloads": [ "https://github.com/fortran-lang/fpm/releases/download/v0.3.0/fpm-0.3.0.zip" ], "version": "0.3.0" }, { "downloads": [ "https://github.com/fortran-lang/fpm/releases/download/v0.4.0/fpm-0.4.0.zip" ], "version": "0.4.0" }, { "downloads": [ "https://github.com/fortran-lang/fpm/releases/download/v0.5.0/fpm-0.5.0.zip" ], "version": "0.5.0" }, { "downloads": [ "https://github.com/fortran-lang/fpm/releases/download/v0.6.0/fpm-0.6.0.zip" ], "version": "0.6.0" }, { "downloads": [ "https://github.com/fortran-lang/fpm/releases/download/v0.7.0/fpm-0.7.0.zip" ], "version": "0.7.0" }, { "downloads": [ "https://github.com/fortran-lang/fpm/releases/download/v0.8.0/fpm-0.8.0.zip" ], "version": "0.8.0" }, { "downloads": [ "https://github.com/fortran-lang/fpm/releases/download/v0.8.1/fpm-0.8.1.zip" ], "version": "0.8.1" }, { "downloads": [ "https://github.com/fortran-lang/fpm/releases/download/v0.8.2/fpm-0.8.2.zip" ], "version": "0.8.2" }, { "downloads": [ "https://github.com/fortran-lang/fpm/releases/download/v0.9.0/fpm-0.9.0.zip" ], "version": "0.9.0" } ] }, "fpocket": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "netcdf-c", "netcdf-cxx", "qhull" ], "downloads": [ "https://github.com/Discngine/fpocket/archive/refs/tags/4.2.tar.gz", "https://github.com/Discngine/fpocket/archive/refs/tags/4.1.tar.gz" ], "homepages": [ "https://github.com/Discngine/fpocket" ], "licenses": [ "MIT" ], "maintainers": [], "name": "fpocket", "patches": [], "summary": "The fpocket suite of programs is a very fast open source protein pocket\ndetection algorithm based on Voronoi tessellation.\n", "version": [ { "downloads": [ "https://github.com/Discngine/fpocket/archive/refs/tags/4.1.tar.gz" ], "version": "4.1" }, { "downloads": [ "https://github.com/Discngine/fpocket/archive/refs/tags/4.2.tar.gz" ], "version": "4.2" } ] }, "fpzip": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/LLNL/fpzip/releases/download/master/fpzip-master.tar.gz", "https://github.com/LLNL/fpzip/releases/download/1.3.0/fpzip-1.3.0.tar.gz", "https://github.com/llnl/fpzip" ], "homepages": [ "https://github.com/llnl/fpzip" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "robertu94" ], "name": "fpzip", "patches": [], "summary": "fpzip compressor\n", "version": [ { "downloads": [ "https://github.com/LLNL/fpzip/releases/download/1.3.0/fpzip-1.3.0.tar.gz" ], "version": "1.3.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/llnl/fpzip" } ], "version": "master" } ] }, "fq": { "alias": [], "categories": [], "dependencies": [ "rust" ], "downloads": [ "https://github.com/stjude-rust-labs/fq/archive/refs/tags/v0.10.0.tar.gz" ], "homepages": [ "https://github.com/stjude-rust-labs/fq" ], "licenses": [ "MIT" ], "maintainers": [ "pabloaledo" ], "name": "fq", "patches": [], "summary": "fq is a library to generate and validate FASTQ file pairs. fq provides\nsubcommands for filtering, generating, subsampling, and validating FASTQ\nfiles.\n", "version": [ { "downloads": [ "https://github.com/stjude-rust-labs/fq/archive/refs/tags/v0.10.0.tar.gz" ], "version": "0.10.0" } ] }, "fqtrim": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake" ], "downloads": [ "https://ccb.jhu.edu/software/fqtrim/dl/fqtrim-0.9.7.tar.gz" ], "homepages": [ "https://ccb.jhu.edu/software/fqtrim/" ], "licenses": [ "Artistic-2.0" ], "maintainers": [], "name": "fqtrim", "patches": [], "summary": "fqtrim is a versatile stand-alone utility that can be used to trim\nadapters, poly-A tails, terminal unknown bases (Ns) and low quality 3'\nregions in reads from high-throughput next-generation sequencing\nmachines.\n", "version": [ { "downloads": [ "https://ccb.jhu.edu/software/fqtrim/dl/fqtrim-0.9.7.tar.gz" ], "version": "0.9.7" } ] }, "fr-hit": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "python" ], "downloads": [ "http://weizhong-lab.ucsd.edu/frhit/fr-hit-v0.7.1-2013-02-20.tar.gz" ], "homepages": [ "http://weizhong-lab.ucsd.edu/frhit" ], "licenses": [ "MIT" ], "maintainers": [], "name": "fr-hit", "patches": [ "binning.patch" ], "summary": "An efficient algorithm for fragment recruitment for next generation\nsequences against microbial reference genomes.\n", "version": [ { "downloads": [ "http://weizhong-lab.ucsd.edu/frhit/fr-hit-v0.7.1-2013-02-20.tar.gz" ], "version": "0.7.1-2013-02-20" } ] }, "fraggenescan": { "alias": [], "categories": [], "dependencies": [ "c", "gmake" ], "downloads": [ "https://downloads.sourceforge.net/project/fraggenescan/FragGeneScan1.31.tar.gz", "https://downloads.sourceforge.net/project/fraggenescan/FragGeneScan1.30.tar.gz" ], "homepages": [ "https://sourceforge.net/projects/fraggenescan/" ], "licenses": [], "maintainers": [], "name": "fraggenescan", "patches": [], "summary": "FragGeneScan is an application for finding (fragmented) genes in short\nreads. It can also be applied to predict prokaryotic genes in incomplete\nassemblies or complete genomes.\n", "version": [ { "downloads": [ "https://downloads.sourceforge.net/project/fraggenescan/FragGeneScan1.30.tar.gz" ], "version": "1.30" }, { "downloads": [ "https://downloads.sourceforge.net/project/fraggenescan/FragGeneScan1.31.tar.gz" ], "version": "1.31" } ] }, "freebayes": { "alias": [], "categories": [], "dependencies": [ "bc", "c", "cmake", "cxx", "gmake", "htslib", "meson", "ninja", "parallel", "pkgconfig", "samtools", "vcftools", "xz", "zlib-api" ], "downloads": [ "https://github.com/freebayes/freebayes/releases/download/v1.3.6/freebayes-1.3.6-src.tar.gz", "https://github.com/freebayes/freebayes/releases/download/v1.3.5/freebayes-1.3.5-src.tar.gz", "https://github.com/ekg/freebayes.git" ], "homepages": [ "https://github.com/ekg/freebayes" ], "licenses": [ "MIT" ], "maintainers": [], "name": "freebayes", "patches": [], "summary": "Bayesian haplotype-based genetic polymorphism discovery and genotyping.\n", "version": [ { "downloads": [ "https://github.com/freebayes/freebayes/releases/download/v1.3.5/freebayes-1.3.5-src.tar.gz" ], "version": "1.3.5" }, { "downloads": [ "https://github.com/freebayes/freebayes/releases/download/v1.3.6/freebayes-1.3.6-src.tar.gz" ], "version": "1.3.6" } ] }, "freecad": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "cmake", "coin3d", "cxx", "fortran", "gmake", "gmsh", "med", "netgen", "ninja", "opencascade", "pcl", "py-markdown", "py-matplotlib", "py-pivy", "py-pybind11", "py-pyside2", "py-six", "python", "qt", "swig", "vtk", "xerces-c" ], "downloads": [ "https://github.com/FreeCAD/FreeCAD/archive/refs/tags/0.20.2.tar.gz" ], "homepages": [ "https://www.freecad.org/" ], "licenses": [ "LGPL-2.0-or-later" ], "maintainers": [ "aweits" ], "name": "freecad", "patches": [], "summary": "FreeCAD is an open-source parametric 3D modeler made primarily to design\nreal-life objects of any size. Parametric modeling allows you to easily\nmodify your design by going back into your model history to change its\nparameters.\n", "version": [ { "downloads": [ "https://github.com/FreeCAD/FreeCAD/archive/refs/tags/0.20.2.tar.gz" ], "version": "0.20.2" } ] }, "freefem": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "bison", "c", "cxx", "flex", "fortran", "gmake", "gnuconfig", "libtool", "m4", "mpi", "netlib-lapack", "slepc" ], "downloads": [ "https://github.com/FreeFem/FreeFem-sources/archive/refs/tags/v4.14.tar.gz", "https://github.com/FreeFem/FreeFem-sources/archive/refs/tags/v4.13.tar.gz", "https://github.com/FreeFem/FreeFem-sources/archive/refs/tags/v4.12.tar.gz", "https://github.com/FreeFem/FreeFem-sources/archive/refs/tags/v4.11.tar.gz", "https://github.com/FreeFem/FreeFem-sources/archive/refs/tags/v4.10.tar.gz", "https://github.com/FreeFem/FreeFem-sources/archive/refs/tags/v4.9.tar.gz", "https://github.com/FreeFem/FreeFem-sources/archive/refs/tags/v4.8.tar.gz", "https://github.com/FreeFem/FreeFem-sources/archive/refs/tags/v4.7-1.tar.gz", "https://github.com/FreeFem/FreeFem-sources/archive/refs/tags/v4.7.tar.gz", "https://github.com/FreeFem/FreeFem-sources/archive/refs/tags/v4.6.tar.gz", "https://github.com/FreeFem/FreeFem-sources/archive/refs/tags/v4.5.tar.gz" ], "homepages": [ "https://freefem.org" ], "licenses": [], "maintainers": [ "corentin-dev" ], "name": "freefem", "patches": [ "acmpi.patch when @4.9", "acmpi4.8.patch when @:4.8" ], "summary": "FreeFEM is a popular 2D and 3D partial differential equations (PDE)\nsolver. It allows you to easily implement your own physics modules using\nthe provided FreeFEM language. 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The\ndevelopment of the present version was motivated by recent needs for\nmodeling of surfzone--cale optical properties in a Boussinesq model\nframework, and modeling of Tsunami waves in both a global/coastal scale\nfor prediction of coastal inundation and a basin scale for wave\npropagation.\n", "version": [ { "repositories": [ { "commit": "b569dfe08ab379d7ec375c71304ff95bd6f5ddb6", "type": "git", "url": "https://github.com/fengyanshi/FUNWAVE-TVD" } ], "version": "3.0" }, { "repositories": [ { "commit": "d99502f9288380e0c823f7cc619c6c7c1897f2b9", "type": "git", "url": "https://github.com/fengyanshi/FUNWAVE-TVD" } ], "version": "3.1" }, { "repositories": [ { "commit": "6e57952d1cef1bb6c0930f07387ed41694bd604b", "type": "git", "url": "https://github.com/fengyanshi/FUNWAVE-TVD" } ], "version": "3.2" } ] }, "fuse": { "alias": [ { "alias_for": "macfuse", "name": "fuse" } ], "categories": [], "dependencies": [], "downloads": [ "https://github.com/osxfuse/osxfuse.git" ], "homepages": [ "https://osxfuse.github.io/" ], "licenses": [], "maintainers": [], "name": "macfuse", "patches": [], "summary": "FUSE for macOS allows you to extend macOS via third party file systems.\n", "version": [ { "downloads": [ [] ], "version": "4.1.2" } ] }, "fuse-overlayfs": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "fuse", "gmake", "gnuconfig", "libfuse", "libtool", "m4", "pkgconfig" ], "downloads": [ "https://github.com/containers/fuse-overlayfs/archive/v1.14.tar.gz", "https://github.com/containers/fuse-overlayfs/archive/v1.13.tar.gz", "https://github.com/containers/fuse-overlayfs/archive/v1.10.tar.gz", "https://github.com/containers/fuse-overlayfs/archive/v1.7.1.tar.gz", "https://github.com/containers/fuse-overlayfs/archive/v1.7.tar.gz", "https://github.com/containers/fuse-overlayfs/archive/v1.6.tar.gz", "https://github.com/containers/fuse-overlayfs/archive/v1.5.0.tar.gz", "https://github.com/containers/fuse-overlayfs/archive/v1.4.0.tar.gz", "https://github.com/containers/fuse-overlayfs/archive/v1.3.0.tar.gz", "https://github.com/containers/fuse-overlayfs/archive/v1.2.0.tar.gz", "https://github.com/containers/fuse-overlayfs/archive/v1.1.2.tar.gz", "https://github.com/containers/fuse-overlayfs/archive/v1.1.1.tar.gz", "https://github.com/containers/fuse-overlayfs/archive/v1.1.0.tar.gz" ], "homepages": [ "https://github.com/containers/fuse-overlayfs" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [ "haampie" ], "name": "fuse-overlayfs", "patches": [], "summary": "An implementation of overlay+shiftfs in FUSE for rootless containers.\n", "version": [ { "downloads": [ "https://github.com/containers/fuse-overlayfs/archive/v1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://github.com/containers/fuse-overlayfs/archive/v1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://github.com/containers/fuse-overlayfs/archive/v1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://github.com/containers/fuse-overlayfs/archive/v1.10.tar.gz" ], "version": "1.10" }, { "downloads": [ "https://github.com/containers/fuse-overlayfs/archive/v1.13.tar.gz" ], "version": "1.13" }, { "downloads": [ "https://github.com/containers/fuse-overlayfs/archive/v1.14.tar.gz" ], "version": "1.14" }, { "downloads": [ "https://github.com/containers/fuse-overlayfs/archive/v1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://github.com/containers/fuse-overlayfs/archive/v1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://github.com/containers/fuse-overlayfs/archive/v1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://github.com/containers/fuse-overlayfs/archive/v1.5.0.tar.gz" ], "version": "1.5.0" }, { "downloads": [ "https://github.com/containers/fuse-overlayfs/archive/v1.6.tar.gz" ], "version": "1.6" }, { "downloads": [ "https://github.com/containers/fuse-overlayfs/archive/v1.7.tar.gz" ], "version": "1.7" }, { "downloads": [ "https://github.com/containers/fuse-overlayfs/archive/v1.7.1.tar.gz" ], "version": "1.7.1" } ] }, "fusion-io": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "hdf5", "mpi", "ninja", "python", "python-venv" ], "downloads": [ "https://github.com/nferraro/fusion-io" ], "homepages": [ null ], "licenses": [ "MIT" ], "maintainers": [ "changliu777" ], "name": "fusion-io", "patches": [], "summary": "Fusion-IO is a library providing common interface (C++, C, Fortran,\nPython) to data from various fusion simulation codes. It supported\nreading data from M3D-C1, GPEC, MARS, GATO outputs and GEQDSK files.\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/nferraro/fusion-io" } ], "version": "master" } ] }, "fwq": { "alias": [], "categories": [], "dependencies": [ "gcc", "gmake", "mpi", "py-pandas" ], "downloads": [ "https://github.com/LLNL/system-noise.git" ], "homepages": [ "https://github.com/LLNL/system-noise" ], "licenses": [ "MIT" ], "maintainers": [ "eleon", "nhanford" ], "name": "fwq", "patches": [], "summary": "FWQ is the Fixed Work Quanta benchmark designed to test system noise on\nHPC systems.\n", "version": [ { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/LLNL/system-noise.git" } ], "version": "main" } ] }, "fxdiv": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja", "python" ], "downloads": [ "https://github.com/Maratyszcza/FXdiv.git" ], "homepages": [ "https://github.com/Maratyszcza/FXdiv" ], "licenses": [ "MIT" ], "maintainers": [], "name": "fxdiv", "patches": [], "summary": "Header-only library for division via fixed-point multiplication by\ninverse.\n", "version": [ { "repositories": [ { "commit": "811b482bcd9e8d98ad80c6c78d5302bb830184b0", "type": "git", "url": "https://github.com/Maratyszcza/FXdiv.git" } ], "version": "2018-02-24" }, { "repositories": [ { "commit": "b742d1143724d646cd0f914646f1240eacf5bd73", "type": "git", "url": "https://github.com/Maratyszcza/FXdiv.git" } ], "version": "2018-11-16" }, { "repositories": [ { "commit": "b408327ac2a15ec3e43352421954f5b1967701d1", "type": "git", "url": "https://github.com/Maratyszcza/FXdiv.git" } ], "version": "2020-04-17" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/Maratyszcza/FXdiv.git" } ], "version": "master" } ] }, "fxt": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gawk", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "http://download.savannah.nongnu.org/releases/fkt/fxt-0.3.14.tar.gz", "http://download.savannah.nongnu.org/releases/fkt/fxt-0.3.5.tar.gz", "http://download.savannah.nongnu.org/releases/fkt/fxt-0.3.4.tar.gz", "http://download.savannah.nongnu.org/releases/fkt/fxt-0.3.3.tar.gz" ], "homepages": [ "http://savannah.nongnu.org/projects/fkt" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [ "nfurmento", "sthibaul" ], "name": "fxt", "patches": [], "summary": "Fast User/Kernel Tracing FxT stands for both FKT (Fast Kernel Tracing)\nand FUT (Fast User Tracing). This library provides efficient support for\nrecording traces.\n", "version": [ { "downloads": [ "http://download.savannah.nongnu.org/releases/fkt/fxt-0.3.14.tar.gz" ], "version": "0.3.14" }, { "downloads": [ "http://download.savannah.nongnu.org/releases/fkt/fxt-0.3.3.tar.gz" ], "version": "0.3.3" }, { "downloads": [ "http://download.savannah.nongnu.org/releases/fkt/fxt-0.3.4.tar.gz" ], "version": "0.3.4" }, { "downloads": [ "http://download.savannah.nongnu.org/releases/fkt/fxt-0.3.5.tar.gz" ], "version": "0.3.5" } ] }, "fyba": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "cxx", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://github.com/kartverket/fyba/archive/4.1.1.tar.gz" ], "homepages": [ "https://github.com/kartverket/fyba" ], "licenses": [ "Unlicense" ], "maintainers": [], "name": "fyba", "patches": [ "gcc-6.patch", "vfs-mount-darwin.patch when platform=darwin" ], "summary": "OpenFYBA is the source code release of the FYBA library, distributed by\nthe National Mapping Authority of Norway (Statens kartverk) to read and\nwrite files in the National geodata standard format SOSI.\n", "version": [ { "downloads": [ "https://github.com/kartverket/fyba/archive/4.1.1.tar.gz" ], "version": "4.1.1" } ] }, "fzf": { "alias": [], "categories": [ "detectable" ], "dependencies": [ "go" ], "downloads": [ "https://github.com/junegunn/fzf/archive/master.tar.gz", "https://github.com/junegunn/fzf/archive/0.66.0.tar.gz", "https://github.com/junegunn/fzf/archive/0.65.2.tar.gz", "https://github.com/junegunn/fzf/archive/0.65.1.tar.gz", "https://github.com/junegunn/fzf/archive/0.64.0.tar.gz", "https://github.com/junegunn/fzf/archive/0.62.0.tar.gz", "https://github.com/junegunn/fzf/archive/0.61.0.tar.gz", "https://github.com/junegunn/fzf/archive/0.60.3.tar.gz", "https://github.com/junegunn/fzf/archive/0.60.0.tar.gz", "https://github.com/junegunn/fzf/archive/0.57.0.tar.gz", "https://github.com/junegunn/fzf/archive/0.56.2.tar.gz", "https://github.com/junegunn/fzf/archive/0.55.0.tar.gz", "https://github.com/junegunn/fzf/archive/0.54.3.tar.gz", "https://github.com/junegunn/fzf/archive/0.53.0.tar.gz", "https://github.com/junegunn/fzf/archive/0.52.1.tar.gz", "https://github.com/junegunn/fzf/archive/0.48.1.tar.gz", "https://github.com/junegunn/fzf/archive/0.47.0.tar.gz", "https://github.com/junegunn/fzf/archive/0.46.1.tar.gz", "https://github.com/junegunn/fzf/archive/0.45.0.tar.gz", "https://github.com/junegunn/fzf/archive/0.44.1.tar.gz", "https://github.com/junegunn/fzf/archive/0.42.0.tar.gz", "https://github.com/junegunn/fzf/archive/0.41.1.tar.gz", "https://github.com/junegunn/fzf/archive/0.40.0.tar.gz", "https://github.com/junegunn/fzf.git" ], "homepages": [ "https://github.com/junegunn/fzf" ], "licenses": [ "MIT" ], "maintainers": [ "alecbcs" ], "name": "fzf", "patches": [], "summary": "A general-purpose command-line fuzzy finder that provides fast,\ninteractive filtering for files, processes, git commits, and more. 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The inputs were\ngenerated from GAMESS.\n", "version": [ { "downloads": [ "https://github.com/jkwack/GAMESS_RI-MP2_MiniApp/archive/1.5.tar.gz" ], "version": "1.5" } ] }, "gams": { "alias": [], "categories": [], "dependencies": [], "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/linux_x64_64_sfx.exe" ], "homepages": [ "https://www.gams.com/" ], "licenses": [], "maintainers": [], "name": "gams", "patches": [], "summary": "The General Algebraic Modeling System is a high-level modeling system\nfor mathematical optimization. GAMS is designed for modeling and solving\nlinear, nonlinear, and mixed-integer optimization problems.\n", "version": [ { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/linux_x64_64_sfx.exe" ], "version": "27.2" } ] }, "gapbs": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake" ], "downloads": [ "https://github.com/sbeamer/gapbs/archive/v1.4.tar.gz", "https://github.com/sbeamer/gapbs/archive/v1.0.tar.gz" ], "homepages": [ "http://gap.cs.berkeley.edu/benchmark.html" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "gapbs", "patches": [], "summary": "The GAP Benchmark Suite is intended to help graph processing research by\nstandardizing evaluations. Fewer differences between graph processing\nevaluations will make it easier to compare different research efforts\nand quantify improvements. The benchmark not only specifies graph\nkernels, input graphs, and evaluation methodologies, but it also\nprovides an optimized baseline implementation (this repo). These\nbaseline implementations are representative of state-of-the-art\nperformance, and thus new contributions should outperform them to\ndemonstrate an improvement.\n", "version": [ { "downloads": [ "https://github.com/sbeamer/gapbs/archive/v1.0.tar.gz" ], "version": "1.0" }, { "downloads": [ "https://github.com/sbeamer/gapbs/archive/v1.4.tar.gz" ], "version": "1.4" } ] }, "gapcloser": { "alias": [], "categories": [], "dependencies": [], "downloads": [ "https://downloads.sourceforge.net/project/soapdenovo2/GapCloser/bin/r6/GapCloser-bin-v1.12-r6.tgz" ], "homepages": [ "https://sourceforge.net/projects/soapdenovo2/files/GapCloser/" ], "licenses": [], "maintainers": [], "name": "gapcloser", "patches": [], "summary": "The GapCloser is designed to close the gaps emerging during the\nscaffolding process\n", "version": [ { "downloads": [ "https://downloads.sourceforge.net/project/soapdenovo2/GapCloser/bin/r6/GapCloser-bin-v1.12-r6.tgz" ], "version": "1.12-r6" } ] }, "gapfiller": { "alias": [], "categories": [], "dependencies": [ "perl" ], "downloads": [], "homepages": [ "https://www.baseclear.com/genomics/bioinformatics/basetools/gapfiller" ], "licenses": [], "maintainers": [], "name": "gapfiller", "patches": [], "summary": "GapFiller is a stand-alone program for closing gaps within pre-assembled\nscaffolds. Note: A manual download is required for GapFiller. Spack will\nsearch your current directory for the download file. Alternatively, add\nthis file to a mirror so that Spack can find it. For instructions on how\nto set up a mirror, see\nhttps://spack.readthedocs.io/en/latest/mirrors.html\n", "version": [ { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/39GapFiller_v1-10_linux-x86_64.tar.gz" ], "version": "1.10" } ] }, "garcon": { "alias": [], "categories": [], "dependencies": [ "glib", "gmake", "gnuconfig", "gobject-introspection", "gtkplus", "intltool", "libxfce4ui", "libxfce4util", "xfconf" ], "downloads": [ "https://archive.xfce.org/xfce/4.16/src/garcon-4.18.0.tar.bz2", "https://archive.xfce.org/xfce/4.16/src/garcon-0.8.0.tar.bz2" ], "homepages": [ "https://docs.xfce.org/xfce/garcon/start" ], "licenses": [ "LGPLv2" ], "maintainers": [ "teaguesterling" ], "name": "garcon", "patches": [], "summary": "Menu library for XFCE4\n", "version": [ { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/garcon-0.8.0.tar.bz2" ], "version": "0.8.0" }, { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/garcon-4.18.0.tar.bz2" ], "version": "4.18.0" } ] }, "garfieldpp": { "alias": [], "categories": [ "hep" ], "dependencies": [ "c", "cmake", "cxx", "fortran", "geant4", "gmake", "gsl", "ninja", "root" ], "downloads": [ "https://gitlab.cern.ch/garfield/garfieldpp/-/archive/master/garfieldpp-master.tar.gz", "https://gitlab.cern.ch/garfield/garfieldpp/-/archive/5.0/garfieldpp-5.0.tar.gz", "https://gitlab.cern.ch/garfield/garfieldpp/-/archive/4.0/garfieldpp-4.0.tar.gz", "https://gitlab.cern.ch/garfield/garfieldpp/-/archive/3.0/garfieldpp-3.0.tar.gz", "https://gitlab.cern.ch/garfield/garfieldpp.git" ], "homepages": [ "https://garfieldpp.web.cern.ch/garfieldpp/" ], "licenses": [], "maintainers": [ "mirguest" ], "name": "garfieldpp", "patches": [ "https://gitlab.cern.ch/garfield/garfieldpp/-/commit/882c3023cfa89b45ca7a0c95ab1518454536e8e1.diff when @4.0" ], "summary": "Garfield++ is a toolkit for the detailed simulation of particle\ndetectors based on ionisation measurement in gases and semiconductors.\n", "version": [ { "downloads": [ "https://gitlab.cern.ch/garfield/garfieldpp/-/archive/3.0/garfieldpp-3.0.tar.gz" ], "version": "3.0" }, { "downloads": [ "https://gitlab.cern.ch/garfield/garfieldpp/-/archive/4.0/garfieldpp-4.0.tar.gz" ], "version": "4.0" }, { "downloads": [ "https://gitlab.cern.ch/garfield/garfieldpp/-/archive/5.0/garfieldpp-5.0.tar.gz" ], "version": "5.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://gitlab.cern.ch/garfield/garfieldpp.git" } ], "version": "master" } ] }, "gasnet": { "alias": [], "categories": [ "e4s", "ecp" ], "dependencies": [ "autoconf", "automake", "c", "cuda", "cxx", "gmake", "hip", "hsa-rocr-dev", "libfabric", "llvm-amdgpu", "mpi", "oneapi-level-zero" ], "downloads": [ "https://gasnet.lbl.gov/EX/GASNet-develop.tar.gz", "https://gasnet.lbl.gov/EX/GASNet-main.tar.gz", "https://gasnet.lbl.gov/EX/GASNet-master.tar.gz", "https://gasnet.lbl.gov/EX/GASNet-2025.8.0.tar.gz", "https://gasnet.lbl.gov/EX/GASNet-2025.2.0-snapshot.tar.gz", "https://gasnet.lbl.gov/EX/GASNet-2024.5.0.tar.gz", "https://gasnet.lbl.gov/EX/GASNet-2023.9.0.tar.gz", "https://bitbucket.org/berkeleylab/gasnet.git" ], "homepages": [ "https://gasnet.lbl.gov" ], "licenses": [], "maintainers": [ "PHHargrove", "bonachea" ], "name": "gasnet", "patches": [], "summary": "GASNet is a language-independent, networking middleware layer that\nprovides network-independent, high-performance communication primitives\nincluding Remote Memory Access (RMA) and Active Messages (AM). 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], "version": "6.12.0" }, { "downloads": [ "https://gitlab.cern.ch/GeoModelDev/GeoModel/-/archive/6.13.0/GeoModel-6.13.0.tar.bz2" ], "version": "6.13.0" }, { "downloads": [ "https://gitlab.cern.ch/GeoModelDev/GeoModel/-/archive/6.14.0/GeoModel-6.14.0.tar.bz2" ], "version": "6.14.0" }, { "downloads": [ "https://gitlab.cern.ch/GeoModelDev/GeoModel/-/archive/6.15.0/GeoModel-6.15.0.tar.bz2" ], "version": "6.15.0" }, { "downloads": [ "https://gitlab.cern.ch/GeoModelDev/GeoModel/-/archive/6.16.0/GeoModel-6.16.0.tar.bz2" ], "version": "6.16.0" }, { "downloads": [ "https://gitlab.cern.ch/GeoModelDev/GeoModel/-/archive/6.17.0/GeoModel-6.17.0.tar.bz2" ], "version": "6.17.0" }, { "downloads": [ "https://gitlab.cern.ch/GeoModelDev/GeoModel/-/archive/6.18.0/GeoModel-6.18.0.tar.bz2" ], "version": "6.18.0" }, { "downloads": [ "https://gitlab.cern.ch/GeoModelDev/GeoModel/-/archive/6.19.0/GeoModel-6.19.0.tar.bz2" ], "version": "6.19.0" }, { "downloads": [ 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"geopm-runtime", "patches": [], "summary": "The Global Extensible Open Power Manager (GEOPM) Runtime is designed to\nenhance energy efficiency of applications through active hardware\nconfiguration.\n", "version": [ { "downloads": [ "https://github.com/geopm/geopm/tarball/v3.1.0" ], "version": "3.1.0" }, { "downloads": [ "https://github.com/geopm/geopm/tarball/v3.2.0" ], "version": "3.2.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/geopm/geopm.git" } ], "version": "develop" } ] }, "geopm-service": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "autoconf", "automake", "bash-completion", "c", "cuda", "cxx", "file", "fortran", "gmake", "gnuconfig", "grpc", "libcap", "libtool", "liburing", "oneapi-level-zero", "pkgconfig", "protobuf", "py-setuptools-scm", "systemd", "unzip" ], "downloads": [ "https://github.com/geopm/geopm/tarball/vdevelop", "https://github.com/geopm/geopm/tarball/v3.2.0", "https://github.com/geopm/geopm/tarball/v3.1.0", "https://github.com/geopm/geopm.git" ], "homepages": [ "https://geopm.github.io" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "bgeltz", "cmcantalupo" ], "name": "geopm-service", "patches": [ "nvml-v3.1+.patch when @3.1:+nvml", "libtool.patch when @3.2" ], "summary": "The Global Extensible Open Power Manager (GEOPM) Service provides a user\ninterface for accessing hardware telemetry and settings securely. Note:\nGEOPM interfaces with hardware using Model Specific Registers (MSRs).\nFor proper usage make sure MSRs are made available via the msr or msr-\nsafe kernel modules by your administrator.\n", "version": [ { "downloads": [ "https://github.com/geopm/geopm/tarball/v3.1.0" ], "version": "3.1.0" }, { "downloads": [ "https://github.com/geopm/geopm/tarball/v3.2.0" ], "version": "3.2.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/geopm/geopm.git" } ], "version": "develop" } ] }, "geos": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://download.osgeo.org/geos/geos-3.14.1.tar.bz2", "https://download.osgeo.org/geos/geos-3.14.0.tar.bz2", "https://download.osgeo.org/geos/geos-3.13.1.tar.bz2", "https://download.osgeo.org/geos/geos-3.13.0.tar.bz2", "https://download.osgeo.org/geos/geos-3.12.3.tar.bz2", "https://download.osgeo.org/geos/geos-3.12.2.tar.bz2", "https://download.osgeo.org/geos/geos-3.12.1.tar.bz2", "https://download.osgeo.org/geos/geos-3.12.0.tar.bz2", "https://download.osgeo.org/geos/geos-3.11.5.tar.bz2", "https://download.osgeo.org/geos/geos-3.11.4.tar.bz2", "https://download.osgeo.org/geos/geos-3.11.3.tar.bz2", "https://download.osgeo.org/geos/geos-3.11.2.tar.bz2", "https://download.osgeo.org/geos/geos-3.11.1.tar.bz2", "https://download.osgeo.org/geos/geos-3.11.0.tar.bz2", "https://download.osgeo.org/geos/geos-3.10.7.tar.bz2", "https://download.osgeo.org/geos/geos-3.10.6.tar.bz2", "https://download.osgeo.org/geos/geos-3.10.5.tar.bz2", "https://download.osgeo.org/geos/geos-3.10.4.tar.bz2", "https://download.osgeo.org/geos/geos-3.10.3.tar.bz2", "https://download.osgeo.org/geos/geos-3.10.2.tar.bz2", "https://download.osgeo.org/geos/geos-3.10.1.tar.bz2", "https://download.osgeo.org/geos/geos-3.10.0.tar.bz2", "https://download.osgeo.org/geos/geos-3.9.6.tar.bz2", "https://download.osgeo.org/geos/geos-3.9.5.tar.bz2", "https://download.osgeo.org/geos/geos-3.9.4.tar.bz2", "https://download.osgeo.org/geos/geos-3.9.3.tar.bz2", "https://download.osgeo.org/geos/geos-3.9.2.tar.bz2", "https://download.osgeo.org/geos/geos-3.9.1.tar.bz2", "https://download.osgeo.org/geos/geos-3.9.0.tar.bz2", "https://download.osgeo.org/geos/geos-3.8.4.tar.bz2", "https://download.osgeo.org/geos/geos-3.8.3.tar.bz2", "https://download.osgeo.org/geos/geos-3.8.2.tar.bz2", "https://download.osgeo.org/geos/geos-3.8.1.tar.bz2", "https://download.osgeo.org/geos/geos-3.8.0.tar.bz2", "https://download.osgeo.org/geos/geos-3.7.2.tar.bz2", "https://download.osgeo.org/geos/geos-3.6.2.tar.bz2", "https://download.osgeo.org/geos/geos-3.6.1.tar.bz2", "https://download.osgeo.org/geos/geos-3.6.0.tar.bz2", "https://download.osgeo.org/geos/geos-3.5.1.tar.bz2", "https://download.osgeo.org/geos/geos-3.5.0.tar.bz2", "https://download.osgeo.org/geos/geos-3.4.3.tar.bz2", "https://download.osgeo.org/geos/geos-3.4.2.tar.bz2", "https://download.osgeo.org/geos/geos-3.4.1.tar.bz2", "https://download.osgeo.org/geos/geos-3.4.0.tar.bz2", "https://download.osgeo.org/geos/geos-3.3.9.tar.bz2", "https://download.osgeo.org/geos/geos-3.3.8.tar.bz2", "https://download.osgeo.org/geos/geos-3.3.7.tar.bz2", "https://download.osgeo.org/geos/geos-3.3.6.tar.bz2", "https://download.osgeo.org/geos/geos-3.3.5.tar.bz2", "https://download.osgeo.org/geos/geos-3.3.4.tar.bz2", "https://download.osgeo.org/geos/geos-3.3.3.tar.bz2", "https://github.com/libgeos/geos.git" ], "homepages": [ "https://libgeos.org/" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [ "adamjstewart" ], "name": "geos", "patches": [ "https://github.com/libgeos/geos/commit/cb127eeac823c8b48364c1b437844a5b65ff4748.patch?full_index=1 when @3.8:3.9" ], "summary": "GEOS (Geometry Engine, Open Source). GEOS is a C/C++ library for\ncomputational geometry with a focus on algorithms used in geographic\ninformation systems (GIS) software. It implements the OGC Simple\nFeatures geometry model and provides all the spatial functions in that\nstandard as well as many others. GEOS is a core dependency of PostGIS,\nQGIS, GDAL, and Shapely.\n", "version": [ { "downloads": [ "https://download.osgeo.org/geos/geos-3.10.0.tar.bz2" ], "version": "3.10.0" }, { "downloads": [ "https://download.osgeo.org/geos/geos-3.10.1.tar.bz2" ], "version": "3.10.1" }, { "downloads": [ "https://download.osgeo.org/geos/geos-3.10.2.tar.bz2" ], "version": "3.10.2" }, { "downloads": [ "https://download.osgeo.org/geos/geos-3.10.3.tar.bz2" ], "version": "3.10.3" }, { "downloads": [ "https://download.osgeo.org/geos/geos-3.10.4.tar.bz2" ], "version": "3.10.4" }, { "downloads": [ "https://download.osgeo.org/geos/geos-3.10.5.tar.bz2" ], "version": "3.10.5" }, { "downloads": [ "https://download.osgeo.org/geos/geos-3.10.6.tar.bz2" ], "version": "3.10.6" }, { "downloads": [ "https://download.osgeo.org/geos/geos-3.10.7.tar.bz2" ], "version": "3.10.7" }, { "downloads": [ "https://download.osgeo.org/geos/geos-3.11.0.tar.bz2" ], "version": "3.11.0" }, { "downloads": [ 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It includes built-in support for standard types such\nas string and the ability to define flags in the source file in which\nthey are used. Online documentation available at:\nhttps://gflags.github.io/gflags/\n", "version": [ { "downloads": [ "https://github.com/gflags/gflags/archive/v2.1.2.tar.gz" ], "version": "2.1.2" }, { "downloads": [ "https://github.com/gflags/gflags/archive/v2.2.2.tar.gz" ], "version": "2.2.2" } ] }, "gfsio": { "alias": [], "categories": [], "dependencies": [ "cmake", "fortran", "gmake", "ninja", "pfunit" ], "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-gfsio/archive/refs/tags/vdevelop.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-gfsio/archive/refs/tags/v1.4.2.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-gfsio/archive/refs/tags/v1.4.1.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-gfsio" ], "homepages": [ "https://github.com/NOAA-EMC/NCEPLIBS-gfsio" ], "licenses": [], "maintainers": [ "AlexanderRichert-NOAA", "Hang-Lei-NOAA", "edwardhartnett" ], "name": "gfsio", "patches": [], "summary": "The GFSIO library provides an API to convert GFS Gaussian output into\ngrib output. This is part of the NOAA NCEPLIBS project.\n", "version": [ { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-gfsio/archive/refs/tags/v1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-gfsio/archive/refs/tags/v1.4.2.tar.gz" ], "version": "1.4.2" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/NOAA-EMC/NCEPLIBS-gfsio" } ], "version": "develop" } ] }, "gftl": { "alias": [], "categories": [], "dependencies": [ "cmake", "fortran", "gmake", "m4", "ninja" ], "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/vdevelop.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/vmain.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/v1.16.0.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/v1.15.2.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/v1.15.1.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/v1.14.0.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/v1.13.0.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/v1.12.0.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/v1.11.0.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/v1.10.0.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/v1.9.0.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/v1.8.3.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/v1.8.2.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/v1.8.1.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/v1.8.0.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/v1.7.2.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/v1.7.1.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/v1.7.0.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/v1.6.1.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/v1.6.0.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/v1.5.5.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL/archive/refs/tags/v1.5.4.tar.gz", "https://github.com/Goddard-Fortran-Ecosystem/gFTL.git" ], "homepages": [ "https://github.com/Goddard-Fortran-Ecosystem/gFTL" ], "licenses": [], "maintainers": [ "mathomp4", "tclune" ], "name": "gftl", "patches": [], "summary": "This package generates containers (Vector, Set, Map, ...) with Fortran\ninterfaces. 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Instead of storing the large files\nwithin the Git repository as blobs, Git LFS stores special \"pointer\nfiles\" in the repository, while storing the actual file contents on a\nGit LFS server.\n", "version": [ { "downloads": [ "https://github.com/git-lfs/git-lfs/archive/v3.6.1.tar.gz" ], "version": "3.6.1" }, { "downloads": [ "https://github.com/git-lfs/git-lfs/archive/v3.7.0.tar.gz" ], "version": "3.7.0" } ] }, "gitconddb": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "fmt", "gmake", "googletest", "libgit2", "ninja", "nlohmann-json", "pkgconfig" ], "downloads": [ "https://gitlab.cern.ch/lhcb/GitCondDB/-/archive/master/GitCondDB-master.tar.gz", "https://gitlab.cern.ch/lhcb/GitCondDB/-/archive/0.2.0/GitCondDB-0.2.0.tar.gz", "https://gitlab.cern.ch/lhcb/GitCondDB/-/archive/0.1.3/GitCondDB-0.1.3.tar.gz", "https://gitlab.cern.ch/lhcb/GitCondDB/-/archive/0.1.2/GitCondDB-0.1.2.tar.gz", "https://gitlab.cern.ch/lhcb/GitCondDB/-/archive/0.1.1/GitCondDB-0.1.1.tar.gz", "https://gitlab.cern.ch/lhcb/GitCondDB.git" ], "homepages": [ "https://gitlab.cern.ch/lhcb/GitCondDB" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "drbenmorgan" ], "name": "gitconddb", "patches": [], "summary": "Conditions Database library using a Git repository as the storage\nbackend\n", "version": [ { "downloads": [ "https://gitlab.cern.ch/lhcb/GitCondDB/-/archive/0.1.1/GitCondDB-0.1.1.tar.gz" ], "version": "0.1.1" }, { "downloads": [ "https://gitlab.cern.ch/lhcb/GitCondDB/-/archive/0.1.2/GitCondDB-0.1.2.tar.gz" ], "version": "0.1.2" }, { "downloads": [ "https://gitlab.cern.ch/lhcb/GitCondDB/-/archive/0.1.3/GitCondDB-0.1.3.tar.gz" ], "version": "0.1.3" }, { "downloads": [ "https://gitlab.cern.ch/lhcb/GitCondDB/-/archive/0.2.0/GitCondDB-0.2.0.tar.gz" ], "version": "0.2.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://gitlab.cern.ch/lhcb/GitCondDB.git" } ], "version": "master" } ] }, "givaro": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "cxx", "gmake", "gmp", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://github.com/linbox-team/givaro/releases/download/v4.2.1/givaro-4.2.1.tar.gz" ], "homepages": [ "https://casys.gricad-pages.univ-grenoble-alpes.fr/givaro/" ], "licenses": [ "CECILL-B" ], "maintainers": [ "d-torrance" ], "name": "givaro", "patches": [], "summary": "Givaro is a C++ library focused on arithmetic and algebraic\ncomputations. 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Givaro is\nwidely used as a building block in computer algebra systems and research\nsoftware for number theory, algebra, and cryptography.\n", "version": [ { "downloads": [ "https://github.com/linbox-team/givaro/releases/download/v4.2.1/givaro-4.2.1.tar.gz" ], "version": "4.2.1" } ] }, "gl": { "alias": [ { "alias_for": "wgl", "name": "gl" } ], "categories": [ "windows", "windows-system", "detectable" ], "dependencies": [ "win-sdk" ], "downloads": [], "homepages": [ "https://learn.microsoft.com/en-us/windows/win32/opengl/wgl-and-windows-reference" ], "licenses": [], "maintainers": [], "name": "wgl", "patches": [], "summary": "External WGl and Windows OpenGL emulation representation in Spack\n", "version": [ { "downloads": [ [] ], "version": "10.0.10586" }, { "downloads": [ [] ], "version": "10.0.14393" }, { "downloads": [ [] ], "version": "10.0.15063" }, { "downloads": [ [] ], "version": "10.0.16299" }, { "downloads": [ [] ], "version": "10.0.17134" }, { "downloads": [ [] ], "version": 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is a system for finding genes in microbial DNA, especially the\ngenomes of bacteria, archaea, and viruses.\n", "version": [ { "downloads": [ "https://ccb.jhu.edu/software/glimmer/glimmer302b.tar.gz" ], "version": "3.02b" } ] }, "glm": { "alias": [], "categories": [ "windows" ], "dependencies": [ "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/g-truc/glm/archive/develop.tar.gz", "https://github.com/g-truc/glm/archive/1.0.1.tar.gz", "https://github.com/g-truc/glm/archive/0.9.9.8.tar.gz", "https://github.com/g-truc/glm/archive/0.9.9.3.tar.gz", "https://github.com/g-truc/glm/archive/0.9.7.1.tar.gz", "https://github.com/g-truc/glm.git" ], "homepages": [ "https://github.com/g-truc/glm" ], "licenses": [ "MIT" ], "maintainers": [], "name": "glm", "patches": [], "summary": "OpenGL Mathematics (GLM) is a header only C++ mathematics library for\ngraphics software based on the OpenGL Shading Language (GLSL)\nspecification\n", "version": [ { "downloads": [ "https://github.com/g-truc/glm/archive/0.9.7.1.tar.gz" ], "version": "0.9.7.1" }, { "downloads": [ "https://github.com/g-truc/glm/archive/0.9.9.3.tar.gz" ], "version": "0.9.9.3" }, { "downloads": [ "https://github.com/g-truc/glm/archive/0.9.9.8.tar.gz" ], "version": "0.9.9.8" }, { "downloads": [ "https://github.com/g-truc/glm/archive/1.0.1.tar.gz" ], "version": "1.0.1" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/g-truc/glm.git" } ], "version": "develop" } ] }, "global": { "alias": [], "categories": [], "dependencies": [ "exuberant-ctags", "gmake", "ncurses" ], "downloads": [ "https://ftp.gnu.org/pub/gnu/global/global-6.6.14.tar.gz", "https://ftp.gnu.org/pub/gnu/global/global-6.6.7.tar.gz", "https://ftp.gnu.org/pub/gnu/global/global-6.6.6.tar.gz", "https://ftp.gnu.org/pub/gnu/global/global-6.6.4.tar.gz", "https://ftp.gnu.org/pub/gnu/global/global-6.5.tar.gz" ], "homepages": [ "https://www.gnu.org/software/global" ], "licenses": [ "LGPL-3.0-only" ], "maintainers": [ "gaber" ], "name": "global", "patches": [ "global-ncurse.patch" ], "summary": "The Gnu Global tagging system\n", "version": [ { "downloads": [ "https://ftp.gnu.org/pub/gnu/global/global-6.5.tar.gz" ], "version": "6.5" }, { "downloads": [ "https://ftp.gnu.org/pub/gnu/global/global-6.6.14.tar.gz" ], "version": "6.6.14" }, { "downloads": [ "https://ftp.gnu.org/pub/gnu/global/global-6.6.4.tar.gz" ], "version": "6.6.4" }, { "downloads": [ "https://ftp.gnu.org/pub/gnu/global/global-6.6.6.tar.gz" ], "version": "6.6.6" }, { "downloads": [ "https://ftp.gnu.org/pub/gnu/global/global-6.6.7.tar.gz" ], "version": "6.6.7" } ] }, "globalarrays": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "blas", "c", "cxx", "fortran", "gmake", "gnuconfig", "lapack", "libfabric", "mpi", "rdma-core", "scalapack" ], "downloads": [ "https://github.com/GlobalArrays/ga/releases/download/v5.8.2/ga-5.8.2.tar.gz", "https://github.com/GlobalArrays/ga/releases/download/v5.8/ga-5.8.tar.gz", "https://github.com/GlobalArrays/ga/releases/download/v5.7.2/ga-5.7.2.tar.gz", "https://github.com/GlobalArrays/ga/releases/download/v5.7.1/ga-5.7.1.tar.gz", "https://github.com/GlobalArrays/ga/releases/download/v5.7/ga-5.7.tar.gz", "https://github.com/GlobalArrays/ga/releases/download/v5.6.5/ga-5.6.5.tar.gz", "https://github.com/GlobalArrays/ga/releases/download/v5.6.4/ga-5.6.4.tar.gz", "https://github.com/GlobalArrays/ga/releases/download/v5.6.3/ga-5.6.3.tar.gz", "https://github.com/GlobalArrays/ga/releases/download/v5.6.2/ga-5.6.2.tar.gz", "https://github.com/GlobalArrays/ga/releases/download/v5.6.1/ga-5.6.1.tar.gz", "https://github.com/GlobalArrays/ga/releases/download/v5.6/ga-5.6.tar.gz" ], "homepages": [ "https://hpc.pnl.gov/globalarrays/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "globalarrays", "patches": [], "summary": "Global Arrays (GA) is a Partitioned Global Address Space (PGAS)\nprogramming model. It provides primitives for one-sided communication\n(Get, Put, Accumulate) and Atomic Operations (read increment). It\nsupports blocking and non-blocking primtives, and supports location\nconsistency.\n", "version": [ { "downloads": [ "https://github.com/GlobalArrays/ga/releases/download/v5.6/ga-5.6.tar.gz" ], "version": "5.6" }, { "downloads": [ "https://github.com/GlobalArrays/ga/releases/download/v5.6.1/ga-5.6.1.tar.gz" ], "version": "5.6.1" }, { "downloads": [ "https://github.com/GlobalArrays/ga/releases/download/v5.6.2/ga-5.6.2.tar.gz" ], "version": "5.6.2" }, { "downloads": [ "https://github.com/GlobalArrays/ga/releases/download/v5.6.3/ga-5.6.3.tar.gz" ], "version": "5.6.3" }, { "downloads": [ "https://github.com/GlobalArrays/ga/releases/download/v5.6.4/ga-5.6.4.tar.gz" ], "version": "5.6.4" }, { "downloads": [ "https://github.com/GlobalArrays/ga/releases/download/v5.6.5/ga-5.6.5.tar.gz" ], "version": "5.6.5" }, { "downloads": [ "https://github.com/GlobalArrays/ga/releases/download/v5.7/ga-5.7.tar.gz" ], "version": "5.7" }, { "downloads": [ "https://github.com/GlobalArrays/ga/releases/download/v5.7.1/ga-5.7.1.tar.gz" ], "version": "5.7.1" }, { "downloads": [ "https://github.com/GlobalArrays/ga/releases/download/v5.7.2/ga-5.7.2.tar.gz" ], "version": "5.7.2" }, { "downloads": [ "https://github.com/GlobalArrays/ga/releases/download/v5.8/ga-5.8.tar.gz" ], "version": "5.8" }, { "downloads": [ "https://github.com/GlobalArrays/ga/releases/download/v5.8.2/ga-5.8.2.tar.gz" ], "version": "5.8.2" } ] }, "globus-callout": { "alias": [], "categories": [], "dependencies": [ "c", "globus-common", "gmake", "gnuconfig" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_callout-4.3.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/tree/master/callout/source" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "globus-callout", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nGlobus Callout Library - provides a platform independent way of dealing\nwith runtime loadable functions.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_callout-4.3.tar.gz" ], "version": "4.3" } ] }, "globus-common": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_common-18.14.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/tree/master/common/source" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "globus-common", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nCommon Library Programs.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_common-18.14.tar.gz" ], "version": "18.14" } ] }, "globus-ftp-client": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "globus-common", "globus-ftp-control", "globus-gsi-callback", "globus-gsi-credential", "globus-gsi-sysconfig", "globus-gssapi-gsi", "globus-xio", "globus-xio-popen-driver", "gmake", "gnuconfig", "libtool", "m4", "openssl" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_ftp_client-9.8.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/tree/master/gridftp/client/source" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "globus-ftp-client", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nGridFTP Client Library.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_ftp_client-9.8.tar.gz" ], "version": "9.8" } ] }, "globus-ftp-control": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "globus-common", "globus-gss-assist", "globus-gssapi-error", "globus-gssapi-gsi", "globus-io", "globus-xio", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_ftp_control-9.10.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/tree/master/gridftp/control/source" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "globus-ftp-control", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nGridFTP Control Library.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_ftp_control-9.10.tar.gz" ], "version": "9.10" } ] }, "globus-gass-copy": { "alias": [], "categories": [], "dependencies": [ "c", "globus-common", "globus-ftp-client", "globus-ftp-control", "globus-gass-transfer", "globus-gsi-sysconfig", "globus-gssapi-error", "globus-gssapi-gsi", "globus-io", "gmake", "gnuconfig" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gass_copy-10.13.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/tree/master/gass/copy/source" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "globus-gass-copy", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nGlobus Gass Copy Programs.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gass_copy-10.13.tar.gz" ], "version": "10.13" } ] }, "globus-gass-transfer": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "globus-common", "globus-gss-assist", "globus-gssapi-gsi", "globus-io", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gass_transfer-9.4.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/blob/master/gass/transfer/source" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "globus-gass-transfer", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nGlobus Gass Transfer.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gass_transfer-9.4.tar.gz" ], "version": "9.4" } ] }, "globus-gsi-callback": { "alias": [], "categories": [], "dependencies": [ "c", "globus-common", "globus-gsi-cert-utils", "globus-gsi-openssl-error", "globus-gsi-sysconfig", "globus-openssl-module", "gmake", "gnuconfig" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gsi_callback-6.2.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/tree/master/gsi/callback/source" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "globus-gsi-callback", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nGlobus GSI Callback Library.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gsi_callback-6.2.tar.gz" ], "version": "6.2" } ] }, "globus-gsi-cert-utils": { "alias": [], "categories": [], "dependencies": [ "c", "globus-common", "globus-gsi-openssl-error", "globus-openssl-module", "gmake", "gnuconfig", "openssl" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gsi_cert_utils-10.11.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/blob/master/gsi/cert_utils/source" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "globus-gsi-cert-utils", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nGlobus GSI Cert Utils Library Programs.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gsi_cert_utils-10.11.tar.gz" ], "version": "10.11" } ] }, "globus-gsi-credential": { "alias": [], "categories": [], "dependencies": [ "c", "globus-common", "globus-gsi-callback", "globus-gsi-cert-utils", "globus-gsi-openssl-error", "globus-gsi-sysconfig", "gmake", "gnuconfig" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gsi_credential-8.4.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/tree/master/gsi/credential/source" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "globus-gsi-credential", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nGlobus GSI Credential Library.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gsi_credential-8.4.tar.gz" ], "version": "8.4" } ] }, "globus-gsi-openssl-error": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "globus-common", "gmake", "gnuconfig", "libtool", "m4", "openssl" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gsi_openssl_error-4.4.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/blob/master/gsi/openssl_error/source" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "globus-gsi-openssl-error", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nGlobus OpenSSL Error Handling.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gsi_openssl_error-4.4.tar.gz" ], "version": "4.4" } ] }, "globus-gsi-proxy-core": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "globus-common", "globus-gsi-cert-utils", "globus-gsi-credential", "globus-gsi-openssl-error", "globus-gsi-proxy-ssl", "globus-gsi-sysconfig", "globus-openssl-module", "gmake", "gnuconfig", "libtool", "m4", "openssl" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gsi_proxy_core-9.8.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/blob/master/gsi/proxy/proxy_core/source" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "globus-gsi-proxy-core", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nGlobus GSI Proxy Core Library.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gsi_proxy_core-9.8.tar.gz" ], "version": "9.8" } ] }, "globus-gsi-proxy-ssl": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "openssl" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gsi_proxy_ssl-6.5.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/tree/master/gsi/proxy/proxy_ssl/source" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "globus-gsi-proxy-ssl", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nGlobus GSI Proxy SSL Library.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gsi_proxy_ssl-6.5.tar.gz" ], "version": "6.5" } ] }, "globus-gsi-sysconfig": { "alias": [], "categories": [], "dependencies": [ "c", "globus-common", "globus-gsi-openssl-error", "globus-openssl-module", "gmake", "gnuconfig" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gsi_sysconfig-9.6.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/blob/master/gsi/sysconfig/source" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "globus-gsi-sysconfig", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nGlobus GSI System Config Library.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gsi_sysconfig-9.6.tar.gz" ], "version": "9.6" } ] }, "globus-gss-assist": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "globus-callout", "globus-common", "globus-gsi-cert-utils", "globus-gsi-credential", "globus-gsi-sysconfig", "globus-gssapi-gsi", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gss_assist-12.7.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/blob/master/gsi/gss_assist/source" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "globus-gss-assist", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nGSSAPI Assist library Programs.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gss_assist-12.7.tar.gz" ], "version": "12.7" } ] }, "globus-gssapi-error": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "globus-common", "globus-gss-assist", "globus-gssapi-gsi", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gssapi_error-6.3.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/blob/master/gsi/gssapi_error/source" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "globus-gssapi-error", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nGSSAPI Error Library.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gssapi_error-6.3.tar.gz" ], "version": "6.3" } ] }, "globus-gssapi-gsi": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "awk", "c", "globus-common", "globus-gsi-callback", "globus-gsi-cert-utils", "globus-gsi-credential", "globus-gsi-openssl-error", "globus-gsi-proxy-core", "globus-gsi-sysconfig", "globus-openssl-module", "gmake", "gnuconfig", "libtool", "m4", "openssl" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gssapi_gsi-14.20.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/tree/master/gsi/gssapi/source" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "globus-gssapi-gsi", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nGSSAPI library.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_gssapi_gsi-14.20.tar.gz" ], "version": "14.20" } ] }, "globus-io": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "globus-common", "globus-gss-assist", "globus-gssapi-error", "globus-gssapi-gsi", "globus-xio", "globus-xio-gsi-driver", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_io-12.4.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/tree/master/io/compat" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "globus-io", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nuniform I/O interface to stream and datagram style communications.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_io-12.4.tar.gz" ], "version": "12.4" } ] }, "globus-openssl-module": { "alias": [], "categories": [], "dependencies": [ "c", "globus-common", "globus-gsi-openssl-error", "globus-gsi-proxy-ssl", "gmake", "gnuconfig" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_openssl_module-5.2.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/blob/master/gsi/openssl_module" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "globus-openssl-module", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nGlobus OpenSSL Module Wrapper.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_openssl_module-5.2.tar.gz" ], "version": "5.2" } ] }, "globus-xio": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "globus-common", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_xio-6.6.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/blob/master/xio/src" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "globus-xio", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nGlobus XIO Framework.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_xio-6.6.tar.gz" ], "version": "6.6" } ] }, "globus-xio-gsi-driver": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "globus-common", "globus-gss-assist", "globus-gssapi-error", "globus-gssapi-gsi", "globus-xio", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_xio_gsi_driver-5.4.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/blob/master/xio/drivers/gsi" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "globus-xio-gsi-driver", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nGlobus XIO GSI Driver.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_xio_gsi_driver-5.4.tar.gz" ], "version": "5.4" } ] }, "globus-xio-pipe-driver": { "alias": [], "categories": [], "dependencies": [ "c", "globus-common", "globus-xio", "gmake", "gnuconfig" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_xio_pipe_driver-4.1.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/blob/master/xio/drivers/pipe/source" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "globus-xio-pipe-driver", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nGlobus Pipe Driver.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_xio_pipe_driver-4.1.tar.gz" ], "version": "4.1" } ] }, "globus-xio-popen-driver": { "alias": [], "categories": [], "dependencies": [ "c", "globus-common", "globus-xio", "gmake", "gnuconfig" ], "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_xio_popen_driver-4.1.tar.gz" ], "homepages": [ "https://github.com/gridcf/gct/blob/master/xio/drivers/popen/source" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "github_user1", "github_user2" ], "name": "globus-xio-popen-driver", "patches": [], "summary": "The Grid Community Toolkit (GCT) is an open source software toolkit used\nfor building grid systems and applications. It is a fork of the Globus\nToolkit originally created by the Globus Alliance. It is supported by\nthe Grid Community Forum (GridCF) that provides community-based support\nfor core software packages in grid computing. This package contains the\nGlobus XIO Pipe Open Driver, which allows a user to execute a program\nand treat it as a transport driver by routing data through pipes.\n", "version": [ { "downloads": [ "https://repo.gridcf.org/gct6/sources/globus_xio_popen_driver-4.1.tar.gz" ], "version": "4.1" } ] }, "glog": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "gflags", "gmake", "ninja" ], "downloads": [ "https://github.com/google/glog/archive/v0.7.1.tar.gz", "https://github.com/google/glog/archive/v0.7.0.tar.gz", "https://github.com/google/glog/archive/v0.6.0.tar.gz", "https://github.com/google/glog/archive/v0.4.0.tar.gz", "https://github.com/google/glog/archive/v0.3.5.tar.gz" ], "homepages": [ "https://github.com/google/glog" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "glog", "patches": [], "summary": "C++ implementation of the Google logging module.\n", "version": [ { "downloads": [ "https://github.com/google/glog/archive/v0.3.5.tar.gz" ], "version": "0.3.5" }, { "downloads": [ "https://github.com/google/glog/archive/v0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://github.com/google/glog/archive/v0.6.0.tar.gz" ], "version": "0.6.0" }, { "downloads": [ "https://github.com/google/glog/archive/v0.7.0.tar.gz" ], "version": "0.7.0" }, { "downloads": [ "https://github.com/google/glog/archive/v0.7.1.tar.gz" ], "version": "0.7.1" } ] }, "gloo": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cuda", "cxx", "gmake", "libuv", "ninja", "pkgconfig" ], "downloads": [ "https://github.com/facebookincubator/gloo.git" ], "homepages": [ "https://github.com/facebookincubator/gloo" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "gloo", "patches": [ "https://github.com/facebookincubator/gloo/commit/10909297fedab0a680799211a299203e53515032.patch?full_index=1 when @:2023-1-16", "https://github.com/facebookincubator/gloo/commit/4a5e339b764261d20fc409071dc7a8b8989aa195.patch?full_index=1 when @2021-05-21:2022-5-18" ], "summary": "Gloo is a collective communications library.\n", "version": [ { "repositories": [ { "commit": "aad0002fb40612e991390d8e807f247ed23f13c5", "type": "git", "url": "https://github.com/facebookincubator/gloo.git" } ], "version": "2018-04-06" }, { "repositories": [ { "commit": "69eef748cc1dfbe0fefed69b34e6545495f67ac5", "type": "git", "url": "https://github.com/facebookincubator/gloo.git" } ], "version": "2018-05-29" }, { "repositories": [ { "commit": "cdeb59d5c82e5401445b4c051bb396f6738d4a19", "type": "git", "url": "https://github.com/facebookincubator/gloo.git" } ], "version": "2018-11-20" }, { "repositories": [ { "commit": "670b4d4aa46886cc66874e2a4dc846f5cfc2a285", "type": "git", "url": "https://github.com/facebookincubator/gloo.git" } ], "version": "2019-02-01" }, { "repositories": [ { "commit": "46ae6ec2191a3cc297ab33d4edd43accc35df992", "type": "git", "url": "https://github.com/facebookincubator/gloo.git" } ], "version": "2019-06-19" }, { "repositories": [ { "commit": "ca528e32fea9ca8f2b16053cff17160290fc84ce", "type": "git", "url": "https://github.com/facebookincubator/gloo.git" } ], "version": "2019-09-29" }, { "repositories": [ { "commit": "7c541247a6fa49e5938e304ab93b6da661823d0f", "type": "git", "url": "https://github.com/facebookincubator/gloo.git" } ], "version": "2019-11-05" }, { "repositories": [ { "commit": "113bde13035594cafdca247be953610b53026553", "type": "git", "url": "https://github.com/facebookincubator/gloo.git" } ], "version": "2020-03-17" }, { "repositories": [ { "commit": "3dc0328fe6a9d47bd47c0c6ca145a0d8a21845c6", "type": "git", "url": "https://github.com/facebookincubator/gloo.git" } ], "version": "2020-09-18" }, { "repositories": [ { "commit": "6f7095f6e9860ce4fd682a7894042e6eba0996f1", "type": "git", "url": "https://github.com/facebookincubator/gloo.git" } ], "version": "2021-05-04" }, { "repositories": [ { "commit": "c22a5cfba94edf8ea4f53a174d38aa0c629d070f", "type": "git", "url": "https://github.com/facebookincubator/gloo.git" } ], "version": "2021-05-21" }, { "repositories": [ { "commit": "5b143513263133af2b95547e97c07cebeb72bf72", "type": "git", "url": "https://github.com/facebookincubator/gloo.git" } ], "version": "2022-05-18" }, { "repositories": [ { "commit": "10909297fedab0a680799211a299203e53515032", "type": "git", "url": "https://github.com/facebookincubator/gloo.git" } ], "version": "2023-01-17" }, { "repositories": [ { "commit": "597accfd79f5b0f9d57b228dec088ca996686475", "type": "git", "url": "https://github.com/facebookincubator/gloo.git" } ], "version": "2023-05-19" }, { "repositories": [ { "commit": "5354032ea08eadd7fc4456477f7f7c6308818509", "type": "git", "url": "https://github.com/facebookincubator/gloo.git" } ], "version": "2023-12-03" }, { "repositories": [ { "commit": "c7b7b022c124d9643957d9bd55f57ac59fce8fa2", "type": "git", "url": "https://github.com/facebookincubator/gloo.git" } ], "version": "2025-06-04" }, { "repositories": [ { "commit": "54cbae0d3a67fa890b4c3d9ee162b7860315e341", "type": "git", "url": "https://github.com/facebookincubator/gloo.git" } ], "version": "2025-08-21" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/facebookincubator/gloo.git" } ], "version": "master" } ] }, "glow": { "alias": [], "categories": [], "dependencies": [ "go" ], "downloads": [ "https://github.com/charmbracelet/glow/archive/refs/tags/v1.5.1.tar.gz", "https://github.com/charmbracelet/glow/archive/refs/tags/v1.5.0.tar.gz", "https://github.com/charmbracelet/glow/archive/refs/tags/v1.4.1.tar.gz", "https://github.com/charmbracelet/glow/archive/refs/tags/v1.4.0.tar.gz", "https://github.com/charmbracelet/glow/archive/refs/tags/v1.3.0.tar.gz", "https://github.com/charmbracelet/glow/archive/refs/tags/v1.2.1.tar.gz", "https://github.com/charmbracelet/glow/archive/refs/tags/v1.2.0.tar.gz", "https://github.com/charmbracelet/glow/archive/refs/tags/v1.1.0.tar.gz", "https://github.com/charmbracelet/glow/archive/refs/tags/v1.0.2.tar.gz", "https://github.com/charmbracelet/glow/archive/refs/tags/v1.0.1.tar.gz" ], "homepages": [ "https://github.com/charmbracelet/glow" ], "licenses": [ "MIT" ], "maintainers": [], "name": "glow", "patches": [], "summary": " Glow is a terminal based markdown reader designed from the ground up to\nbring out the beauty\u2014and power\u2014of the CLI. Use it to discover markdown\nfiles, read documentation directly on the command line and stash\nmarkdown files to your own private collection, so you can read them\nanywhere. Glow will find local markdown files in subdirectories or a\nlocal Git repository.\n", "version": [ { "downloads": [ "https://github.com/charmbracelet/glow/archive/refs/tags/v1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://github.com/charmbracelet/glow/archive/refs/tags/v1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://github.com/charmbracelet/glow/archive/refs/tags/v1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://github.com/charmbracelet/glow/archive/refs/tags/v1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://github.com/charmbracelet/glow/archive/refs/tags/v1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://github.com/charmbracelet/glow/archive/refs/tags/v1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://github.com/charmbracelet/glow/archive/refs/tags/v1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://github.com/charmbracelet/glow/archive/refs/tags/v1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://github.com/charmbracelet/glow/archive/refs/tags/v1.5.0.tar.gz" ], "version": "1.5.0" }, { "downloads": [ "https://github.com/charmbracelet/glow/archive/refs/tags/v1.5.1.tar.gz" ], "version": "1.5.1" } ] }, "glpk": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "gmp", "gnuconfig" ], "downloads": [ "https://ftpmirror.gnu.org/glpk/glpk-5.0.tar.gz", "https://ftpmirror.gnu.org/glpk/glpk-4.65.tar.gz", "https://ftpmirror.gnu.org/glpk/glpk-4.61.tar.gz", "https://ftpmirror.gnu.org/glpk/glpk-4.57.tar.gz" ], "homepages": [ "https://www.gnu.org/software/glpk" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "glpk", "patches": [], "summary": "The GLPK (GNU Linear Programming Kit) package is intended for solving\nlarge-scale linear programming (LP), mixed integer programming (MIP),\nand other related problems. It is a set of routines written in ANSI C\nand organized in the form of a callable library.\n", "version": [ { "downloads": [ "https://ftpmirror.gnu.org/glpk/glpk-4.57.tar.gz" ], "version": "4.57" }, { "downloads": [ "https://ftpmirror.gnu.org/glpk/glpk-4.61.tar.gz" ], "version": "4.61" }, { "downloads": [ "https://ftpmirror.gnu.org/glpk/glpk-4.65.tar.gz" ], "version": "4.65" }, { "downloads": [ "https://ftpmirror.gnu.org/glpk/glpk-5.0.tar.gz" ], "version": "5.0" } ] }, "glproto": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/proto/glproto-1.4.17.tar.gz" ], "homepages": [ "https://www.x.org/wiki/" ], "licenses": [ "SGI-B-1.1" ], "maintainers": [], "name": "glproto", "patches": [], "summary": "OpenGL Extension to the X Window System. This extension defines a\nprotocol for the client to send 3D rendering commands to the X server.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/proto/glproto-1.4.17.tar.gz" ], "version": "1.4.17" } ] }, "glu": { "alias": [ { "alias_for": "mesa-glu", "name": "glu" } ], "categories": [], "dependencies": [ "c", "cxx", "gl", "gmake", "gnuconfig" ], "downloads": [ "https://archive.mesa3d.org/glu/glu-9.0.2.tar.gz", "https://archive.mesa3d.org/glu/glu-9.0.1.tar.gz", "https://archive.mesa3d.org/glu/glu-9.0.0.tar.gz" ], "homepages": [ "https://www.mesa3d.org" ], "licenses": [], "maintainers": [], "name": "mesa-glu", "patches": [ "register-long.patch" ], "summary": "This package provides the Mesa OpenGL Utility library.\n", "version": [ { "downloads": [ "https://archive.mesa3d.org/glu/glu-9.0.0.tar.gz" ], "version": "9.0.0" }, { "downloads": [ "https://archive.mesa3d.org/glu/glu-9.0.1.tar.gz" ], "version": "9.0.1" }, { "downloads": [ "https://archive.mesa3d.org/glu/glu-9.0.2.tar.gz" ], "version": "9.0.2" } ] }, "gluegen": { "alias": [], "categories": [], "dependencies": [ "ant", "c", "java" ], "downloads": [ "https://github.com/WadeWalker/gluegen.git" ], "homepages": [ "https://jogamp.org/gluegen/www/" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "gluegen", "patches": [ "javalib.aarch64.patch when target=aarch64:", "cpptasks.fj.patch when %fj" ], "summary": "GlueGen is a tool which automatically generates the Java and JNI code\nnecessary to call C libraries.\n", "version": [ { "repositories": [ { "branch": "java-11-fixes", "type": "git", "url": "https://github.com/WadeWalker/gluegen.git" } ], "version": "java-11-fixes" } ] }, "glusterfs": { "alias": [], "categories": [], "dependencies": [ "acl", "autoconf", "automake", "bison", "c", "flex", "gmake", "gnuconfig", "libtirpc", "libtool", "m4", "pkgconfig", "rpcsvc-proto", "userspace-rcu", "uuid" ], "downloads": [ "https://download.gluster.org/pub/gluster/glusterfs/7/7.3/glusterfs-7.3.tar.gz" ], "homepages": [ "https://www.gluster.org/" ], "licenses": [ "LGPL-3.0-or-later" ], "maintainers": [], "name": "glusterfs", "patches": [], "summary": "Gluster is a software defined distributed storage that can scale to\nseveral petabytes. It provides interfaces for object, block and file\nstorage.\n", "version": [ { "downloads": [ "https://download.gluster.org/pub/gluster/glusterfs/6/6.7/glusterfs-6.7.tar.gz" ], "version": "6.7" }, { "downloads": [ "https://download.gluster.org/pub/gluster/glusterfs/6/6.8/glusterfs-6.8.tar.gz" ], "version": "6.8" }, { "downloads": [ "https://download.gluster.org/pub/gluster/glusterfs/7/7.0/glusterfs-7.0.tar.gz" ], "version": "7.0" }, { "downloads": [ "https://download.gluster.org/pub/gluster/glusterfs/7/7.1/glusterfs-7.1.tar.gz" ], "version": "7.1" }, { "downloads": [ "https://download.gluster.org/pub/gluster/glusterfs/7/7.2/glusterfs-7.2.tar.gz" ], "version": "7.2" }, { "downloads": [ "https://download.gluster.org/pub/gluster/glusterfs/7/7.3/glusterfs-7.3.tar.gz" ], "version": "7.3" } ] }, "glvis": { "alias": [], "categories": [ "radiuss", "e4s" ], "dependencies": [ "c", "cxx", "fontconfig", "freetype", "gl", "glew", "glm", "glu", "gmake", "libpng", "libtiff", "libx11", "mfem", "sdl2", 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is an open source (GNU General Public License) InSAR processing\nsystem designed for users familiar with Generic Mapping Tools (GMT).\n", "version": [ { "downloads": [ "https://elenacreinisch.com/gmtsar/GMTSAR-5.6.tar.gz" ], "version": "5.6" } ] }, "gnat": { "alias": [], "categories": [], "dependencies": [ "gmake" ], "downloads": [ "http://mirrors.cdn.adacore.com/art/5739cefdc7a447658e0b016b" ], "homepages": [ "https://libre.adacore.com/tools/gnat-gpl-edition/" ], "licenses": [], "maintainers": [], "name": "gnat", "patches": [], "summary": "The GNAT Ada compiler. Ada is a modern programming language designed for\nlarge, long-lived applications - and embedded systems in particular -\nwhere reliability and efficiency are essential.\n", "version": [ { "downloads": [ "http://mirrors.cdn.adacore.com/art/5739cefdc7a447658e0b016b" ], "version": "2016" } ] }, "gnds": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "gmake", "ninja", "pugixml" ], "downloads": [ "https://code.ornl.gov/RNSD/gnds/-/archive/v0.0.1/gnds-v0.0.1.tar.gz" ], "homepages": [ "https://code.ornl.gov/RNSD/gnds" ], "licenses": [], "maintainers": [], "name": "gnds", "patches": [], "summary": "The GNDS package is an implementation of the OECD specifications for the\nGeneralized Nuclear Database Structure used in the AMPX cross section\nprocessing code.\n", "version": [ { "downloads": [ "https://code.ornl.gov/RNSD/gnds/-/archive/v0.0.1/gnds-v0.0.1.tar.gz" ], "version": "0.0.1" } ] }, "gnina": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "cmake", "cuda", "cudnn", "cxx", "glog", "gmake", "hdf5", "jsoncpp", "libmolgrid", "ninja", "openbabel", "openblas", "protobuf", "py-numpy", "py-pytest", "py-torch", "python", "rdkit", "zlib-api" ], "downloads": [ "https://github.com/gnina/gnina/archive/refs/tags/vmaster.tar.gz", "https://github.com/gnina/gnina/archive/refs/tags/v1.3.tar.gz", "https://github.com/gnina/gnina/archive/refs/tags/v1.1.tar.gz", "https://github.com/gnina/gnina/archive/refs/tags/v1.0.3.tar.gz", "https://github.com/gnina/gnina.git" ], "homepages": [ "https://github.com/gnina/gnina" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "RMeli" ], "name": "gnina", "patches": [ "https://github.com/gnina/gnina/commit/b59e958c5d02c9348b7d327fa54a4b1bae5d55c4.patch?full_index=1 when @1.3", "https://github.com/gnina/gnina/commit/c33e0ccff8a5a36053599509f394cc2b84311563.patch?full_index=1 when @1.3" ], "summary": "gnina (pronounced NEE-na) is a molecular docking program with integrated\nsupport for scoring and optimizing ligands using convolutional neural\nnetworks.\n", "version": [ { "downloads": [ "https://github.com/gnina/gnina/archive/refs/tags/v1.0.3.tar.gz" ], "version": "1.0.3" }, { "downloads": [ "https://github.com/gnina/gnina/archive/refs/tags/v1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ "https://github.com/gnina/gnina/archive/refs/tags/v1.3.tar.gz" ], "version": "1.3" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/gnina/gnina.git" } ], "version": "master" } ] }, "gnome-common": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://github.com/GNOME/gnome-common/archive/3.18.0.tar.gz", "https://github.com/GNOME/gnome-common/archive/3.14.0.tar.gz", "https://github.com/GNOME/gnome-common/archive/3.12.0.tar.gz", "https://github.com/GNOME/gnome-common/archive/3.10.0.tar.gz", "https://github.com/GNOME/gnome-common/archive/3.7.4.tar.gz", "https://github.com/GNOME/gnome-common/archive/3.6.0.tar.gz", "https://github.com/GNOME/gnome-common/archive/3.5.91.tar.gz", "https://github.com/GNOME/gnome-common/archive/3.5.5.tar.gz", "https://github.com/GNOME/gnome-common/archive/3.4.0.1.tar.gz" ], "homepages": [ "https://gitlab.gnome.org/GNOME" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "gnome-common", "patches": [], "summary": "Module containing various files needed to bootstrap GNOME modules built\nfrom git.\n", "version": [ { "downloads": [ "https://github.com/GNOME/gnome-common/archive/3.10.0.tar.gz" ], "version": "3.10.0" }, { "downloads": [ "https://github.com/GNOME/gnome-common/archive/3.12.0.tar.gz" ], "version": "3.12.0" }, { "downloads": [ "https://github.com/GNOME/gnome-common/archive/3.14.0.tar.gz" ], "version": "3.14.0" }, { "downloads": [ "https://github.com/GNOME/gnome-common/archive/3.18.0.tar.gz" ], "version": "3.18.0" }, { "downloads": [ 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}, "gnupg": { "alias": [], "categories": [ "detectable" ], "dependencies": [ "c", "gmake", "gnuconfig", "iconv", "libassuan", "libgcrypt", "libgpg-error", "libksba", "npth", "pinentry", "zlib-api" ], "downloads": [ "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.5.12.tar.bz2", "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.5.11.tar.bz2", "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.5.6.tar.bz2", "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.5.3.tar.bz2", "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.5.2.tar.bz2", "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.5.1.tar.bz2", "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.5.0.tar.bz2", "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.4.7.tar.bz2", "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.4.6.tar.bz2", "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.4.5.tar.bz2", "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.4.4.tar.bz2", "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.4.3.tar.bz2", "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.4.2.tar.bz2", "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.4.1.tar.bz2", "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.4.0.tar.bz2", "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.3.8.tar.bz2", "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.3.7.tar.bz2", "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.2.40.tar.bz2" ], "homepages": [ "https://gnupg.org/index.html" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [ "alalazo" ], "name": "gnupg", "patches": [], "summary": "GNU Pretty Good Privacy (PGP) package.\n", "version": [ { "downloads": [ "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.2.40.tar.bz2" ], "version": "2.2.40" }, { "downloads": [ "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.3.7.tar.bz2" ], "version": "2.3.7" }, { "downloads": [ "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.3.8.tar.bz2" ], "version": "2.3.8" }, { "downloads": [ "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.4.0.tar.bz2" ], "version": "2.4.0" }, { "downloads": [ "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.4.1.tar.bz2" ], "version": "2.4.1" }, { "downloads": [ "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.4.2.tar.bz2" ], "version": "2.4.2" }, { "downloads": [ "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.4.3.tar.bz2" ], "version": "2.4.3" }, { "downloads": [ "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.4.4.tar.bz2" ], "version": "2.4.4" }, { "downloads": [ "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.4.5.tar.bz2" ], "version": "2.4.5" }, { "downloads": [ "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.4.6.tar.bz2" ], "version": "2.4.6" }, { "downloads": [ "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.4.7.tar.bz2" ], "version": "2.4.7" }, { "downloads": [ "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.5.0.tar.bz2" ], "version": "2.5.0" }, { "downloads": [ "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.5.1.tar.bz2" ], "version": "2.5.1" }, { "downloads": [ "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.5.11.tar.bz2" ], "version": "2.5.11" }, { "downloads": [ "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.5.12.tar.bz2" ], "version": "2.5.12" }, { "downloads": [ "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.5.2.tar.bz2" ], "version": "2.5.2" }, { "downloads": [ "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.5.3.tar.bz2" ], "version": "2.5.3" }, { "downloads": [ "https://gnupg.org/ftp/gcrypt/gnupg/gnupg-2.5.6.tar.bz2" ], "version": "2.5.6" } ] }, "gnuplot": { "alias": [], "categories": [], "dependencies": [ "c", "cairo", "cxx", "gmake", "gnuconfig", "iconv", "libcerf", "libgd", "libsm", "libx11", "libxpm", "pango", "pkgconfig", "qt", "readline", "wxwidgets" ], "downloads": [ "https://downloads.sourceforge.net/project/gnuplot/gnuplot/6.0.0/gnuplot-6.0.0.tar.gz", "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.4.10/gnuplot-5.4.10.tar.gz", "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.4.3/gnuplot-5.4.3.tar.gz", "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.4.2/gnuplot-5.4.2.tar.gz", "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.2.8/gnuplot-5.2.8.tar.gz", "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.2.7/gnuplot-5.2.7.tar.gz", "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.2.5/gnuplot-5.2.5.tar.gz", "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.2.2/gnuplot-5.2.2.tar.gz", "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.2.0/gnuplot-5.2.0.tar.gz", "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.0.7/gnuplot-5.0.7.tar.gz", "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.0.6/gnuplot-5.0.6.tar.gz", "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.0.5/gnuplot-5.0.5.tar.gz", "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.0.1/gnuplot-5.0.1.tar.gz" ], "homepages": [ "http://www.gnuplot.info" ], "licenses": [ "MIT" ], "maintainers": [], "name": "gnuplot", "patches": [ "term_include.patch" ], "summary": "Gnuplot is a portable command-line driven graphing utility for Linux,\nOS/2, MS Windows, OSX, VMS, and many other platforms. The source code is\ncopyrighted but freely distributed (i.e., you don't have to pay for it).\nIt was originally created to allow scientists and students to visualize\nmathematical functions and data interactively, but has grown to support\nmany non-interactive uses such as web scripting. It is also used as a\nplotting engine by third-party applications like Octave. Gnuplot has\nbeen supported and under active development since 1986\n", "version": [ { "downloads": [ "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.0.1/gnuplot-5.0.1.tar.gz" ], "version": "5.0.1" }, { "downloads": [ "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.0.5/gnuplot-5.0.5.tar.gz" ], "version": "5.0.5" }, { "downloads": [ "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.0.6/gnuplot-5.0.6.tar.gz" ], "version": "5.0.6" }, { "downloads": [ "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.0.7/gnuplot-5.0.7.tar.gz" ], "version": "5.0.7" }, { "downloads": [ "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.2.0/gnuplot-5.2.0.tar.gz" ], "version": "5.2.0" }, { "downloads": [ "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.2.2/gnuplot-5.2.2.tar.gz" ], "version": "5.2.2" }, { "downloads": [ "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.2.5/gnuplot-5.2.5.tar.gz" ], "version": "5.2.5" }, { "downloads": [ "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.2.7/gnuplot-5.2.7.tar.gz" ], "version": "5.2.7" }, { "downloads": [ "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.2.8/gnuplot-5.2.8.tar.gz" ], "version": "5.2.8" }, { "downloads": [ "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.4.10/gnuplot-5.4.10.tar.gz" ], "version": "5.4.10" }, { "downloads": [ "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.4.2/gnuplot-5.4.2.tar.gz" ], "version": "5.4.2" }, { "downloads": [ "https://downloads.sourceforge.net/project/gnuplot/gnuplot/5.4.3/gnuplot-5.4.3.tar.gz" ], "version": "5.4.3" }, { "downloads": [ "https://downloads.sourceforge.net/project/gnuplot/gnuplot/6.0.0/gnuplot-6.0.0.tar.gz" ], "version": "6.0.0" } ] }, "gnuradio": { "alias": [], "categories": [], "dependencies": [ "adwaita-icon-theme", "boost", "c", "cairo", "cmake", "cppzmq", "cxx", "fftw", "fortran", "gmake", "gmp", "gsettings-desktop-schemas", "gsl", "hicolor-icon-theme", "log4cpp", "ninja", "py-click", "py-click-plugins", "py-numpy", "py-pygobject", "py-pyqt5", "py-pyyaml", "py-six", "python", "python-venv", "qwt", "swig", "volk" ], "downloads": [ "https://github.com/gnuradio/gnuradio/archive/v3.8.2.0.tar.gz" ], "homepages": [ "https://www.gnuradio.org/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [ "aweits" ], "name": "gnuradio", "patches": [], "summary": "GNU Radio is a free & open-source software development toolkit that\nprovides signal processing blocks to implement software radios. It can\nbe used with readily-available, low-cost external RF hardware to create\nsoftware-defined radios, or without hardware in a simulation-like\nenvironment. It is widely used in hobbyist, academic, and commercial\nenvironments to support both wireless communications research and real-\nworld radio systems.\n", "version": [ { "downloads": [ "https://github.com/gnuradio/gnuradio/archive/v3.8.2.0.tar.gz" ], "version": "3.8.2.0" } ] }, "gnutls": { "alias": [], "categories": [], "dependencies": [ "brotli", "c", "cxx", "gettext", "gmake", "gnuconfig", "guile", "libidn2", "libtool", "nettle", "pkgconfig", "zlib-api", "zstd" ], "downloads": [ "https://www.gnupg.org/ftp/gcrypt/gnutls/v3.5/gnutls-3.5.19.tar.xz", "https://gitlab.com/gnutls/gnutls.git" ], "homepages": [ "https://www.gnutls.org" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [ "alecbcs" ], "name": "gnutls", "patches": [], "summary": "GnuTLS: The GNU Transport Layer Security Library A secure communications\nlibrary implementing SSL, TLS and DTLS protocols with a simple C API for\naccessing secure communications protocols. Provides APIs for X.509, PKCS\n#12, OpenPGP and other security structures. Designed for portability and\nefficiency with focus on security and interoperability.\n", "version": [ { "downloads": [ "https://www.gnupg.org/ftp/gcrypt/gnutls/v3.3/gnutls-3.3.9.tar.xz" ], "version": "3.3.9" }, { "downloads": [ "https://www.gnupg.org/ftp/gcrypt/gnutls/v3.5/gnutls-3.5.10.tar.xz" ], "version": "3.5.10" }, { "downloads": [ "https://www.gnupg.org/ftp/gcrypt/gnutls/v3.5/gnutls-3.5.13.tar.xz" ], "version": "3.5.13" }, { "downloads": [ "https://www.gnupg.org/ftp/gcrypt/gnutls/v3.5/gnutls-3.5.19.tar.xz" ], "version": "3.5.19" }, { "downloads": [ "https://www.gnupg.org/ftp/gcrypt/gnutls/v3.5/gnutls-3.5.9.tar.xz" ], "version": "3.5.9" }, { "downloads": [ "https://www.gnupg.org/ftp/gcrypt/gnutls/v3.6/gnutls-3.6.14.tar.xz" ], "version": "3.6.14" }, { "downloads": [ "https://www.gnupg.org/ftp/gcrypt/gnutls/v3.6/gnutls-3.6.15.tar.xz" ], "version": "3.6.15" }, { "downloads": [ "https://www.gnupg.org/ftp/gcrypt/gnutls/v3.6/gnutls-3.6.7.1.tar.xz" ], "version": "3.6.7.1" }, { 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It provides a flexible, scalable and fault\ntolerant interface for parallel applications.\n", "version": [ { "downloads": [ "https://github.com/cc-hpc-itwm/GPI-2/archive/refs/tags/v1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://github.com/cc-hpc-itwm/GPI-2/archive/refs/tags/v1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://github.com/cc-hpc-itwm/GPI-2/archive/refs/tags/v1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://github.com/cc-hpc-itwm/GPI-2/archive/refs/tags/v1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://github.com/cc-hpc-itwm/GPI-2/archive/refs/tags/v1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://github.com/cc-hpc-itwm/GPI-2/archive/refs/tags/v1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://github.com/cc-hpc-itwm/GPI-2/archive/refs/tags/v1.3.2.tar.gz" ], "version": "1.3.2" }, { "downloads": [ "https://github.com/cc-hpc-itwm/GPI-2/archive/refs/tags/v1.3.3.tar.gz" ], "version": "1.3.3" }, { "downloads": [ "https://github.com/cc-hpc-itwm/GPI-2/archive/refs/tags/v1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://github.com/cc-hpc-itwm/GPI-2/archive/refs/tags/v1.5.0.tar.gz" ], "version": "1.5.0" }, { "downloads": [ "https://github.com/cc-hpc-itwm/GPI-2/archive/refs/tags/v1.5.1.tar.gz" ], "version": "1.5.1" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/cc-hpc-itwm/GPI-2.git" } ], "version": "develop" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/cc-hpc-itwm/GPI-2.git" } ], "version": "master" } ] }, "gpi-space": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "chrpath", "cmake", "cxx", "gmake", "gpi-2", "hwloc", "libssh2", "ninja", "openssl", "pkgconfig", "qt" ], "downloads": [ "https://github.com/cc-hpc-itwm/gpispace/archive/refs/tags/v24.12.tar.gz", "https://github.com/cc-hpc-itwm/gpispace/archive/refs/tags/v23.06.tar.gz", "https://github.com/cc-hpc-itwm/gpispace/archive/refs/tags/v22.12.tar.gz", "https://github.com/cc-hpc-itwm/gpispace/archive/refs/tags/v22.09.tar.gz", "https://github.com/cc-hpc-itwm/gpispace/archive/refs/tags/v22.06.tar.gz", "https://github.com/cc-hpc-itwm/gpispace/archive/refs/tags/v22.03.tar.gz", "https://github.com/cc-hpc-itwm/gpispace/archive/refs/tags/v21.12.1.tar.gz", "https://github.com/cc-hpc-itwm/gpispace/archive/refs/tags/v21.12.tar.gz", "https://github.com/cc-hpc-itwm/gpispace/archive/refs/tags/v21.09.tar.gz", "https://github.com/cc-hpc-itwm/gpispace/archive/refs/tags/vlatest.tar.gz", "https://github.com/cc-hpc-itwm/gpispace.git" ], "homepages": [ "https://www.gpi-space.de" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [ "acastanedam", "mrahn", "mzeyen1985", "rumach", "tiberot" ], "name": "gpi-space", "patches": [], "summary": " GPI-Space is a task-based workflow management system for parallel\napplications. It allows the developers to build domain-specific\nworkflows using their own parallelization patterns, data management\npolicies and I/O routines, while relying on the runtime system for the\nworkflow management. The GPI-Space ecosystem \"auto-manages\" the\napplication with dynamic scheduling, built-in distributed memory\ntransfers and distributed tasks execution.\n", "version": [ { "downloads": [ "https://github.com/cc-hpc-itwm/gpispace/archive/refs/tags/v21.09.tar.gz" ], "version": "21.09" }, { "downloads": [ "https://github.com/cc-hpc-itwm/gpispace/archive/refs/tags/v21.12.tar.gz" ], "version": "21.12" }, { "downloads": [ "https://github.com/cc-hpc-itwm/gpispace/archive/refs/tags/v21.12.1.tar.gz" ], "version": "21.12.1" }, { "downloads": [ "https://github.com/cc-hpc-itwm/gpispace/archive/refs/tags/v22.03.tar.gz" ], "version": "22.03" }, { "downloads": [ "https://github.com/cc-hpc-itwm/gpispace/archive/refs/tags/v22.06.tar.gz" ], "version": "22.06" }, { "downloads": [ "https://github.com/cc-hpc-itwm/gpispace/archive/refs/tags/v22.09.tar.gz" ], "version": "22.09" }, { "downloads": [ "https://github.com/cc-hpc-itwm/gpispace/archive/refs/tags/v22.12.tar.gz" ], "version": "22.12" }, { "downloads": [ "https://github.com/cc-hpc-itwm/gpispace/archive/refs/tags/v23.06.tar.gz" ], "version": "23.06" }, { "downloads": [ "https://github.com/cc-hpc-itwm/gpispace/archive/refs/tags/v24.12.tar.gz" ], "version": "24.12" }, { "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/cc-hpc-itwm/gpispace.git" } ], "version": "latest" } ] }, "gplates": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "cgal", "cmake", "cxx", "gdal", "gl", "glew", "glu", "gmake", "ninja", "proj", "python", "qt", "qwt", "zlib-api" ], "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/gplates_2.3.0_src.zip" ], "homepages": [ "https://www.gplates.org" ], "licenses": [], "maintainers": [], "name": "gplates", "patches": [], "summary": "GPlates is desktop software for the interactive visualisation of plate\ntectonics. GPlates offers a novel combination of interactive plate\ntectonic reconstructions, geographic information system (GIS)\nfunctionality and raster data visualisation. GPlates enables both the\nvisualisation and the manipulation of plate tectonic reconstructions and\nassociated data through geological time.\n", "version": [ { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/gplates_2.3.0_src.zip" ], "version": "2.3.0" } ] }, "gprofng-gui": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "gmake", "gnuconfig", "java", "libtool" ], "downloads": [ "https://ftpmirror.gnu.org/gprofng-gui/gprofng-gui-develop.tar.gz", "https://ftpmirror.gnu.org/gprofng-gui/gprofng-gui-1.1.tar.gz", "https://ftpmirror.gnu.org/gprofng-gui/gprofng-gui-1.0.tar.gz", "https://git.savannah.gnu.org/git/gprofng-gui.git" ], "homepages": [ "https://sourceware.org/binutils/wiki/gprofng" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [ "pramodk" ], "name": "gprofng-gui", "patches": [], "summary": "A graphical environment to analyze the performance data generated by the\ngprofng\n", "version": [ { "downloads": [ 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"liuyangzhuan" ], "name": "gptune", "patches": [], "summary": "GPTune is an autotuning framework that relies on multitask and transfer\nlearnings to help solve the underlying black-box optimization problem\nusing Bayesian optimization methodologies.\n", "version": [ { "downloads": [ "https://github.com/gptune/GPTune/archive/refs/tags/2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://github.com/gptune/GPTune/archive/refs/tags/3.0.0.tar.gz" ], "version": "3.0.0" }, { "downloads": [ "https://github.com/gptune/GPTune/archive/refs/tags/4.0.0.tar.gz" ], "version": "4.0.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/gptune/GPTune.git" } ], "version": "master" } ] }, "gpu-burn": { "alias": [], "categories": [], "dependencies": [ "cuda", "cxx", "gmake" ], "downloads": [ "http://wili.cc/blog/entries/gpu-burn/gpu_burn-master.tar.gz", "http://wili.cc/blog/entries/gpu-burn/gpu_burn-1.1.tar.gz", 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The code is developed to perform ab initio\ncalculations of realistic periodic systems with large unit cells\ncontaining transition metal atoms.\n", "version": [ { "repositories": [ { "commit": "7b076bf07930157d9583f9e942867bc08605a4dd", "type": "git", "url": "https://github.com/Green-Phys/green-mbpt" } ], "version": "seet-dev" } ] }, "greenx": { "alias": [], "categories": [], "dependencies": [ "blas", "cmake", "cxx", "fortran", "gmake", "gmp", "lapack", "ninja" ], "downloads": [ "https://github.com/nomad-coe/greenX/archive/refs/tags/vmain.tar.gz", "https://github.com/nomad-coe/greenX/archive/refs/tags/v2.2.tar.gz", "https://github.com/nomad-coe/greenX/archive/refs/tags/v2.1.tar.gz", "https://github.com/nomad-coe/greenX.git" ], "homepages": [ "https://nomad-coe.github.io/greenX" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "RMeli" ], "name": "greenx", "patches": [ "https://github.com/nomad-coe/greenX/commit/96c4b61656c13b5aceb2906ad5efb93a745dc6ae.patch?full_index=1 when @:2.3" ], "summary": "GreenX: An open-source library that supports exascale implementations of\nGreen's-function-based methodologies.\n", "version": [ { "downloads": [ "https://github.com/nomad-coe/greenX/archive/refs/tags/v2.1.tar.gz" ], "version": "2.1" }, { "downloads": [ "https://github.com/nomad-coe/greenX/archive/refs/tags/v2.2.tar.gz" ], "version": "2.2" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/nomad-coe/greenX.git" } ], "version": "main" } ] }, "grep": { "alias": [], "categories": [ "detectable" ], "dependencies": [ "c", "gmake", "gnuconfig", "pcre", "pcre2" ], "downloads": [ "https://ftpmirror.gnu.org/grep/grep-3.11.tar.xz", "https://ftpmirror.gnu.org/grep/grep-3.10.tar.xz", "https://ftpmirror.gnu.org/grep/grep-3.9.tar.xz", "https://ftpmirror.gnu.org/grep/grep-3.7.tar.xz", "https://ftpmirror.gnu.org/grep/grep-3.3.tar.xz" ], "homepages": [ "https://www.gnu.org/software/grep/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "grep", "patches": [], "summary": "Grep searches one or more input files for lines containing a match to a\nspecified pattern\n", "version": [ { "downloads": [ "https://ftpmirror.gnu.org/grep/grep-3.10.tar.xz" ], "version": "3.10" }, { "downloads": [ "https://ftpmirror.gnu.org/grep/grep-3.11.tar.xz" ], "version": "3.11" }, { "downloads": [ "https://ftpmirror.gnu.org/grep/grep-3.3.tar.xz" ], "version": "3.3" }, { "downloads": [ "https://ftpmirror.gnu.org/grep/grep-3.7.tar.xz" ], "version": "3.7" }, { "downloads": [ "https://ftpmirror.gnu.org/grep/grep-3.9.tar.xz" ], "version": "3.9" } ] }, "grib-util": { "alias": [], "categories": [], "dependencies": [ "bacio", "c", "cmake", "fortran", "g2", "g2c", "gmake", "ip", "jasper", "libpng", "ninja", "sp", "w3emc", "w3nco", "zlib-api" ], "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-grib_util/archive/refs/tags/vdevelop.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-grib_util/archive/refs/tags/v1.5.0.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-grib_util/archive/refs/tags/v1.4.0.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-grib_util/archive/refs/tags/v1.3.0.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-grib_util/archive/refs/tags/v1.2.4.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-grib_util/archive/refs/tags/v1.2.3.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-grib_util" ], "homepages": [ "https://github.com/NOAA-EMC/NCEPLIBS-grib_util" ], "licenses": [], "maintainers": [ "AlexanderRichert-NOAA", "Hang-Lei-NOAA", "edwardhartnett" ], "name": "grib-util", "patches": [], "summary": "This is a collection of NCEP GRIB related utilities. 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Gridlab-D is a\nflexible simulation environment that can be integrated with a variety of\nthird-party data management and analysis tools.\n", "version": [ { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/gridlab-d/gridlab-d" } ], "version": "develop" } ] }, "grnboost": { "alias": [], "categories": [], "dependencies": [ "java", "sbt", "spark", "xgboost" ], "downloads": [], "homepages": [ "https://github.com/aertslab/GRNBoost" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "grnboost", "patches": [], "summary": "GRNBoost is a library built on top of Apache Spark that implements a\nscalable strategy for gene regulatory network (GRN) inference. See\nhttps://github.com/aertslab/GRNBoost/blob/master/docs/user_guide.md for\nthe user guide. The location of xgboost4j-.jar and GRNBoost.jar\nare set to $XGBOOST_JAR and $GRNBOOST_JAR. 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It was originally\ndeveloped in the Biophysical Chemistry department of University of\nGroningen, and is now maintained by contributors in universities and\nresearch centers across the world. GROMACS is one of the fastest and\nmost popular software packages available and can run on CPUs as well as\nGPUs. It is free, open source released under the GNU Lesser General\nPublic License. Before the version 4.6, GROMACS was released under the\nGNU General Public License.\n", "version": [ { "downloads": [ "https://ftp.gromacs.org/gromacs/gromacs-2019.6.tar.gz" ], "version": "2019.6" }, { "downloads": [ "https://ftp.gromacs.org/gromacs/gromacs-2024.tar.gz" ], "version": "2024" }, { "downloads": [ "https://ftp.gromacs.org/gromacs/gromacs-2024.1.tar.gz" ], "version": "2024.1" }, { "downloads": [ "https://ftp.gromacs.org/gromacs/gromacs-2024.2.tar.gz" ], "version": "2024.2" }, { "downloads": [ "https://ftp.gromacs.org/gromacs/gromacs-2024.3.tar.gz" ], "version": "2024.3" }, { "downloads": [ "https://ftp.gromacs.org/gromacs/gromacs-2024.4.tar.gz" ], "version": "2024.4" }, { "downloads": [ "https://ftp.gromacs.org/gromacs/gromacs-2024.5.tar.gz" ], "version": "2024.5" }, { "downloads": [ "https://ftp.gromacs.org/gromacs/gromacs-2024.6.tar.gz" ], "version": "2024.6" }, { "downloads": [ "https://ftp.gromacs.org/gromacs/gromacs-2025.0.tar.gz" ], "version": "2025.0" }, { 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It\nuses docbook for intermediate files and can produce html by default and\npdf/man-pages with some extra work.\n", "version": [ { "downloads": [ "https://download.gnome.org/sources/gtk-doc/1.32/gtk-doc-1.32.tar.xz" ], "version": "1.32" }, { "downloads": [ "https://download.gnome.org/sources/gtk-doc/1.33/gtk-doc-1.33.2.tar.xz" ], "version": "1.33.2" } ] }, "gtkmm": { "alias": [], "categories": [], "dependencies": [ "atk", "cairomm", "cxx", "glibmm", "gmake", "gnuconfig", "gtkplus", "pangomm", "pkgconfig" ], "downloads": [ "https://ftp.acc.umu.se/pub/GNOME/sources/gtkmm/2.16/gtkmm-2.16.0.tar.gz" ], "homepages": [ "https://www.gtkmm.org/en/" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "gtkmm", "patches": [], "summary": "Gtkmm is the official C++ interface for the popular GUI library GTK+.\n", "version": [ { "downloads": [ "https://ftp.acc.umu.se/pub/GNOME/sources/gtkmm/2.16/gtkmm-2.16.0.tar.gz" ], "version": "2.16.0" }, { "downloads": [ 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"c", "cmake", "gmake", "ninja" ], "downloads": [ "https://github.com/GTkorvo/cercs_env/archive/vdevelop.tar.gz", "https://github.com/GTkorvo/cercs_env/archive/v1.0.tar.gz", "https://github.com/GTkorvo/cercs_env.git" ], "homepages": [ "https://github.com/GTkorvo/cercs_env" ], "licenses": [], "maintainers": [], "name": "gtkorvo-cercs-env", "patches": [], "summary": "A utility library used by some GTkorvo packages.\n", "version": [ { "downloads": [ "https://github.com/GTkorvo/cercs_env/archive/v1.0.tar.gz" ], "version": "1.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/GTkorvo/cercs_env.git" } ], "version": "develop" } ] }, "gtkorvo-dill": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/GTkorvo/dill/archive/vdevelop.tar.gz", "https://github.com/GTkorvo/dill/archive/v2.4.tar.gz", "https://github.com/GTkorvo/dill/archive/v2.1.tar.gz", "https://github.com/GTkorvo/dill.git" ], "homepages": [ "https://github.com/GTkorvo/dill" ], "licenses": [], "maintainers": [], "name": "gtkorvo-dill", "patches": [ "2.4-fix-clear_cache.patch when @2.4", "2.1-fix-clear_cache.patch when @2.1" ], "summary": "DILL provides instruction-level code generation, register allocation and\nsimple optimizations for generating executable code directly into memory\nregions for immediate use.\n", "version": [ { "downloads": [ "https://github.com/GTkorvo/dill/archive/v2.1.tar.gz" ], "version": "2.1" }, { "downloads": [ "https://github.com/GTkorvo/dill/archive/v2.4.tar.gz" ], "version": "2.4" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/GTkorvo/dill.git" } ], "version": "develop" } ] }, "gtkorvo-enet": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://github.com/GTkorvo/enet/archive/v1.3.14.tar.gz", 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This is a downstream branch of\nlsalzman's ENet. This version has expanded the client ID to handle more\nclients. The original is at https://github.com/lsalzman/enet.\n", "version": [ { "downloads": [ "https://github.com/GTkorvo/enet/archive/v1.3.13.tar.gz" ], "version": "1.3.13" }, { "downloads": [ "https://github.com/GTkorvo/enet/archive/v1.3.14.tar.gz" ], "version": "1.3.14" } ] }, "gtkplus": { "alias": [], "categories": [], "dependencies": [ "at-spi2-core", "atk", "c", "cairo", "cups", "cxx", "fixesproto", "fribidi", "gdk-pixbuf", "gettext", "glib", "gmake", "gnuconfig", "gobject-introspection", "inputproto", "libepoxy", "librsvg", "libxfixes", "libxi", "libxkbcommon", "meson", "ninja", "pango", "pkgconfig", "shared-mime-info", "xrandr" ], "downloads": [ "https://download.gnome.org/sources/gtk/3.24/gtk-3.24.50.tar.xz" ], "homepages": [ "https://www.gtk.org/" ], "licenses": [ "LGPL-2.0-or-later" ], "maintainers": [], "name": "gtkplus", "patches": [ "no-demos.patch when @2.0:2" ], "summary": "The GTK+ package contains libraries used for creating graphical user\ninterfaces for applications.\n", "version": [ { "downloads": [ "https://download.gnome.org/sources/gtk/3.24/gtk-3.24.26.tar.xz" ], "version": "3.24.26" }, { "downloads": [ "https://download.gnome.org/sources/gtk/3.24/gtk-3.24.29.tar.xz" ], "version": "3.24.29" }, { "downloads": [ "https://download.gnome.org/sources/gtk/3.24/gtk-3.24.41.tar.xz" ], "version": "3.24.41" }, { "downloads": [ "https://download.gnome.org/sources/gtk/3.24/gtk-3.24.43.tar.xz" ], "version": "3.24.43" }, { "downloads": [ "https://download.gnome.org/sources/gtk/3.24/gtk-3.24.50.tar.xz" ], "version": "3.24.50" } ] }, "gtksourceview": { "alias": [], "categories": [], "dependencies": [ "atk", "autoconf", "automake", "c", "cxx", "fortran", "gdk-pixbuf", "gettext", "glib", "gmake", "gnuconfig", "gobject-introspection", "gtkplus", "iconv", "intltool", "libtool", "libxml2", "m4", "meson", "ninja", "pango", "pkgconfig", "vala" ], "downloads": [ "https://download.gnome.org/sources/gtksourceview/4.2/gtksourceview-4.2.0.tar.xz" ], "homepages": [ "https://projects.gnome.org/gtksourceview" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "gtksourceview", "patches": [], "summary": "GtkSourceView is a GNOME library that extends GtkTextView, the standard\nGTK+ widget for multiline text editing. GtkSourceView adds support for\nsyntax highlighting, undo/redo, file loading and saving, search and\nreplace, a completion system, printing, displaying line numbers, and\nother features typical of a source code editor.\n", "version": [ { "downloads": [ "https://download.gnome.org/sources/gtksourceview/3.24/gtksourceview-3.24.11.tar.xz" ], "version": "3.24.11" }, { "downloads": [ "https://download.gnome.org/sources/gtksourceview/4.2/gtksourceview-4.2.0.tar.xz" ], "version": "4.2.0" }, { "downloads": [ "https://download.gnome.org/sources/gtksourceview/4.8/gtksourceview-4.8.4.tar.xz" ], "version": "4.8.4" } ] }, "gts": { "alias": [], "categories": [], "dependencies": [ "c", "glib", "gmake", "gnuconfig", "pkgconfig" ], "downloads": [ "https://gts.sourceforge.net/tarballs/gts-snapshot-121130.tar.gz" ], "homepages": [ "https://gts.sourceforge.net/index.html" ], "licenses": [ "LGPL-2.0-only" ], "maintainers": [], "name": "gts", "patches": [], "summary": "GTS stands for the GNU Triangulated Surface Library. It is an Open\nSource Free Software Library intended to provide a set of useful\nfunctions to deal with 3D surfaces meshed with interconnected triangles.\nThe source code is available free of charge under the Free Software LGPL\nlicense. The code is written entirely in C with an object-oriented\napproach based mostly on the design of GTK+. 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FCA\nis a MPI-integrated software package that utilizes CORE-Direct\ntechnology for implementing the MPI collective communications.\n", "version": [ { "downloads": [ [] ], "version": "3.9.1927" }, { "downloads": [ [] ], "version": "4.7.3199" }, { "downloads": [ [] ], "version": "4.7.3202" }, { "downloads": [ [] ], "version": "4.7.3208" }, { "downloads": [ [] ], "version": "4.8.3217" }, { "downloads": [ [] ], "version": "4.8.3220" }, { "downloads": [ [] ], "version": "4.8.3221" }, { "downloads": [ [] ], "version": "4.8.3223" }, { "downloads": [ [] ], "version": "4.8.3227" }, { "downloads": [ [] ], "version": "4.8.3228" }, { "downloads": [ [] ], "version": "4.8.3230" } ] }, "hdf": { "alias": [], "categories": [], "dependencies": [ "bison", "c", "cxx", "flex", "fortran", "gmake", "gnuconfig", "java", "jpeg", "rpc", "szip", "zlib-api" ], "downloads": [ "https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.15/src/hdf-4.2.15.tar.gz", "https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.14/src/hdf-4.2.14.tar.gz", "https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.13/src/hdf-4.2.13.tar.gz", "https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.12/src/hdf-4.2.12.tar.gz", "https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.11/src/hdf-4.2.11.tar.gz" ], "homepages": [ "https://portal.hdfgroup.org" ], "licenses": [], "maintainers": [ "lrknox" ], "name": "hdf", "patches": [ "disable_doclint.patch when @:4.2.14 ^java@9:", "https://src.fedoraproject.org/rpms/hdf/raw/edbe5f49646b609f5bc9aeeee5a2be47e9556e8c/f/hdf-ppc.patch?full_index=1 when @4.2.15:", "https://src.fedoraproject.org/rpms/hdf/raw/edbe5f49646b609f5bc9aeeee5a2be47e9556e8c/f/hdf-4.2.4-sparc.patch?full_index=1 when @4.2.15:", "https://src.fedoraproject.org/rpms/hdf/raw/edbe5f49646b609f5bc9aeeee5a2be47e9556e8c/f/hdf-s390.patch?full_index=1 when @4.2.15:", "https://src.fedoraproject.org/rpms/hdf/raw/edbe5f49646b609f5bc9aeeee5a2be47e9556e8c/f/hdf-arm.patch?full_index=1 when @4.2.15:", "https://src.fedoraproject.org/rpms/hdf/raw/edbe5f49646b609f5bc9aeeee5a2be47e9556e8c/f/hdf-aarch64.patch?full_index=1 when @4.2.15:", "hdfi_h_apple_m1.patch when @4.2.15: platform=darwin target=aarch64:" ], "summary": "HDF4 (also known as HDF) is a library and multi-object file format for\nstoring and managing data between machines.\n", "version": [ { "downloads": [ "https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.11/src/hdf-4.2.11.tar.gz" ], "version": "4.2.11" }, { "downloads": [ "https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.12/src/hdf-4.2.12.tar.gz" ], "version": "4.2.12" }, { "downloads": [ "https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.13/src/hdf-4.2.13.tar.gz" ], "version": "4.2.13" }, { "downloads": [ "https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.14/src/hdf-4.2.14.tar.gz" ], "version": "4.2.14" }, { "downloads": [ "https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.15/src/hdf-4.2.15.tar.gz" ], "version": "4.2.15" } ] }, "hdf-eos2": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "hdf", "jpeg", "szip", "zlib-api" ], "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/hdf-eos2-3.0-src.tar.gz" ], "homepages": [ "https://hdfeos.org" ], "licenses": [], "maintainers": [ "climbfuji" ], "name": "hdf-eos2", "patches": [ "hdf-eos2.configure.patch when @2:3.0", "hdf-eos2.nondarwin-no-single_module.patch when @2" ], "summary": "HDF-EOS (Hierarchical Data Format - Earth Observing System) is a self-\ndescribing file format based upon HDF for standard data products that\nare derived from EOS missions. HDF-EOS2 is based upon HDF4.\n", "version": [ { "downloads": [ "https://git.earthdata.nasa.gov/rest/git-lfs/storage/DAS/hdfeos/a69993508dbf5fa6120bac3c906ab26f1ad277348dfc2c891305023cfdf5dc9d?response-content-disposition=attachment%3B%20filename%3D%22hdfeos2_19b.zip%22%3B%20filename*%3Dutf-8%27%27hdfeos2_19b.zip" ], "version": "2.19b" }, { "downloads": [ "https://git.earthdata.nasa.gov/rest/git-lfs/storage/DAS/hdfeos/cb0f900d2732ab01e51284d6c9e90d0e852d61bba9bce3b43af0430ab5414903?response-content-disposition=attachment%3B%20filename%3D%22HDF-EOS2.20v1.00.tar.Z%22%3B%20filename*%3Dutf-8%27%27HDF-EOS2.20v1.00.tar.Z" ], "version": "2.20v1.00" }, { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/hdf-eos2-3.0-src.tar.gz" ], "version": "3.0" } ] }, "hdf-eos5": { "alias": [], "categories": [], "dependencies": [ "gmake", "gnuconfig", "hdf5" ], "downloads": [ "https://git.earthdata.nasa.gov/rest/git-lfs/storage/DAS/hdfeos5/{0}?response-content-disposition=attachment%3B%20filename%3D%22{1}%22%3B%20filename*%3Dutf-8%27%27{1}" ], "homepages": [ "https://hdfeos.org" ], "licenses": [], "maintainers": [ "payerle" ], "name": "hdf-eos5", "patches": [ "hdf-eos5.nondarwin-no-single_module.patch" ], "summary": "HDF-EOS (Hierarchical Data Format - Earth Observing System) is a self-\ndescribing file format based upon HDF for standard data products that\nare derived from EOS missions. HDF-EOS5 is based upon HDF5.\n", "version": [ { "downloads": [ "https://git.earthdata.nasa.gov/rest/git-lfs/storage/DAS/hdfeos5/fbf4d085f9bf6ffad259aee1e9f60cf060e7e99c447894ad8955df02de83c92c?response-content-disposition=attachment%3B%20filename%3D%22hdfeos5_1_15.zip%22%3B%20filename*%3Dutf-8%27%27hdfeos5_1_15.zip" ], "version": "5.1.15" }, { "downloads": [ "https://git.earthdata.nasa.gov/rest/git-lfs/storage/DAS/hdfeos5/7054de24b90b6d9533329ef8dc89912c5227c83fb447792103279364e13dd452?response-content-disposition=attachment%3B%20filename%3D%22HDF-EOS5.1.16.tar.Z%22%3B%20filename*%3Dutf-8%27%27HDF-EOS5.1.16.tar.Z" ], "version": "5.1.16" } ] }, "hdf5": { "alias": [], "categories": [ "e4s", "windows", "detectable" ], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "java", "mpi", "mpich", "ninja", "pkgconfig", "szip", "zlib-api", "zlib-ng" ], "downloads": [ "https://support.hdfgroup.org/releases/hdf5/v1_14/v1_14_5/downloads/hdf5-1.14.5.tar.gz", "https://support.hdfgroup.org/releases/hdf5/v1_14/v1_14_6/downloads/hdf5-1.14.6.tar.gz", "https://support.hdfgroup.org/releases/hdf5/v1_14/v1_14_5/downloads/hdf5-1.14.5.tar.gz", "https://support.hdfgroup.org/releases/hdf5/v1_14/v1_14_4/downloads/hdf5-1.14.4-3.tar.gz", "https://support.hdfgroup.org/releases/hdf5/v1_14/v1_14_3/downloads/hdf5-1.14.3.tar.gz", "https://support.hdfgroup.org/releases/hdf5/v1_14/v1_14_2/downloads/hdf5-1.14.2.tar.gz", "https://support.hdfgroup.org/releases/hdf5/v1_14/v1_14_1/downloads/hdf5-1.14.1-2.tar.gz", "https://support.hdfgroup.org/releases/hdf5/v1_14/v1_14_0/downloads/hdf5-1.14.0.tar.gz", "https://github.com/HDFGroup/hdf5.git" ], "homepages": [ "https://support.hdfgroup.org" ], "licenses": [ "custom" ], "maintainers": [ "brtnfld", "byrnHDF", "gheber", "hyoklee", "lkurz", "lrknox" ], "name": "hdf5", "patches": [ "find_package_zlib.patch when @1.8.16:1.14.4", "hdf5_1_14_3_fpe.patch when @1.14.3", "h5f90global-mult-obj-same-equivalence-same-common-block.patch when @1.10.1 %intel@18", "pre-c99-comments.patch when @1.8.10", "https://salsa.debian.org/debian-gis-team/hdf5/raw/bf94804af5f80f662cad80a5527535b3c6537df6/debian/patches/gcc-8.patch when @1.10.2 %gcc@8:", "h5public-skip-mpicxx.patch when @1.8.10:1.8.21,1.10.0:1.10.5~cxx+mpi", "hdf5_1.8_gcc10.patch when @:1.8.21", "fortran-kinds.patch when @1.10.7", "fortran-kinds-2.patch when @1.10.8,1.12.1", "hdf5_1_14_0_config_find_mpi.patch when @1.14.0" ], "summary": "HDF5 is a data model, library, and file format for storing and managing\ndata. 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"https://support.hdfgroup.org/archive/support/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.23/src/hdf5-1.8.23.tar.gz" ], "version": "1.8.23" }, { "branch": "develop-1.10", "repositories": [ { "branch": "develop-1.10", "type": "git", "url": "https://github.com/HDFGroup/hdf5.git" } ], "version": "develop-1.10" }, { "branch": "develop-1.12", "repositories": [ { "branch": "develop-1.12", "type": "git", "url": "https://github.com/HDFGroup/hdf5.git" } ], "version": "develop-1.12" }, { "branch": "develop-1.14", "repositories": [ { "branch": "develop-1.14", "type": "git", "url": "https://github.com/HDFGroup/hdf5.git" } ], "version": "develop-1.14" }, { "branch": "develop-1.8", "repositories": [ { "branch": "develop-1.8", "type": "git", "url": "https://github.com/HDFGroup/hdf5.git" } ], "version": "develop-1.8" }, { "branch": "develop-2.0", "repositories": [ { "branch": "develop-2.0", "type": "git", "url": "https://github.com/HDFGroup/hdf5.git" } ], "version": "develop-2.0" } ] }, "hdf5-blosc": { "alias": [], "categories": [], "dependencies": [ "c", "c-blosc", "hdf5", "libtool" ], "downloads": [ "https://github.com/Blosc/hdf5-blosc.git" ], "homepages": [ "https://github.com/Blosc/hdf5-blosc" ], "licenses": [ "MIT" ], "maintainers": [], "name": "hdf5-blosc", "patches": [], "summary": "Blosc filter for HDF5\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/Blosc/hdf5-blosc.git" } ], "version": "master" } ] }, "hdf5-vfd-gds": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cuda", "gmake", "hdf5", "ninja" ], "downloads": [ "https://github.com/hpc-io/vfd-gds/archive/refs/tags/master.tar.gz", "https://github.com/hpc-io/vfd-gds/archive/refs/tags/1.0.2.tar.gz", "https://github.com/hpc-io/vfd-gds/archive/refs/tags/1.0.1.tar.gz", "https://github.com/hpc-io/vfd-gds/archive/refs/tags/1.0.0.tar.gz", "https://github.com/hpc-io/vfd-gds.git" ], "homepages": [ "https://github.com/hpc-io/vfd-gds" ], "licenses": [ "BSD-3-Clause-LBNL" ], "maintainers": [ "hyoklee", "lrknox" ], "name": "hdf5-vfd-gds", "patches": [], "summary": "This package enables GPU Direct Storage Virtual File Driver in HDF5.\n", "version": [ { "downloads": [ "https://github.com/hpc-io/vfd-gds/archive/refs/tags/1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://github.com/hpc-io/vfd-gds/archive/refs/tags/1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://github.com/hpc-io/vfd-gds/archive/refs/tags/1.0.2.tar.gz" ], "version": "1.0.2" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/hpc-io/vfd-gds.git" } ], "version": "master" } ] }, "hdf5-vol-async": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "argobots", "c", "cmake", "gmake", "hdf5", "mpi", "mvapich2", "ninja", "openmpi" ], "downloads": [ "https://github.com/hpc-io/vol-async.git" ], "homepages": [ "https://hdf5-vol-async.readthedocs.io" ], "licenses": [ "BSD-3-Clause-LBNL" ], "maintainers": [ "houjun", "hyoklee", "jeanbez" ], "name": "hdf5-vol-async", "patches": [], "summary": "This package enables asynchronous IO in HDF5. Usage: Set the\nHDF5_VOL_CONNECTOR environment variable to enable this adaptor, i.e.\n$export HDF5_VOL_CONNECTOR=\"async under_vol=0;under_info={}\" ref.\nhttps://hdf5-vol-async.readthedocs.io/en/latest/gettingstarted.html#set-\nenvironmental-variables\n", "version": [ { "repositories": [ { "commit": "b917713ffcb207d9799c6d6863cf805ee54ccfea", "type": "git", "url": "https://github.com/hpc-io/vol-async.git" } ], "version": "1.5" }, { "repositories": [ { "commit": "f3406d62ec055cdcfe077979a1068bd102c598a5", "type": "git", "url": "https://github.com/hpc-io/vol-async.git" } ], "version": "1.6" }, { "repositories": [ { "commit": "70a22cf9863a7c1386d97be865342deb751ca501", "type": "git", "url": "https://github.com/hpc-io/vol-async.git" } ], "version": "1.7" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/hpc-io/vol-async.git" } ], "version": "develop" } ] }, "hdf5-vol-cache": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "c", "cmake", "cxx", "gmake", "hdf5", "hdf5-vol-async", "ninja" ], "downloads": [ "https://github.com/hpc-io/vol-cache.git" ], "homepages": [ "https://vol-cache.readthedocs.io" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "hyoklee", "lrknox" ], "name": "hdf5-vol-cache", "patches": [], "summary": "Package for HDF5 cache VOL.\n", "version": [ { "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/hpc-io/vol-cache.git" } ], "version": "default" }, { "repositories": [ { "commit": "a9b9704e74fa24af50b2a3bd0d63a40a69bde8fe", "type": "git", "url": "https://github.com/hpc-io/vol-cache.git" } ], "version": "v1.0" }, { "repositories": [ { "commit": "d886a17a381990b5949d95f5299461c39d7ac2bc", "type": "git", "url": "https://github.com/hpc-io/vol-cache.git" } ], "version": "v1.1" } ] }, "hdf5-vol-daos": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "c", "cmake", "cxx", "daos", "gmake", "hdf5", "ninja" ], "downloads": [ "https://github.com/HDFGroup/vol-daos/releases/download/vmaster/hdf5_vol_daos-master.tar.bz2", "https://github.com/HDFGroup/vol-daos/releases/download/v1.2.0/hdf5_vol_daos-1.2.0.tar.bz2", "https://github.com/HDFGroup/vol-daos.git" ], "homepages": [ "https://github.com/HDFGroup/vol-daos" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "hyoklee", "soumagne" ], "name": "hdf5-vol-daos", "patches": [], "summary": "The HDF5 DAOS VOL connector is an external VOL connector that interfaces\nwith the DAOS API\n", "version": [ { "downloads": [ "https://github.com/HDFGroup/vol-daos/releases/download/v1.2.0/hdf5_vol_daos-1.2.0.tar.bz2" ], "version": "1.2.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/HDFGroup/vol-daos.git" } ], "version": "master" } ] }, "hdf5-vol-external-passthrough": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "gmake", "hdf5", "ninja" ], "downloads": [ "https://github.com/hpc-io/vol-external-passthrough/archive/refs/tags/vdevelop.tar.gz", "https://github.com/hpc-io/vol-external-passthrough/archive/refs/tags/v1.1.tar.gz", "https://github.com/hpc-io/vol-external-passthrough.git" ], "homepages": [ "https://sdm.lbl.gov/" ], "licenses": [], "maintainers": [ "hyoklee" ], "name": "hdf5-vol-external-passthrough", "patches": [], "summary": "Package for HDF5 external pass-through VOL.\n", "version": [ { "downloads": [ "https://github.com/hpc-io/vol-external-passthrough/archive/refs/tags/v1.1.tar.gz" ], "version": "1.1" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/hpc-io/vol-external-passthrough.git" } ], "version": "develop" } ] }, "hdf5-vol-log": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "autoconf", "automake", "c", "cxx", "gmake", "gnuconfig", "hdf5", "libtool", "m4", "mpi" ], "downloads": [ "https://github.com/DataLib-ECP/vol-log-based", "https://github.com/DataLib-ECP/vol-log-based", "https://github.com/DataLib-ECP/vol-log-based.git" ], "homepages": [ "https://github.com/DataLib-ECP/vol-log-based" ], "licenses": [], "maintainers": [ "hyoklee", "lrknox" ], "name": "hdf5-vol-log", "patches": [], "summary": "Log-based VOL - an HDF5 VOL Plugin that stores HDF5 datasets in a log-\nbased storage layout.\n", "version": [ { "repositories": [ { "commit": "786d2cc4da8b4a0827ee00b1b0ab3968ef942f99", "type": "git", "url": "https://github.com/DataLib-ECP/vol-log-based.git" } ], "version": "1.4.0" }, { "branch": "master-1.1", "repositories": [ { "branch": "master-1.1", "type": "git", "url": "https://github.com/DataLib-ECP/vol-log-based.git" } ], "version": "master-1.1" } ] }, "hdfview": { "alias": [], "categories": [], "dependencies": [ "ant", "hdf", "hdf5", "java" ], "downloads": [ "https://github.com/HDFGroup/hdfview/releases/download/v3.3.2/HDFView-3.3.2.tar.gz", "https://s3.amazonaws.com/hdf-wordpress-1/wp-content/uploads/manual/HDFView/hdfview-3.0.tar.gz" ], "homepages": [ "https://www.hdfgroup.org/downloads/hdfview/" ], "licenses": [], "maintainers": [], "name": "hdfview", "patches": [ "fix_build.patch when @3.1.1" ], "summary": "HDFView is a visual tool written in Java for browsing and editing HDF\n(HDF5 and HDF4) files.\n", "version": [ { "downloads": [ "https://support.hdfgroup.org/ftp/HDF5/releases/HDF-JAVA/hdfview-3.0/src/hdfview-3.0.tar.gz" ], "version": "3.0" }, { "downloads": [ "https://support.hdfgroup.org/ftp/HDF5/releases/HDF-JAVA/hdfview-3.1.1/src/hdfview-3.1.1.tar.gz" ], "version": "3.1.1" }, { "downloads": [ "https://support.hdfgroup.org/ftp/HDF5/releases/HDF-JAVA/hdfview-3.1.4/src/hdfview-3.1.4.tar.gz" ], "version": "3.1.4" }, { "downloads": [ "https://support.hdfgroup.org/ftp/HDF5/releases/HDF-JAVA/hdfview-3.2.0/src/hdfview-3.2.0.tar.gz" ], "version": "3.2.0" }, { "downloads": [ "https://support.hdfgroup.org/ftp/HDF5/releases/HDF-JAVA/hdfview-3.3.0/src/hdfview-3.3.0.tar.gz" ], "version": "3.3.0" }, { "downloads": [ "https://github.com/HDFGroup/hdfview/releases/download/v3.3.2/HDFView-3.3.2.tar.gz" ], "version": "3.3.2" } ] }, "healpix-cxx": { "alias": [], "categories": [], "dependencies": [ "cfitsio", "gmake", "gnuconfig", "libsharp" ], "downloads": [ "https://ayera.dl.sourceforge.net/project/healpix/Healpix_3.50/healpix_cxx-3.50.0.tar.gz" ], "homepages": [ "https://healpix.sourceforge.io" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "healpix-cxx", "patches": [], "summary": "Healpix-CXX is a C/C++ library for calculating Hierarchical Equal Area\nisoLatitude Pixelation of a sphere.\n", "version": [ { "downloads": [ "https://ayera.dl.sourceforge.net/project/healpix/Healpix_3.50/healpix_cxx-3.50.0.tar.gz" ], "version": "3.50.0" } ] }, "heaptrack": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "cmake", "cxx", "elfutils", "gmake", "libunwind", "ninja", "zlib-api", "zstd" ], "downloads": [ "https://github.com/KDE/heaptrack/archive/v1.3.0.tar.gz", "https://github.com/KDE/heaptrack/archive/v1.1.0.tar.gz" ], "homepages": [ "https://github.com/KDE/heaptrack" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "heaptrack", "patches": [], "summary": "Heaptrack is a heap memory profiler that traces all memory allocations\nand annotates these events with stack traces.\n", "version": [ { "downloads": [ "https://github.com/KDE/heaptrack/archive/v1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://github.com/KDE/heaptrack/archive/v1.3.0.tar.gz" ], "version": "1.3.0" } ] }, "heasoft": { "alias": [], "categories": [], "dependencies": [ "c", "curl", "cxx", "fortran", "gmake", "gnuconfig", "libpng", "libx11", "libxt", "ncurses", "perl-extutils-makemaker", "py-numpy", "python", "python-venv", "readline", "zlib-api" ], "downloads": [ "https://heasarc.gsfc.nasa.gov/FTP/software/lheasoft/lheasoft6.30/heasoft-6.30src.tar.gz", "https://heasarc.gsfc.nasa.gov/FTP/software/lheasoft/lheasoft6.29/heasoft-6.29src.tar.gz" ], "homepages": [ "https://heasarc.gsfc.nasa.gov/docs/software/lheasoft/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "heasoft", "patches": [ "setup.patch", "heasoft-6.29_tcltk-configure.patch when @6.29", "heasoft-6.29_xspec-12.12.0a.patch when @6.29", "heasoft-6.29_xspec-12.12.0b.patch when @6.29", "heasoft-6.29_xspec-12.12.0c.patch when @6.29", "heasoft-6.29_xspec-12.12.0d.patch when @6.29", "heasoft-6.29_xspec-12.12.0e.patch when @6.29", "heasoft-6.29_xspec-12.12.0f.patch when @6.29", "heasoft-6.29_xspec-12.12.0g.patch when @6.29", "heasoft-6.29_xspec-12.12.0ver.patch when @6.29", "heasoft-6.30_tcltk-configure.patch when @6.30" ], "summary": "A Unified Release of the FTOOLS and XANADU Software Packages. XANADU:\nHigh-level, multi-mission tasks for X-ray astronomical spectral, timing,\nand imaging data analysis. FTOOLS: General and mission-specific tools to\nmanipulate FITS files. FITSIO: Core library responsible for reading and\nwriting FITS files. fv: General FITS file browser/editor/plotter with a\ngraphical user interface. XSTAR: Tool for calculating the physical\nconditions and emission spectra of photoionized gases\n", "version": [ { "downloads": [ "https://heasarc.gsfc.nasa.gov/FTP/software/lheasoft/lheasoft6.29/heasoft-6.29src.tar.gz" ], "version": "6.29" }, { "downloads": [ "https://heasarc.gsfc.nasa.gov/FTP/software/lheasoft/lheasoft6.30/heasoft-6.30src.tar.gz" ], "version": "6.30" } ] }, "heffte": { "alias": [], "categories": [ "e4s", "ecp" ], "dependencies": [ "c", "cmake", "cuda", "cxx", "fftw", "fortran", "gmake", "hip", "hipblas", "hipsparse", "hsa-rocr-dev", "intel-oneapi-mkl", "intel-oneapi-mpi", "llvm-amdgpu", "magma", "mpi", "ninja", "py-mpi4py", "py-numba", "py-numpy", "python", "python-venv", "rocblas", "rocfft", "rocsparse" ], "downloads": [ "https://github.com/icl-utk-edu/heffte/archive/refs/tags/vdevelop.tar.gz", "https://github.com/icl-utk-edu/heffte/archive/refs/tags/v2.4.1.tar.gz", "https://github.com/icl-utk-edu/heffte/archive/refs/tags/v2.4.0.tar.gz", "https://github.com/icl-utk-edu/heffte/archive/refs/tags/v2.3.0.tar.gz", "https://github.com/icl-utk-edu/heffte/archive/refs/tags/v2.2.0.tar.gz", "https://github.com/icl-utk-edu/heffte/archive/refs/tags/v2.1.0.tar.gz", "https://github.com/icl-utk-edu/heffte/" ], "homepages": [ "https://github.com/icl-utk-edu/heffte/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "G-Ragghianti", "mkstoyanov" ], "name": "heffte", "patches": [ "cmake-magma-v230.patch when @2.3.0" ], "summary": "Highly Efficient FFT for Exascale\n", "version": [ { "downloads": [ "https://github.com/icl-utk-edu/heffte/archive/refs/tags/v2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://github.com/icl-utk-edu/heffte/archive/refs/tags/v2.2.0.tar.gz" ], "version": "2.2.0" }, { "downloads": [ "https://github.com/icl-utk-edu/heffte/archive/refs/tags/v2.3.0.tar.gz" ], "version": "2.3.0" }, { "downloads": [ "https://github.com/icl-utk-edu/heffte/archive/refs/tags/v2.4.0.tar.gz" ], "version": "2.4.0" }, { "downloads": [ "https://github.com/icl-utk-edu/heffte/archive/refs/tags/v2.4.1.tar.gz" ], "version": "2.4.1" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/icl-utk-edu/heffte/" } ], "version": "develop" } ] }, "heimdall": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "cuda", "cxx", "dedisp", "gmake", "gnuconfig", "libtool", "psrdada" ], "downloads": [ "https://git.code.sf.net/p/heimdall-astro/code" ], "homepages": [ "https://sourceforge.net/projects/heimdall-astro/" ], "licenses": [], "maintainers": [ "aweaver1fandm" ], "name": "heimdall", "patches": [], "summary": "GPU accelerated transient detection pipeline\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://git.code.sf.net/p/heimdall-astro/code" } ], "version": "master" } ] }, "helib": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "gmp", "ninja", "ntl" ], "downloads": [ "https://github.com/homenc/HElib/archive/refs/tags/v2.2.2.tar.gz", "https://github.com/homenc/HElib/archive/refs/tags/v2.2.1.tar.gz", "https://github.com/homenc/HElib/archive/refs/tags/v2.2.0.tar.gz", "https://github.com/homenc/HElib/archive/refs/tags/v2.1.0.tar.gz", "https://github.com/homenc/HElib/archive/refs/tags/v2.0.0.tar.gz", "https://github.com/homenc/HElib/archive/refs/tags/v1.3.1.tar.gz", "https://github.com/homenc/HElib/archive/refs/tags/v1.3.0.tar.gz", "https://github.com/homenc/HElib/archive/refs/tags/v1.2.0.tar.gz", "https://github.com/homenc/HElib/archive/refs/tags/v1.1.0.tar.gz", "https://github.com/homenc/HElib/archive/refs/tags/v1.1.0-beta.0.tar.gz", "https://github.com/homenc/HElib/archive/refs/tags/v1.0.2.tar.gz" ], "homepages": [ "https://github.com/homenc/HElib" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wohlbier" ], "name": "helib", "patches": [], "summary": "HElib is an open-source (Apache License v2.0) software library that\nimplements homomorphic encryption (HE). Currently available schemes are\nthe implementations of the Brakerski-Gentry-Vaikuntanathan (BGV) scheme\nwith bootstrapping and the Approximate Number scheme of Cheon-Kim-Kim-\nSong (CKKS), along with many optimizations to make homomorphic\nevaluation run faster, focusing mostly on effective use of the Smart-\nVercauteren ciphertext packing techniques and the Gentry-Halevi-Smart\noptimizations.\n", "version": [ { "downloads": [ "https://github.com/homenc/HElib/archive/refs/tags/v1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://github.com/homenc/HElib/archive/refs/tags/v1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://github.com/homenc/HElib/archive/refs/tags/v1.1.0-beta.0.tar.gz" ], "version": "1.1.0-beta.0" }, { "downloads": [ "https://github.com/homenc/HElib/archive/refs/tags/v1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://github.com/homenc/HElib/archive/refs/tags/v1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ 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} ], "version": "develop" } ] }, "hipblas": { "alias": [], "categories": [ "rocm", "detectable" ], "dependencies": [ "boost", "c", "cmake", "cuda", "cxx", "fortran", "gmake", "googletest", "hip", "hipblas-common", "hsa-rocr-dev", "llvm-amdgpu", "netlib-lapack", "ninja", "py-pyaml", "rocblas", "rocm-cmake", "rocm-openmp-extras", "rocsolver" ], "downloads": [ "https://github.com/ROCm/hipBLAS/archive/rocm-7.0.2.tar.gz", "https://github.com/ROCm/hipBLAS/archive/rocm-7.0.0.tar.gz", "https://github.com/ROCm/hipBLAS/archive/rocm-6.4.3.tar.gz", "https://github.com/ROCm/hipBLAS/archive/rocm-6.4.2.tar.gz", "https://github.com/ROCm/hipBLAS/archive/rocm-6.4.1.tar.gz", "https://github.com/ROCm/hipBLAS/archive/rocm-6.4.0.tar.gz", "https://github.com/ROCm/hipBLAS/archive/rocm-6.3.3.tar.gz", "https://github.com/ROCm/hipBLAS/archive/rocm-6.3.2.tar.gz", "https://github.com/ROCm/hipBLAS/archive/rocm-6.3.1.tar.gz", "https://github.com/ROCm/hipBLAS/archive/rocm-6.3.0.tar.gz", 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"modify-hipblas-common-dependency.patch when @6.3:6" ], "summary": "hipBLAS is a BLAS marshalling library, with multiple supported backends\n", "version": [ { "downloads": [ "https://github.com/ROCm/hipBLAS/archive/rocm-5.7.0.tar.gz" ], "version": "5.7.0" }, { "downloads": [ "https://github.com/ROCm/hipBLAS/archive/rocm-5.7.1.tar.gz" ], "version": "5.7.1" }, { "downloads": [ "https://github.com/ROCm/hipBLAS/archive/rocm-6.0.0.tar.gz" ], "version": "6.0.0" }, { "downloads": [ "https://github.com/ROCm/hipBLAS/archive/rocm-6.0.2.tar.gz" ], "version": "6.0.2" }, { "downloads": [ "https://github.com/ROCm/hipBLAS/archive/rocm-6.1.0.tar.gz" ], "version": "6.1.0" }, { "downloads": [ "https://github.com/ROCm/hipBLAS/archive/rocm-6.1.1.tar.gz" ], "version": "6.1.1" }, { "downloads": [ "https://github.com/ROCm/hipBLAS/archive/rocm-6.1.2.tar.gz" ], "version": "6.1.2" }, { "downloads": [ "https://github.com/ROCm/hipBLAS/archive/rocm-6.2.0.tar.gz" ], "version": "6.2.0" }, { "downloads": [ 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"version": "6.4.0" }, { "downloads": [ "https://github.com/ROCm/hipBLAS-common/archive/refs/tags/rocm-6.4.1.tar.gz" ], "version": "6.4.1" }, { "downloads": [ "https://github.com/ROCm/hipBLAS-common/archive/refs/tags/rocm-6.4.2.tar.gz" ], "version": "6.4.2" }, { "downloads": [ "https://github.com/ROCm/hipBLAS-common/archive/refs/tags/rocm-6.4.3.tar.gz" ], "version": "6.4.3" }, { "downloads": [ "https://github.com/ROCm/hipBLAS-common/archive/refs/tags/rocm-7.0.0.tar.gz" ], "version": "7.0.0" }, { "downloads": [ "https://github.com/ROCm/hipBLAS-common/archive/refs/tags/rocm-7.0.2.tar.gz" ], "version": "7.0.2" } ] }, "hipblaslt": { "alias": [], "categories": [ "rocm", "detectable" ], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "googletest", "hip", "hipblas", "hipblas-common", "llvm-amdgpu", "msgpack-c", "netlib-lapack", "ninja", "py-joblib", "py-pyyaml", "python", "python-venv", "rocm-openmp-extras", "rocm-smi-lib", "roctracer-dev" ], "downloads": [ 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"https://github.com/ROCm/hipBLASLt/archive/refs/tags/rocm-6.1.2.tar.gz", "https://github.com/ROCm/hipBLASLt/archive/refs/tags/rocm-6.1.1.tar.gz", "https://github.com/ROCm/hipBLASLt/archive/refs/tags/rocm-6.1.0.tar.gz", "https://github.com/ROCm/hipBLASLt/archive/refs/tags/rocm-6.0.2.tar.gz", "https://github.com/ROCm/hipBLASLt/archive/refs/tags/rocm-6.0.0.tar.gz", "https://github.com/ROCm/hipBLASLt.git" ], "homepages": [ "https://github.com/ROCm/hipBLASLt" ], "licenses": [ "MIT" ], "maintainers": [ "afzpatel", "renjithravindrankannath", "srekolam" ], "name": "hipblaslt", "patches": [ "001_Set_LLVM_Paths_And_Add_Includes.patch when @6.0", "0001-Set-LLVM_Path-Add-Hiblas-Include-to-CmakeLists-6.1.Patch when @6.1:6.2", "0001-Set-LLVM-Path-6.3.Patch when @6.3", "002-link-roctracer.patch when @6.4", "002-link-roctracer.7.0.patch when @7.0", "0004-Set-rocm-smi-ld-path-7.0.patch when @7.0", "003-use-rocm-smi-config.patch when @6.4:" ], "summary": "hipBLASLt is a library that provides general matrix-matrix operations\nwith a flexible API and extends functionalities beyond a traditional\nBLAS library\n", "version": [ { "downloads": [ "https://github.com/ROCm/hipBLASLt/archive/refs/tags/rocm-6.0.0.tar.gz" ], "version": "6.0.0" }, { "downloads": [ "https://github.com/ROCm/hipBLASLt/archive/refs/tags/rocm-6.0.2.tar.gz" ], "version": "6.0.2" }, { "downloads": [ "https://github.com/ROCm/hipBLASLt/archive/refs/tags/rocm-6.1.0.tar.gz" ], "version": "6.1.0" }, { "downloads": [ "https://github.com/ROCm/hipBLASLt/archive/refs/tags/rocm-6.1.1.tar.gz" ], "version": "6.1.1" }, { "downloads": [ "https://github.com/ROCm/hipBLASLt/archive/refs/tags/rocm-6.1.2.tar.gz" ], "version": "6.1.2" }, { "downloads": [ "https://github.com/ROCm/hipBLASLt/archive/refs/tags/rocm-6.2.0.tar.gz" ], "version": "6.2.0" }, { "downloads": [ "https://github.com/ROCm/hipBLASLt/archive/refs/tags/rocm-6.2.1.tar.gz" ], "version": "6.2.1" }, { "downloads": [ 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Currently, hipFFT supports either\nrocFFT or cuFFT as backends.hipFFT exports an interface that does not\nrequire the client to change, regardless of the chosen backend. 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} ] }, "hipify-clang": { "alias": [], "categories": [ "rocm", "detectable" ], "dependencies": [ "c", "cmake", "cxx", "gmake", "llvm-amdgpu", "ninja", "rocm-core" ], "downloads": [ "https://github.com/ROCm/HIPIFY/archive/rocm-7.0.2.tar.gz", "https://github.com/ROCm/HIPIFY/archive/rocm-7.0.0.tar.gz", "https://github.com/ROCm/HIPIFY/archive/rocm-6.4.3.tar.gz", "https://github.com/ROCm/HIPIFY/archive/rocm-6.4.2.tar.gz", "https://github.com/ROCm/HIPIFY/archive/rocm-6.4.1.tar.gz", "https://github.com/ROCm/HIPIFY/archive/rocm-6.4.0.tar.gz", "https://github.com/ROCm/HIPIFY/archive/rocm-6.3.3.tar.gz", "https://github.com/ROCm/HIPIFY/archive/rocm-6.3.2.tar.gz", "https://github.com/ROCm/HIPIFY/archive/rocm-6.3.1.tar.gz", "https://github.com/ROCm/HIPIFY/archive/rocm-6.3.0.tar.gz", "https://github.com/ROCm/HIPIFY/archive/rocm-6.2.4.tar.gz", "https://github.com/ROCm/HIPIFY/archive/rocm-6.2.1.tar.gz", "https://github.com/ROCm/HIPIFY/archive/rocm-6.2.0.tar.gz", "https://github.com/ROCm/HIPIFY/archive/rocm-6.1.2.tar.gz", "https://github.com/ROCm/HIPIFY/archive/rocm-6.1.1.tar.gz", "https://github.com/ROCm/HIPIFY/archive/rocm-6.1.0.tar.gz", "https://github.com/ROCm/HIPIFY/archive/rocm-6.0.2.tar.gz", "https://github.com/ROCm/HIPIFY/archive/rocm-6.0.0.tar.gz", "https://github.com/ROCm/HIPIFY/archive/rocm-5.7.1.tar.gz", "https://github.com/ROCm/HIPIFY/archive/rocm-5.7.0.tar.gz", "https://github.com/ROCm/HIPIFY.git" ], "homepages": [ "https://github.com/ROCm/HIPIFY" ], "licenses": [ "MIT" ], "maintainers": [ "afzpatel", "renjithravindrankannath", "srekolam" ], "name": "hipify-clang", "patches": [ "0002-install-hipify-clang-in-bin-dir-and-llvm-clangs-head.patch when @:6.0", "0003-install-hipify-clang-in-bin-dir-and-llvm-clangs-head.patch when @6.1", "0001-use-source-permission-for-hipify-perl.patch when @6.2:6" ], "summary": "hipify-clang is a clang-based tool for translation CUDA sources into HIP\nsources\n", "version": [ { "downloads": [ "https://github.com/ROCm/HIPIFY/archive/rocm-5.7.0.tar.gz" ], "version": "5.7.0" }, { "downloads": [ "https://github.com/ROCm/HIPIFY/archive/rocm-5.7.1.tar.gz" ], "version": "5.7.1" }, { "downloads": [ "https://github.com/ROCm/HIPIFY/archive/rocm-6.0.0.tar.gz" ], "version": "6.0.0" }, { "downloads": [ "https://github.com/ROCm/HIPIFY/archive/rocm-6.0.2.tar.gz" ], "version": "6.0.2" }, { "downloads": [ "https://github.com/ROCm/HIPIFY/archive/rocm-6.1.0.tar.gz" ], "version": "6.1.0" }, { "downloads": [ "https://github.com/ROCm/HIPIFY/archive/rocm-6.1.1.tar.gz" ], "version": "6.1.1" }, { "downloads": [ "https://github.com/ROCm/HIPIFY/archive/rocm-6.1.2.tar.gz" ], "version": "6.1.2" }, { "downloads": [ "https://github.com/ROCm/HIPIFY/archive/rocm-6.2.0.tar.gz" ], "version": "6.2.0" }, { "downloads": [ "https://github.com/ROCm/HIPIFY/archive/rocm-6.2.1.tar.gz" ], "version": "6.2.1" }, { "downloads": [ "https://github.com/ROCm/HIPIFY/archive/rocm-6.2.4.tar.gz" ], "version": "6.2.4" }, { "downloads": [ "https://github.com/ROCm/HIPIFY/archive/rocm-6.3.0.tar.gz" ], "version": "6.3.0" }, { "downloads": [ "https://github.com/ROCm/HIPIFY/archive/rocm-6.3.1.tar.gz" ], "version": "6.3.1" }, { "downloads": [ "https://github.com/ROCm/HIPIFY/archive/rocm-6.3.2.tar.gz" ], "version": "6.3.2" }, { "downloads": [ "https://github.com/ROCm/HIPIFY/archive/rocm-6.3.3.tar.gz" ], "version": "6.3.3" }, { "downloads": [ "https://github.com/ROCm/HIPIFY/archive/rocm-6.4.0.tar.gz" ], "version": "6.4.0" }, { "downloads": [ "https://github.com/ROCm/HIPIFY/archive/rocm-6.4.1.tar.gz" ], "version": "6.4.1" }, { "downloads": [ "https://github.com/ROCm/HIPIFY/archive/rocm-6.4.2.tar.gz" ], "version": "6.4.2" }, { "downloads": [ "https://github.com/ROCm/HIPIFY/archive/rocm-6.4.3.tar.gz" ], "version": "6.4.3" }, { "downloads": [ "https://github.com/ROCm/HIPIFY/archive/rocm-7.0.0.tar.gz" ], "version": "7.0.0" }, { "downloads": [ "https://github.com/ROCm/HIPIFY/archive/rocm-7.0.2.tar.gz" ], "version": "7.0.2" } ] }, "hiprand": { "alias": [], "categories": [ "rocm", "detectable" ], "dependencies": [ "cmake", "cuda", "cxx", "fortran", "gmake", "googletest", "hip", "hsa-rocr-dev", "llvm-amdgpu", "ninja", "rocm-cmake", "rocrand" ], "downloads": [ "https://github.com/ROCm/hipRAND/archive/rocm-7.0.2.tar.gz", "https://github.com/ROCm/hipRAND/archive/rocm-7.0.0.tar.gz", "https://github.com/ROCm/hipRAND/archive/rocm-6.4.3.tar.gz", "https://github.com/ROCm/hipRAND/archive/rocm-6.4.2.tar.gz", "https://github.com/ROCm/hipRAND/archive/rocm-6.4.1.tar.gz", "https://github.com/ROCm/hipRAND/archive/rocm-6.4.0.tar.gz", "https://github.com/ROCm/hipRAND/archive/rocm-6.3.3.tar.gz", "https://github.com/ROCm/hipRAND/archive/rocm-6.3.2.tar.gz", "https://github.com/ROCm/hipRAND/archive/rocm-6.3.1.tar.gz", "https://github.com/ROCm/hipRAND/archive/rocm-6.3.0.tar.gz", "https://github.com/ROCm/hipRAND/archive/rocm-6.2.4.tar.gz", "https://github.com/ROCm/hipRAND/archive/rocm-6.2.1.tar.gz", "https://github.com/ROCm/hipRAND/archive/rocm-6.2.0.tar.gz", "https://github.com/ROCm/hipRAND/archive/rocm-6.1.2.tar.gz", "https://github.com/ROCm/hipRAND/archive/rocm-6.1.1.tar.gz", "https://github.com/ROCm/hipRAND/archive/rocm-6.1.0.tar.gz", "https://github.com/ROCm/hipRAND/archive/rocm-6.0.2.tar.gz", "https://github.com/ROCm/hipRAND/archive/rocm-6.0.0.tar.gz", "https://github.com/ROCm/hipRAND/archive/rocm-5.7.1.tar.gz", "https://github.com/ROCm/hipRAND/archive/rocm-5.7.0.tar.gz", "https://github.com/ROCm/hipRAND.git" ], "homepages": [ "https://github.com/ROCm/hipRAND" ], "licenses": [ "MIT" ], "maintainers": [ "afzpatel", "cgmb", "renjithravindrankannath", "srekolam" ], "name": "hiprand", "patches": [], "summary": "The hipRAND project provides an interface for generating pseudo-random\nand quasi-random numbers with either cuRAND or rocRAND backends.\n", "version": [ { "downloads": [ "https://github.com/ROCm/hipRAND/archive/rocm-5.7.0.tar.gz" ], "version": "5.7.0" }, { "downloads": [ "https://github.com/ROCm/hipRAND/archive/rocm-5.7.1.tar.gz" ], "version": "5.7.1" }, { "downloads": [ "https://github.com/ROCm/hipRAND/archive/rocm-6.0.0.tar.gz" ], "version": "6.0.0" }, { "downloads": [ "https://github.com/ROCm/hipRAND/archive/rocm-6.0.2.tar.gz" ], "version": "6.0.2" }, { "downloads": [ "https://github.com/ROCm/hipRAND/archive/rocm-6.1.0.tar.gz" ], "version": "6.1.0" }, { "downloads": [ "https://github.com/ROCm/hipRAND/archive/rocm-6.1.1.tar.gz" ], "version": "6.1.1" }, { "downloads": [ "https://github.com/ROCm/hipRAND/archive/rocm-6.1.2.tar.gz" ], "version": "6.1.2" }, { "downloads": [ "https://github.com/ROCm/hipRAND/archive/rocm-6.2.0.tar.gz" ], "version": "6.2.0" }, { "downloads": [ "https://github.com/ROCm/hipRAND/archive/rocm-6.2.1.tar.gz" ], "version": "6.2.1" }, { "downloads": [ "https://github.com/ROCm/hipRAND/archive/rocm-6.2.4.tar.gz" ], "version": "6.2.4" }, { "downloads": [ "https://github.com/ROCm/hipRAND/archive/rocm-6.3.0.tar.gz" ], "version": "6.3.0" }, { "downloads": [ "https://github.com/ROCm/hipRAND/archive/rocm-6.3.1.tar.gz" ], "version": "6.3.1" }, { "downloads": [ "https://github.com/ROCm/hipRAND/archive/rocm-6.3.2.tar.gz" ], "version": "6.3.2" }, { "downloads": [ "https://github.com/ROCm/hipRAND/archive/rocm-6.3.3.tar.gz" ], "version": "6.3.3" }, { "downloads": [ "https://github.com/ROCm/hipRAND/archive/rocm-6.4.0.tar.gz" ], "version": "6.4.0" }, { "downloads": [ "https://github.com/ROCm/hipRAND/archive/rocm-6.4.1.tar.gz" ], "version": "6.4.1" }, { "downloads": [ "https://github.com/ROCm/hipRAND/archive/rocm-6.4.2.tar.gz" ], "version": "6.4.2" }, { "downloads": [ "https://github.com/ROCm/hipRAND/archive/rocm-6.4.3.tar.gz" ], "version": "6.4.3" }, { "downloads": [ "https://github.com/ROCm/hipRAND/archive/rocm-7.0.0.tar.gz" ], "version": "7.0.0" }, { "downloads": [ "https://github.com/ROCm/hipRAND/archive/rocm-7.0.2.tar.gz" ], "version": "7.0.2" } ] }, "hipsolver": { "alias": [], "categories": [ "rocm", "detectable" ], "dependencies": [ "c", "cmake", "cuda", "cxx", "fortran", "gmake", "googletest", "hip", "hsa-rocr-dev", "llvm-amdgpu", "netlib-lapack", "ninja", "rocblas", "rocm-cmake", "rocsolver", "suite-sparse" ], "downloads": [ "https://github.com/ROCm/hipSOLVER/archive/rocm-7.0.2.tar.gz", "https://github.com/ROCm/hipSOLVER/archive/rocm-7.0.0.tar.gz", "https://github.com/ROCm/hipSOLVER/archive/rocm-6.4.3.tar.gz", "https://github.com/ROCm/hipSOLVER/archive/rocm-6.4.2.tar.gz", "https://github.com/ROCm/hipSOLVER/archive/rocm-6.4.1.tar.gz", "https://github.com/ROCm/hipSOLVER/archive/rocm-6.4.0.tar.gz", "https://github.com/ROCm/hipSOLVER/archive/rocm-6.3.3.tar.gz", "https://github.com/ROCm/hipSOLVER/archive/rocm-6.3.2.tar.gz", "https://github.com/ROCm/hipSOLVER/archive/rocm-6.3.1.tar.gz", "https://github.com/ROCm/hipSOLVER/archive/rocm-6.3.0.tar.gz", "https://github.com/ROCm/hipSOLVER/archive/rocm-6.2.4.tar.gz", "https://github.com/ROCm/hipSOLVER/archive/rocm-6.2.1.tar.gz", "https://github.com/ROCm/hipSOLVER/archive/rocm-6.2.0.tar.gz", "https://github.com/ROCm/hipSOLVER/archive/rocm-6.1.2.tar.gz", "https://github.com/ROCm/hipSOLVER/archive/rocm-6.1.1.tar.gz", "https://github.com/ROCm/hipSOLVER/archive/rocm-6.1.0.tar.gz", "https://github.com/ROCm/hipSOLVER/archive/rocm-6.0.2.tar.gz", "https://github.com/ROCm/hipSOLVER/archive/rocm-6.0.0.tar.gz", "https://github.com/ROCm/hipSOLVER/archive/rocm-5.7.1.tar.gz", "https://github.com/ROCm/hipSOLVER/archive/rocm-5.7.0.tar.gz", "https://github.com/ROCm/hipSOLVER.git" ], "homepages": [ "https://github.com/ROCm/hipSOLVER" ], "licenses": [ "MIT" ], "maintainers": [ "afzpatel", "cgmb", "renjithravindrankannath", "srekolam" ], "name": "hipsolver", "patches": [ "001-suite-sparse-include-path.patch when @6.1.0", "0001-suite-sparse-include-path-6.1.1.patch when @6.1.1:6.2" ], "summary": "hipSOLVER is a LAPACK marshalling library, with multiple supported\nbackends. It sits between the application and a 'worker' LAPACK library,\nmarshalling inputs into the backend library and marshalling results back\nto the application. hipSOLVER exports an interface that does not require\nthe client to change, regardless of the chosen backend. Currently,\nhipSOLVER supports rocSOLVER and cuSOLVER as backends.\n", "version": [ { "downloads": [ "https://github.com/ROCm/hipSOLVER/archive/rocm-5.7.0.tar.gz" ], "version": "5.7.0" }, { "downloads": [ "https://github.com/ROCm/hipSOLVER/archive/rocm-5.7.1.tar.gz" ], "version": "5.7.1" }, { "downloads": [ "https://github.com/ROCm/hipSOLVER/archive/rocm-6.0.0.tar.gz" ], "version": "6.0.0" }, { "downloads": [ "https://github.com/ROCm/hipSOLVER/archive/rocm-6.0.2.tar.gz" ], "version": "6.0.2" }, { "downloads": [ "https://github.com/ROCm/hipSOLVER/archive/rocm-6.1.0.tar.gz" ], "version": "6.1.0" }, { "downloads": [ "https://github.com/ROCm/hipSOLVER/archive/rocm-6.1.1.tar.gz" ], "version": "6.1.1" }, { "downloads": [ "https://github.com/ROCm/hipSOLVER/archive/rocm-6.1.2.tar.gz" ], "version": "6.1.2" }, { "downloads": [ "https://github.com/ROCm/hipSOLVER/archive/rocm-6.2.0.tar.gz" ], "version": "6.2.0" }, { "downloads": [ "https://github.com/ROCm/hipSOLVER/archive/rocm-6.2.1.tar.gz" ], "version": "6.2.1" }, { "downloads": [ "https://github.com/ROCm/hipSOLVER/archive/rocm-6.2.4.tar.gz" ], "version": "6.2.4" }, { "downloads": [ "https://github.com/ROCm/hipSOLVER/archive/rocm-6.3.0.tar.gz" ], "version": "6.3.0" }, { "downloads": [ "https://github.com/ROCm/hipSOLVER/archive/rocm-6.3.1.tar.gz" ], "version": "6.3.1" }, { "downloads": [ "https://github.com/ROCm/hipSOLVER/archive/rocm-6.3.2.tar.gz" ], "version": "6.3.2" }, { "downloads": [ "https://github.com/ROCm/hipSOLVER/archive/rocm-6.3.3.tar.gz" ], "version": "6.3.3" }, { "downloads": [ "https://github.com/ROCm/hipSOLVER/archive/rocm-6.4.0.tar.gz" ], "version": "6.4.0" }, { "downloads": [ "https://github.com/ROCm/hipSOLVER/archive/rocm-6.4.1.tar.gz" ], "version": "6.4.1" }, { "downloads": [ "https://github.com/ROCm/hipSOLVER/archive/rocm-6.4.2.tar.gz" ], "version": "6.4.2" }, { "downloads": [ "https://github.com/ROCm/hipSOLVER/archive/rocm-6.4.3.tar.gz" ], "version": "6.4.3" }, { "downloads": [ "https://github.com/ROCm/hipSOLVER/archive/rocm-7.0.0.tar.gz" ], "version": "7.0.0" }, { "downloads": [ "https://github.com/ROCm/hipSOLVER/archive/rocm-7.0.2.tar.gz" ], "version": "7.0.2" } ] }, "hipsparse": { "alias": [], "categories": [ "rocm", "detectable" ], "dependencies": [ "c", "cmake", "cuda", "cxx", "fortran", "git", "gmake", "googletest", "hip", "hsa-rocr-dev", "llvm-amdgpu", "ninja", "rocm-cmake", "rocsparse" ], "downloads": [ "https://github.com/ROCm/hipSPARSE/archive/rocm-7.0.2.tar.gz", "https://github.com/ROCm/hipSPARSE/archive/rocm-7.0.0.tar.gz", "https://github.com/ROCm/hipSPARSE/archive/rocm-6.4.3.tar.gz", "https://github.com/ROCm/hipSPARSE/archive/rocm-6.4.2.tar.gz", "https://github.com/ROCm/hipSPARSE/archive/rocm-6.4.1.tar.gz", "https://github.com/ROCm/hipSPARSE/archive/rocm-6.4.0.tar.gz", "https://github.com/ROCm/hipSPARSE/archive/rocm-6.3.3.tar.gz", "https://github.com/ROCm/hipSPARSE/archive/rocm-6.3.2.tar.gz", "https://github.com/ROCm/hipSPARSE/archive/rocm-6.3.1.tar.gz", "https://github.com/ROCm/hipSPARSE/archive/rocm-6.3.0.tar.gz", "https://github.com/ROCm/hipSPARSE/archive/rocm-6.2.4.tar.gz", "https://github.com/ROCm/hipSPARSE/archive/rocm-6.2.1.tar.gz", "https://github.com/ROCm/hipSPARSE/archive/rocm-6.2.0.tar.gz", "https://github.com/ROCm/hipSPARSE/archive/rocm-6.1.2.tar.gz", "https://github.com/ROCm/hipSPARSE/archive/rocm-6.1.1.tar.gz", "https://github.com/ROCm/hipSPARSE/archive/rocm-6.1.0.tar.gz", "https://github.com/ROCm/hipSPARSE/archive/rocm-6.0.2.tar.gz", "https://github.com/ROCm/hipSPARSE/archive/rocm-6.0.0.tar.gz", "https://github.com/ROCm/hipSPARSE/archive/rocm-5.7.1.tar.gz", "https://github.com/ROCm/hipSPARSE/archive/rocm-5.7.0.tar.gz", "https://github.com/ROCm/hipSPARSE.git" ], "homepages": [ "https://github.com/ROCm/hipSPARSE" ], "licenses": [ "MIT" ], "maintainers": [ "afzpatel", "cgmb", "haampie", "renjithravindrankannath", "srekolam" ], "name": "hipsparse", "patches": [ "https://github.com/ROCm/hipSPARSE/commit/037b54ecc129edaaff59d3df149a3f071466ba29.patch?full_index=1 when @6.3" ], "summary": "hipSPARSE is a SPARSE marshalling library, with multiple supported\nbackends\n", "version": [ { "downloads": [ "https://github.com/ROCm/hipSPARSE/archive/rocm-5.7.0.tar.gz" ], "version": "5.7.0" }, { "downloads": [ "https://github.com/ROCm/hipSPARSE/archive/rocm-5.7.1.tar.gz" ], "version": "5.7.1" }, { "downloads": [ "https://github.com/ROCm/hipSPARSE/archive/rocm-6.0.0.tar.gz" ], "version": "6.0.0" }, { "downloads": [ "https://github.com/ROCm/hipSPARSE/archive/rocm-6.0.2.tar.gz" ], "version": "6.0.2" }, { "downloads": [ "https://github.com/ROCm/hipSPARSE/archive/rocm-6.1.0.tar.gz" ], "version": "6.1.0" }, { "downloads": [ "https://github.com/ROCm/hipSPARSE/archive/rocm-6.1.1.tar.gz" ], "version": "6.1.1" }, { "downloads": [ "https://github.com/ROCm/hipSPARSE/archive/rocm-6.1.2.tar.gz" ], "version": "6.1.2" }, { "downloads": [ 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"version": "6.4.2" }, { "downloads": [ "https://github.com/ROCm/hipSPARSE/archive/rocm-6.4.3.tar.gz" ], "version": "6.4.3" }, { "downloads": [ "https://github.com/ROCm/hipSPARSE/archive/rocm-7.0.0.tar.gz" ], "version": "7.0.0" }, { "downloads": [ "https://github.com/ROCm/hipSPARSE/archive/rocm-7.0.2.tar.gz" ], "version": "7.0.2" } ] }, "hipsparselt": { "alias": [], "categories": [ "rocm", "detectable" ], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "googletest", "hip", "hipsparse", "hsa-rocr-dev", "llvm-amdgpu", "msgpack-c", "netlib-lapack", "ninja", "py-joblib", "py-pip", "py-pyyaml", "py-virtualenv", "py-wheel", "python", "python-venv", "rocm-openmp-extras", "rocm-smi-lib", "roctracer-dev" ], "downloads": [ "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-7.0.2.tar.gz", "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-7.0.0.tar.gz", "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-6.4.3.tar.gz", 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"https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-6.0.2.tar.gz", "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-6.0.0.tar.gz", "https://github.com/ROCm/hipsparseLt.git" ], "homepages": [ "https://github.com/ROCm/hipsparselt" ], "licenses": [ "MIT" ], "maintainers": [ "afzpatel", "renjithravindrankannath", "srekolam" ], "name": "hipsparselt", "patches": [ "0001-update-llvm-path-add-hipsparse-include-dir-for-spack.patch when @6.0", "0001-update-llvm-path-add-hipsparse-include-dir-for-spack-6.1.patch when @6.1", "0001-update-llvm-path-add-hipsparse-include-dir-for-spack-6.2.patch when @6.2", "0001-update-llvm-path-add-hipsparse-include-dir-for-spack-6.3.patch when @6.3", "0002-add-hipsparse-include.patch when @6.4" ], "summary": "hipSPARSELt is a SPARSE marshalling library, with multiple supported\nbackends. It sits between the application and a 'worker' SPARSE library,\nmarshalling inputs into the backend library and marshalling results back\nto the application. hipSPARSELt exports an interface that does not\nrequire the client to change, regardless of the chosen backend.\nCurrently, hipSPARSELt supports rocSPARSELt and cuSPARSELt v0.4 as\nbackends.\n", "version": [ { "downloads": [ "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-6.0.0.tar.gz" ], "version": "6.0.0" }, { "downloads": [ "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-6.0.2.tar.gz" ], "version": "6.0.2" }, { "downloads": [ "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-6.1.0.tar.gz" ], "version": "6.1.0" }, { "downloads": [ "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-6.1.1.tar.gz" ], "version": "6.1.1" }, { "downloads": [ "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-6.1.2.tar.gz" ], "version": "6.1.2" }, { "downloads": [ "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-6.2.0.tar.gz" ], "version": "6.2.0" }, { "downloads": [ "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-6.2.1.tar.gz" ], "version": "6.2.1" }, { "downloads": [ "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-6.2.4.tar.gz" ], "version": "6.2.4" }, { "downloads": [ "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-6.3.0.tar.gz" ], "version": "6.3.0" }, { "downloads": [ "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-6.3.1.tar.gz" ], "version": "6.3.1" }, { "downloads": [ "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-6.3.2.tar.gz" ], "version": "6.3.2" }, { "downloads": [ "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-6.3.3.tar.gz" ], "version": "6.3.3" }, { "downloads": [ "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-6.4.0.tar.gz" ], "version": "6.4.0" }, { "downloads": [ "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-6.4.1.tar.gz" ], "version": "6.4.1" }, { "downloads": [ "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-6.4.2.tar.gz" ], "version": "6.4.2" }, { "downloads": [ "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-6.4.3.tar.gz" ], "version": "6.4.3" }, { "downloads": [ "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-7.0.0.tar.gz" ], "version": "7.0.0" }, { "downloads": [ "https://github.com/ROCm/hipSPARSELt/archive/refs/tags/rocm-7.0.2.tar.gz" ], "version": "7.0.2" } ] }, "hipsycl": { "alias": [ { "alias_for": "hipsycl", "name": "sycl" } ], "categories": [], "dependencies": [ "boost", "c", "cmake", "cuda", "cxx", "gmake", "hip", "hsa-rocr-dev", "llvm", "llvm-amdgpu", "ninja", "python" ], "downloads": [ "https://github.com/illuhad/hipSYCL/archive/vdevelop.tar.gz", "https://github.com/illuhad/hipSYCL/archive/vstable.tar.gz", "https://github.com/illuhad/hipSYCL/archive/v24.10.0.tar.gz", "https://github.com/illuhad/hipSYCL/archive/v24.06.0.tar.gz", "https://github.com/illuhad/hipSYCL/archive/v24.02.0.tar.gz", "https://github.com/illuhad/hipSYCL/archive/v23.10.0.tar.gz", "https://github.com/illuhad/hipSYCL/archive/v0.9.4.tar.gz", "https://github.com/illuhad/hipSYCL/archive/v0.9.3.tar.gz", "https://github.com/illuhad/hipSYCL/archive/v0.9.2.tar.gz", "https://github.com/illuhad/hipSYCL/archive/v0.9.1.tar.gz", "https://github.com/illuhad/hipSYCL/archive/v0.8.0.tar.gz", "https://github.com/illuhad/hipSYCL.git" ], "homepages": [ "https://github.com/illuhad/hipSYCL" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "hipsycl", "patches": [], "summary": "hipSYCL is an implementation of the SYCL standard programming model over\nNVIDIA CUDA/AMD HIP\n", "version": [ { "repositories": [ { "commit": "2daf8407e49dd32ebd1c266e8e944e390d28b22a", "type": "git", "url": "https://github.com/illuhad/hipSYCL.git" } ], "version": "0.8.0" }, { "repositories": [ { "commit": "fe8465cd5399a932f7221343c07c9942b0fe644c", "type": "git", "url": "https://github.com/illuhad/hipSYCL.git" } ], "version": "0.9.1" }, { "repositories": [ { "commit": "49fd02499841ae884c61c738610e58c27ab51fdb", "type": "git", "url": "https://github.com/illuhad/hipSYCL.git" } ], "version": "0.9.2" }, { "repositories": [ { "commit": "51507bad524c33afe8b124804091b10fa25618dc", "type": "git", "url": "https://github.com/illuhad/hipSYCL.git" } ], "version": "0.9.3" }, { "repositories": [ { "commit": "99d9e24d462b35e815e0e59c1b611936c70464ae", "type": "git", "url": "https://github.com/illuhad/hipSYCL.git" } ], "version": "0.9.4" }, { "repositories": [ { "commit": "3952b468c9da89edad9dff953cdcab0a3c3bf78c", "type": "git", "url": "https://github.com/illuhad/hipSYCL.git" } ], "version": "23.10.0" }, { "repositories": [ { "commit": "974adc33ea5a35dd8b5be68c7a744b37482b8b64", "type": "git", "url": "https://github.com/illuhad/hipSYCL.git" } ], "version": "24.02.0" }, { "repositories": [ { "commit": "fc51dae9006d6858fc9c33148cc5f935bb56b075", "type": "git", "url": "https://github.com/illuhad/hipSYCL.git" } ], "version": "24.06.0" }, { "repositories": [ { "commit": "7677cf6eefd8ab46d66168cd07ab042109448124", "type": "git", "url": "https://github.com/illuhad/hipSYCL.git" } ], "version": "24.10.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/illuhad/hipSYCL.git" } ], "version": "develop" }, { "branch": "stable", "repositories": [ { "branch": "stable", "type": "git", "url": "https://github.com/illuhad/hipSYCL.git" } ], "version": "stable" } ] }, "hiptt": { "alias": [], "categories": [ "ecp", "radiuss" ], "dependencies": [ "cxx", "gmake", "hip", "hsa-rocr-dev", "llvm-amdgpu" ], "downloads": [ "https://github.com/DmitryLyakh/hipTT", "https://github.com/DmitryLyakh/hipTT.git" ], "homepages": [ "https://github.com/DmitryLyakh/hipTT" ], "licenses": [ "Unlicense" ], "maintainers": [ "bvanessen" ], "name": "hiptt", "patches": [ "bugfix_make.patch" ], "summary": "hipTT - Fast GPU Tensor Transpose for NVIDIA and AMD GPU.\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/DmitryLyakh/hipTT.git" } ], "version": "master" } ] }, "hiredis": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja", "openssl" ], "downloads": [ "https://github.com/redis/hiredis/archive/refs/tags/v1.1.0.tar.gz", "https://github.com/redis/hiredis/archive/refs/tags/v1.0.2.tar.gz", "https://github.com/redis/hiredis/archive/refs/tags/v1.0.1.tar.gz", "https://github.com/redis/hiredis/archive/refs/tags/v1.0.0.tar.gz", "https://github.com/redis/hiredis/archive/refs/tags/v0.14.1.tar.gz", "https://github.com/redis/hiredis/archive/refs/tags/v0.14.0.tar.gz", "https://github.com/redis/hiredis/archive/refs/tags/v0.13.3.tar.gz", "https://github.com/redis/hiredis/archive/refs/tags/v0.13.2.tar.gz", "https://github.com/redis/hiredis.git" ], "homepages": [ "https://github.com/redis/hiredis" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "lpottier", "rblake-llnl" ], "name": "hiredis", "patches": [], "summary": "Hiredis is a minimalistic C client library for the Redis database.\n", "version": [ { "downloads": [ "https://github.com/redis/hiredis/archive/refs/tags/v0.13.2.tar.gz" ], "version": "0.13.2" }, { "downloads": [ "https://github.com/redis/hiredis/archive/refs/tags/v0.13.3.tar.gz" ], "version": "0.13.3" }, { "downloads": [ "https://github.com/redis/hiredis/archive/refs/tags/v0.14.0.tar.gz" ], "version": "0.14.0" }, { "downloads": [ "https://github.com/redis/hiredis/archive/refs/tags/v0.14.1.tar.gz" ], "version": "0.14.1" }, { "downloads": [ "https://github.com/redis/hiredis/archive/refs/tags/v1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://github.com/redis/hiredis/archive/refs/tags/v1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://github.com/redis/hiredis/archive/refs/tags/v1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://github.com/redis/hiredis/archive/refs/tags/v1.1.0.tar.gz" ], "version": "1.1.0" } ] }, "hisat2": { "alias": [], "categories": [], "dependencies": [ "gmake", "ncbi-vdb", "perl", "python", "sra-tools" ], "downloads": [ "https://cloud.biohpc.swmed.edu/index.php/s/fE9QCsX3NH4QwBi/download", "https://cloud.biohpc.swmed.edu/index.php/s/hisat2-220-source/download", "ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-2.1.0-source.zip" ], "homepages": [ "https://daehwankimlab.github.io/hisat2/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "hisat2", "patches": [ "sra.patch when +sra" ], "summary": "HISAT2 is a fast and sensitive alignment program for mapping next-\ngeneration sequencing reads (whole-genome, transcriptome, and exome\nsequencing data) against the general human population (as well as\nagainst a single reference genome).\n", "version": [ { "downloads": [ "ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-2.1.0-source.zip" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.biohpc.swmed.edu/index.php/s/hisat2-220-source/download" ], "version": "2.2.0" }, { "downloads": [ "https://cloud.biohpc.swmed.edu/index.php/s/fE9QCsX3NH4QwBi/download" ], "version": "2.2.1" } ] }, "hisea": { "alias": [], "categories": [], "dependencies": [ "boost", "cxx", "gmake" ], "downloads": [ "https://github.com/lucian-ilie/HISEA/tarball/39e01e98caa0f2101da806ca59306296effe789c" ], "homepages": [ "https://doi.org/10.1186/s12859-017-1953-9" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "hisea", "patches": [], "summary": "HISEA is an efficient all-vs-all long read aligner for SMRT sequencing\ndata. Its algorithm is designed to produce highest alignment sensitivity\namong others.\n", "version": [ { "downloads": [ "https://github.com/lucian-ilie/HISEA/tarball/39e01e98caa0f2101da806ca59306296effe789c" ], "version": "2017.12.26" } ] }, "hive": { "alias": [], "categories": [], "dependencies": [ "hadoop" ], "downloads": [ "https://www.apache.org/dist/hive/hive-4.0.1/apache-hive-4.0.1-bin.tar.gz" ], "homepages": [ "https://hive.apache.org/" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "hive", "patches": [], "summary": " The Apache Hive data warehouse software facilitates reading, writing,\nand managing large datasets residing in distributed storage using SQL.\nStructure can be projected onto data already in storage. A command line\ntool and JDBC driver are provided to connect users to Hive.\n", "version": [ { "downloads": [ "https://www.apache.org/dist/hive/hive-4.0.1/apache-hive-4.0.1-bin.tar.gz" ], "version": "4.0.1" } ] }, "hivex": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "perl" ], "downloads": [ "https://libguestfs.org/download/hivex/hivex-1.3.23.tar.gz", "https://libguestfs.org/download/hivex/hivex-1.3.19.tar.gz", "https://libguestfs.org/download/hivex/hivex-1.3.18.tar.gz", "https://libguestfs.org/download/hivex/hivex-1.3.17.tar.gz" ], "homepages": [ "https://libguestfs.org" ], "licenses": [ "LGPL-2.1" ], "maintainers": [], "name": "hivex", "patches": [], "summary": "Windows Registry \"hive\" extraction library.\n", "version": [ { "downloads": [ "https://libguestfs.org/download/hivex/hivex-1.3.17.tar.gz" ], "version": "1.3.17" }, { "downloads": [ "https://libguestfs.org/download/hivex/hivex-1.3.18.tar.gz" ], "version": "1.3.18" }, { "downloads": [ "https://libguestfs.org/download/hivex/hivex-1.3.19.tar.gz" ], "version": "1.3.19" }, { "downloads": [ "https://libguestfs.org/download/hivex/hivex-1.3.23.tar.gz" ], "version": "1.3.23" } ] }, "hmmer": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gsl", "mpi" ], "downloads": [ "http://eddylab.org/software/hmmer/hmmer-3.4.tar.gz", "http://eddylab.org/software/hmmer/hmmer-3.3.2.tar.gz", "http://eddylab.org/software/hmmer/hmmer-3.3.tar.gz", "http://eddylab.org/software/hmmer/hmmer-3.2.1.tar.gz", "http://eddylab.org/software/hmmer/hmmer-3.1b2.tar.gz", "http://eddylab.org/software/hmmer/hmmer-3.0.tar.gz", "http://eddylab.org/software/hmmer/hmmer-2.4i.tar.gz", "http://eddylab.org/software/hmmer/hmmer-2.3.2.tar.gz", "http://eddylab.org/software/hmmer/hmmer-2.3.1.tar.gz" ], "homepages": [ "http://www.hmmer.org" ], "licenses": [], "maintainers": [], "name": "hmmer", "patches": [], "summary": "HMMER is used for searching sequence databases for sequence homologs,\nand for making sequence alignments. It implements methods using\nprobabilistic models called profile hidden Markov models (profile HMMs).\n", "version": [ { "downloads": [ "http://eddylab.org/software/hmmer/hmmer-2.3.1.tar.gz" ], "version": "2.3.1" }, { "downloads": [ "http://eddylab.org/software/hmmer/hmmer-2.3.2.tar.gz" ], "version": "2.3.2" }, { "downloads": [ "http://eddylab.org/software/hmmer/hmmer-2.4i.tar.gz" ], "version": "2.4i" }, { "downloads": [ "http://eddylab.org/software/hmmer/hmmer-3.0.tar.gz" ], "version": "3.0" }, { "downloads": [ "http://eddylab.org/software/hmmer/hmmer-3.1b2.tar.gz" ], "version": "3.1b2" }, { "downloads": [ "http://eddylab.org/software/hmmer/hmmer-3.2.1.tar.gz" ], "version": "3.2.1" }, { "downloads": [ "http://eddylab.org/software/hmmer/hmmer-3.3.tar.gz" ], "version": "3.3" }, { "downloads": [ "http://eddylab.org/software/hmmer/hmmer-3.3.2.tar.gz" ], "version": "3.3.2" }, { "downloads": [ "http://eddylab.org/software/hmmer/hmmer-3.4.tar.gz" ], "version": "3.4" } ] }, "hohqmesh": { "alias": [], "categories": [], "dependencies": [ "cmake", "fortran", "ftobjectlibrary", "gmake", "ninja" ], "downloads": [ "https://github.com/trixi-framework/HOHQMesh/archive/vmain.tar.gz", "https://github.com/trixi-framework/HOHQMesh/archive/v1.5.3.tar.gz", "https://github.com/trixi-framework/HOHQMesh/archive/v1.5.2.tar.gz", "https://github.com/trixi-framework/HOHQMesh/archive/v1.5.1.tar.gz", "https://github.com/trixi-framework/HOHQMesh/archive/v1.5.0.tar.gz", "https://github.com/trixi-framework/HOHQMesh/archive/v1.4.2.tar.gz", "https://github.com/trixi-framework/HOHQMesh/archive/v1.4.1.tar.gz", "https://github.com/trixi-framework/HOHQMesh/archive/v1.4.0.tar.gz", "https://github.com/trixi-framework/HOHQMesh/archive/v1.3.0.tar.gz", "https://github.com/trixi-framework/HOHQMesh/archive/v1.2.1.tar.gz", "https://github.com/trixi-framework/HOHQMesh/archive/v1.2.0.tar.gz", "https://github.com/trixi-framework/HOHQMesh/archive/v1.1.0.tar.gz", "https://github.com/trixi-framework/HOHQMesh/archive/v1.0.1.tar.gz", "https://github.com/trixi-framework/HOHQMesh/archive/v1.0.0.tar.gz", "https://github.com/trixi-framework/HOHQMesh.git" ], "homepages": [ "https://github.com/trixi-framework/HOHQMesh" ], "licenses": [ "MIT" ], "maintainers": [ "fluidnumerics-joe" ], "name": "hohqmesh", "patches": [], "summary": "High Order mesh generator for Hexahedral and Quadrilateral meshes.\n", "version": [ { "downloads": [ "https://github.com/trixi-framework/HOHQMesh/archive/v1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://github.com/trixi-framework/HOHQMesh/archive/v1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://github.com/trixi-framework/HOHQMesh/archive/v1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://github.com/trixi-framework/HOHQMesh/archive/v1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://github.com/trixi-framework/HOHQMesh/archive/v1.2.1.tar.gz" ], "version": "1.2.1" }, { 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It scales\nfrom a single CPU core to thousands of GPUs. You define particle initial\nconditions and interactions in a high-level python script. Then tell\nHOOMD-blue how you want to execute the job and it takes care of the\nrest. Python job scripts give you unlimited flexibility to create custom\ninitialization routines, control simulation parameters, and perform in\nsitu analysis.\n", "version": [ { "repositories": [ { "commit": "aa650aaf13721f2abf945e868f65b806fcc54fea", "type": "git", "url": "https://bitbucket.org/glotzer/hoomd-blue.git" } ], "version": "2.1.6" }, { "repositories": [ { "commit": "5007cf262c48aa72210bf93266aa175898ebb254", "type": "git", "url": "https://bitbucket.org/glotzer/hoomd-blue.git" } ], "version": "2.2.2" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://bitbucket.org/glotzer/hoomd-blue.git" } ], "version": "develop" } ] }, "hoppet": { "alias": [], "categories": [ "hep" ], "dependencies": [ "cxx", "fortran", "gmake", "gnuconfig" ], "downloads": [ "https://github.com/gavinsalam/hoppet/archive/refs/tags/hoppet-1.2.0.tar.gz" ], "homepages": [ "https://hoppet.hepforge.org/" ], "licenses": [], "maintainers": [ "haralmha" ], "name": "hoppet", "patches": [], "summary": "A Fortran 95 package for carrying out QCD DGLAP evolution and other\ncommon manipulations of parton distribution functions (PDFs).\n", "version": [ { "downloads": [ "https://github.com/gavinsalam/hoppet/archive/refs/tags/hoppet-1.2.0.tar.gz" ], "version": "1.2.0" } ] }, "hotspot": { "alias": [], "categories": [], "dependencies": [ "c", "gmake" ], "downloads": [ "https://github.com/uvahotspot/HotSpot.git" ], "homepages": [ "http://lava.cs.virginia.edu/HotSpot/index.htm" ], "licenses": [], "maintainers": [], "name": "hotspot", "patches": [], "summary": "HotSpot is an accurate and fast thermal model suitable for use ini\narchitectural studies.\n", "version": [ { "repositories": [ { "commit": "a7a3286e368867c26381e0a23e36b3e273bdeda9", "type": "git", "url": "https://github.com/uvahotspot/HotSpot.git" } ], "version": "6.0" } ] }, "hp2p": { "alias": [], "categories": [], "dependencies": [ "gmake", "gnuconfig", "mpi" ], "downloads": [ "https://github.com/cea-hpc/hp2p/releases/download/4.1/hp2p-4.1.tar.gz", "https://github.com/cea-hpc/hp2p.git" ], "homepages": [ "https://github.com/cea-hpc/hp2p" ], "licenses": [], "maintainers": [], "name": "hp2p", "patches": [], "summary": "HP2P (Heavy Peer To Peer) benchmark is a test which performs MPI Point-\nto-Point non-blocking communications between all MPI processes. Its goal\nis to measure the bandwidths and the latencies in a situation where the\nnetwork is busy. This benchmark can help to detect network problems like\ncongestions or problems with switches or links.\n", "version": [ { "downloads": [ "https://github.com/cea-hpc/hp2p/releases/download/4.1/hp2p-4.1.tar.gz" ], "version": "4.1" } ] }, "hpc-beeflow": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "neo4j", "py-apscheduler", "py-celery", "py-cffi", "py-cwl-utils", "py-docutils", "py-fastapi", "py-flask", "py-flask-restful", "py-graphviz", "py-gunicorn", "py-jsonpickle", "py-mypy-extensions", "py-neo4j", "py-networkx", "py-pip", "py-poetry", "py-pre-commit", "py-python-daemon", "py-pyyaml", "py-requests", "py-requests-unixsocket", "py-typer", "py-uvicorn", "py-wheel", "python", "python-venv", "redis" ], "downloads": [ "https://files.pythonhosted.org/packages/source/h/hpc_beeflow/hpc_beeflow-0.1.10.tar.gz", "https://files.pythonhosted.org/packages/source/h/hpc_beeflow/hpc_beeflow-spack-develop.tar.gz", "https://github.com/lanl/BEE.git" ], "homepages": [ "https://github.com/lanl/bee" ], "licenses": [ "MIT" ], "maintainers": [ "pagrubel" ], "name": "hpc-beeflow", "patches": [], "summary": "BEE is a workflow orchestration system designed to build containerized\nHPC applications and orchestrate workflows across HPC and cloud systems.\nBEE has adopted the Common Workflow Language (CWL) for specifying\nworkflows. Complex scientific workflows specified by CWL are managed and\nvisualized through a graph database, giving the user the ability to\nmonitor the state of each task in the workflow. BEE runs jobs using the\nworkload scheduler (i.e. Slurm or Flux) on the HPC system that tasks are\nspecified to run on.\n", "version": [ { "downloads": [ "https://files.pythonhosted.org/packages/source/h/hpc_beeflow/hpc_beeflow-0.1.10.tar.gz" ], "version": "0.1.10" }, { "branch": "spack-develop", "repositories": [ { "branch": "spack-develop", "type": "git", "url": "https://github.com/lanl/BEE.git" } ], "version": "spack-develop" } ] }, "hpcc": { "alias": [], "categories": [], "dependencies": [ "blas", "c", "fftw", "gmake", "mkl", "mpi" ], "downloads": [ "https://icl.cs.utk.edu/projectsfiles/hpcc/download/hpcc-develop.tar.gz", "https://icl.cs.utk.edu/projectsfiles/hpcc/download/hpcc-1.5.0.tar.gz", "https://github.com/icl-utk-edu/hpcc.git" ], "homepages": [ "https://icl.cs.utk.edu/hpcc" ], "licenses": [], "maintainers": [], "name": "hpcc", "patches": [], "summary": "HPC Challenge is a benchmark suite that measures a range memory access\npatterns. The HPC Challenge benchmark consists of basically 7 tests: 1)\nHPL - the Linpack TPP benchmark which measures the floating point rate\nof execution for solving a linear system of equations. 2) DGEMM -\nmeasures the floating point rate of execution of double precision real\nmatrix-matrix multiplication. 3) STREAM - a simple synthetic benchmark\nprogram that measures sustainable memory bandwidth (in GB/s) and the\ncorresponding computation rate for simple vector kernel. 4) PTRANS\n(parallel matrix transpose) - exercises the communications where pairs\nof processors communicate with each other simultaneously. It is a useful\ntest of the total communications capacity of the network. 5)\nRandomAccess - measures the rate of integer random updates of memory\n(GUPS). 6) FFT - measures the floating point rate of execution of double\nprecision complex one-dimensional Discrete Fourier Transform (DFT). 7)\nCommunication bandwidth and latency - a set of tests to measure latency\nand bandwidth of a number of simultaneous communication patterns; based\non b_eff (effective bandwidth benchmark).\n", "version": [ { "downloads": [ "https://icl.cs.utk.edu/projectsfiles/hpcc/download/hpcc-1.5.0.tar.gz" ], "version": "1.5.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/icl-utk-edu/hpcc.git" } ], "version": "develop" } ] }, "hpccg": { "alias": [], "categories": [ "proxy-app" ], "dependencies": [ "cxx", "gmake", "mpi" ], "downloads": [ "https://downloads.mantevo.org/releaseTarballs/miniapps/HPCCG/HPCCG-1.0.tar.gz" ], "homepages": [ "https://mantevo.org/about/applications/" ], "licenses": [], "maintainers": [], "name": "hpccg", "patches": [], "summary": "Proxy Application. Intended to be the 'best approximation to an\nunstructured implicit finite element or finite volume application in 800\nlines or fewer.'\n", "version": [ { "downloads": [ "https://downloads.mantevo.org/releaseTarballs/miniapps/HPCCG/HPCCG-1.0.tar.gz" ], "version": "1.0" } ] }, "hpcg": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "gnuconfig", "mpi" ], "downloads": [ "https://www.hpcg-benchmark.org/downloads/hpcg-develop.tar.gz", "https://www.hpcg-benchmark.org/downloads/hpcg-3.1.tar.gz", "https://github.com/hpcg-benchmark/hpcg.git" ], "homepages": [ "https://www.hpcg-benchmark.org" ], "licenses": [], "maintainers": [], "name": "hpcg", "patches": [ "https://github.com/hpcg-benchmark/hpcg/commit/e9e0b7e6cae23e1f30dd983c2ce2d3bd34d56f75.patch?full_index=1 when %gcc@9:", "https://github.com/hpcg-benchmark/hpcg/commit/e9e0b7e6cae23e1f30dd983c2ce2d3bd34d56f75.patch?full_index=1 when %aocc", "https://github.com/hpcg-benchmark/hpcg/commit/e9e0b7e6cae23e1f30dd983c2ce2d3bd34d56f75.patch?full_index=1 when %arm", "https://github.com/hpcg-benchmark/hpcg/commit/e9e0b7e6cae23e1f30dd983c2ce2d3bd34d56f75.patch?full_index=1 when %oneapi", "https://github.com/hpcg-benchmark/hpcg/commit/e9e0b7e6cae23e1f30dd983c2ce2d3bd34d56f75.patch?full_index=1 when %intel", "https://github.com/hpcg-benchmark/hpcg/commit/e9e0b7e6cae23e1f30dd983c2ce2d3bd34d56f75.patch?full_index=1 when %clang" ], "summary": "HPCG is a software package that performs a fixed number of multigrid\npreconditioned (using a symmetric Gauss-Seidel smoother) conjugate\ngradient (PCG) iterations using double precision (64 bit) floating point\nvalues.\n", "version": [ { "downloads": [ "https://www.hpcg-benchmark.org/downloads/hpcg-3.1.tar.gz" ], "version": "3.1" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/hpcg-benchmark/hpcg.git" } ], "version": "develop" } ] }, "hpctoolkit": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "autoconf", "automake", "binutils", "boost", "bzip2", "c", "cmake", "cuda", "cxx", "dyninst", "elfutils", "gmake", "gnuconfig", "googletest", "gotcha", "hip", "hpcviewer", "hsa-rocr-dev", "intel-gtpin", "intel-tbb", "intel-xed", "libdwarf", "libiberty", "libmonitor", "libpfm4", "libtool", "libunwind", "m4", "mbedtls", "memkind", "meson", "mpi", "ninja", "oneapi-igc", "oneapi-level-zero", "opencl-c-headers", "papi", "patchelf", "pkgconfig", "py-docutils", "py-myst-parser", "py-sphinx", "py-sphinx-book-theme", "python", "rocprofiler-dev", "roctracer-dev", "tbb", "xerces-c", "xxhash", "xz", "yaml-cpp", "zlib", "zlib-api" ], "downloads": [ "https://gitlab.com/hpctoolkit/hpctoolkit.git" ], "homepages": [ "https://hpctoolkit.org" ], "licenses": [ "Apache-2.0", "BSD-3-Clause" ], "maintainers": [ "mwkrentel" ], "name": "hpctoolkit", "patches": [ "gcc10-enum.patch when @2020.01.01:2020.8 %gcc@10.0:", "511afd95b01d743edc5940c84e0079f462b2c23e.patch when @2019.08.01:2021.3 %gcc@11.0:", "python3.patch when @2020.03:2020.8", "correcting-hsa-include-path.patch when @2024.01 ^hip@6.0:", "https://gitlab.com/hpctoolkit/hpctoolkit/-/merge_requests/1329.diff when @2025.0.1+gtpin" ], "summary": "HPCToolkit is an integrated suite of tools for measurement and analysis\nof program performance on computers ranging from multicore desktop\nsystems to the nation's largest supercomputers. By using statistical\nsampling of timers and hardware performance counters, HPCToolkit\ncollects accurate measurements of a program's work, resource\nconsumption, and inefficiency and attributes them to the full calling\ncontext in which they occur.\n", "version": [ { "repositories": [ { "commit": "e8a5cc87e8f5ddfd14338459a4106f8e0d162c83", "type": "git", "url": "https://gitlab.com/hpctoolkit/hpctoolkit.git" } ], "version": "2022.10.01" }, { "repositories": [ { "commit": "9e0daf2ad169f6c7f6c60408475b3c2f71baebbf", "type": "git", "url": "https://gitlab.com/hpctoolkit/hpctoolkit.git" } ], "version": "2023.03.01" }, { "branch": "2023.03.stable", "repositories": [ { "branch": "2023.03.stable", "type": "git", "url": "https://gitlab.com/hpctoolkit/hpctoolkit.git" } ], "version": "2023.03.stable" }, { "repositories": [ { "commit": "753a72affd584a5e72fe153d1e8c47a394a3886e", "type": "git", "url": "https://gitlab.com/hpctoolkit/hpctoolkit.git" } ], "version": "2023.08.1" }, { "branch": "2023.08.stable", "repositories": [ { "branch": "2023.08.stable", "type": "git", "url": "https://gitlab.com/hpctoolkit/hpctoolkit.git" } ], "version": "2023.08.stable" }, { "repositories": [ { "commit": "0672b9a9a2a1e3846c5e2059fb73a07a129f22cd", "type": "git", "url": "https://gitlab.com/hpctoolkit/hpctoolkit.git" } ], "version": "2024.01.1" }, { "branch": "2024.01.stable", "repositories": [ { "branch": "2024.01.stable", "type": "git", "url": "https://gitlab.com/hpctoolkit/hpctoolkit.git" } ], "version": "2024.01.stable" }, { "repositories": [ { "commit": "ed42fab06e0c4be41fba510f151a5ae153fbd5e5", "type": "git", "url": "https://gitlab.com/hpctoolkit/hpctoolkit.git" } ], "version": "2025.0.1" }, { "branch": "2025.0.stable", "repositories": [ { "branch": "2025.0.stable", "type": "git", "url": "https://gitlab.com/hpctoolkit/hpctoolkit.git" } ], "version": "2025.0.stable" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://gitlab.com/hpctoolkit/hpctoolkit.git" } ], "version": "develop" } ] }, "hpcviewer": { "alias": [], "categories": [], "dependencies": [ "java" ], "downloads": [ "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2025.2.0/downloads/hpcviewer-linux.gtk.x86_64.tar.gz", "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2025.01/downloads/hpcviewer-linux.gtk.x86_64.tgz", "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2024.09/downloads/hpcviewer-linux.gtk.x86_64.tgz", "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2024.02/downloads/hpcviewer-linux.gtk.x86_64.tgz", "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2023.07/downloads/hpcviewer-linux.gtk.x86_64.tgz", "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2023.05/downloads/hpcviewer-linux.gtk.x86_64.tgz", "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2023.04/downloads/hpcviewer-linux.gtk.x86_64.tgz", "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2023.02/downloads/hpcviewer-linux.gtk.x86_64.tgz", "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2023.01/downloads/hpcviewer-linux.gtk.x86_64.tgz", "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2022.10/downloads/hpcviewer-linux.gtk.x86_64.tgz", "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2022.06/downloads/hpcviewer-linux.gtk.x86_64.tgz", "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2022.03/downloads/hpcviewer-linux.gtk.x86_64.tgz", "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2022.01/downloads/hpcviewer-linux.gtk.x86_64.tgz" ], "homepages": [ "https://hpctoolkit.org" ], "licenses": [], "maintainers": [ "mwkrentel" ], "name": "hpcviewer", "patches": [], "summary": "Binary distribution of hpcviewer and integrated hpctraceviewer for the\nRice HPCToolkit (Linux x86_64, ppc64le and aarch64, and MacOSX x86_64\nand M1/M2). Note: hpctoolkit databases are platform independent, so you\ndon't need to install hpctoolkit to run the viewers and it's common to\nrun hpcrun and hpcviewer on different machines.\n", "version": [ { "downloads": [ "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2022.01/downloads/hpcviewer-linux.gtk.x86_64.tgz" ], "version": "2022.01" }, { "downloads": [ "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2022.03/downloads/hpcviewer-linux.gtk.x86_64.tgz" ], "version": "2022.03" }, { "downloads": [ "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2022.06/downloads/hpcviewer-linux.gtk.x86_64.tgz" ], "version": "2022.06" }, { "downloads": [ "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2022.10/downloads/hpcviewer-linux.gtk.x86_64.tgz" ], "version": "2022.10" }, { "downloads": [ "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2023.01/downloads/hpcviewer-linux.gtk.x86_64.tgz" ], "version": "2023.01" }, { "downloads": [ "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2023.02/downloads/hpcviewer-linux.gtk.x86_64.tgz" ], "version": "2023.02" }, { "downloads": [ "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2023.04/downloads/hpcviewer-linux.gtk.x86_64.tgz" ], "version": "2023.04" }, { "downloads": [ "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2023.05/downloads/hpcviewer-linux.gtk.x86_64.tgz" ], "version": "2023.05" }, { "downloads": [ "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2023.07/downloads/hpcviewer-linux.gtk.x86_64.tgz" ], "version": "2023.07" }, { "downloads": [ "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2024.02/downloads/hpcviewer-linux.gtk.x86_64.tgz" ], "version": "2024.02" }, { "downloads": [ "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2024.09/downloads/hpcviewer-linux.gtk.x86_64.tgz" ], "version": "2024.09" }, { "downloads": [ "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2025.01/downloads/hpcviewer-linux.gtk.x86_64.tgz" ], "version": "2025.01" }, { "downloads": [ "https://gitlab.com/hpctoolkit/hpcviewer/-/releases/2025.2.0/downloads/hpcviewer-linux.gtk.x86_64.tar.gz" ], "version": "2025.2.0" } ] }, "hpddm": { "alias": [], "categories": [], "dependencies": [ "arpack-ng", "blas", "c", "cxx", "fortran", "gmake", "hypre", "lapack", "mpi", "mumps", "python", "scalapack" ], "downloads": [ "https://github.com/hpddm/hpddm", "https://github.com/hpddm/hpddm", "https://github.com/hpddm/hpddm", "https://github.com/hpddm/hpddm", "https://github.com/hpddm/hpddm", "https://github.com/hpddm/hpddm", "https://github.com/hpddm/hpddm", "https://github.com/hpddm/hpddm.git" ], "homepages": [ "https://github.com/hpddm/hpddm" ], "licenses": [ "LGPL-3.0-or-later" ], "maintainers": [ "corentin-dev" ], "name": "hpddm", "patches": [], "summary": "High-performance unified framework for domain decomposition methods.\n", "version": [ { "repositories": [ { "commit": "e58205623814f59bf2aec2e2bab8eafcfbd22466", "type": "git", "url": "https://github.com/hpddm/hpddm.git" } ], "version": "2.1.2" }, { "repositories": [ { "commit": "32025e4ee75a16fa67399d26dd86910c03910dba", "type": "git", "url": "https://github.com/hpddm/hpddm.git" } ], "version": "2.1.3" }, { "repositories": [ { "commit": "5641877b44006c012c7fda0593d44e11c19c1c5b", "type": "git", "url": "https://github.com/hpddm/hpddm.git" } ], "version": "2.2.0" }, { "repositories": [ { "commit": "382ee53a2fb9dcb3ff32424a2cbe6dc3cea89514", "type": "git", "url": "https://github.com/hpddm/hpddm.git" } ], "version": "2.2.1" }, { "repositories": [ { "commit": "ff61cf3ced922c2f896ebe1fff1a42f1f2805a3a", "type": "git", "url": "https://github.com/hpddm/hpddm.git" } ], "version": "2.2.2" }, { "repositories": [ { "commit": "54228a5288a38cf1a144df13c96b00ac9240179c", "type": "git", "url": "https://github.com/hpddm/hpddm.git" } ], "version": "2.2.3" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/hpddm/hpddm.git" } ], "version": "main" } ] }, "hpgmg": { "alias": [], "categories": [ "proxy-app" ], "dependencies": [ "c", "cuda", "gmake", "mpi", "petsc", "python" ], "downloads": [ "https://hpgmg.org/static/hpgmg-develop.tar.gz", "https://hpgmg.org/static/hpgmg-0.4.tar.gz", "https://hpgmg.org/static/hpgmg-0.3.tar.gz", "https://hpgmg.org/static/hpgmg-a0a5510df23b.tar.gz", "https://bitbucket.org/hpgmg/hpgmg.git" ], "homepages": [ "https://bitbucket.org/hpgmg/hpgmg" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "hpgmg", "patches": [], "summary": "HPGMG implements full multigrid (FMG) algorithms using finite-volume and\nfinite-element methods. Different algorithmic variants adjust the\narithmetic intensity and architectural properties that are tested. These\nFMG methods converge up to discretization error in one F-cycle, thus may\nbe considered direct solvers. An F-cycle visits the finest level a total\nof two times, the first coarsening (8x smaller) 4 times, the second\ncoarsening 6 times, etc.\n", "version": [ { "downloads": [ "https://hpgmg.org/static/hpgmg-0.3.tar.gz" ], "version": "0.3" }, { "downloads": [ "https://hpgmg.org/static/hpgmg-0.4.tar.gz" ], "version": "0.4" }, { "downloads": [ "https://hpgmg.org/static/hpgmg-a0a5510df23b.tar.gz" ], "version": "a0a5510df23b" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://bitbucket.org/hpgmg/hpgmg.git" } ], "version": "develop" } ] }, "hping": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libpcap", "tcl" ], "downloads": [ "https://github.com/antirez/hping.git" ], "homepages": [ "http://www.hping.org" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "hping", "patches": [ "bpf.patch" ], "summary": "hping is a command-line oriented TCP/IP packet assembler/analyzer.\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/antirez/hping.git" } ], "version": "master" } ] }, "hpl": { "alias": [], "categories": [], "dependencies": [ "autoconf", "autoconf-archive", "automake", "blas", "c", "gmake", "gnuconfig", "libtool", "m4", "mpi" ], "downloads": [ "https://www.netlib.org/benchmark/hpl/hpl-2.3.tar.gz", "https://www.netlib.org/benchmark/hpl/hpl-2.2.tar.gz" ], "homepages": [ "https://www.netlib.org/benchmark/hpl/" ], "licenses": [], "maintainers": [], "name": "hpl", "patches": [], "summary": "HPL is a software package that solves a (random) dense linear system in\ndouble precision (64 bits) arithmetic on distributed-memory computers.\nIt can thus be regarded as a portable as well as freely available\nimplementation of the High Performance Computing Linpack Benchmark.\n", "version": [ { "downloads": [ "https://www.netlib.org/benchmark/hpl/hpl-2.2.tar.gz" ], "version": "2.2" }, { "downloads": [ "https://www.netlib.org/benchmark/hpl/hpl-2.3.tar.gz" ], "version": "2.3" } ] }, "hpx": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "apex", "asio", "boost", "cmake", "cuda", "cxx", "git", "gmake", "gperftools", "hip", "hsa-rocr-dev", "hwloc", "jemalloc", "lci", "llvm-amdgpu", "mimalloc", "mpi", "ninja", "papi", "python", "tbb", "valgrind" ], "downloads": [ "https://github.com/STEllAR-GROUP/hpx/archive/v0.0.0.tar.gz", "https://github.com/STEllAR-GROUP/hpx.git" ], "homepages": [ "https://hpx.stellar-group.org/" ], "licenses": [ "BSL-1.0" ], "maintainers": [ "albestro", "diehlpk", "hkaiser", "msimberg", "teonnik" ], "name": "hpx", "patches": [ "mimalloc_no_version_requirement.patch when @:1.8.0 malloc=mimalloc" ], "summary": "C++ runtime system for parallel and distributed applications.\n", "version": [ { "downloads": [ "https://github.com/STEllAR-GROUP/hpx/archive/1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://github.com/STEllAR-GROUP/hpx/archive/v1.10.0.tar.gz" ], "version": "1.10.0" }, { "downloads": [ "https://github.com/STEllAR-GROUP/hpx/archive/v1.11.0.tar.gz" ], "version": "1.11.0" }, { "downloads": [ "https://github.com/STEllAR-GROUP/hpx/archive/1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://github.com/STEllAR-GROUP/hpx/archive/1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://github.com/STEllAR-GROUP/hpx/archive/1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://github.com/STEllAR-GROUP/hpx/archive/1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://github.com/STEllAR-GROUP/hpx/archive/1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://github.com/STEllAR-GROUP/hpx/archive/1.5.0.tar.gz" ], "version": "1.5.0" }, { "downloads": [ "https://github.com/STEllAR-GROUP/hpx/archive/1.5.1.tar.gz" ], "version": "1.5.1" }, { "downloads": [ "https://github.com/STEllAR-GROUP/hpx/archive/1.6.0.tar.gz" ], "version": "1.6.0" }, { "downloads": [ "https://github.com/STEllAR-GROUP/hpx/archive/1.7.0.tar.gz" ], "version": "1.7.0" }, { "downloads": [ "https://github.com/STEllAR-GROUP/hpx/archive/1.7.1.tar.gz" ], "version": "1.7.1" }, { "downloads": [ "https://github.com/STEllAR-GROUP/hpx/archive/1.8.0.tar.gz" ], "version": "1.8.0" }, { "downloads": [ "https://github.com/STEllAR-GROUP/hpx/archive/1.8.1.tar.gz" ], "version": "1.8.1" }, { "downloads": [ "https://github.com/STEllAR-GROUP/hpx/archive/v1.9.0.tar.gz" ], "version": "1.9.0" }, { "downloads": [ "https://github.com/STEllAR-GROUP/hpx/archive/v1.9.1.tar.gz" ], "version": "1.9.1" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/STEllAR-GROUP/hpx.git" } ], "version": "master" }, { "branch": "stable", "repositories": [ { "branch": "stable", "type": "git", "url": "https://github.com/STEllAR-GROUP/hpx.git" } ], "version": "stable" } ] }, "hpx-kokkos": { "alias": [], "categories": [], "dependencies": [ "cmake", "cuda", "cxx", "gmake", "hip", "hpx", "hsa-rocr-dev", "kokkos", "llvm-amdgpu", "ninja" ], "downloads": [ "https://github.com/STEllAR-GROUP/hpx-kokkos/archive/master.tar.gz", "https://github.com/STEllAR-GROUP/hpx-kokkos/archive/0.4.1.tar.gz", "https://github.com/STEllAR-GROUP/hpx-kokkos/archive/0.4.0.tar.gz", "https://github.com/STEllAR-GROUP/hpx-kokkos/archive/0.3.0.tar.gz", "https://github.com/STEllAR-GROUP/hpx-kokkos/archive/0.2.0.tar.gz", "https://github.com/STEllAR-GROUP/hpx-kokkos.git" ], "homepages": [ "https://github.com/STEllAR-GROUP/hpx-kokkos" ], "licenses": [ "BSL-1.0" ], "maintainers": [ "G-071", "msimberg" ], "name": "hpx-kokkos", "patches": [], "summary": "HPXKokkos is an interoperability library for HPX and Kokkos\n", "version": [ { "downloads": [ "https://github.com/STEllAR-GROUP/hpx-kokkos/archive/0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://github.com/STEllAR-GROUP/hpx-kokkos/archive/0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://github.com/STEllAR-GROUP/hpx-kokkos/archive/0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://github.com/STEllAR-GROUP/hpx-kokkos/archive/0.4.1.tar.gz" ], "version": "0.4.1" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/STEllAR-GROUP/hpx-kokkos.git" } ], "version": "master" } ] }, "hpx5": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "cxx", "gmake", "gnuconfig", "hwloc", "jemalloc", "libtool", "m4", "metis", "mpi", "opencl", "pkgconfig" ], "downloads": [ "https://github.com/adk9/hpx5/archive/v4.1.0.tar.gz", "https://github.com/adk9/hpx5/archive/v4.0.0.tar.gz", "https://github.com/adk9/hpx5/archive/v3.1.0.tar.gz", "https://github.com/adk9/hpx5/archive/v3.0.0.tar.gz", "https://github.com/adk9/hpx5/archive/v2.2.0.tar.gz", "https://github.com/adk9/hpx5/archive/v2.1.0.tar.gz", "https://github.com/adk9/hpx5/archive/v2.0.0.tar.gz" ], "homepages": [ "http://hpx.crest.iu.edu" ], "licenses": [], "maintainers": [], "name": "hpx5", "patches": [ "configure.patch when @4.0.0" ], "summary": "The HPX-5 Runtime System. HPX-5 (High Performance ParalleX) is an open\nsource, portable, performance-oriented runtime developed at CREST\n(Indiana University). HPX-5 provides a distributed programming model\nallowing programs to run unmodified on systems from a single SMP to\nlarge clusters and supercomputers with thousands of nodes. HPX-5\nsupports a wide variety of Intel and ARM platforms. It is being used by\na broad range of scientific applications enabling scientists to write\ncode that performs and scales better than contemporary runtimes.\n", "version": [ { "downloads": [ "https://github.com/adk9/hpx5/archive/v2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://github.com/adk9/hpx5/archive/v2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://github.com/adk9/hpx5/archive/v2.2.0.tar.gz" ], "version": "2.2.0" }, { "downloads": [ "https://github.com/adk9/hpx5/archive/v3.0.0.tar.gz" ], "version": "3.0.0" }, { "downloads": [ "https://github.com/adk9/hpx5/archive/v3.1.0.tar.gz" ], "version": "3.1.0" }, { "downloads": [ "https://github.com/adk9/hpx5/archive/v4.0.0.tar.gz" ], "version": "4.0.0" }, { "downloads": [ "https://github.com/adk9/hpx5/archive/v4.1.0.tar.gz" ], "version": "4.1.0" } ] }, "hsa-amd-aqlprofile": { "alias": [], "categories": [ "rocm" ], "dependencies": [ "c", "cmake", "cxx", "gmake", "hsa-rocr-dev", "ninja" ], "downloads": [ "https://github.com/ROCm/aqlprofile/archive/refs/tags/rocm-7.0.2.tar.gz", "https://github.com/ROCm/aqlprofile/archive/refs/tags/rocm-7.0.0.tar.gz" ], "homepages": [ "https://github.com/ROCm/aqlprofile" ], "licenses": [], "maintainers": [ "afzpatel", "renjithravindrankannath", "srekolam" ], "name": "hsa-amd-aqlprofile", "patches": [], "summary": "Architected Queuing Language Profiling Library AQLprofile is an open\nsource library that enables advanced GPU profiling and tracing on AMD\nplatforms\n", "version": [ { "downloads": [ "https://github.com/ROCm/aqlprofile/archive/refs/tags/rocm-7.0.0.tar.gz" ], "version": "7.0.0" }, { "downloads": [ "https://github.com/ROCm/aqlprofile/archive/refs/tags/rocm-7.0.2.tar.gz" ], "version": "7.0.2" } ] }, "hsa-rocr-dev": { "alias": [], "categories": [ "rocm", "detectable" ], "dependencies": [ "c", "cmake", "cxx", "elf", "gmake", "hsakmt-roct", "libdrm", "llvm-amdgpu", "ninja", "numactl", "pkgconfig", "rocm-core", "rocprofiler-register", "xxd" ], "downloads": [ "https://github.com/ROCm/ROCR-Runtime/archive/rocm-7.0.2.tar.gz", "https://github.com/ROCm/ROCR-Runtime/archive/rocm-7.0.0.tar.gz", "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.4.3.tar.gz", "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.4.2.tar.gz", "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.4.1.tar.gz", "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.4.0.tar.gz", "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.3.3.tar.gz", "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.3.2.tar.gz", "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.3.1.tar.gz", "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.3.0.tar.gz", "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.2.4.tar.gz", "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.2.1.tar.gz", "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.2.0.tar.gz", "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.1.2.tar.gz", "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.1.1.tar.gz", "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.1.0.tar.gz", "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.0.2.tar.gz", "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.0.0.tar.gz", "https://github.com/ROCm/ROCR-Runtime/archive/rocm-5.7.1.tar.gz", "https://github.com/ROCm/ROCR-Runtime/archive/rocm-5.7.0.tar.gz", "https://github.com/ROCm/ROCR-Runtime.git" ], "homepages": [ "https://github.com/ROCm/ROCR-Runtime" ], "licenses": [], "maintainers": [ "afzpatel", "haampie", "renjithravindrankannath", "srekolam" ], "name": "hsa-rocr-dev", "patches": [], "summary": "This repository includes the user mode API nterfaces and libraries\nnecessary for host applications to launch computer kernels to available\nHSA ROCm kernel agents.AMD Heterogeneous System Architecture HSA - Linux\nHSA Runtime for Boltzmann (ROCm) platforms.\n", "version": [ { "downloads": [ "https://github.com/ROCm/ROCR-Runtime/archive/rocm-5.7.0.tar.gz" ], "version": "5.7.0" }, { "downloads": [ "https://github.com/ROCm/ROCR-Runtime/archive/rocm-5.7.1.tar.gz" ], "version": "5.7.1" }, { "downloads": [ "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.0.0.tar.gz" ], "version": "6.0.0" }, { "downloads": [ "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.0.2.tar.gz" ], "version": "6.0.2" }, { "downloads": [ "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.1.0.tar.gz" ], "version": "6.1.0" }, { "downloads": [ "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.1.1.tar.gz" ], "version": "6.1.1" }, { "downloads": [ "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.1.2.tar.gz" ], "version": "6.1.2" }, { "downloads": [ "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.2.0.tar.gz" ], "version": "6.2.0" }, { "downloads": [ "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.2.1.tar.gz" ], "version": "6.2.1" }, { "downloads": [ "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.2.4.tar.gz" ], "version": "6.2.4" }, { "downloads": [ "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.3.0.tar.gz" ], "version": "6.3.0" }, { "downloads": [ "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.3.1.tar.gz" ], "version": "6.3.1" }, { "downloads": [ "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.3.2.tar.gz" ], "version": "6.3.2" }, { "downloads": [ "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.3.3.tar.gz" ], "version": "6.3.3" }, { "downloads": [ "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.4.0.tar.gz" ], "version": "6.4.0" }, { "downloads": [ "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.4.1.tar.gz" ], "version": "6.4.1" }, { "downloads": [ "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.4.2.tar.gz" ], "version": "6.4.2" }, { "downloads": [ "https://github.com/ROCm/ROCR-Runtime/archive/rocm-6.4.3.tar.gz" ], "version": "6.4.3" }, { "downloads": [ "https://github.com/ROCm/ROCR-Runtime/archive/rocm-7.0.0.tar.gz" ], "version": "7.0.0" }, { "downloads": [ "https://github.com/ROCm/ROCR-Runtime/archive/rocm-7.0.2.tar.gz" ], "version": "7.0.2" } ] }, "hsakmt": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://www.x.org/archive/individual/lib/hsakmt-1.0.0.tar.gz" ], "homepages": [ "https://cgit.freedesktop.org/amd/hsakmt/" ], "licenses": [ "MIT" ], "maintainers": [], "name": "hsakmt", "patches": [], "summary": "hsakmt is a thunk library that provides a userspace interface to amdkfd\n(AMD's HSA Linux kernel driver). It is the HSA equivalent of libdrm.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/hsakmt-1.0.0.tar.gz" ], "version": "1.0.0" } ] }, "hsakmt-roct": { "alias": [], "categories": [ "rocm" ], "dependencies": [ "c", "cmake", "cxx", "gmake", "libdrm", "llvm-amdgpu", "ninja", "numactl", "pkgconfig", "rocm-core" ], "downloads": [ "https://github.com/ROCm/ROCT-Thunk-Interface/archive/rocm-6.2.4.tar.gz", "https://github.com/ROCm/ROCT-Thunk-Interface/archive/rocm-6.2.1.tar.gz", "https://github.com/ROCm/ROCT-Thunk-Interface/archive/rocm-6.2.0.tar.gz", "https://github.com/ROCm/ROCT-Thunk-Interface/archive/rocm-6.1.2.tar.gz", "https://github.com/ROCm/ROCT-Thunk-Interface/archive/rocm-6.1.1.tar.gz", "https://github.com/ROCm/ROCT-Thunk-Interface/archive/rocm-6.1.0.tar.gz", "https://github.com/ROCm/ROCT-Thunk-Interface/archive/rocm-6.0.2.tar.gz", "https://github.com/ROCm/ROCT-Thunk-Interface/archive/rocm-6.0.0.tar.gz", "https://github.com/ROCm/ROCT-Thunk-Interface/archive/rocm-5.7.1.tar.gz", "https://github.com/ROCm/ROCT-Thunk-Interface/archive/rocm-5.7.0.tar.gz", "https://github.com/ROCm/ROCT-Thunk-Interface.git" ], "homepages": [ "https://github.com/ROCm/ROCT-Thunk-Interface" ], "licenses": [], "maintainers": [ "renjithravindrankannath", "srekolam" ], "name": "hsakmt-roct", "patches": [], "summary": "This is a thunk python recipe to build and install Thunk Interface.\nThunk Interface is a user-mode API interfaces used to interact with the\nROCk driver.\n", "version": [ { "downloads": [ "https://github.com/ROCm/ROCT-Thunk-Interface/archive/rocm-5.7.0.tar.gz" ], "version": "5.7.0" }, { "downloads": [ "https://github.com/ROCm/ROCT-Thunk-Interface/archive/rocm-5.7.1.tar.gz" ], "version": "5.7.1" }, { "downloads": [ "https://github.com/ROCm/ROCT-Thunk-Interface/archive/rocm-6.0.0.tar.gz" ], "version": "6.0.0" }, { "downloads": [ "https://github.com/ROCm/ROCT-Thunk-Interface/archive/rocm-6.0.2.tar.gz" ], "version": "6.0.2" }, { "downloads": [ "https://github.com/ROCm/ROCT-Thunk-Interface/archive/rocm-6.1.0.tar.gz" ], "version": "6.1.0" }, { "downloads": [ "https://github.com/ROCm/ROCT-Thunk-Interface/archive/rocm-6.1.1.tar.gz" ], "version": "6.1.1" }, { "downloads": [ "https://github.com/ROCm/ROCT-Thunk-Interface/archive/rocm-6.1.2.tar.gz" ], "version": "6.1.2" }, { "downloads": [ "https://github.com/ROCm/ROCT-Thunk-Interface/archive/rocm-6.2.0.tar.gz" ], "version": "6.2.0" }, { "downloads": [ "https://github.com/ROCm/ROCT-Thunk-Interface/archive/rocm-6.2.1.tar.gz" ], "version": "6.2.1" }, { "downloads": [ "https://github.com/ROCm/ROCT-Thunk-Interface/archive/rocm-6.2.4.tar.gz" ], "version": "6.2.4" } ] }, "hsf-cmaketools": { "alias": [], "categories": [], "dependencies": [], "downloads": [ "https://github.com/HSF/cmaketools/archive/master.tar.gz", "https://github.com/HSF/cmaketools/archive/1.8.tar.gz", "https://github.com/HSF/cmaketools.git" ], "homepages": [ "https://github.com/HSF/cmaketools/" ], "licenses": [], "maintainers": [ "vvolkl" ], "name": "hsf-cmaketools", "patches": [], "summary": "CMake 'Find' modules for commonly used HEP Packages\n", "version": [ { "downloads": [ "https://github.com/HSF/cmaketools/archive/1.8.tar.gz" ], "version": "1.8" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/HSF/cmaketools.git" } ], "version": "master" } ] }, "hssp": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "boost", "cxx", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://github.com/cmbi/hssp/archive/3.1.5.tar.gz", "https://github.com/cmbi/hssp/archive/3.0.10.tar.gz", "https://github.com/cmbi/hssp/archive/3.0.9.tar.gz", "https://github.com/cmbi/hssp/archive/3.0.8.tar.gz", "https://github.com/cmbi/hssp/archive/3.0.7.tar.gz", "https://github.com/cmbi/hssp/archive/3.0.6.tar.gz", "https://github.com/cmbi/hssp/archive/3.0.5.tar.gz", "https://github.com/cmbi/hssp/archive/3.0.4.tar.gz", "https://github.com/cmbi/hssp/archive/3.0.3.tar.gz", "https://github.com/cmbi/hssp/archive/3.0.2.tar.gz", "https://github.com/cmbi/hssp/archive/3.0.1.tar.gz" ], "homepages": [ "https://github.com/cmbi/hssp" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "hssp", "patches": [], "summary": "The source code for building the mkhssp and hsspconv programs is bundled\nin the hssp project. The mkhssp executable creates stockholm files with\nhssp annotations in them. The hsspconv executable converts stockholm to\nthe original hssp format.\n", "version": [ { "downloads": [ "https://github.com/cmbi/hssp/archive/3.0.1.tar.gz" ], "version": "3.0.1" }, { "downloads": [ "https://github.com/cmbi/hssp/archive/3.0.10.tar.gz" ], "version": "3.0.10" }, { "downloads": [ "https://github.com/cmbi/hssp/archive/3.0.2.tar.gz" ], "version": "3.0.2" }, { "downloads": [ "https://github.com/cmbi/hssp/archive/3.0.3.tar.gz" ], "version": "3.0.3" }, { "downloads": [ "https://github.com/cmbi/hssp/archive/3.0.4.tar.gz" ], "version": "3.0.4" }, { "downloads": [ "https://github.com/cmbi/hssp/archive/3.0.5.tar.gz" ], "version": "3.0.5" }, { "downloads": [ "https://github.com/cmbi/hssp/archive/3.0.6.tar.gz" ], "version": "3.0.6" }, { "downloads": [ "https://github.com/cmbi/hssp/archive/3.0.7.tar.gz" ], "version": "3.0.7" }, { "downloads": [ "https://github.com/cmbi/hssp/archive/3.0.8.tar.gz" ], "version": "3.0.8" }, { "downloads": [ 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"https://www2.pv.infn.it/~hepcomplex/hto4l.html" ], "licenses": [], "maintainers": [ "haralmha" ], "name": "hto4l", "patches": [], "summary": "Hto4l is an event generator for the SM Higgs decay into 4 charged\nleptons up to NLOPS electroweak accuracy and in presence of dimension-6\noperators.\n", "version": [ { "downloads": [ "https://www2.pv.infn.it/hepcomplex/releases/hto4l/Hto4l-v2.02.tar.bz2" ], "version": "2.02" } ] }, "htop": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "hwloc", "libtool", "m4", "ncurses", "python" ], "downloads": [ "https://github.com/htop-dev/htop/archive/refs/tags/3.4.1.tar.gz", "https://github.com/htop-dev/htop/archive/refs/tags/3.4.0.tar.gz", "https://github.com/htop-dev/htop/archive/refs/tags/3.3.0.tar.gz", "https://github.com/htop-dev/htop/archive/refs/tags/3.2.2.tar.gz", "https://github.com/htop-dev/htop/archive/refs/tags/3.2.1.tar.gz", 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It primarily aims at helping applications with gathering\ninformation about modern computing hardware so as to exploit it\naccordingly and efficiently.\n", "version": [ { "downloads": [ "https://download.open-mpi.org/release/hwloc/v1.11/hwloc-1.11.1.tar.gz" ], "version": "1.11.1" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v1.11/hwloc-1.11.10.tar.gz" ], "version": "1.11.10" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v1.11/hwloc-1.11.11.tar.gz" ], "version": "1.11.11" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v1.11/hwloc-1.11.12.tar.gz" ], "version": "1.11.12" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v1.11/hwloc-1.11.13.tar.gz" ], "version": "1.11.13" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v1.11/hwloc-1.11.2.tar.gz" ], "version": "1.11.2" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v1.11/hwloc-1.11.3.tar.gz" ], "version": "1.11.3" }, { "downloads": [ 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"2.0.1" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v2.0/hwloc-2.0.2.tar.gz" ], "version": "2.0.2" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v2.0/hwloc-2.0.3.tar.gz" ], "version": "2.0.3" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v2.0/hwloc-2.0.4.tar.gz" ], "version": "2.0.4" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v2.1/hwloc-2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v2.10/hwloc-2.10.0.tar.gz" ], "version": "2.10.0" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v2.11/hwloc-2.11.1.tar.gz" ], "version": "2.11.1" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v2.12/hwloc-2.12.2.tar.gz" ], "version": "2.12.2" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v2.2/hwloc-2.2.0.tar.gz" ], "version": "2.2.0" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v2.3/hwloc-2.3.0.tar.gz" ], "version": "2.3.0" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v2.4/hwloc-2.4.0.tar.gz" ], "version": "2.4.0" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v2.4/hwloc-2.4.1.tar.gz" ], "version": "2.4.1" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v2.5/hwloc-2.5.0.tar.gz" ], "version": "2.5.0" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v2.6/hwloc-2.6.0.tar.gz" ], "version": "2.6.0" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v2.7/hwloc-2.7.0.tar.gz" ], "version": "2.7.0" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v2.7/hwloc-2.7.1.tar.gz" ], "version": "2.7.1" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v2.8/hwloc-2.8.0.tar.gz" ], "version": "2.8.0" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v2.9/hwloc-2.9.0.tar.gz" ], "version": "2.9.0" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v2.9/hwloc-2.9.1.tar.gz" ], "version": "2.9.1" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v2.9/hwloc-2.9.2.tar.gz" ], "version": "2.9.2" }, { "downloads": [ "https://download.open-mpi.org/release/hwloc/v2.9/hwloc-2.9.3.tar.gz" ], "version": "2.9.3" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/open-mpi/hwloc.git" } ], "version": "master" } ] }, "hybpiper": { "alias": [], "categories": [], "dependencies": [ "bbmap", "blast-plus", "bwa", "diamond", "exonerate", "mafft", "parallel", "py-biopython", "py-matplotlib", "py-pandas", "py-pebble", "py-pip", "py-progressbar2", "py-psutil", "py-scipy", "py-seaborn", "py-wheel", "python", "python-venv", "samtools", "spades" ], "downloads": [ "https://github.com/mossmatters/HybPiper/archive/v2.1.8.tar.gz", "https://github.com/mossmatters/HybPiper/archive/v1.3.1.tar.gz", "https://github.com/mossmatters/HybPiper/archive/v1.2.0.tar.gz", "https://github.com/mossmatters/HybPiper/HybPiper.git" ], "homepages": [ "https://github.com/mossmatters/HybPiper" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [ "snehring" ], "name": "hybpiper", "patches": [], "summary": "HybPiper was designed for targeted sequence capture, in which DNA\nsequencing libraries are enriched for gene regions of interest,\nespecially for phylogenetics. HybPiper is a suite of Python scripts that\nwrap and connect bioinformatics tools in order to extract target\nsequences from high-throughput DNA sequencing reads\n", "version": [ { "downloads": [ "https://github.com/mossmatters/HybPiper/archive/v1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://github.com/mossmatters/HybPiper/archive/v1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://github.com/mossmatters/HybPiper/archive/v2.1.8.tar.gz" ], "version": "2.1.8" } ] }, "hybrid-lambda": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "boost", "cppunit", "cxx", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://github.com/hybridLambda/hybrid-Lambda.git" ], "homepages": [ "https://github.com/hybridLambda/hybrid-Lambda" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "hybrid-lambda", "patches": [], "summary": "Hybrid-Lambda is a software package that can simulate gene trees within\na rooted species network or a rooted species tree under the coalescent\nprocess. The main feature of this program is that users can choose to\nuse the standard Kingman coalescent process, which produces bifurcating\ngenealogies, or two other Lambda coalescent processes, which produce\nmultifurcating genealogies. The other feature is that hybrid sim uses\nextended Newick formatted strings to make it easier to represent\nhybridization events between species.\n", "version": [ { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/hybridLambda/hybrid-Lambda.git" } ], "version": "develop" } ] }, "hybridsim": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "dramsim2", "gmake", "nvdimmsim" ], "downloads": [ "https://github.com/jimstevens2001/HybridSim/archive/v2.0.1.tar.gz", "https://github.com/jimstevens2001/HybridSim" ], "homepages": [ "https://github.com/jimstevens2001/HybridSim" ], "licenses": [], "maintainers": [ "jjwilke" ], "name": "hybridsim", "patches": [ "makefile.patch when @2.0.1" ], "summary": " HybridSim provides cycle-accurate simulation of a non-volatile memory\nsystem augmented with a DRAM based cache. It uses DRAMSim2 for the DRAM\nmodel and NVDIMMSim for the non-volatile memory model\n", "version": [ { "downloads": [ "https://github.com/jimstevens2001/HybridSim/archive/v2.0.1.tar.gz" ], "version": "2.0.1" } ] }, "hydra": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://www.mpich.org/static/downloads/4.2.1/hydra-4.2.1.tar.gz", "https://www.mpich.org/static/downloads/4.2.0/hydra-4.2.0.tar.gz", "https://www.mpich.org/static/downloads/4.1.1/hydra-4.1.1.tar.gz", "https://www.mpich.org/static/downloads/3.2/hydra-3.2.tar.gz" ], "homepages": [ "https://www.mpich.org" ], "licenses": [ "AGPL-3.0-or-later" ], "maintainers": [], "name": "hydra", "patches": [], "summary": "Hydra is a process management system for starting parallel jobs. Hydra\nis designed to natively work with existing launcher daemons (such as\nssh, rsh, fork), as well as natively integrate with resource management\nsystems (such as slurm, pbs, sge).\n", "version": [ { "downloads": [ "https://www.mpich.org/static/downloads/3.2/hydra-3.2.tar.gz" ], "version": "3.2" }, { "downloads": [ "https://www.mpich.org/static/downloads/4.1.1/hydra-4.1.1.tar.gz" ], "version": "4.1.1" }, { "downloads": [ "https://www.mpich.org/static/downloads/4.2.0/hydra-4.2.0.tar.gz" ], "version": "4.2.0" }, { "downloads": [ "https://www.mpich.org/static/downloads/4.2.1/hydra-4.2.1.tar.gz" ], "version": "4.2.1" } ] }, "hydrogen": { "alias": [], "categories": [ "ecp", "radiuss" ], "dependencies": [ "aluminum", "blas", "c", "cmake", "cray-libsci", "cuda", "cxx", "gmake", "half", "hip", "hipcub", "hsa-rocr-dev", "lapack", "llvm-amdgpu", "llvm-openmp", "mpi", "ninja", "veclibfort" ], "downloads": [ "https://github.com/LLNL/Elemental/archive/vdevelop.tar.gz", "https://github.com/LLNL/Elemental/archive/v1.5.3.tar.gz", "https://github.com/LLNL/Elemental/archive/v1.5.2.tar.gz", "https://github.com/LLNL/Elemental/archive/v1.5.1.tar.gz", "https://github.com/LLNL/Elemental.git" ], "homepages": [ "https://libelemental.org" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [ "bvanessen" ], "name": "hydrogen", "patches": [ "cmake-intel-mpi-escape-quotes-pr177.patch when @1.5.3" ], "summary": "Hydrogen: Distributed-memory dense and sparse-direct linear algebra and\noptimization library. Based on the Elemental library.\n", "version": [ { "downloads": [ "https://github.com/LLNL/Elemental/archive/v1.5.1.tar.gz" ], "version": "1.5.1" }, { "downloads": [ "https://github.com/LLNL/Elemental/archive/v1.5.2.tar.gz" ], "version": "1.5.2" }, { "downloads": [ "https://github.com/LLNL/Elemental/archive/v1.5.3.tar.gz" ], "version": "1.5.3" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/LLNL/Elemental.git" } ], "version": "develop" } ] }, "hypar": { "alias": [], "categories": [ "proxy-app", "ecp-proxy-app" ], "dependencies": [ "autoconf", "automake", "blas", "fftw", "gmake", "gnuconfig", "lapack", "libtool", "mpi", "scalapack" ], "downloads": [ "https://github.com/debog/hypar/archive/refs/tags/v4.1.tar.gz", "https://github.com/debog/hypar.git" ], "homepages": [ "https://hypar.github.io/" ], "licenses": [], "maintainers": [ "debog" ], "name": "hypar", "patches": [], "summary": " HyPar is a finite-difference algorithm to solve hyperbolic-parabolic\npartial differential equations (with source terms) on Cartesian grids.\nIt is a unified framework that can handle systems of PDEs with arbitrary\nnumber of spatial dimensions and solution components. It provides the\nspatial discretization and time integration functions, functions to read\nand write solutions from/to files, as well as functions required to\nsolve the system on parallel (MPI) platforms. The physical models define\nthe physics-specific functions such as the exact forms of the hyperbolic\nflux, parabolic flux, source terms, upwinding functions, etc.\n", "version": [ { "downloads": [ "https://github.com/debog/hypar/archive/refs/tags/v4.1.tar.gz" ], "version": "4.1" } ] }, "hyperfine": { "alias": [], "categories": [], "dependencies": [ "c", "rust" ], "downloads": [ "https://github.com/sharkdp/hyperfine/archive/refs/tags/v1.18.0.tar.gz", "https://github.com/sharkdp/hyperfine/archive/refs/tags/v1.17.0.tar.gz", "https://github.com/sharkdp/hyperfine/archive/refs/tags/v1.16.1.tar.gz", "https://github.com/sharkdp/hyperfine/archive/refs/tags/v1.14.0.tar.gz", "https://github.com/sharkdp/hyperfine/archive/refs/tags/v1.13.0.tar.gz", "https://github.com/sharkdp/hyperfine/archive/refs/tags/v1.12.0.tar.gz" ], "homepages": [ "https://github.com/sharkdp/hyperfine" ], "licenses": [ "Apache-2.0 AND MIT" ], "maintainers": [ "michaelkuhn" ], "name": "hyperfine", "patches": [], "summary": "A command-line benchmarking tool.\n", "version": [ { "downloads": [ "https://github.com/sharkdp/hyperfine/archive/refs/tags/v1.12.0.tar.gz" ], "version": "1.12.0" }, { "downloads": [ "https://github.com/sharkdp/hyperfine/archive/refs/tags/v1.13.0.tar.gz" ], "version": "1.13.0" }, { "downloads": [ "https://github.com/sharkdp/hyperfine/archive/refs/tags/v1.14.0.tar.gz" ], "version": "1.14.0" }, { "downloads": [ "https://github.com/sharkdp/hyperfine/archive/refs/tags/v1.16.1.tar.gz" ], "version": "1.16.1" }, { "downloads": [ "https://github.com/sharkdp/hyperfine/archive/refs/tags/v1.17.0.tar.gz" ], "version": "1.17.0" }, { "downloads": [ "https://github.com/sharkdp/hyperfine/archive/refs/tags/v1.18.0.tar.gz" ], "version": "1.18.0" } ] }, "hyperqueue": { "alias": [], "categories": [], "dependencies": [ "rust" ], "downloads": [ "https://github.com/It4innovations/hyperqueue/archive/refs/tags/vmain.tar.gz", "https://github.com/It4innovations/hyperqueue/archive/refs/tags/v0.12.0-rc1.tar.gz", "https://github.com/It4innovations/hyperqueue/archive/refs/tags/v0.11.0.tar.gz", "https://github.com/It4innovations/hyperqueue/archive/refs/tags/v0.10.0.tar.gz", "https://github.com/It4innovations/hyperqueue/archive/refs/tags/v0.9.0.tar.gz", "https://github.com/It4innovations/hyperqueue" ], "homepages": [ "https://it4innovations.github.io/hyperqueue" ], "licenses": [ "MIT" ], "maintainers": [ "Kobzol", "Nortamo" ], "name": "hyperqueue", "patches": [], "summary": "Scheduler for sub-node tasks for HPC systems with batch scheduling\n", "version": [ { "downloads": [ "https://github.com/It4innovations/hyperqueue/archive/refs/tags/v0.10.0.tar.gz" ], "version": "0.10.0" }, { "downloads": [ "https://github.com/It4innovations/hyperqueue/archive/refs/tags/v0.11.0.tar.gz" ], "version": "0.11.0" }, { "downloads": [ "https://github.com/It4innovations/hyperqueue/archive/refs/tags/v0.12.0-rc1.tar.gz" ], "version": "0.12.0-rc1" }, { "downloads": [ "https://github.com/It4innovations/hyperqueue/archive/refs/tags/v0.9.0.tar.gz" ], "version": "0.9.0" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/It4innovations/hyperqueue" } ], "version": "main" } ] }, "hyperscan": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "cmake", "cxx", "gmake", "ninja", "pcre", "ragel" ], "downloads": [ "https://github.com/intel/hyperscan/archive/v5.2.1.tar.gz" ], "homepages": [ "https://www.hyperscan.io/" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "hyperscan", "patches": [], "summary": "High-performance regular expression matching library.\n", "version": [ { "downloads": [ "https://github.com/intel/hyperscan/archive/v5.2.1.tar.gz" ], "version": "v5.2.1" } ] }, "hyphen": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://downloads.sourceforge.net/hunspell/hyphen-master.tar.gz", "https://downloads.sourceforge.net/hunspell/hyphen-2.8.8.tar.gz", "https://github.com/hunspell/hyphen.git" ], "homepages": [ "https://hunspell.github.io" ], "licenses": [], "maintainers": [], "name": "hyphen", "patches": [], "summary": "A library of text hyphenation.\n", "version": [ { "downloads": [ "https://downloads.sourceforge.net/hunspell/hyphen-2.8.8.tar.gz" ], "version": "2.8.8" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/hunspell/hyphen.git" } ], "version": "master" } ] }, "hyphy": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "curl", "cxx", "gmake", "ninja", "openmpi" ], "downloads": [ "https://github.com/veg/hyphy/archive/2.5.51hf.tar.gz", "https://github.com/veg/hyphy/archive/2.3.14.tar.gz" ], "homepages": [ "https://www.hyphy.org/" ], "licenses": [], "maintainers": [], "name": "hyphy", "patches": [], "summary": "HyPhy: Hypothesis testing using Phylogenies\n", "version": [ { "downloads": [ "https://github.com/veg/hyphy/archive/2.3.14.tar.gz" ], "version": "2.3.14" }, { "downloads": [ "https://github.com/veg/hyphy/archive/2.5.51hf.tar.gz" ], "version": "2.5.51hf" } ] }, "hypre": { "alias": [], "categories": [ "e4s", "radiuss" ], "dependencies": [ "blas", "c", "caliper", "cmake", "cuda", "cxx", "fortran", "gmake", "gnuconfig", "hip", "hipblas", "hsa-rocr-dev", "intel-oneapi-compilers", "intel-oneapi-dpl", "intel-oneapi-mkl", "lapack", "llvm-amdgpu", "magma", "mpi", "ninja", "rocblas", "rocprim", "rocrand", "rocsolver", "rocsparse", "rocthrust", "superlu-dist", "umpire" ], "downloads": [ "https://github.com/hypre-space/hypre/archive/v2.14.0.tar.gz", "https://github.com/hypre-space/hypre.git" ], "homepages": [ "https://llnl.gov/casc/hypre" ], "licenses": [ "Apache-2.0 OR MIT" ], "maintainers": [ "balay", "liruipeng", "oseikuffuor1", "rfalgout", "victorapm", "waynemitchell" ], "name": "hypre", "patches": [ "https://github.com/hypre-space/hypre/pull/1394.patch?full_index=1 when @3.0.0+rocm", "hypre30000-tpls+mixedprec.patch when @3.0.0", "ij_gptune.patch when @2.19.0+gptune", "ibm-ppc64le.patch when @:2.11.1", "darwin-shared-libs-for-hypre-2.13.0.patch when @2.13.0+shared platform=darwin", "darwin-shared-libs-for-hypre-2.14.0.patch when @2.14.0+shared platform=darwin", "superlu-dist-link-2.15.0.patch when @2.15:2.16.0+superlu-dist", "superlu-dist-link-2.14.0.patch when @:2.14.0+superlu-dist", "hypre21800-compat.patch when @2.18.0", "detect-compiler.patch when @2.15.0:2.20.0", "hypre-precision-fix.patch when precision=single", "hypre-precision-fix.patch when precision=longdouble" ], "summary": "Hypre is a library of high performance preconditioners that features\nparallel multigrid methods for both structured and unstructured grid\nproblems.\n", "version": [ { "downloads": [ "http://computing.llnl.gov/project/linear_solvers/download/hypre-2.10.0b.tar.gz" ], "version": "2.10.0b" }, { 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"downloads": [ "https://github.com/hypre-space/hypre/archive/v2.17.0.tar.gz" ], "version": "2.17.0" }, { "downloads": [ "https://github.com/hypre-space/hypre/archive/v2.18.0.tar.gz" ], "version": "2.18.0" }, { "downloads": [ "https://github.com/hypre-space/hypre/archive/v2.18.1.tar.gz" ], "version": "2.18.1" }, { "downloads": [ "https://github.com/hypre-space/hypre/archive/v2.18.2.tar.gz" ], "version": "2.18.2" }, { "downloads": [ "https://github.com/hypre-space/hypre/archive/v2.19.0.tar.gz" ], "version": "2.19.0" }, { "downloads": [ "https://github.com/hypre-space/hypre/archive/v2.20.0.tar.gz" ], "version": "2.20.0" }, { "downloads": [ "https://github.com/hypre-space/hypre/archive/v2.21.0.tar.gz" ], "version": "2.21.0" }, { "downloads": [ "https://github.com/hypre-space/hypre/archive/v2.22.0.tar.gz" ], "version": "2.22.0" }, { "downloads": [ "https://github.com/hypre-space/hypre/archive/v2.22.1.tar.gz" ], "version": "2.22.1" }, { "downloads": [ 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performance preconditioners that features\nparallel multigrid methods for both structured and unstructured grid\nproblems.\n", "version": [ { "downloads": [ "https://github.com/hypre-space/hypre/archive/v2.22.0.tar.gz" ], "version": "2.22.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/hypre-space/hypre.git" } ], "version": "develop" } ] }, "hztool": { "alias": [], "categories": [ "hep" ], "dependencies": [ "c", "fortran", "gmake", "gnuconfig" ], "downloads": [ "https://hztool.hepforge.org/downloads/?f=hztool-4.3.2.tar.gz", "https://hztool.hepforge.org/downloads/?f=hztool-4.3.tar.gz", "https://hztool.hepforge.org/downloads/?f=hztool-4.2.tar.gz", "https://hztool.hepforge.org/downloads/?f=hztool-4.1.tar.gz", "https://hztool.hepforge.org/downloads/?f=hztool-4.0.tar.gz" ], "homepages": [ "https://hztool.hepforge.org" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [ "wdconinc" ], "name": "hztool", "patches": [], "summary": 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The target platforms are GNU/Linux and BSD\noperating systems, our code is Free and Open Source Software (FOSS)\nunder the BSD license. i3 is primarily targeted at advanced users and\ndevelopers.\n", "version": [ { "downloads": [ "https://github.com/i3/i3/archive/4.14.1.tar.gz" ], "version": "4.14.1" } ] }, "ibm-databroker": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "libevent", "ninja", "py-setuptools", "python", "python-venv", "redis" ], "downloads": [ "https://github.com/IBM/data-broker/archive/master.tar.gz", "https://github.com/IBM/data-broker/archive/0.7.0.tar.gz", "https://github.com/IBM/data-broker/archive/0.6.1.tar.gz", "https://github.com/IBM/data-broker/archive/0.6.0.tar.gz", "https://github.com/IBM/data-broker" ], "homepages": [ "https://github.com/IBM/data-broker" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "bhatiaharsh" ], "name": "ibm-databroker", "patches": [ "fixes_in_v0.6.1.patch when @0.6.1", "fixes_in_v0.7.0.patch when @0.7.0" ], "summary": "The Data Broker (DBR) is a distributed, in-memory container of key-value\nstores enabling applications in a workflow to exchange data through one\nor more shared namespaces. 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It displays a wire-frame rotating\npolyhedron, with hidden lines removed, or a solid-fill polyhedron with\nhidden faces removed.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/ico-1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://www.x.org/archive/individual/app/ico-1.0.6.tar.gz" ], "version": "1.0.6" } ] }, "icon": { "alias": [], "categories": [], "dependencies": [ "blas", "c", "cmake", "cuda", "cxx", "eccodes", "findutils", "fortran", "gmake", "gnuconfig", "lapack", "libfyaml", "libxml2", "mpi", "netcdf-c", "netcdf-fortran", "perl", "python", "serialbox" ], "downloads": [ "https://gitlab.dkrz.de/icon/icon-model/-/archive/icon-2025.04-public/icon-model-icon-2025.04-public.tar.gz", "https://gitlab.dkrz.de/icon/icon-model/-/archive/icon-2024.10-public/icon-model-icon-2024.10-public.tar.gz", "https://gitlab.dkrz.de/icon/icon-model/-/archive/icon-2024.07-public/icon-model-icon-2024.07-public.tar.gz", "https://gitlab.dkrz.de/icon/icon-model/-/archive/icon-2024.01-1-public/icon-model-icon-2024.01-1-public.tar.gz", "https://gitlab.dkrz.de/icon/icon-model/-/archive/icon-2024.01-public/icon-model-icon-2024.01-public.tar.gz", "https://gitlab.dkrz.de/icon/icon-model.git" ], "homepages": [ "https://www.icon-model.org" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "Try2Code", "skosukhin" ], "name": "icon", "patches": [], "summary": "ICON - is a modeling framework for weather, climate, and environmental\nprediction. 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Whereas the kernel (Linux)\ngoverns access to hardware, memory, filesystems, and the privileges for\naccessing these resources, the C library is responsible for providing\nthe actual C function interfaces userspace applications see, and for\nconstructing higher-level buffered stdio, memory allocation management,\nthread creation and synchronization operations, and so on using the\nlower-level interfaces the kernel provides, as well as for implementing\npure library routines of the C language like strstr, snprintf, strtol,\nexp, sqrt, etc. Musl is a new general-purpose implementation of the C\nlibrary. 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It\noutputs optimized vertex buffers that you can render anytime in your\n3D-pipeline enabled application. It is fast, portable, renderer agnostic\nand self-contained (no external dependencies).\n", "version": [ { "downloads": [ "https://github.com/ocornut/imgui/archive/refs/tags/v1.85.tar.gz" ], "version": "1.85" }, { "downloads": [ "https://github.com/ocornut/imgui/archive/refs/tags/v1.90.6.tar.gz" ], "version": "1.90.6" } ] }, "imlib2": { "alias": [], "categories": [], "dependencies": [ "bzip2", "c", "freetype", "giflib", "gmake", "gnuconfig", "libid3tag", "libjpeg-turbo", "libpng", "libtiff", "libxext", "pkgconfig" ], "downloads": [ "https://prdownloads.sourceforge.net/enlightenment/imlib2-1.7.1.tar.bz2", "https://prdownloads.sourceforge.net/enlightenment/imlib2-1.7.0.tar.bz2", "https://prdownloads.sourceforge.net/enlightenment/imlib2-1.6.1.tar.bz2", "https://prdownloads.sourceforge.net/enlightenment/imlib2-1.6.0.tar.bz2", "https://prdownloads.sourceforge.net/enlightenment/imlib2-1.5.1.tar.bz2" ], "homepages": [ "https://sourceforge.net/projects/enlightenment/" ], "licenses": [ "Imlib2" ], "maintainers": [ "TheQueasle" ], "name": "imlib2", "patches": [], "summary": " Library that does image file loading and saving as well as rendering,\nmanipulation, arbitrary polygon support\n", "version": [ { "downloads": [ "https://prdownloads.sourceforge.net/enlightenment/imlib2-1.5.1.tar.bz2" ], "version": "1.5.1" }, { "downloads": [ "https://prdownloads.sourceforge.net/enlightenment/imlib2-1.6.0.tar.bz2" ], "version": "1.6.0" }, { "downloads": [ "https://prdownloads.sourceforge.net/enlightenment/imlib2-1.6.1.tar.bz2" ], "version": "1.6.1" }, { "downloads": [ "https://prdownloads.sourceforge.net/enlightenment/imlib2-1.7.0.tar.bz2" ], "version": "1.7.0" }, { "downloads": [ "https://prdownloads.sourceforge.net/enlightenment/imlib2-1.7.1.tar.bz2" ], "version": "1.7.1" } ] }, "imod": { "alias": [], "categories": [], "dependencies": [ "c", "cuda", "cxx", "fftw", "fortran", "glu", "gmake", "hdf5", "java", "jpeg", "libtiff", "python", "qt", "tcsh" ], "downloads": [], "homepages": [ "https://bio3d.colorado.edu/imod/" ], "licenses": [ "GPL-2" ], "maintainers": [ "Markus92" ], "name": "imod", "patches": [], "summary": "IMOD is a set of image processing, modeling and display programs used\nfor tomographic reconstruction and for 3D reconstruction of EM serial\nsections and optical sections. The package contains tools for assembling\nand aligning data within multiple types and sizes of image stacks,\nviewing 3-D data from any orientation, and modeling and display of the\nimage files.\n", "version": [ { "downloads": [ [] ], "version": "5.2.3" } ] }, "imp": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "cmake", "cxx", "eigen", "gmake", "hdf5", "ninja", "python", "swig" ], "downloads": [ "https://github.com/salilab/imp/archive/2.8.0.tar.gz" ], "homepages": [ "https://integrativemodeling.org" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "imp", "patches": [], "summary": "IMP, the Integrative Modeling Platform.\n", "version": [ { "downloads": [ "https://github.com/salilab/imp/archive/2.8.0.tar.gz" ], "version": "2.8.0" } ] }, "impalajit": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "llvm", "ninja", "pkgconfig", "z3" ], "downloads": [], "homepages": [ "https://github.com/manuel-fasching/ImpalaJIT/blob/master/README.md" ], "licenses": [ "MIT-0" ], "maintainers": [ "Thomas-Ulrich", "ravil-mobile" ], "name": "impalajit", "patches": [], "summary": "A lightweight JIT compiler for flexible data access in simulation\napplications. impalajit@llvm is enhanced with LLVM JIT. This means that\nimpalajit@llvm is supposed to work on any architecture supported by\nllvm, contrary to the impalajit@main package which is restricted to x86\narchitectures.This comes at the price of extra dependencies. Impala acts\nas a backend for `easi` project.\n", "version": [ { "downloads": [ [] ], "version": "llvm" }, { "downloads": [ [] ], "version": "llvm-1.0.0" }, { "branch": "main", "version": "main" } ] }, "improved-rdock": { "alias": [], "categories": [], "dependencies": [ "c", "cppunit", "cxx", "gmake", "mpi", "openbabel", "popt", "py-numpy" ], "downloads": [ "https://github.com/clinfo/improved_rDock.git" ], "homepages": [ "https://github.com/clinfo/improved_rDock" ], "licenses": [ "LGPL-3.0-or-later" ], "maintainers": [], "name": "improved-rdock", "patches": [ "rdock_ld.patch", "rdock_newcxx.patch", "rdock_useint.patch", "rdock_erase.patch", "rdock_python3.patch when ^python@3:", "rdock_loop.patch when target=aarch64:", "rdock_const.patch when %fj", "rdock_const2.patch when %fj" ], "summary": "Improved version of rDock. rDock is a fast and versatile Open Source\ndocking program that can be used to dock small molecules against\nproteins and nucleic acids. The original version is found at the\nfollowing URL:\nhttps://sourceforge.net/projects/rdock/files/rDock_2013.1_src.tar.gz\n", "version": [ { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/clinfo/improved_rDock.git" } ], "version": "main" } ] }, "impute2": { "alias": [], "categories": [], "dependencies": [], "downloads": [ "https://mathgen.stats.ox.ac.uk/impute/impute_v2.3.2_x86_64_dynamic.tgz" ], "homepages": [ "https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#home" ], "licenses": [], "maintainers": [], "name": "impute2", "patches": [], "summary": "IMPUTE2 is a genotype imputation and haplotype phasing program based on\nideas from Howie et al. 2009.\n", "version": [ { "downloads": [ "https://mathgen.stats.ox.ac.uk/impute/impute_v2.3.2_x86_64_dynamic.tgz" ], "version": "2.3.2" } ] }, "indicators": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/p-ranav/indicators/archive/refs/tags/v2.3.tar.gz", "https://github.com/p-ranav/indicators.git" ], "homepages": [ "https://github.com/p-ranav/indicators" ], "licenses": [ "MIT" ], "maintainers": [ "stephenswat" ], "name": "indicators", "patches": [], "summary": "Activity indicators for modern C++.\n", "version": [ { "downloads": [ "https://github.com/p-ranav/indicators/archive/refs/tags/v2.3.tar.gz" ], "version": "2.3" } ] }, "infernal": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "mpi" ], "downloads": [ "http://eddylab.org/infernal/infernal-1.1.5.tar.gz", "http://eddylab.org/infernal/infernal-1.1.4.tar.gz", "http://eddylab.org/infernal/infernal-1.1.3.tar.gz", "http://eddylab.org/infernal/infernal-1.1.2.tar.gz" ], "homepages": [ "http://eddylab.org/infernal/" ], "licenses": [], "maintainers": [], "name": "infernal", "patches": [], "summary": "Infernal (INFERence of RNA ALignment) is for searching DNA sequence\ndatabases for RNA structure and sequence similarities. It is an\nimplementation of a special case of profile stochastic context-free\ngrammars called covariance models (CMs).\n", "version": [ { "downloads": [ "http://eddylab.org/infernal/infernal-1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "http://eddylab.org/infernal/infernal-1.1.3.tar.gz" ], "version": "1.1.3" }, { "downloads": [ "http://eddylab.org/infernal/infernal-1.1.4.tar.gz" ], "version": "1.1.4" }, { "downloads": [ "http://eddylab.org/infernal/infernal-1.1.5.tar.gz" ], "version": "1.1.5" } ] }, "iniparser": { "alias": [], "categories": [], "dependencies": [ "c", "gmake" ], "downloads": [ "https://github.com/ndevilla/iniparser/archive/v4.2.tar.gz", "https://github.com/ndevilla/iniparser/archive/v4.1.tar.gz", "https://github.com/ndevilla/iniparser/archive/v4.0.tar.gz", "https://github.com/ndevilla/iniparser/archive/v3.2.tar.gz", "https://github.com/ndevilla/iniparser/archive/v3.1.tar.gz" ], "homepages": [ "http://ndevilla.free.fr/iniparser/" ], "licenses": [ "MIT" ], "maintainers": [], "name": "iniparser", "patches": [], "summary": "This modules offers parsing of ini files from the C level.\n", "version": [ { "downloads": [ "https://github.com/ndevilla/iniparser/archive/v3.1.tar.gz" ], "version": "3.1" }, { "downloads": [ "https://github.com/ndevilla/iniparser/archive/v3.2.tar.gz" ], "version": "3.2" }, { "downloads": [ "https://github.com/ndevilla/iniparser/archive/v4.0.tar.gz" ], "version": "4.0" }, { "downloads": [ "https://github.com/ndevilla/iniparser/archive/v4.1.tar.gz" ], "version": "4.1" }, { "downloads": [ "https://github.com/ndevilla/iniparser/archive/v4.2.tar.gz" ], "version": "4.2" } ] }, "inputproto": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/proto/inputproto-2.3.2.tar.gz" ], "homepages": [ "https://cgit.freedesktop.org/xorg/proto/inputproto" ], "licenses": [], "maintainers": [], "name": "inputproto", "patches": [], "summary": "X Input Extension. This extension defines a protocol to provide\nadditional input devices management such as graphic tablets.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/proto/inputproto-2.3.2.tar.gz" ], "version": "2.3.2" } ] }, "intel-gpu-tools": { "alias": [], "categories": [], "dependencies": [ "bison", "c", "cairo", "flex", "glib", "gmake", "gnuconfig", "kmod", "libdrm", "libpciaccess", "libunwind", "pkgconfig", "python", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/app/intel-gpu-tools-1.20.tar.gz", "https://www.x.org/archive/individual/app/intel-gpu-tools-1.16.tar.gz" ], "homepages": [ "https://cgit.freedesktop.org/xorg/app/intel-gpu-tools/" ], "licenses": [], "maintainers": [], "name": "intel-gpu-tools", "patches": [], "summary": "Intel GPU Tools is a collection of tools for development and testing of\nthe Intel DRM driver. There are many macro-level test suites that get\nused against the driver, including xtest, rendercheck, piglit, and\noglconform, but failures from those can be difficult to track down to\nkernel changes, and many require complicated build procedures or\nspecific testing environments to get useful results. Therefore, Intel\nGPU Tools includes low-level tools and tests specifically for\ndevelopment and testing of the Intel DRM Driver.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/intel-gpu-tools-1.16.tar.gz" ], "version": "1.16" }, { "downloads": [ "https://www.x.org/archive/individual/app/intel-gpu-tools-1.20.tar.gz" ], "version": "1.20" } ] }, "intel-gtpin": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "patchelf" ], "downloads": [ "https://downloadmirror.intel.com/856505/external-release-gtpin-4.5.0-linux.tar.xz", "https://downloadmirror.intel.com/844580/external-release-gtpin-4.4-linux.tar.xz", "https://downloadmirror.intel.com/830027/external-release-gtpin-4.3-linux.tar.xz", "https://downloadmirror.intel.com/816037/external-release-gtpin-4.0-linux.tar.xz", "https://downloadmirror.intel.com/793592/external-release-gtpin-3.7-linux.tar.xz", "https://downloadmirror.intel.com/777295/external-release-gtpin-3.4-linux.tar.xz", "https://downloadmirror.intel.com/762747/external-release-gtpin-3.2.2-linux.tar.xz", "https://downloadmirror.intel.com/730598/external-release-gtpin-3.0-linux.tar.xz", "https://downloadmirror.intel.com/686383/external-gtpin-2.19-linux.tar.xz", "https://downloadmirror.intel.com/682776/external-gtpin-2.13-linux.tar.bz2", "https://downloadmirror.intel.com/682777/external-gtpin-2.12-linux.tar.bz2", "https://downloadmirror.intel.com/682779/external-gtpin-2.11.4-linux.tar.bz2" ], "homepages": [ "https://www.intel.com/content/www/us/en/developer/articles/tool/gtpin.html" ], "licenses": [ "MIT" ], "maintainers": [ "rashawnlk" ], "name": "intel-gtpin", "patches": [], "summary": "Intel(R) GtPin is a dynamic binary instrumentation framework for GEN\n(Intel(R) graphics) Architecture. It is a unique SW platform for\nprofiling a code running on GEN Execution Units (EUs). GTPin includes a\nbinary instrumentation engine for Intel(R) GPUs EUs, along with an API\nfor developing analysis tools, and many sample tools. GTPin allows you\nto capture a range of dynamic profiling data at the finest granularity\nof the specific GPU EU instruction. GTPin supports both compute and\ngraphics workloads. It operates on regular, real-world GPU applications,\nas well as on pre-captured API streams. The technology enables fast and\naccurate dynamic analysis of the code that is executing on the GPU EUs.\nGTPin opens up new opportunities to perform dynamic, low level workload\nand HW analysis on an Intel(R) GPU, with greater efficiency than other\ncurrent solutions. Some of the GTPin capabilities are integrated into\nIntel(R) VTune(TM) Profiler, Intel(R) Advisor, and the Intel(R) Graphics\nPerformance Analyzers (Intel(R) GPA). GTPin is available, along with a\nset of analysis tools based on the GTPin framework. It also enables more\nadvanced users to develop their own analysis tools. GTPin can analyze\nany GPU application. It also collects dynamic profiling data which the\napplication executes on the GPU.\n", "version": [ { "downloads": [ "https://downloadmirror.intel.com/682779/external-gtpin-2.11.4-linux.tar.bz2" ], "version": "2.11.4" }, { "downloads": [ "https://downloadmirror.intel.com/682777/external-gtpin-2.12-linux.tar.bz2" ], "version": "2.12" }, { "downloads": [ "https://downloadmirror.intel.com/682776/external-gtpin-2.13-linux.tar.bz2" ], "version": "2.13" }, { "downloads": [ "https://downloadmirror.intel.com/686383/external-gtpin-2.19-linux.tar.xz" ], "version": "2.19" }, { "downloads": [ "https://downloadmirror.intel.com/730598/external-release-gtpin-3.0-linux.tar.xz" ], "version": "3.0" }, { "downloads": [ "https://downloadmirror.intel.com/762747/external-release-gtpin-3.2.2-linux.tar.xz" ], "version": "3.2.2" }, { "downloads": [ "https://downloadmirror.intel.com/777295/external-release-gtpin-3.4-linux.tar.xz" ], "version": "3.4" }, { "downloads": [ "https://downloadmirror.intel.com/793592/external-release-gtpin-3.7-linux.tar.xz" ], "version": "3.7" }, { "downloads": [ "https://downloadmirror.intel.com/816037/external-release-gtpin-4.0-linux.tar.xz" ], "version": "4.0" }, { "downloads": [ "https://downloadmirror.intel.com/830027/external-release-gtpin-4.3-linux.tar.xz" ], "version": "4.3" }, { "downloads": [ "https://downloadmirror.intel.com/844580/external-release-gtpin-4.4-linux.tar.xz" ], "version": "4.4" }, { "downloads": [ "https://downloadmirror.intel.com/856505/external-release-gtpin-4.5.0-linux.tar.xz" ], "version": "4.5.0" } ] }, "intel-llvm": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "ninja" ], "downloads": [ "https://github.com/intel/llvm.git" ], "homepages": [ "https://github.com/intel/llvm" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "rscohn2" ], "name": "intel-llvm", "patches": [], "summary": "Intel's version of the LLVM compiler.\n", "version": [ { "repositories": [ { "branch": "sycl", "type": "git", "url": "https://github.com/intel/llvm.git" } ], "version": "sycl" } ] }, "intel-mlc": { "alias": [], "categories": [], "dependencies": [], "downloads": [ "https://downloadmirror.intel.com/834254/mlc_v3.11b.tgz", "https://downloadmirror.intel.com/822971/mlc_v3.11a.tgz", "https://downloadmirror.intel.com/793041/mlc_v3.11.tgz" ], "homepages": [ "https://www.intel.com/content/www/us/en/developer/articles/tool/intelr-memory-latency-checker.html" ], "licenses": [], "maintainers": [], "name": "intel-mlc", "patches": [], "summary": "Intel\u00ae Memory Latency Checker (Intel\u00ae MLC) is a tool used to measure\nmemory latencies and b/w, and how they change with increasing load on\nthe system. It also provides several options for more fine-grained\ninvestigation where b/w and latencies from a specific set of cores to\ncaches or memory can be measured as well.\n", "version": [ { "downloads": [ "https://downloadmirror.intel.com/793041/mlc_v3.11.tgz" ], "version": "3.11" }, { "downloads": [ "https://downloadmirror.intel.com/822971/mlc_v3.11a.tgz" ], "version": "3.11a" }, { "downloads": [ "https://downloadmirror.intel.com/834254/mlc_v3.11b.tgz" ], "version": "3.11b" } ] }, "intel-mpi-benchmarks": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "mpi" ], "downloads": [ "https://github.com/intel/mpi-benchmarks/archive/IMB-v2021.3.tar.gz" ], "homepages": [ "https://software.intel.com/en-us/articles/intel-mpi-benchmarks" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "carsonwoods" ], "name": "intel-mpi-benchmarks", "patches": [ "add_const.patch when @2019", "reorder_benchmark_macros.patch when @2019.1:2019.6" ], "summary": "Intel MPI Benchmarks provides a set of elementary benchmarks that\nconform to MPI-1, MPI-2, and MPI-3 standard. You can run all of the\nsupported benchmarks, or a subset specified in the command line using\none executable file. Use command-line parameters to specify various\nsettings, such as time measurement, message lengths, and selection of\ncommunicators. 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Also includes libxed-ild, a\nlightweight library for decoding the length of an instruction.\n", "version": [ { "repositories": [ { "commit": "40125558530137444b4ee6fd26b445bfa105b543", "type": "git", "url": "https://github.com/intelxed/xed.git" } ], "version": "11.2.0" }, { "repositories": [ { "commit": "5976632eeaaaad7890c2109d0cfaf4012eaca3b8", "type": "git", "url": "https://github.com/intelxed/xed.git" } ], "version": "12.0.1" }, { "repositories": [ { "commit": "ef19f00de14a9c2c253c1c9b1119e1617280e3f2", "type": "git", "url": "https://github.com/intelxed/xed.git" } ], "version": "2022.04.17" }, { "repositories": [ { "commit": "1ce1036aa4ab280f9a498136b37421ab390e42db", "type": "git", "url": "https://github.com/intelxed/xed.git" } ], "version": "2022.08.11" }, { "repositories": [ { "commit": "9fc12ab6c0ba7a9eaadb20135369b4b4107fa670", "type": "git", "url": "https://github.com/intelxed/xed.git" } ], "version": "2022.10.11" }, { "repositories": [ { "commit": "a3055cd0209f5c63c88e280bbff9579b1e2942e2", "type": "git", "url": "https://github.com/intelxed/xed.git" } ], "version": "2023.04.16" }, { "repositories": [ { "commit": "4dc77137f651def2ece4ac0416607b215c18e6e4", "type": "git", "url": "https://github.com/intelxed/xed.git" } ], "version": "2023.06.07" }, { "repositories": [ { "commit": "539a6a349cf7538a182ed3ee1f48bb9317eb185f", "type": "git", "url": "https://github.com/intelxed/xed.git" } ], "version": "2023.07.09" }, { "repositories": [ { "commit": "01a6da8090af84cd52f6c1070377ae6e885b078f", "type": "git", "url": "https://github.com/intelxed/xed.git" } ], "version": "2023.08.21" }, { "repositories": [ { "commit": "d7d46c73fb04a1742e99c9382a4acb4ed07ae272", "type": "git", "url": "https://github.com/intelxed/xed.git" } ], "version": "2023.10.11" }, { "repositories": [ { "commit": "d08a6f66f780a685f26322960cd3ae297dbad931", "type": "git", "url": "https://github.com/intelxed/xed.git" } ], "version": "2024.02.22" }, { "repositories": [ { "commit": "6d87b5481aa53b5ab1fc2b5a5622759c46746bf9", "type": "git", "url": "https://github.com/intelxed/xed.git" } ], "version": "2024.04.01" }, { "repositories": [ { "commit": "7e88c3e00274a10daa6b9d053decc057f65aa0ec", "type": "git", "url": "https://github.com/intelxed/xed.git" } ], "version": "2024.05.20" }, { "repositories": [ { "commit": "ea330dbdf42837029ddd8c690729fceb6e7f5e42", "type": "git", "url": "https://github.com/intelxed/xed.git" } ], "version": "2024.08.15" }, { "repositories": [ { "commit": "d4d502003bfff51c55c2808804301a62878d7cc8", "type": "git", "url": "https://github.com/intelxed/xed.git" } ], "version": "2024.11.04" }, { "repositories": [ { "commit": "1bdc793f5f64cf207f6776f4c0e442e39fa47903", "type": "git", "url": "https://github.com/intelxed/xed.git" } ], "version": "2025.03.02" }, { "repositories": [ { "commit": "dc6bdbe036515c7ef55d3b2d50bafc5232bfe534", "type": "git", "url": "https://github.com/intelxed/xed.git" } ], "version": "2025.06.08" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/intelxed/xed.git" } ], "version": "main" } ] }, "interproscan": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "java", "maven", "perl", "perl-cgi", "perl-db-file", "perl-io-string", "perl-io-stringy", "perl-mailtools", "perl-xml-parser", "perl-xml-quote", "python" ], "downloads": [ "https://github.com/ebi-pf-team/interproscan/archive/5.63-95.0.tar.gz", "https://github.com/ebi-pf-team/interproscan/archive/5.61-93.0.tar.gz", "https://github.com/ebi-pf-team/interproscan/archive/5.56-89.0.tar.gz", "https://github.com/ebi-pf-team/interproscan/archive/5.38-76.0.tar.gz", "https://github.com/ebi-pf-team/interproscan/archive/5.36-75.0.tar.gz", "ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/4/RELEASE/4.8/iprscan_v4.8.tar.gz" ], "homepages": [ "https://www.ebi.ac.uk/interpro/interproscan.html" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "snehring" ], "name": "interproscan", "patches": [ "large-gid.patch when @5:", "web-pom.patch when @5:", "non-interactive.patch when @:4.8", "ps_scan.patch when @:4.8" ], "summary": "InterProScan is the software package that allows sequences (protein and\nnucleic) to be scanned against InterPro's signatures. Signatures are\npredictive models, provided by several different databases, that make up\nthe InterPro consortium. By default this does not download all the\ndatabases you likely want, you'll either want to build with +databases\nor download the data archive for the version you installed to a separate\nlocation and modify interproscan.properties\n", "version": [ { "downloads": [ "ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/4/RELEASE/4.8/iprscan_v4.8.tar.gz" ], "version": "4.8" }, { "downloads": [ "https://github.com/ebi-pf-team/interproscan/archive/5.36-75.0.tar.gz" ], "version": "5.36-75.0" }, { "downloads": [ "https://github.com/ebi-pf-team/interproscan/archive/5.38-76.0.tar.gz" ], "version": "5.38-76.0" }, { "downloads": [ "https://github.com/ebi-pf-team/interproscan/archive/5.56-89.0.tar.gz" ], "version": "5.56-89.0" }, { "downloads": [ "https://github.com/ebi-pf-team/interproscan/archive/5.61-93.0.tar.gz" ], "version": "5.61-93.0" }, { "downloads": [ "https://github.com/ebi-pf-team/interproscan/archive/5.63-95.0.tar.gz" ], "version": "5.63-95.0" } ] }, "intltool": { "alias": [], "categories": [], "dependencies": [ "gmake", "gnuconfig", "perl", "perl-xml-parser" ], "downloads": [ "https://launchpad.net/intltool/trunk/0.51.0/+download/intltool-0.51.0.tar.gz" ], "homepages": [ "https://freedesktop.org/wiki/Software/intltool/" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "intltool", "patches": [ "https://launchpadlibrarian.net/216052398/intltool-perl-5.22.patch" ], "summary": "intltool is a set of tools to centralize translation of many different\nfile formats using GNU gettext-compatible PO files.\n", "version": [ { "downloads": [ "https://launchpad.net/intltool/trunk/0.51.0/+download/intltool-0.51.0.tar.gz" ], "version": "0.51.0" } ] }, "ioapi": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "mpi", "netcdf-c", "netcdf-fortran", "sed" ], "downloads": [ "https://github.com/cjcoats/ioapi-3.2.git" ], "homepages": [ "https://www.cmascenter.org/ioapi/" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [ "omsai" ], "name": "ioapi", "patches": [], "summary": "Models-3/EDSS Input/Output Applications Programming Interface.\n", "version": [ { "branch": "3.2-develop", "repositories": [ { "branch": "3.2-develop", "type": "git", "url": "https://github.com/cjcoats/ioapi-3.2.git" } ], "version": "3.2-develop" }, { "repositories": [ { "commit": "4017280cc656993a5be50f0da9287a56166da22b", "type": "git", "url": "https://github.com/cjcoats/ioapi-3.2.git" } ], "version": "3.2.20200420" }, { "repositories": [ { "commit": "6ebb47e96db3b641af63ee5f853c943b596a1268", "type": "git", "url": "https://github.com/cjcoats/ioapi-3.2.git" } ], "version": "3.2.20200714" }, { "repositories": [ { "commit": "ef5d5f4e112c249b593b19426421f25d79ae094b", "type": "git", "url": "https://github.com/cjcoats/ioapi-3.2.git" } ], "version": "3.2.20200828" }, { "branch": "4.0-develop", "repositories": [ { "branch": "4.0-develop", "type": "git", "url": "https://github.com/cjcoats/ioapi-3.2.git" } ], "version": "4.0-develop" } ] }, "ior": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "hdf5", "libtool", "lustre", "m4", "mpi", "parallel-netcdf" ], "downloads": [ "https://github.com/hpc/ior/archive/develop.tar.gz", "https://github.com/hpc/ior/archive/4.0.0.tar.gz", "https://github.com/hpc/ior/archive/3.3.0.tar.gz", "https://github.com/hpc/ior/archive/3.3.0rc1.tar.gz", "https://github.com/hpc/ior/archive/3.2.1.tar.gz", "https://github.com/hpc/ior/archive/3.2.0.tar.gz", "https://github.com/hpc/ior/archive/3.0.1.tar.gz" ], "homepages": [ "https://github.com/hpc/ior" ], "licenses": [], "maintainers": [], "name": "ior", "patches": [ "https://github.com/hpc/ior/commit/1dbca5c293f95074f9887ddb2043fa984670fb4d.patch?full_index=1 when @3.2.0+hdf5", "https://github.com/glennklockwood/ior/commit/e49476be64d4100c2da662ea415f327348b3d11d.patch?full_index=1 when +lustre" ], "summary": "The IOR software is used for benchmarking parallel file systems using\nPOSIX, MPI-IO, or HDF5 interfaces.\n", "version": [ { "downloads": [ "https://github.com/hpc/ior/archive/3.0.1.tar.gz" ], "version": "3.0.1" }, { "downloads": [ "https://github.com/hpc/ior/archive/3.2.0.tar.gz" ], "version": "3.2.0" }, { "downloads": [ "https://github.com/hpc/ior/archive/3.2.1.tar.gz" ], "version": "3.2.1" }, { "downloads": [ "https://github.com/hpc/ior/archive/3.3.0.tar.gz" ], "version": "3.3.0" }, { "downloads": [ "https://github.com/hpc/ior/archive/3.3.0rc1.tar.gz" ], "version": "3.3.0rc1" }, { "downloads": [ "https://github.com/hpc/ior/archive/4.0.0.tar.gz" ], "version": "4.0.0" }, { "branch": "develop", "version": "develop" } ] }, "iotaa": { "alias": [], "categories": [], "dependencies": [ "py-pip", "py-setuptools", "py-wheel", "python", "python-venv" ], "downloads": [ "https://github.com/maddenp/iotaa/archive/refs/tags/v1.3.0-0.tar.gz", "https://github.com/maddenp/iotaa/archive/refs/tags/v1.2.3-0.tar.gz", "https://github.com/maddenp/iotaa/archive/refs/tags/v1.1.6-0.tar.gz", "https://github.com/maddenp/iotaa/archive/refs/tags/v0.8.3-0.tar.gz" ], "homepages": [ "https://github.com/maddenp/iotaa" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "maddenp" ], "name": "iotaa", "patches": [], "summary": "A simple workflow engine with semantics inspired by Luigi and tasks\nexpressed as decorated Python functions\n", "version": [ { "downloads": [ "https://github.com/maddenp/iotaa/archive/refs/tags/v0.8.3-0.tar.gz" ], "version": "0.8.3" }, { "downloads": [ "https://github.com/maddenp/iotaa/archive/refs/tags/v1.1.6-0.tar.gz" ], "version": "1.1.6" }, { "downloads": [ "https://github.com/maddenp/iotaa/archive/refs/tags/v1.2.3-0.tar.gz" ], "version": "1.2.3" }, { "downloads": [ "https://github.com/maddenp/iotaa/archive/refs/tags/v1.3.0-0.tar.gz" ], "version": "1.3.0" } ] }, "iozone": { "alias": [], "categories": [], "dependencies": [ "c", "gmake" ], "downloads": [ "https://www.iozone.org/src/current/iozone3_506.tar", "https://www.iozone.org/src/current/iozone3_491.tar", "https://www.iozone.org/src/current/iozone3_465.tar" ], "homepages": [ "https://www.iozone.org/" ], "licenses": [ "custom" ], "maintainers": [], "name": "iozone", "patches": [], "summary": "IOzone is a filesystem benchmark tool. The benchmark generates and\nmeasures a variety of file operations. Iozone has been ported to many\nmachines and runs under many operating systems.\n", "version": [ { "downloads": [ "https://www.iozone.org/src/current/iozone3_465.tar" ], "version": "3_465" }, { "downloads": [ "https://www.iozone.org/src/current/iozone3_491.tar" ], "version": "3_491" }, { "downloads": [ "https://www.iozone.org/src/current/iozone3_506.tar" ], "version": "3_506" } ] }, "ip": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "fortran", "gmake", "lapack", "ninja", "sp" ], "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-ip/archive/refs/tags/vdevelop.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-ip/archive/refs/tags/v5.3.0.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-ip/archive/refs/tags/v5.2.0.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-ip/archive/refs/tags/v5.1.0.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-ip/archive/refs/tags/v5.0.0.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-ip/archive/refs/tags/v4.4.0.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-ip/archive/refs/tags/v4.3.0.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-ip/archive/refs/tags/v4.2.0.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-ip/archive/refs/tags/v4.1.0.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-ip/archive/refs/tags/v4.0.0.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-ip/archive/refs/tags/v3.3.3.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-ip" ], "homepages": [ "https://noaa-emc.github.io/NCEPLIBS-ip" ], "licenses": [], "maintainers": [ "AlexanderRichert-NOAA", "Hang-Lei-NOAA", "edwardhartnett" ], "name": "ip", "patches": [], "summary": "The NCEP general interpolation library (iplib) contains Fortran 90\nsubprograms to be used for interpolating between nearly all grids used\nat NCEP. This is part of the NCEPLIBS project.\n", "version": [ { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-ip/archive/refs/tags/v3.3.3.tar.gz" ], "version": "3.3.3" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-ip/archive/refs/tags/v4.0.0.tar.gz" ], "version": "4.0.0" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-ip/archive/refs/tags/v4.1.0.tar.gz" ], "version": "4.1.0" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-ip/archive/refs/tags/v4.2.0.tar.gz" ], "version": "4.2.0" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-ip/archive/refs/tags/v4.3.0.tar.gz" ], "version": "4.3.0" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-ip/archive/refs/tags/v4.4.0.tar.gz" ], "version": "4.4.0" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-ip/archive/refs/tags/v5.0.0.tar.gz" ], "version": "5.0.0" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-ip/archive/refs/tags/v5.1.0.tar.gz" ], "version": "5.1.0" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-ip/archive/refs/tags/v5.2.0.tar.gz" ], "version": "5.2.0" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-ip/archive/refs/tags/v5.3.0.tar.gz" ], "version": "5.3.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/NOAA-EMC/NCEPLIBS-ip" } ], "version": "develop" } ] }, "ipcalc": { "alias": [], "categories": [], "dependencies": [ "c", "geoip-api-c", "gmake" ], "downloads": [ "https://github.com/nmav/ipcalc/archive/0.2.3.tar.gz", "https://github.com/nmav/ipcalc/archive/0.2.2.tar.gz", "https://github.com/nmav/ipcalc/archive/0.2.0.tar.gz" ], "homepages": [ "https://gitlab.com/ipcalc/ipcalc" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "ipcalc", "patches": [], "summary": "This is a modern tool to assist in network address calculations for IPv4\nand IPv6. It acts both as a tool to output human readable information\nabout a network or address, as well as a tool suitable to be used by\nscripts or other programs.\n", "version": [ { "downloads": [ "https://github.com/nmav/ipcalc/archive/0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://github.com/nmav/ipcalc/archive/0.2.2.tar.gz" ], "version": "0.2.2" }, { "downloads": [ "https://github.com/nmav/ipcalc/archive/0.2.3.tar.gz" ], "version": "0.2.3" } ] }, "iperf2": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gnuconfig" ], "downloads": [ "https://prdownloads.sourceforge.net/iperf2/iperf-2.1.9.tar.gz", "https://prdownloads.sourceforge.net/iperf2/iperf-2.1.8.tar.gz", "https://prdownloads.sourceforge.net/iperf2/iperf-2.1.7.tar.gz", "https://prdownloads.sourceforge.net/iperf2/iperf-2.0.12.tar.gz" ], "homepages": [ "https://sourceforge.net/projects/iperf2/" ], "licenses": [], "maintainers": [], "name": "iperf2", "patches": [], "summary": "This code is a continuation based from the no longer maintained iperf\n2.0.5 code base. Iperf 2.0.5 is still widely deployed and used by many\nfor testing networks and for qualifying networking products.\n", "version": [ { "downloads": [ "https://prdownloads.sourceforge.net/iperf2/iperf-2.0.12.tar.gz" ], "version": "2.0.12" }, { "downloads": [ "https://prdownloads.sourceforge.net/iperf2/iperf-2.1.7.tar.gz" ], "version": "2.1.7" }, { "downloads": [ "https://prdownloads.sourceforge.net/iperf2/iperf-2.1.8.tar.gz" ], "version": "2.1.8" }, { "downloads": [ "https://prdownloads.sourceforge.net/iperf2/iperf-2.1.9.tar.gz" ], "version": "2.1.9" } ] }, "iperf3": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://downloads.es.net/pub/iperf/iperf-3.17.1.tar.gz", "https://downloads.es.net/pub/iperf/iperf-3.17.tar.gz", "https://downloads.es.net/pub/iperf/iperf-3.16.tar.gz", "https://downloads.es.net/pub/iperf/iperf-3.14.tar.gz", "https://downloads.es.net/pub/iperf/iperf-3.12.tar.gz", "https://downloads.es.net/pub/iperf/iperf-3.9.tar.gz", "https://downloads.es.net/pub/iperf/iperf-3.6.tar.gz" ], "homepages": [ "https://software.es.net/iperf/" ], "licenses": [ "BSD-3-Clause-LBNL" ], "maintainers": [], "name": "iperf3", "patches": [], "summary": "The iperf series of tools perform active measurements to determine the\nmaximum achievable bandwidth on IP networks. iperf2 is a separately\nmaintained project.\n", "version": [ { "downloads": [ "https://downloads.es.net/pub/iperf/iperf-3.12.tar.gz" ], "version": "3.12" }, { "downloads": [ "https://downloads.es.net/pub/iperf/iperf-3.14.tar.gz" ], "version": "3.14" }, { "downloads": [ "https://downloads.es.net/pub/iperf/iperf-3.16.tar.gz" ], "version": "3.16" }, { "downloads": [ "https://downloads.es.net/pub/iperf/iperf-3.17.tar.gz" ], "version": "3.17" }, { "downloads": [ "https://downloads.es.net/pub/iperf/iperf-3.17.1.tar.gz" ], "version": "3.17.1" }, { "downloads": [ "https://downloads.es.net/pub/iperf/iperf-3.6.tar.gz" ], "version": "3.6" }, { "downloads": [ "https://downloads.es.net/pub/iperf/iperf-3.9.tar.gz" ], "version": "3.9" } ] }, "ipm": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "cuda", "cxx", "fortran", "gmake", "gnuconfig", "libtool", "libunwind", "m4", "mpi", "papi", "perl", "ploticus" ], "downloads": [ "https://github.com/nerscadmin/IPM.git" ], "homepages": [ "https://github.com/nerscadmin/IPM" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [ "Christoph-TU" ], "name": "ipm", "patches": [ "remove_MPI_2COMPLEX_and_MPI_2DOUBLE_COMPLEX.patch when +coll_details" ], "summary": "IPM is a portable profiling infrastructure for parallel codes. It\nprovides a low-overhead profile of application performance and resource\nutilization in a parallel program. Communication, computation, and IO\nare the primary focus.\n", "version": [ { "repositories": [ { "commit": "b008141ee16d39b33e20bffde615564afa107575", "type": "git", "url": "https://github.com/nerscadmin/IPM.git" } ], "version": "2.0.6" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/nerscadmin/IPM.git" } ], "version": "master" } ] }, "ipopt": { "alias": [], "categories": [], "dependencies": [ "blas", "c", "coinhsl", "cxx", "fortran", "gmake", "gnuconfig", "lapack", "metis", "mumps", "pkgconfig" ], "downloads": [ "https://github.com/coin-or/Ipopt/archive/refs/tags/releases/3.14.14.tar.gz", "https://github.com/coin-or/Ipopt/archive/refs/tags/releases/3.14.13.tar.gz", "https://github.com/coin-or/Ipopt/archive/refs/tags/releases/3.14.12.tar.gz", "https://github.com/coin-or/Ipopt/archive/refs/tags/releases/3.14.9.tar.gz", "https://github.com/coin-or/Ipopt/archive/refs/tags/releases/3.14.5.tar.gz", 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"https://github.com/coin-or/Ipopt/archive/refs/tags/releases/3.12.11.tar.gz", "https://github.com/coin-or/Ipopt/archive/refs/tags/releases/3.12.10.tar.gz", "https://github.com/coin-or/Ipopt/archive/refs/tags/releases/3.12.9.tar.gz", "https://github.com/coin-or/Ipopt/archive/refs/tags/releases/3.12.8.tar.gz", "https://github.com/coin-or/Ipopt/archive/refs/tags/releases/3.12.7.tar.gz", "https://github.com/coin-or/Ipopt/archive/refs/tags/releases/3.12.6.tar.gz", "https://github.com/coin-or/Ipopt/archive/refs/tags/releases/3.12.5.tar.gz", "https://github.com/coin-or/Ipopt/archive/refs/tags/releases/3.12.4.tar.gz", "https://github.com/coin-or/Ipopt/archive/refs/tags/releases/3.12.3.tar.gz", "https://github.com/coin-or/Ipopt/archive/refs/tags/releases/3.12.2.tar.gz", "https://github.com/coin-or/Ipopt/archive/refs/tags/releases/3.12.1.tar.gz", "https://github.com/coin-or/Ipopt/archive/refs/tags/releases/3.12.0.tar.gz" ], "homepages": [ "https://github.com/coin-or/Ipopt" ], "licenses": [ 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"name": "ipp" } ], "categories": [], "dependencies": [ "c", "tbb" ], "downloads": [ "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/9efbaac1-ae4e-4f55-b6ac-37093f852a04/intel-ipp-2022.3.0.394_offline.sh", "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/d9649232-67ed-489e-8cd8-2c4c54b06135/intel-ipp-2022.2.0.583_offline.sh", "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/a5a44f80-a3ef-45c3-a7be-d50157434d7c/intel-ipp-2022.1.0.649_offline.sh", "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/acf220fa-326d-4f6e-9b63-f2da47b6f680/intel-ipp-2022.0.0.809_offline.sh", "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/7e07b203-af56-4b52-b69d-97680826a8df/l_ipp_oneapi_p_2021.12.1.16_offline.sh", "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/ecc315bf-9e5a-4a23-b0ca-f58aea109e39/l_ipp_oneapi_p_2021.12.0.559_offline.sh", "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/c8d09493-ca9b-45b1-b720-12b8719b4136/l_ipp_oneapi_p_2021.11.0.532_offline.sh", "https://registrationcenter-download.intel.com/akdlm//IRC_NAS/2d48c7d9-e716-4c73-8fe5-77a9599a405f/l_ipp_oneapi_p_2021.10.0.670_offline.sh", "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/616a3fba-4ab6-4317-a17b-2be4b737fc37/l_ipp_oneapi_p_2021.9.0.49454_offline.sh", "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/732392fa-41b3-4a92-935e-6a2b823162a7/l_ipp_oneapi_p_2021.8.0.46345_offline.sh", "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/19126/l_ipp_oneapi_p_2021.7.0.25396_offline.sh", "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/19007/l_ipp_oneapi_p_2021.6.2.16995_offline.sh", "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/18925/l_ipp_oneapi_p_2021.6.1.8749_offline.sh", "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/18748/l_ipp_oneapi_p_2021.6.0.626_offline.sh", "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/18474/l_ipp_oneapi_p_2021.5.2.544_offline.sh", "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/18440/l_ipp_oneapi_p_2021.5.1.522_offline.sh", "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/18219/l_ipp_oneapi_p_2021.4.0.459_offline.sh", "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/17958/l_ipp_oneapi_p_2021.3.0.333_offline.sh", "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/17758/l_ipp_oneapi_p_2021.2.0.233_offline.sh", "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/17436/l_ipp_oneapi_p_2021.1.1.47_offline.sh" ], "homepages": [ "https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/ipp.html" ], "licenses": [ "https://intel.ly/393CijO" ], "maintainers": [ "rscohn2" ], "name": "intel-oneapi-ipp", "patches": [], "summary": "Intel Integrated Performance Primitives (Intel IPP) is an extensive\nlibrary of ready-to-use, domain-specific functions that are highly\noptimized for diverse Intel architectures. These functions take\nadvantage of Single Instruction, Multiple Data (SIMD) instructions and\nimprove the performance of computation-intensive applications, including\nsignal processing, data compression, video processing, and cryptography.\nThe intel-oneapi-ippcp package contains support for cryptography and\neverything else can be found in the intel-oneapi-ipp package. LICENSE\nINFORMATION: By downloading and using this software, you agree to the\nterms and conditions of the software license agreements at\nhttps://intel.ly/393CijO.\n", "version": [ { "downloads": [ "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/17436/l_ipp_oneapi_p_2021.1.1.47_offline.sh" ], "version": "2021.1.1" }, { "downloads": [ "https://registrationcenter-download.intel.com/akdlm//IRC_NAS/2d48c7d9-e716-4c73-8fe5-77a9599a405f/l_ipp_oneapi_p_2021.10.0.670_offline.sh" ], "version": "2021.10.0" }, { "downloads": [ "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/c8d09493-ca9b-45b1-b720-12b8719b4136/l_ipp_oneapi_p_2021.11.0.532_offline.sh" ], "version": "2021.11.0" }, { "downloads": [ "https://registrationcenter-download.intel.com/akdlm/IRC_NAS/ecc315bf-9e5a-4a23-b0ca-f58aea109e39/l_ipp_oneapi_p_2021.12.0.559_offline.sh" ], "version": "2021.12.0" }, { "downloads": [ 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Essentially, the input\nformat is a set of tables -- Lua's one (and only?) data structure.\n", "version": [ { "downloads": [ "https://github.com/LLNL/irep/archive/refs/tags/v1.0.0.tar.gz" ], "version": "1.0.0" } ] }, "isa-l": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "m4", "nasm", "yasm" ], "downloads": [ "https://github.com/intel/isa-l/archive/vmaster.tar.gz", "https://github.com/intel/isa-l/archive/v2.31.1.tar.gz", "https://github.com/intel/isa-l/archive/v2.30.0.tar.gz", "https://github.com/intel/isa-l/archive/v2.29.0.tar.gz", "https://github.com/intel/isa-l/archive/v2.28.0.tar.gz", "https://github.com/intel/isa-l/archive/v2.27.0.tar.gz", "https://github.com/intel/isa-l/archive/v2.26.0.tar.gz", "https://github.com/intel/isa-l/archive/v2.25.0.tar.gz", "https://github.com/intel/isa-l.git" ], "homepages": [ "https://github.com/intel/isa-l" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "hyoklee" ], "name": "isa-l", "patches": [], "summary": "ISA-L is a collection of optimized low-level functions targeting storage\napplications. ISA-L includes: - Erasure codes - Fast block Reed-Solomon\ntype erasure codes for any encode/decode matrix in GF(2^8). - CRC - Fast\nimplementations of cyclic redundancy check. Six different polynomials\nsupported. iscsi32, ieee32, t10dif, ecma64, iso64, jones64. - Raid -\ncalculate and operate on XOR and P+Q parity found in common RAID\nimplementations. - Compression - Fast deflate-compatible data\ncompression. - De-compression - Fast inflate-compatible data\ncompression.\n", "version": [ { "downloads": [ "https://github.com/intel/isa-l/archive/v2.25.0.tar.gz" ], "version": "2.25.0" }, { "downloads": [ "https://github.com/intel/isa-l/archive/v2.26.0.tar.gz" ], "version": "2.26.0" }, { "downloads": [ "https://github.com/intel/isa-l/archive/v2.27.0.tar.gz" ], "version": "2.27.0" }, { "downloads": [ "https://github.com/intel/isa-l/archive/v2.28.0.tar.gz" ], "version": "2.28.0" }, { "downloads": [ "https://github.com/intel/isa-l/archive/v2.29.0.tar.gz" ], "version": "2.29.0" }, { "downloads": [ "https://github.com/intel/isa-l/archive/v2.30.0.tar.gz" ], "version": "2.30.0" }, { "downloads": [ "https://github.com/intel/isa-l/archive/v2.31.1.tar.gz" ], "version": "2.31.1" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/intel/isa-l.git" } ], "version": "master" } ] }, "isa-l-crypto": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "m4", "nasm", "yasm" ], "downloads": [ "https://github.com/intel/isa-l_crypto/archive/vmaster.tar.gz", "https://github.com/intel/isa-l_crypto/archive/v2.24.0.tar.gz", "https://github.com/intel/isa-l_crypto/archive/v2.23.0.tar.gz", "https://github.com/intel/isa-l_crypto/archive/v2.22.0.tar.gz", "https://github.com/intel/isa-l_crypto.git" ], "homepages": [ "https://github.com/intel/isa-l_crypto" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "hyoklee" ], "name": "isa-l-crypto", "patches": [], "summary": "ISA-L_crypto is a collection of optimized low-level functions targeting\nstorage applications. ISA-L_crypto includes: - Multi-buffer hashes - run\nmultiple hash jobs together on one core for much better throughput than\nsingle-buffer versions. + SHA1, SHA256, SHA512, MD5 - Multi-hash - Get\nthe performance of multi-buffer hashing with a single-buffer interface.\n- Multi-hash + murmur - run both together. - AES - block ciphers + XTS,\nGCM, CBC - Rolling hash - Hash input in a window which moves through the\ninput\n", "version": [ { "downloads": [ "https://github.com/intel/isa-l_crypto/archive/v2.22.0.tar.gz" ], "version": "2.22.0" }, { "downloads": [ "https://github.com/intel/isa-l_crypto/archive/v2.23.0.tar.gz" ], "version": "2.23.0" }, { "downloads": [ "https://github.com/intel/isa-l_crypto/archive/v2.24.0.tar.gz" ], "version": "2.24.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/intel/isa-l_crypto.git" } ], "version": "master" } ] }, "isaac": { "alias": [], "categories": [], "dependencies": [ "boost", "cmake", 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DHCP\nservers, relay agents, and clients. ISC DHCP supports both IPv4 and\nIPv6, and is suitable for use in high-volume and high-reliability\napplications.\n", "version": [ { "downloads": [ "https://downloads.isc.org/isc/dhcp/4.3.5/dhcp-4.3.5.tar.gz" ], "version": "4.3.5" }, { "downloads": [ "https://downloads.isc.org/isc/dhcp/4.3.6/dhcp-4.3.6.tar.gz" ], "version": "4.3.6" }, { "downloads": [ "https://downloads.isc.org/isc/dhcp/4.4.0/dhcp-4.4.0.tar.gz" ], "version": "4.4.0" }, { "downloads": [ "https://downloads.isc.org/isc/dhcp/4.4.1/dhcp-4.4.1.tar.gz" ], "version": "4.4.1" }, { "downloads": [ "https://downloads.isc.org/isc/dhcp/4.4.2/dhcp-4.4.2.tar.gz" ], "version": "4.4.2" } ] }, "iscdtoolbox-commons": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "gmake", "ninja" ], "downloads": [ "https://github.com/ISCDtoolbox/Commons/archive/refs/tags/v1.0.0.tar.gz", "https://github.com/ISCDtoolbox/Commons.git" ], "homepages": [ "https://github.com/ISCDtoolbox" ], "licenses": [ "LGPL-3.0-only" ], "maintainers": [ 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Moreover, specialized techniques are included to partition\nroad networks (Buffoon), to output a vertex separator from a given\npartition or techniques geared towards efficient partitioning of social\nnetworks.\n", "version": [ { "downloads": [ "https://github.com/KaHIP/KaHIP/archive/v3.11.tar.gz" ], "version": "3.11" }, { "downloads": [ "https://github.com/KaHIP/KaHIP/archive/v3.12.tar.gz" ], "version": "3.12" }, { "downloads": [ "https://github.com/KaHIP/KaHIP/archive/v3.13.tar.gz" ], "version": "3.13" }, { "downloads": [ "https://github.com/KaHIP/KaHIP/archive/v3.14.tar.gz" ], "version": "3.14" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/KaHIP/KaHIP.git" } ], "version": "develop" } ] }, "kaiju": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl-io-compress", "py-htseq" ], "downloads": [ "https://github.com/bioinformatics-centre/kaiju/archive/v1.6.2.zip" ], "homepages": [ "https://github.com/bioinformatics-centre/kaiju" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "kaiju", "patches": [], "summary": "Kaiju is a program for the taxonomic classification of high-throughput\nsequencing reads.\n", "version": [ { "downloads": [ "https://github.com/bioinformatics-centre/kaiju/archive/v1.6.2.zip" ], "version": "1.6.2" } ] }, "kakoune": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "ncurses" ], "downloads": [ "https://github.com/mawww/kakoune/releases/download/v2024.05.18/kakoune-2024.05.18.tar.bz2", "https://github.com/mawww/kakoune/releases/download/v2024.05.09/kakoune-2024.05.09.tar.bz2", "https://github.com/mawww/kakoune/releases/download/v2023.08.05/kakoune-2023.08.05.tar.bz2", "https://github.com/mawww/kakoune/releases/download/v2021.11.08/kakoune-2021.11.08.tar.bz2" ], "homepages": [ "https://www.kakoune.org" ], "licenses": [ "Unlicense" ], "maintainers": [ "Bambi", "taliaferro" ], "name": "kakoune", "patches": [], "summary": "mawww's experiment for a better code editor.\n", "version": [ { "downloads": [ "https://github.com/mawww/kakoune/releases/download/v2021.11.08/kakoune-2021.11.08.tar.bz2" ], "version": "2021.11.08" }, { "downloads": [ "https://github.com/mawww/kakoune/releases/download/v2023.08.05/kakoune-2023.08.05.tar.bz2" ], "version": "2023.08.05" }, { "downloads": [ "https://github.com/mawww/kakoune/releases/download/v2024.05.09/kakoune-2024.05.09.tar.bz2" ], "version": "2024.05.09" }, { "downloads": [ "https://github.com/mawww/kakoune/releases/download/v2024.05.18/kakoune-2024.05.18.tar.bz2" ], "version": "2024.05.18" } ] }, "kakoune-lsp": { "alias": [], "categories": [], "dependencies": [ "rust" ], "downloads": [ "https://github.com/kakoune-lsp/kakoune-lsp/archive/refs/tags/v17.0.1.tar.gz" ], "homepages": [ "https://github.com/kakoune-lsp/kakoune-lsp" ], "licenses": [ "UNLICENSE" ], "maintainers": [ "taliaferro" ], "name": "kakoune-lsp", "patches": [], "summary": "Kakoune Language Server Protocol Client\n", "version": [ { "downloads": [ "https://github.com/kakoune-lsp/kakoune-lsp/archive/refs/tags/v17.0.1.tar.gz" ], "version": "17.0.1" } ] }, "kaks-calculator": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake" ], "downloads": [ "https://downloads.sourceforge.net/project/kakscalculator2/KaKs_Calculator2.0.tar.gz" ], "homepages": [ "https://sourceforge.net/projects/kakscalculator2/" ], "licenses": [], "maintainers": [], "name": "kaks-calculator", "patches": [], "summary": "KaKs_Calculator adopts model selection and model averaging to calculate\nnonsynonymous (Ka) and synonymous (Ks) substitution rates, attempting to\ninclude as many features as needed for accurately capturing evolutionary\ninformation in protein-coding sequences.\n", "version": [ { "downloads": [ "https://downloads.sourceforge.net/project/kakscalculator2/KaKs_Calculator2.0.tar.gz" ], "version": "2.0" } ] }, "kaldi": { "alias": [], "categories": [], "dependencies": [ "blas", "cub", "cuda", "cxx", "gmake", "openfst", "sctk", "speex", "sph2pipe" ], "downloads": [ "https://github.com/kaldi-asr/kaldi.git" ], "homepages": [ "https://github.com/kaldi-asr/kaldi" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "kaldi", "patches": [ "openfst-1.4.1.patch when @2015-10-07", "0001_CMakeLists_txt.patch when @11:+cuda", "fujitsu_fix_version_analysis.patch when @2018-07-11: %fj" ], "summary": "Kaldi is a toolkit for speech recognition written in C++ and licensed\nunder the Apache License v2.0. Kaldi is intended for use by speech\nrecognition researchers.\n", "version": [ { "repositories": [ { "commit": "c024e8aa0a727bf76c91a318f76a1f8b0b59249e", "type": "git", "url": "https://github.com/kaldi-asr/kaldi.git" } ], "version": "2015-10-07" }, { "repositories": [ { "commit": "6f2140b032b0108bc313eefdca65151289642773", "type": "git", "url": "https://github.com/kaldi-asr/kaldi.git" } ], "version": "2018-07-11" }, { "repositories": [ { "commit": "7637de77e0a77bf280bef9bf484e4f37c4eb9475", "type": "git", "url": "https://github.com/kaldi-asr/kaldi.git" } ], "version": "2019-07-29" }, { "repositories": [ { "commit": "6ffde4b41c58de778245149690927d592cd5956a", "type": "git", "url": "https://github.com/kaldi-asr/kaldi.git" } ], "version": "2019-09-29" }, { "repositories": [ { "commit": "6e03a3f5f99d6d8c22494d90b7e7f9ceb0117ac8", "type": "git", "url": "https://github.com/kaldi-asr/kaldi.git" } ], "version": "2021-11-16" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/kaldi-asr/kaldi.git" } ], "version": "master" } ] }, "kalign": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "cmake", "cxx", "gmake", "gnuconfig", "libtool", "ninja" ], "downloads": [ "https://github.com/TimoLassmann/kalign/archive/refs/tags/v3.4.0.tar.gz", "https://github.com/TimoLassmann/kalign/archive/refs/tags/v3.3.1.tar.gz" ], "homepages": [ "https://github.com/TimoLassmann/kalign" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "kalign", "patches": [], "summary": "A fast multiple sequence alignment program for biological sequences.\n", "version": [ { "downloads": [ "https://github.com/TimoLassmann/kalign/archive/refs/tags/v3.3.1.tar.gz" ], "version": "3.3.1" }, { "downloads": [ "https://github.com/TimoLassmann/kalign/archive/refs/tags/v3.4.0.tar.gz" ], "version": "3.4.0" } ] }, "kallisto": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "cmake", "cxx", "gmake", "hdf5", "libtool", "m4", "ninja", "zlib-api" ], "downloads": [ "https://github.com/pachterlab/kallisto/archive/v0.50.1.tar.gz", "https://github.com/pachterlab/kallisto/archive/v0.48.0.tar.gz", "https://github.com/pachterlab/kallisto/archive/v0.46.2.tar.gz", "https://github.com/pachterlab/kallisto/archive/v0.43.1.tar.gz" ], "homepages": [ "https://pachterlab.github.io/kallisto" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "kallisto", "patches": [ "link_zlib.patch when @:0.43", "limits.patch when @:0.46", "htslib_configure.patch when @0.44.0:0.48.0 ^autoconf@2.70:" ], "summary": "kallisto is a program for quantifying abundances of transcripts from\nRNA-Seq data.\n", "version": [ { "downloads": [ "https://github.com/pachterlab/kallisto/archive/v0.43.1.tar.gz" ], "version": "0.43.1" }, { "downloads": [ "https://github.com/pachterlab/kallisto/archive/v0.46.2.tar.gz" ], "version": "0.46.2" }, { "downloads": [ "https://github.com/pachterlab/kallisto/archive/v0.48.0.tar.gz" ], "version": "0.48.0" }, { "downloads": [ "https://github.com/pachterlab/kallisto/archive/v0.50.1.tar.gz" ], "version": "0.50.1" } ] }, "karma": { "alias": [], "categories": [], "dependencies": [ "libx11", "libxaw" ], "downloads": [ "ftp://ftp.atnf.csiro.au/pub/software/karma/karma-1.7.25-common.tar.bz2" ], "homepages": [ "https://www.atnf.csiro.au/computing/software/karma/" ], "licenses": [], "maintainers": [], "name": "karma", "patches": [], "summary": "Karma is a toolkit for interprocess communications, authentication,\nencryption, graphics display, user interface and manipulating the Karma\nnetwork data structure. It contains KarmaLib (the structured libraries\nand API) and a large number of modules (applications) to perform many\nstandard tasks.\n", "version": [ { "downloads": [ "ftp://ftp.atnf.csiro.au/pub/software/karma/karma-1.7.25-common.tar.bz2" ], "version": "1.7.25-common" } ] }, "kassiopeia": { "alias": [], "categories": [ "hep" ], "dependencies": [ "boost", "c", "cmake", "cxx", "gmake", "log4cxx", "mpi", "ninja", "opencl", "root", "tbb", "vtk", "zlib-api" ], "downloads": [ "https://github.com/KATRIN-Experiment/Kassiopeia/archive/vmain.tar.gz", "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.8.2.tar.gz", "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.8.0.tar.gz", "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.7.7.tar.gz", "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.7.6.tar.gz", "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.7.5.tar.gz", "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.7.4.tar.gz", "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.7.3.tar.gz", "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.7.2.tar.gz", "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.7.1.tar.gz", "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.7.0.tar.gz", "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.6.1.tar.gz", "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.5.0.tar.gz", "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.4.0.tar.gz", "https://github.com/KATRIN-Experiment/Kassiopeia.git" ], "homepages": [ "https://katrin-experiment.github.io/Kassiopeia/" ], "licenses": [], "maintainers": [ "wdconinc" ], "name": "kassiopeia", "patches": [], "summary": "Simulation of electric and magnetic fields and particle tracking.\n", "version": [ { "downloads": [ "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.4.0.tar.gz" ], "version": "3.4.0" }, { "downloads": [ "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.5.0.tar.gz" ], "version": "3.5.0" }, { "downloads": [ "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.6.1.tar.gz" ], "version": "3.6.1" }, { "downloads": [ "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.7.0.tar.gz" ], "version": "3.7.0" }, { "downloads": [ "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.7.1.tar.gz" ], "version": "3.7.1" }, { "downloads": [ "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.7.2.tar.gz" ], "version": "3.7.2" }, { "downloads": [ "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.7.3.tar.gz" ], "version": "3.7.3" }, { "downloads": [ "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.7.4.tar.gz" ], "version": "3.7.4" }, { "downloads": [ "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.7.5.tar.gz" ], "version": "3.7.5" }, { "downloads": [ "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.7.6.tar.gz" ], "version": "3.7.6" }, { "downloads": [ "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.7.7.tar.gz" ], "version": "3.7.7" }, { "downloads": [ "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.8.0.tar.gz" ], "version": "3.8.0" }, { "downloads": [ "https://github.com/KATRIN-Experiment/Kassiopeia/archive/v3.8.2.tar.gz" ], "version": "3.8.2" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/KATRIN-Experiment/Kassiopeia.git" } ], "version": "main" } ] }, "kbd": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libpam", "libtool", "m4" ], "downloads": [ "https://github.com/legionus/kbd/archive/v2.3.0.tar.gz", "https://github.com/legionus/kbd/archive/v2.2.90.tar.gz", "https://github.com/legionus/kbd/archive/v2.2.0.tar.gz" ], "homepages": [ "https://kbd-project.org/" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "kbd", "patches": [], "summary": "The kbd project contains tools for managing Linux console (Linux\nconsole, virtual terminals, keyboard, etc.) - mainly, what they do is\nloading console fonts and keyboard maps.\n", "version": [ { "downloads": [ "https://github.com/legionus/kbd/archive/v2.2.0.tar.gz" ], "version": "2.2.0" }, { "downloads": [ "https://github.com/legionus/kbd/archive/v2.2.90.tar.gz" ], "version": "2.2.90" }, { "downloads": [ "https://github.com/legionus/kbd/archive/v2.3.0.tar.gz" ], "version": "2.3.0" } ] }, "kbproto": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/proto/kbproto-1.0.7.tar.gz" ], "homepages": [ "https://cgit.freedesktop.org/xorg/proto/kbproto" ], "licenses": [], "maintainers": [], "name": "kbproto", "patches": [], "summary": "X Keyboard Extension. This extension defines a protcol to provide a\nnumber of new capabilities and controls for text keyboards.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/proto/kbproto-1.0.7.tar.gz" ], "version": "1.0.7" } ] }, "kcov": { "alias": [], "categories": [], "dependencies": [ "binutils", "c", "cmake", "curl", "cxx", "elfutils", "gmake", "ninja", "zlib-api" ], "downloads": [ "https://github.com/SimonKagstrom/kcov/archive/refs/tags/v42.tar.gz" ], "homepages": [ "https://simonkagstrom.github.io/kcov/index.html" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "kcov", "patches": [], "summary": "Code coverage tool for compiled programs, Python and Bash which uses\ndebugging information to collect and report data without special\ncompilation options\n", "version": [ { "downloads": [ "https://github.com/SimonKagstrom/kcov/archive/refs/tags/v42.tar.gz" ], "version": "42" } ] }, "kdiff3": { "alias": [], "categories": [], "dependencies": [ "cxx", "qt" ], "downloads": [ "https://downloads.sourceforge.net/project/kdiff3/kdiff3/0.9.98/kdiff3-0.9.98.tar.gz" ], "homepages": [ "https://kdiff3.sourceforge.net/" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "kdiff3", "patches": [], "summary": "Compare and merge 2 or 3 files or directories.\n", "version": [ { "downloads": [ "https://downloads.sourceforge.net/project/kdiff3/kdiff3/0.9.98/kdiff3-0.9.98.tar.gz" ], "version": "0.9.98" } ] }, "kea": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "boost", "cxx", "gmake", "gnuconfig", "libtool", "log4cplus", "m4" ], "downloads": [ "https://downloads.isc.org/isc/kea/1.6.2/kea-1.6.2.tar.gz" ], "homepages": [ "https://www.isc.org/kea/" ], "licenses": [ "MPL-2.0" ], "maintainers": [], "name": "kea", "patches": [], "summary": "Modern, open source DHCPv4 & DHCPv6 server.\n", "version": [ { "downloads": [ "https://downloads.isc.org/isc/kea/1.6.2/kea-1.6.2.tar.gz" ], "version": "1.6.2" } ] }, "kealib": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "gmake", "hdf5", "ninja" ], "downloads": [ "https://github.com/ubarsc/kealib/releases/download/kealib-develop/kealib-develop.tar.gz", "https://github.com/ubarsc/kealib/releases/download/kealib-1.5.3/kealib-1.5.3.tar.gz", "https://github.com/ubarsc/kealib/releases/download/kealib-1.5.2/kealib-1.5.2.tar.gz", "https://github.com/ubarsc/kealib/releases/download/kealib-1.5.1/kealib-1.5.1.tar.gz", "https://github.com/ubarsc/kealib/releases/download/kealib-1.5.0/kealib-1.5.0.tar.gz", "https://github.com/ubarsc/kealib/releases/download/kealib-1.4.15/kealib-1.4.15.tar.gz", "https://github.com/ubarsc/kealib/releases/download/kealib-1.4.12/kealib-1.4.12.tar.gz", "https://github.com/ubarsc/kealib/releases/download/kealib-1.4.11/kealib-1.4.11.tar.gz", "https://github.com/ubarsc/kealib/releases/download/kealib-1.4.10/kealib-1.4.10.tar.gz", "https://github.com/ubarsc/kealib/releases/download/kealib-1.4.9/kealib-1.4.9.tar.gz", "https://github.com/ubarsc/kealib/releases/download/kealib-1.4.8/kealib-1.4.8.tar.gz", "https://github.com/ubarsc/kealib/releases/download/kealib-1.4.7/kealib-1.4.7.tar.gz", "https://github.com/ubarsc/kealib" ], "homepages": [ "http://www.kealib.org/" ], "licenses": [ "MIT" ], "maintainers": [ "gillins", "neilflood", "petebunting" ], "name": "kealib", "patches": [ "cmake.patch when @1.4.7" ], "summary": "An HDF5 Based Raster File Format. 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C++20 Tuple & Tuple-base Algorithms Library.\n", "version": [ { "downloads": [ "https://github.com/jfalcou/kumi/archive/refs/tags/v1.0.tar.gz" ], "version": "1.0" }, { "downloads": [ "https://github.com/jfalcou/kumi/archive/refs/tags/v2.0.tar.gz" ], "version": "2.0" }, { "downloads": [ "https://github.com/jfalcou/kumi/archive/refs/tags/v2.1.tar.gz" ], "version": "2.1" }, { "downloads": [ "https://github.com/jfalcou/kumi/archive/refs/tags/v3.0.tar.gz" ], "version": "3.0" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/jfalcou/kumi.git" } ], "version": "main" } ] }, "kvasir-mpl": { "alias": [], "categories": [], "dependencies": [ "cxx" ], "downloads": [ "https://github.com/kvasir-io/mpl.git" ], "homepages": [ "https://github.com/kvasir-io/mpl" ], "licenses": [ "BSL-1.0" ], "maintainers": [], "name": "kvasir-mpl", "patches": [], "summary": "Kvasir metaprogramming library\n", "version": [ { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/kvasir-io/mpl.git" } ], "version": "develop" } ] }, "kvtree": { "alias": [], "categories": [ "ecp" ], "dependencies": [ "c", "cmake", "cxx", "gmake", "mpi", "ninja", "zlib-api" ], "downloads": [ "https://github.com/ecp-veloc/KVTree/archive/vmain.tar.gz", "https://github.com/ecp-veloc/KVTree/archive/v1.5.0.tar.gz", "https://github.com/ecp-veloc/KVTree/archive/v1.4.0.tar.gz", "https://github.com/ecp-veloc/KVTree/archive/v1.3.0.tar.gz", "https://github.com/ecp-veloc/KVTree/archive/v1.2.0.tar.gz", "https://github.com/ecp-veloc/KVTree/archive/v1.1.1.tar.gz", "https://github.com/ecp-veloc/KVTree/archive/v1.1.0.tar.gz", "https://github.com/ecp-veloc/KVTree/archive/v1.0.3.tar.gz", "https://github.com/ecp-veloc/KVTree/archive/v1.0.2.tar.gz", "https://github.com/ecp-veloc/kvtree.git" ], "homepages": [ "https://github.com/ecp-veloc/KVTree" ], "licenses": [ "MIT" ], "maintainers": [ "CamStan", "gonsie" ], "name": "kvtree", "patches": [], "summary": "KVTree provides a fully extensible C datastructure modeled after perl\nhashes.\n", "version": [ { "downloads": [ "https://github.com/ecp-veloc/KVTree/archive/v1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://github.com/ecp-veloc/KVTree/archive/v1.0.3.tar.gz" ], "version": "1.0.3" }, { "downloads": [ "https://github.com/ecp-veloc/KVTree/archive/v1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://github.com/ecp-veloc/KVTree/archive/v1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://github.com/ecp-veloc/KVTree/archive/v1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://github.com/ecp-veloc/KVTree/archive/v1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://github.com/ecp-veloc/KVTree/archive/v1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://github.com/ecp-veloc/KVTree/archive/v1.5.0.tar.gz" ], "version": "1.5.0" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/ecp-veloc/kvtree.git" } ], "version": "main" } ] }, "kylin": { "alias": [], "categories": [], "dependencies": [ "cxx", "java", "maven" ], "downloads": [ "https://github.com/apache/kylin/archive/kylin-3.1.0.tar.gz" ], "homepages": [ "https://kylin.apache.org" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "kylin", "patches": [], "summary": "Apache Kylin is an open source, distributed Analytical Data Warehouse\nfor Big Data; it was designed to provide OLAP (Online Analytical\nProcessing) capability in the big data era. By renovating the multi-\ndimensional cube and precalculation technology on Hadoop and Spark,\nKylin is able to achieve near constant query speed regardless of the\never-growing data volume. Reducing query latency from minutes to sub-\nsecond, Kylin brings online analytics back to big data.\n", "version": [ { "downloads": [ "https://github.com/apache/kylin/archive/kylin-3.1.0.tar.gz" ], "version": "3.1.0" } ] }, "kynema": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cuda", "cudss", "cxx", "eigen", "gmake", "googletest", "hip", "hsa-rocr-dev", "kokkos", "kokkos-kernels", "lapack", "llvm-amdgpu", "mkl", "netcdf-c", "ninja", "openfast", "rosco", "suite-sparse", "superlu", "superlu-mt", "yaml-cpp" ], "downloads": [ "https://github.com/kynema/kynema.git", "https://github.com/kynema/kynema.git" ], "homepages": [ "https://kynema.github.io/kynema/" ], "licenses": [ "MIT License" ], "maintainers": [ "ddement", "deslaughter", "faisal-bhuiyan" ], "name": "kynema", "patches": [], "summary": "An open-source performance-oriented structural dynamics simulation code.\n", "version": [ { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/kynema/kynema.git" } ], "version": "main" } ] }, "kyotocabinet": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gnuconfig", "lzo", "xz", "zlib-api" ], "downloads": [ "https://dbmx.net/kyotocabinet/pkg/kyotocabinet-1.2.80.tar.gz" ], "homepages": [ "https://dbmx.net/kyotocabinet/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "kyotocabinet", "patches": [], "summary": "Kyoto Cabinet is a library of routines for managing a database.\n", "version": [ { "downloads": [ "https://dbmx.net/kyotocabinet/pkg/kyotocabinet-1.2.80.tar.gz" ], "version": "1.2.80" } ] }, "ladot": { "alias": [], "categories": [], "dependencies": [ "gmake", "graphviz", "perl", "texlive" ], "downloads": [ "https://brighten.bigw.org/projects/ladot/ladot-1.2.tar.gz" ], "homepages": [ "https://brighten.bigw.org/projects/ladot/" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "ladot", "patches": [], "summary": "Ladot is a script that makes using LaTeX in graphs generated by dot\n(graphviz) relatively easy.\n", "version": [ { "downloads": [ "https://brighten.bigw.org/projects/ladot/ladot-1.2.tar.gz" ], "version": "1.2" } ] }, "laghos": { "alias": [], "categories": [ "proxy-app", "ecp-proxy-app", "e4s" ], "dependencies": [ "cxx", "gmake", "mfem" ], "downloads": [ "https://github.com/CEED/Laghos/archive/vdevelop.tar.gz", "https://github.com/CEED/Laghos/archive/v3.1.tar.gz", "https://github.com/CEED/Laghos/archive/v3.0.tar.gz", "https://github.com/CEED/Laghos/archive/v2.0.tar.gz", "https://github.com/CEED/Laghos/archive/v1.1.tar.gz", "https://github.com/CEED/Laghos/archive/v1.0.tar.gz", "https://github.com/CEED/Laghos.git" ], "homepages": [ "https://computing.llnl.gov/projects/co-design/laghos" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [ "tzanio", "v-dobrev", "vladotomov" ], "name": "laghos", "patches": [ "https://github.com/CEED/Laghos/commit/c800883ab2741c8c3b99486e7d8ddd8e53a7cb95.patch?full_index=1 when @3.1 ^mfem@4.4:" ], "summary": "Laghos (LAGrangian High-Order Solver) is a CEED miniapp that solves the\ntime-dependent Euler equations of compressible gas dynamics in a moving\nLagrangian frame using unstructured high-order finite element spatial\ndiscretization and explicit high-order time-stepping.\n", "version": [ { "downloads": [ "https://github.com/CEED/Laghos/archive/v1.0.tar.gz" ], "version": "1.0" }, { "downloads": [ "https://github.com/CEED/Laghos/archive/v1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ "https://github.com/CEED/Laghos/archive/v2.0.tar.gz" ], "version": "2.0" }, { "downloads": [ "https://github.com/CEED/Laghos/archive/v3.0.tar.gz" ], "version": "3.0" }, { "downloads": [ "https://github.com/CEED/Laghos/archive/v3.1.tar.gz" ], "version": "3.1" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/CEED/Laghos.git" } ], "version": "develop" } ] }, "lame": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gnuconfig", "nasm" ], "downloads": [ "https://download.sourceforge.net/project/lame/lame/3.100/lame-3.100.tar.gz" ], "homepages": [ "https://lame.sourceforge.net/" ], "licenses": [ "LGPL-2.0-or-later" ], "maintainers": [], "name": "lame", "patches": [], "summary": "LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under\nthe LGPL.\n", "version": [ { "downloads": [ "https://download.sourceforge.net/project/lame/lame/3.100/lame-3.100.tar.gz" ], "version": "3.100" } ] }, "lammps": { "alias": [], "categories": [ "ecp", "ecp-apps", "e4s" ], "dependencies": [ "adios2", "blas", "c", "cmake", "cuda", "curl", "cxx", "eigen", "ffmpeg", "fftw-api", "fortran", "gmake", "googletest", "gsl", "hdf5", "heffte", "hip", "hipcub", "hipfft", "hsa-rocr-dev", "jpeg", "kim-api", "kokkos", "lapack", "latte", "libpng", "libyaml", "llvm-amdgpu", "llvm-openmp", "mkl", "mpi", "n2p2", "netcdf-c", "ninja", "nvpl-fft", "opencl", "pace", "plumed", "py-build", "py-cython", "py-mdi", "py-mpi4py", "py-numpy", "py-pip", "py-setuptools", "py-wheel", "python", "python-venv", "rocm-openmp-extras", "scafacos", "tbb", "voropp", "vtk" ], "downloads": [ "https://github.com/lammps/lammps/archive/patch_1Sep2017.tar.gz", "https://github.com/lammps/lammps.git" ], "homepages": [ "https://www.lammps.org/" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [ "rbberger" ], "name": "lammps", "patches": [ "https://github.com/lammps/lammps/commit/ebb8eee941e52c98054fdf96ea78ee4d5f606f47.patch?full_index=1 when @20220623.3:20230208+kokkos+kspace+rocm", "https://github.com/lammps/lammps/commit/49bdc3e26449634f150602a66d0dab34d09dbc0e.patch?full_index=1 when @20240829 %cce", "https://github.com/lammps/lammps/commit/4e69046e5481f18f6d1402bca04fb3412991eec9.patch?full_index=1 when @20221103:20250402+openmp %apple-clang", "lib.patch when @20170901", "660.patch when @20170922", "gtest_fix.patch when @:20210310 %aocc@3.2.0", "intel-aocc.patch when @20220324:20220623.3,20220803:20221103+intel %aocc", "https://github.com/lammps/lammps/commit/562300996285fdec4ef74542383276898555af06.patch?full_index=1 when @20200721+cuda", "hip_cmake.patch when @20220623:20221222~kokkos+rocm" ], "summary": "LAMMPS stands for Large-scale Atomic/Molecular Massively Parallel\nSimulator.\n", "version": [ { "downloads": [ "https://github.com/lammps/lammps/archive/stable_3Mar2020.tar.gz" ], "version": "20200303" }, { "downloads": [ "https://github.com/lammps/lammps/archive/stable_29Oct2020.tar.gz" ], "version": "20201029" }, { "downloads": [ "https://github.com/lammps/lammps/archive/stable_29Sep2021_update3.tar.gz" ], "version": "20210929.3" }, { "downloads": [ "https://github.com/lammps/lammps/archive/stable_23Jun2022_update4.tar.gz" ], "version": "20220623.4" }, { "downloads": [ "https://github.com/lammps/lammps/archive/stable_2Aug2023_update4.tar.gz" ], "version": "20230802.4" }, { "downloads": [ "https://github.com/lammps/lammps/archive/stable_29Aug2024_update4.tar.gz" ], "version": "20240829.4" }, { "downloads": [ "https://github.com/lammps/lammps/archive/stable_22Jul2025.tar.gz" ], "version": "20250722" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/lammps/lammps.git" } ], "version": "develop" } ] }, "lammps-example-plugin": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "gmake", "lammps", "ninja" ], "downloads": [ "https://github.com/lammps/lammps/archive/patch_1Sep2017.tar.gz", "https://github.com/lammps/lammps.git" ], "homepages": [ "https://www.lammps.org/" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [ "rbberger" ], "name": "lammps-example-plugin", "patches": [], "summary": "LAMMPS Example Plugin\n", "version": [ { "downloads": [ "https://github.com/lammps/lammps/archive/patch_2Aug2023_update3.tar.gz" ], "version": "20230802.3" }, { "downloads": [ "https://github.com/lammps/lammps/archive/stable_2Aug2023_update4.tar.gz" ], "version": "20230802.4" }, { "downloads": [ "https://github.com/lammps/lammps/archive/patch_21Nov2023.tar.gz" ], "version": "20231121" }, { "downloads": [ "https://github.com/lammps/lammps/archive/patch_7Feb2024_update1.tar.gz" ], "version": "20240207.1" }, { "downloads": [ "https://github.com/lammps/lammps/archive/patch_17Apr2024.tar.gz" ], "version": "20240417" }, { "downloads": [ "https://github.com/lammps/lammps/archive/patch_27Jun2024.tar.gz" ], "version": "20240627" }, { "downloads": [ "https://github.com/lammps/lammps/archive/patch_29Aug2024.tar.gz" ], "version": "20240829" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/lammps/lammps.git" } ], "version": "develop" } ] }, "landsfcutil": { "alias": [], "categories": [], "dependencies": [ "cmake", "fortran", "gmake", "ninja", "pfunit" ], "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-landsfcutil/archive/refs/tags/vdevelop.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-landsfcutil/archive/refs/tags/v2.4.2.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-landsfcutil/archive/refs/tags/v2.4.1.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-landsfcutil" ], "homepages": [ "https://github.com/NOAA-EMC/NCEPLIBS-landsfcutil" ], "licenses": [], "maintainers": [ "AlexanderRichert-NOAA", "Hang-Lei-NOAA", "edwardhartnett" ], "name": "landsfcutil", "patches": [], "summary": "Utility routines useful for initializing land-surface states in NCEP\nmodels. 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"maintainers": [], "name": "libavif", "patches": [], "summary": "libavif - Library for encoding and decoding .avif files.\n", "version": [ { "downloads": [ "https://github.com/AOMediaCodec/libavif/archive/refs/tags/v1.1.1.tar.gz" ], "version": "1.1.1" } ] }, "libbacktrace": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://github.com/ianlancetaylor/libbacktrace.git" ], "homepages": [ "https://github.com/ianlancetaylor/libbacktrace" ], "licenses": [], "maintainers": [ "trahay" ], "name": "libbacktrace", "patches": [], "summary": "A C library that may be linked into a C/C++ program to produce symbolic\nbacktraces.\n", "version": [ { "repositories": [ { "commit": "ca0de0517f3be44fedf5a2c01cfaf6437d4cae68", "type": "git", "url": "https://github.com/ianlancetaylor/libbacktrace.git" } ], "version": "2020-02-19" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": 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Since that time dwarfdump and libdwarf have\nbeen shipped (as an executable and archive respectively, not source)\nwith every release of the SGI MIPS/IRIX C compiler.\n", "version": [ { "downloads": [ "https://www.prevanders.net/libdwarf-0.10.1.tar.xz" ], "version": "0.10.1" }, { "downloads": [ "https://www.prevanders.net/libdwarf-0.11.0.tar.xz" ], "version": "0.11.0" }, { "downloads": [ "https://www.prevanders.net/libdwarf-0.12.0.tar.xz" ], "version": "0.12.0" }, { "downloads": [ "https://www.prevanders.net/libdwarf-2.0.0.tar.xz" ], "version": "2.0.0" }, { "downloads": [ "https://www.prevanders.net/libdwarf-2.1.0.tar.xz" ], "version": "2.1.0" } ] }, "libeatmydata": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "strace" ], "downloads": [ "https://www.flamingspork.com/projects/libeatmydata/libeatmydata-131.tar.gz", "https://www.flamingspork.com/projects/libeatmydata/libeatmydata-105.tar.gz" ], "homepages": [ "https://www.flamingspork.com/projects/libeatmydata/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "libeatmydata", "patches": [], "summary": "libeatmydata is a small LD_PRELOAD library designed to (transparently)\ndisable fsync (and friends, like open(O_SYNC)). 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The library takes care of size and endian\nissues, e.g. you can process a file for SPARC processors on an Intel-\nbased system. Note: libelf is no longer maintained and packages that\ndepend on libelf should migrate to elfutils.\n", "version": [ { "downloads": [ "https://fossies.org/linux/misc/old/libelf-0.8.13.tar.gz" ], "version": "0.8.13" } ] }, "libemos": { "alias": [], "categories": [], "dependencies": [ "cmake", "eccodes", "fftw", "gmake", "ninja", "pkgconfig" ], "downloads": [ "https://software.ecmwf.int/wiki/download/attachments/3473472/libemos-4.5.1-Source.tar.gz", "https://software.ecmwf.int/wiki/download/attachments/3473472/libemos-4.5.0-Source.tar.gz", "https://software.ecmwf.int/wiki/download/attachments/3473472/libemos-4.4.9-Source.tar.gz", "https://software.ecmwf.int/wiki/download/attachments/3473472/libemos-4.4.7-Source.tar.gz", "https://software.ecmwf.int/wiki/download/attachments/3473472/libemos-4.4.2-Source.tar.gz" ], "homepages": [ "https://software.ecmwf.int/wiki/display/EMOS/Emoslib" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "libemos", "patches": [], "summary": "The 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While not\nrestricted to use on the web, the most common applications of GD involve\nwebsite development.\n", "version": [ { "downloads": [ "https://github.com/libgd/libgd/releases/download/gd-2.2.4/libgd-2.2.4.tar.gz" ], "version": "2.2.4" }, { "downloads": [ "https://github.com/libgd/libgd/releases/download/gd-2.3.3/libgd-2.3.3.tar.gz" ], "version": "2.3.3" } ] }, "libgdsii": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "cxx", "gmake", "gnuconfig", "libtool" ], "downloads": [ "https://github.com/HomerReid/libGDSII/archive/refs/tags/v0.21.tar.gz" ], "homepages": [ "https://github.com/HomerReid/libGDSII" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "libgdsii", "patches": [], "summary": "libGDSII is a C++ library for working with GDSII binary data files,\nintended primarily for use with the computational electromagnetism codes\nscuff-em and meep but sufficiently general-purpose to allow other uses\nas well.\n", "version": [ { 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"categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/strukturag/libheif/archive/refs/tags/v1.12.0.tar.gz" ], "homepages": [ "https://github.com/strukturag/libheif" ], "licenses": [ "LGPL-3.0-or-later" ], "maintainers": [], "name": "libheif", "patches": [], "summary": "libheif is an HEIF and AVIF file format decoder and encoder.\n", "version": [ { "downloads": [ "https://github.com/strukturag/libheif/archive/refs/tags/v1.12.0.tar.gz" ], "version": "1.12.0" } ] }, "libhio": { "alias": [], "categories": [], "dependencies": [ "bzip2", "c", "gmake", "gnuconfig", "hdf5", "json-c", "mpi", "pkgconfig" ], "downloads": [ "https://github.com/hpc/libhio/releases/download/hio.master/libhio-master.tar.bz2", "https://github.com/hpc/libhio/releases/download/hio.1.4.1.6/libhio-1.4.1.6.tar.bz2", "https://github.com/hpc/libhio/releases/download/hio.1.4.1.5/libhio-1.4.1.5.tar.bz2", "https://github.com/hpc/libhio/releases/download/hio.1.4.1.4/libhio-1.4.1.4.tar.bz2", "https://github.com/hpc/libhio/releases/download/hio.1.4.1.3/libhio-1.4.1.3.tar.bz2", "https://github.com/hpc/libhio/releases/download/hio.1.4.1.2/libhio-1.4.1.2.tar.bz2", "https://github.com/hpc/libhio/releases/download/hio.1.4.1.1/libhio-1.4.1.1.tar.bz2", "https://github.com/hpc/libhio/releases/download/hio.1.4.1.0/libhio-1.4.1.0.tar.bz2", "https://github.com/hpc/libhio.git" ], "homepages": [ "https://github.com/hpc/libhio" ], "licenses": [], "maintainers": [ "plamborn" ], "name": "libhio", "patches": [ "0001-configury-fix-a-problem-with-bz2-configury.patch when @1.4.1.0", "0001-hdf5-make-docs-optional.patch when @1.4.1.0", "0001-spack-fix-for-spack-to-work-on-non-cray-systems.patch when @1.4.1.2" ], "summary": "libHIO is a flexible, high-performance parallel IO package developed at\nLANL. libHIO supports IO to either a conventional PFS or to Cray\nDataWarp with management of Cray DataWarp space and stage-in and stage-\nout from and to the PFS.\n", "version": [ { "downloads": [ "https://github.com/hpc/libhio/releases/download/hio.1.4.1.0/libhio-1.4.1.0.tar.bz2" ], "version": "1.4.1.0" }, { "downloads": [ "https://github.com/hpc/libhio/releases/download/hio.1.4.1.1/libhio-1.4.1.1.tar.bz2" ], "version": "1.4.1.1" }, { "downloads": [ "https://github.com/hpc/libhio/releases/download/hio.1.4.1.2/libhio-1.4.1.2.tar.bz2" ], "version": "1.4.1.2" }, { "downloads": [ "https://github.com/hpc/libhio/releases/download/hio.1.4.1.3/libhio-1.4.1.3.tar.bz2" ], "version": "1.4.1.3" }, { "downloads": [ "https://github.com/hpc/libhio/releases/download/hio.1.4.1.4/libhio-1.4.1.4.tar.bz2" ], "version": "1.4.1.4" }, { "downloads": [ "https://github.com/hpc/libhio/releases/download/hio.1.4.1.5/libhio-1.4.1.5.tar.bz2" ], "version": "1.4.1.5" }, { "downloads": [ "https://github.com/hpc/libhio/releases/download/hio.1.4.1.6/libhio-1.4.1.6.tar.bz2" ], "version": "1.4.1.6" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/hpc/libhio.git" } ], "version": "master" } ] }, "libhugetlbfs": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool" ], "downloads": [ "https://github.com/libhugetlbfs/libhugetlbfs/releases/download/2.24/libhugetlbfs-2.24.tar.gz" ], "homepages": [ "https://github.com/libhugetlbfs/libhugetlbfs" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "libhugetlbfs", "patches": [], "summary": "libhugetlbfs is a library which provides easy access to huge pages of\nmemory.\n", "version": [ { "downloads": [ "https://github.com/libhugetlbfs/libhugetlbfs/releases/download/2.24/libhugetlbfs-2.24.tar.gz" ], "version": "2.24" } ] }, "libiberty": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gnuconfig" ], "downloads": [ "https://ftpmirror.gnu.org/binutils/binutils-2.41.tar.xz", "https://ftpmirror.gnu.org/binutils/binutils-2.40.tar.xz", "https://ftpmirror.gnu.org/binutils/binutils-2.37.tar.xz", "https://ftpmirror.gnu.org/binutils/binutils-2.36.1.tar.xz", "https://ftpmirror.gnu.org/binutils/binutils-2.36.tar.xz", "https://ftpmirror.gnu.org/binutils/binutils-2.35.2.tar.xz", "https://ftpmirror.gnu.org/binutils/binutils-2.35.1.tar.xz", "https://ftpmirror.gnu.org/binutils/binutils-2.35.tar.xz", "https://ftpmirror.gnu.org/binutils/binutils-2.34.tar.xz", "https://ftpmirror.gnu.org/binutils/binutils-2.33.1.tar.xz", "https://ftpmirror.gnu.org/binutils/binutils-2.32.tar.xz", "https://ftpmirror.gnu.org/binutils/binutils-2.31.1.tar.xz", "https://ftpmirror.gnu.org/binutils/binutils-2.30.tar.xz", "https://ftpmirror.gnu.org/binutils/binutils-2.29.1.tar.xz", "https://ftpmirror.gnu.org/binutils/binutils-2.28.1.tar.xz" ], "homepages": [ "https://www.gnu.org/software/binutils/" ], "licenses": [ "LGPL-2.0-or-later" ], "maintainers": [ "mwkrentel" ], "name": "libiberty", "patches": [], "summary": "The libiberty.a library from GNU binutils. Libiberty provides demangling\nand support functions for the GNU toolchain.\n", "version": [ { "downloads": [ "https://ftpmirror.gnu.org/binutils/binutils-2.28.1.tar.xz" ], "version": "2.28.1" }, { "downloads": [ "https://ftpmirror.gnu.org/binutils/binutils-2.29.1.tar.xz" ], "version": "2.29.1" }, { "downloads": [ "https://ftpmirror.gnu.org/binutils/binutils-2.30.tar.xz" ], "version": "2.30" }, { "downloads": [ "https://ftpmirror.gnu.org/binutils/binutils-2.31.1.tar.xz" ], "version": "2.31.1" }, { "downloads": [ "https://ftpmirror.gnu.org/binutils/binutils-2.32.tar.xz" ], "version": "2.32" }, { "downloads": [ "https://ftpmirror.gnu.org/binutils/binutils-2.33.1.tar.xz" ], "version": "2.33.1" }, { "downloads": [ "https://ftpmirror.gnu.org/binutils/binutils-2.34.tar.xz" ], "version": "2.34" }, { "downloads": [ "https://ftpmirror.gnu.org/binutils/binutils-2.35.tar.xz" ], "version": "2.35" }, { "downloads": [ "https://ftpmirror.gnu.org/binutils/binutils-2.35.1.tar.xz" ], "version": "2.35.1" }, { "downloads": [ "https://ftpmirror.gnu.org/binutils/binutils-2.35.2.tar.xz" ], "version": "2.35.2" }, { "downloads": [ "https://ftpmirror.gnu.org/binutils/binutils-2.36.tar.xz" ], "version": "2.36" }, { "downloads": [ "https://ftpmirror.gnu.org/binutils/binutils-2.36.1.tar.xz" ], "version": "2.36.1" }, { "downloads": [ "https://ftpmirror.gnu.org/binutils/binutils-2.37.tar.xz" ], "version": "2.37" }, { "downloads": [ "https://ftpmirror.gnu.org/binutils/binutils-2.40.tar.xz" ], "version": "2.40" }, { "downloads": [ "https://ftpmirror.gnu.org/binutils/binutils-2.41.tar.xz" ], "version": "2.41" } ] }, "libibumad": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "gmake", "libnl", "ninja" ], "downloads": [ "https://github.com/linux-rdma/rdma-core/archive/v46.0.tar.gz", "https://github.com/linux-rdma/rdma-core/archive/v44.1.tar.gz", "https://github.com/linux-rdma/rdma-core/archive/v25.0.tar.gz" ], "homepages": [ "https://github.com/linux-rdma/" ], "licenses": [ "GPL-2.0-only OR BSD-2-Clause" ], "maintainers": [], "name": "libibumad", "patches": [], "summary": "This package installs the user-space libraries and headers for\nlibibumad. This is a subset of the linux-rdma distribution.\n", "version": [ { "downloads": [ "https://github.com/linux-rdma/rdma-core/archive/v25.0.tar.gz" ], "version": "25.0" }, { "downloads": [ "https://github.com/linux-rdma/rdma-core/archive/v44.1.tar.gz" ], "version": "44.1" }, { "downloads": [ "https://github.com/linux-rdma/rdma-core/archive/v46.0.tar.gz" ], "version": "46.0" } ] }, "libical": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "glib", "gmake", "icu4c", "libxml2", "ninja", "perl", "pkgconfig" ], "downloads": [ "https://github.com/libical/libical/archive/v3.0.18.tar.gz", "https://github.com/libical/libical/archive/v3.0.17.tar.gz", "https://github.com/libical/libical/archive/v3.0.11.tar.gz", "https://github.com/libical/libical/archive/v3.0.8.tar.gz" ], "homepages": [ "https://github.com/libical/libical" ], "licenses": [ "LGPL-2.1-only OR MPL-2.0" ], "maintainers": [], "name": "libical", "patches": [], "summary": "Libical - an implementation of iCalendar protocols and data formats.\n", "version": [ { "downloads": [ "https://github.com/libical/libical/archive/v3.0.11.tar.gz" ], "version": "3.0.11" }, { "downloads": [ "https://github.com/libical/libical/archive/v3.0.17.tar.gz" ], "version": "3.0.17" }, { "downloads": [ "https://github.com/libical/libical/archive/v3.0.18.tar.gz" ], "version": "3.0.18" }, { "downloads": [ "https://github.com/libical/libical/archive/v3.0.8.tar.gz" ], "version": "3.0.8" } ] }, "libicd": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "jpeg", "lerc", "libpng", "ninja" ], "downloads": [ "https://github.com/lucianpls/libicd.git" ], "homepages": [ "https://github.com/lucianpls/libicd" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "libicd", "patches": [], "summary": "Image codec library.\n", "version": [ { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/lucianpls/libicd.git" } ], "version": "main" } ] }, "libice": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libbsd", "pkgconfig", "util-macros", "xproto", "xtrans" ], "downloads": [ "https://www.x.org/archive/individual/lib/libICE-1.1.2.tar.gz", "https://www.x.org/archive/individual/lib/libICE-1.1.1.tar.gz", "https://www.x.org/archive/individual/lib/libICE-1.1.0.tar.gz", "https://www.x.org/archive/individual/lib/libICE-1.0.10.tar.gz", "https://www.x.org/archive/individual/lib/libICE-1.0.9.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libICE" ], "licenses": [ "X11" ], "maintainers": [ "wdconinc" ], "name": "libice", "patches": [], "summary": "libICE - Inter-Client Exchange Library.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libICE-1.0.10.tar.gz" ], "version": "1.0.10" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libICE-1.0.9.tar.gz" ], "version": "1.0.9" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libICE-1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libICE-1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libICE-1.1.2.tar.gz" ], "version": "1.1.2" } ] }, "libiconv": { "alias": [ { "alias_for": "libiconv", "name": "iconv" } ], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://ftpmirror.gnu.org/libiconv/libiconv-1.18.tar.gz", "https://ftpmirror.gnu.org/libiconv/libiconv-1.17.tar.gz", "https://ftpmirror.gnu.org/libiconv/libiconv-1.16.tar.gz", "https://ftpmirror.gnu.org/libiconv/libiconv-1.15.tar.gz", "https://ftpmirror.gnu.org/libiconv/libiconv-1.14.tar.gz" ], "homepages": [ "https://www.gnu.org/software/libiconv/" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "libiconv", "patches": [ "gets.patch when @1.14", "loop_wchar_9eb508.patch when @:1.17" ], "summary": "GNU libiconv provides an implementation of the iconv() function and the\niconv program for character set conversion.\n", "version": [ { "downloads": [ "https://ftpmirror.gnu.org/libiconv/libiconv-1.14.tar.gz" ], "version": "1.14" }, { "downloads": [ "https://ftpmirror.gnu.org/libiconv/libiconv-1.15.tar.gz" ], "version": "1.15" }, { "downloads": [ "https://ftpmirror.gnu.org/libiconv/libiconv-1.16.tar.gz" ], "version": "1.16" }, { "downloads": [ "https://ftpmirror.gnu.org/libiconv/libiconv-1.17.tar.gz" ], "version": "1.17" }, { "downloads": [ "https://ftpmirror.gnu.org/libiconv/libiconv-1.18.tar.gz" ], "version": "1.18" } ] }, "libid3tag": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "gperf", "zlib-api" ], "downloads": [ "ftp://ftp.mars.org/pub/mpeg/libid3tag-0.15.1b.tar.gz" ], "homepages": [ "https://www.underbit.com/products/mad/" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [ "TheQueasle" ], "name": "libid3tag", "patches": [ "10_utf16.diff", "11_unknown_encoding.dif", "CVE-2008-2109.patch", "libid3tag-gperf.patch when ^gperf@3.1:" ], "summary": "library for id3 tagging\n", "version": [ { "downloads": [ "ftp://ftp.mars.org/pub/mpeg/libid3tag-0.15.1b.tar.gz" ], "version": "0.15.1b" } ] }, "libidl": { "alias": [], "categories": [], "dependencies": [ "bison", "c", "flex", "glib", "gmake", "gnuconfig", "pkgconfig" ], "downloads": [ "https://ftp.gnome.org/pub/gnome/sources/libIDL/0.8/libIDL-0.8.14.tar.bz2" ], "homepages": [ "https://developer.gnome.org/" ], "licenses": [ "LGPL-2.0-or-later" ], "maintainers": [], "name": "libidl", "patches": [], "summary": "libraries for Interface Definition Language files\n", "version": [ { "downloads": [ "https://ftp.gnome.org/pub/gnome/sources/libIDL/0.8/libIDL-0.8.14.tar.bz2" ], "version": "0.8.14" } ] }, "libidn": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://ftpmirror.gnu.org/libidn/libidn-1.42.tar.gz", "https://ftpmirror.gnu.org/libidn/libidn-1.38.tar.gz", "https://ftpmirror.gnu.org/libidn/libidn-1.34.tar.gz", "https://ftpmirror.gnu.org/libidn/libidn-1.28.tar.gz" ], "homepages": [ "https://www.gnu.org/software/libidn/" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [ "snehring" ], "name": "libidn", "patches": [], "summary": "GNU Libidn is a fully documented implementation of the Stringprep,\nPunycode and IDNA 2003 specifications. Libidn's purpose is to encode and\ndecode internationalized domain names.\n", "version": [ { "downloads": [ "https://ftpmirror.gnu.org/libidn/libidn-1.28.tar.gz" ], "version": "1.28" }, { "downloads": [ "https://ftpmirror.gnu.org/libidn/libidn-1.34.tar.gz" ], "version": "1.34" }, { "downloads": [ "https://ftpmirror.gnu.org/libidn/libidn-1.38.tar.gz" ], "version": "1.38" }, { "downloads": [ "https://ftpmirror.gnu.org/libidn/libidn-1.42.tar.gz" ], "version": "1.42" } ] }, "libidn2": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libunistring" ], "downloads": [ "https://ftpmirror.gnu.org/libidn/libidn2-2.3.7.tar.gz", "https://ftpmirror.gnu.org/libidn/libidn2-2.3.4.tar.gz", "https://ftpmirror.gnu.org/libidn/libidn2-2.3.3.tar.gz", "https://ftpmirror.gnu.org/libidn/libidn2-2.3.2.tar.gz", "https://ftpmirror.gnu.org/libidn/libidn2-2.3.1.tar.gz", "https://ftpmirror.gnu.org/libidn/libidn2-2.3.0.tar.gz", "https://ftpmirror.gnu.org/libidn/libidn2-2.1.1a.tar.gz", "https://ftpmirror.gnu.org/libidn/libidn2-2.1.1.tar.gz", "https://ftpmirror.gnu.org/libidn/libidn2-2.1.0.tar.gz", "https://ftpmirror.gnu.org/libidn/libidn2-2.0.5.tar.gz" ], "homepages": [ "https://gitlab.com/libidn/libidn2" ], "licenses": [ "GPL-2.0-or-later OR LGPL-3.0-or-later" ], "maintainers": [], "name": "libidn2", "patches": [], "summary": "Libidn2 is a free software implementation of IDNA2008, Punycode and\nTR46. Its purpose is to encode and decode internationalized domain\nnames.\n", "version": [ { "downloads": [ "https://ftpmirror.gnu.org/libidn/libidn2-2.0.5.tar.gz" ], "version": "2.0.5" }, { "downloads": [ "https://ftpmirror.gnu.org/libidn/libidn2-2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://ftpmirror.gnu.org/libidn/libidn2-2.1.1.tar.gz" ], "version": "2.1.1" }, { "downloads": [ "https://ftpmirror.gnu.org/libidn/libidn2-2.1.1a.tar.gz" ], "version": "2.1.1a" }, { "downloads": [ "https://ftpmirror.gnu.org/libidn/libidn2-2.3.0.tar.gz" ], "version": "2.3.0" }, { "downloads": [ "https://ftpmirror.gnu.org/libidn/libidn2-2.3.1.tar.gz" ], "version": "2.3.1" }, { "downloads": [ "https://ftpmirror.gnu.org/libidn/libidn2-2.3.2.tar.gz" ], "version": "2.3.2" }, { "downloads": [ "https://ftpmirror.gnu.org/libidn/libidn2-2.3.3.tar.gz" ], "version": "2.3.3" }, { "downloads": [ "https://ftpmirror.gnu.org/libidn/libidn2-2.3.4.tar.gz" ], "version": "2.3.4" }, { "downloads": [ "https://ftpmirror.gnu.org/libidn/libidn2-2.3.7.tar.gz" ], "version": "2.3.7" } ] }, "libimagequant": { "alias": [], "categories": [], "dependencies": [ "c", "gmake" ], "downloads": [ "https://github.com/ImageOptim/libimagequant/archive/2.12.6.tar.gz" ], "homepages": [ "https://pngquant.org/lib/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "libimagequant", "patches": [], "summary": "Small, portable C library for high-quality conversion of RGBA images to\n8-bit indexed-color (palette) images.\n", "version": [ { "downloads": [ "https://github.com/ImageOptim/libimagequant/archive/2.12.6.tar.gz" ], "version": "2.12.6" } ] }, "libimobiledevice": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "gmake", "gnuconfig", "libplist", "libtasn1", "libtool", "libusbmuxd", "openssl", "pkgconfig" ], "downloads": [ "https://www.libimobiledevice.org/downloads/libimobiledevice-master.tar.bz2", 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It was made for the\nluvit project but should usable from nearly any lua project.\n", "version": [ { "downloads": [ "https://github.com/luvit/luv/releases/download/1.36.0-0/luv-1.36.0-0.tar.gz" ], "version": "1.36.0-0" }, { "downloads": [ "https://github.com/luvit/luv/releases/download/1.42.0-0/luv-1.42.0-0.tar.gz" ], "version": "1.42.0-0" }, { "downloads": [ "https://github.com/luvit/luv/releases/download/1.42.0-1/luv-1.42.0-1.tar.gz" ], "version": "1.42.0-1" }, { "downloads": [ "https://github.com/luvit/luv/releases/download/1.43.0-0/luv-1.43.0-0.tar.gz" ], "version": "1.43.0-0" }, { "downloads": [ "https://github.com/luvit/luv/releases/download/1.44.2-0/luv-1.44.2-0.tar.gz" ], "version": "1.44.2-0" }, { "downloads": [ "https://github.com/luvit/luv/releases/download/1.44.2-1/luv-1.44.2-1.tar.gz" ], "version": "1.44.2-1" }, { "downloads": [ "https://github.com/luvit/luv/releases/download/1.45.0-0/luv-1.45.0-0.tar.gz" ], "version": "1.45.0-0" }, { "downloads": [ "https://github.com/luvit/luv/releases/download/1.48.0-2/luv-1.48.0-2.tar.gz" ], "version": "1.48.0-2" }, { "downloads": [ "https://github.com/luvit/luv/releases/download/1.50.0-1/luv-1.50.0-1.tar.gz" ], "version": "1.50.0-1" } ] }, "liblzf": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "http://dist.schmorp.de/liblzf/liblzf-3.6.tar.gz" ], "homepages": [ "http://oldhome.schmorp.de/marc/liblzf.html" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "liblzf", "patches": [], "summary": "LibLZF is a very small data compression library. It consists of only two\n.c and two .h files and is very easy to incorporate into your own\nprograms. The compression algorithm is very, very fast, yet still\nwritten in portable C.\n", "version": [ { "downloads": [ "http://dist.schmorp.de/liblzf/liblzf-3.6.tar.gz" ], "version": "3.6" } ] }, "libmacaroons": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libsodium", "libtool", "m4" ], "downloads": [ "https://github.com/rescrv/libmacaroons/archive/releases/0.3.0.tar.gz", "https://github.com/rescrv/libmacaroons/archive/releases/0.2.0.tar.gz", "https://github.com/rescrv/libmacaroons/archive/releases/0.1.0.tar.gz" ], "homepages": [ "https://github.com/rescrv/libmacaroons/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "libmacaroons", "patches": [], "summary": " \"This library provides an implementation of macaroons[1], which are\nflexible authorization tokens that work great in distributed systems.\n", "version": [ { "downloads": [ "https://github.com/rescrv/libmacaroons/archive/releases/0.1.0.tar.gz" ], "version": "0.1.0" }, { "downloads": [ "https://github.com/rescrv/libmacaroons/archive/releases/0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://github.com/rescrv/libmacaroons/archive/releases/0.3.0.tar.gz" ], "version": "0.3.0" } ] }, "libmad": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "ftp://ftp.mars.org/pub/mpeg/libmad-0.15.1b.tar.gz" ], "homepages": [ "https://www.underbit.com/products/mad/" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "libmad", "patches": [ "libmad-0.15.1b.patch" ], "summary": "MAD is a high-quality MPEG audio decoder.\n", "version": [ { "downloads": [ "ftp://ftp.mars.org/pub/mpeg/libmad-0.15.1b.tar.gz" ], "version": "0.15.1b" } ] }, "libmatheval": { "alias": [], "categories": [], "dependencies": [ "c", "flex", "gmake", "gnuconfig", "guile" ], "downloads": [ "https://ftpmirror.gnu.org/libmatheval/libmatheval-1.1.11.tar.gz" ], "homepages": [ "https://www.gnu.org/software/libmatheval/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "libmatheval", "patches": [ "guile-2.0.patch when ^guile@2.0", "guile-2.2.patch when ^guile@2.2:" ], "summary": "GNU libmatheval is a library (callable from C and Fortran) to parse and\nevaluate symbolic expressions input as text. It supports expressions in\nany number of variables of arbitrary names, decimal and symbolic\nconstants, basic unary and binary operators, and elementary mathematical\nfunctions. In addition to parsing and evaluation, libmatheval can also\ncompute symbolic derivatives and output expressions to strings.\n", "version": [ { "downloads": [ "https://ftpmirror.gnu.org/libmatheval/libmatheval-1.1.11.tar.gz" ], "version": "1.1.11" } ] }, "libmaus2": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "cxx", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://gitlab.com/german.tischler/libmaus2/-/archive/2.0.767-release-20201123131410/libmaus2-2.0.767-release-20201123131410.tar.gz" ], "homepages": [ "https://gitlab.com/german.tischler/libmaus2" ], "licenses": [], "maintainers": [], "name": "libmaus2", "patches": [], "summary": "libmaus2 is a collection of data structures and algorithmse.\n", "version": [ { "downloads": [ "https://gitlab.com/german.tischler/libmaus2/-/archive/2.0.767-release-20201123131410/libmaus2-2.0.767-release-20201123131410.tar.gz" ], "version": "2.0.767" } ] }, "libmaxminddb": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://github.com/maxmind/libmaxminddb/releases/download/1.9.1/libmaxminddb-1.9.1.tar.gz", "https://github.com/maxmind/libmaxminddb/releases/download/1.7.1/libmaxminddb-1.7.1.tar.gz", "https://github.com/maxmind/libmaxminddb/releases/download/1.3.2/libmaxminddb-1.3.2.tar.gz" ], "homepages": [ "https://github.com/maxmind/libmaxminddb" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "libmaxminddb", "patches": [], "summary": "C library for the MaxMind DB file format\n", "version": [ { "downloads": [ "https://github.com/maxmind/libmaxminddb/releases/download/1.3.2/libmaxminddb-1.3.2.tar.gz" ], "version": "1.3.2" }, { "downloads": [ "https://github.com/maxmind/libmaxminddb/releases/download/1.7.1/libmaxminddb-1.7.1.tar.gz" ], "version": "1.7.1" }, { "downloads": [ "https://github.com/maxmind/libmaxminddb/releases/download/1.9.1/libmaxminddb-1.9.1.tar.gz" ], "version": "1.9.1" } ] }, "libmbim": { "alias": [], 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It supports both Metalink version 3 and Metalink version 4 (RFC\n5854).\n", "version": [ { "downloads": [ "https://github.com/metalink-dev/libmetalink/archive/release-0.1.1.tar.gz" ], "version": "0.1.1" }, { "downloads": [ "https://github.com/metalink-dev/libmetalink/archive/release-0.1.2.tar.gz" ], "version": "0.1.2" }, { "downloads": [ "https://github.com/metalink-dev/libmetalink/archive/release-0.1.3.tar.gz" ], "version": "0.1.3" } ] }, "libmetatensor": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja", "rust" ], "downloads": [ "https://github.com/metatensor/metatensor/releases/download/metatensor-core-v0.1.17/metatensor-core-cxx-0.1.17.tar.gz", "https://github.com/metatensor/metatensor.git" ], "homepages": [ "https://docs.metatensor.org" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "HaoZeke", "luthaf", "rmeli" ], "name": "libmetatensor", "patches": [], "summary": "Self-describing sparse tensor data format for atomistic machine learning\nand beyond.\n", "version": [ { "downloads": [ "https://github.com/metatensor/metatensor/releases/download/metatensor-core-v0.1.17/metatensor-core-cxx-0.1.17.tar.gz" ], "version": "0.1.17" } ] }, "libmetatensor-torch": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "libmetatensor", "ninja", "py-torch" ], "downloads": [ "https://github.com/metatensor/metatensor/releases/download/metatensor-torch-v0.8.2/metatensor-torch-cxx-0.8.2.tar.gz", "https://github.com/metatensor/metatensor/releases/download/metatensor-torch-v0.8.1/metatensor-torch-cxx-0.8.1.tar.gz", "https://github.com/metatensor/metatensor/releases/download/metatensor-torch-v0.8.0/metatensor-torch-cxx-0.8.0.tar.gz", "https://github.com/metatensor/metatensor/releases/download/metatensor-torch-v0.7.6/metatensor-torch-cxx-0.7.6.tar.gz", "https://github.com/metatensor/metatensor.git" ], "homepages": [ "https://docs.metatensor.org" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "HaoZeke", "Luthaf", "RMeli" ], "name": "libmetatensor-torch", "patches": [], "summary": "TorchScript/C++ bindings to metatensor\n", "version": [ { "downloads": [ "https://github.com/metatensor/metatensor/releases/download/metatensor-torch-v0.7.6/metatensor-torch-cxx-0.7.6.tar.gz" ], "version": "0.7.6" }, { "downloads": [ "https://github.com/metatensor/metatensor/releases/download/metatensor-torch-v0.8.0/metatensor-torch-cxx-0.8.0.tar.gz" ], "version": "0.8.0" }, { "downloads": [ "https://github.com/metatensor/metatensor/releases/download/metatensor-torch-v0.8.1/metatensor-torch-cxx-0.8.1.tar.gz" ], "version": "0.8.1" }, { "downloads": [ "https://github.com/metatensor/metatensor/releases/download/metatensor-torch-v0.8.2/metatensor-torch-cxx-0.8.2.tar.gz" ], "version": "0.8.2" } ] }, "libmetatomic-torch": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "libmetatensor-torch", "ninja", "py-torch" ], "downloads": [ 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"patches": [], "summary": "Minimal mDNS resolver (and announcer) cross-platform library.\n", "version": [ { "downloads": [ "https://github.com/videolabs/libmicrodns/releases/download/0.1.1/microdns-0.1.1.tar.xz" ], "version": "0.1.1" }, { "downloads": [ "https://github.com/videolabs/libmicrodns/releases/download/0.1.2/microdns-0.1.2.tar.xz" ], "version": "0.1.2" }, { "downloads": [ "https://github.com/videolabs/libmicrodns/releases/download/0.2.0/microdns-0.2.0.tar.xz" ], "version": "0.2.0" } ] }, "libmicrohttpd": { "alias": [], "categories": [], "dependencies": [ "c", "gettext", "gmake", "gnuconfig", "gnutls", "libgcrypt" ], "downloads": [ "https://ftpmirror.gnu.org/libmicrohttpd/libmicrohttpd-1.0.1.tar.gz", "https://ftpmirror.gnu.org/libmicrohttpd/libmicrohttpd-0.9.77.tar.gz", "https://ftpmirror.gnu.org/libmicrohttpd/libmicrohttpd-0.9.76.tar.gz", "https://ftpmirror.gnu.org/libmicrohttpd/libmicrohttpd-0.9.75.tar.gz", 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This repository holds the C++-03 compatible API,\nencoding and decoding libraries.\n", "version": [ { "downloads": [ "https://github.com/rcsb/mmtf-cpp/archive/v1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://github.com/rcsb/mmtf-cpp/archive/v1.1.0.tar.gz" ], "version": "1.1.0" } ] }, "libmng": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "gnuconfig", "jpeg", "lcms", "ninja", "zlib-api" ], "downloads": [ "https://downloads.sourceforge.net/project/libmng/libmng-devel/2.0.3/libmng-2.0.3.tar.gz", "https://downloads.sourceforge.net/project/libmng/libmng-devel/2.0.2/libmng-2.0.2.tar.gz" ], "homepages": [ "https://sourceforge.net/projects/libmng/" ], "licenses": [ "custom" ], "maintainers": [], "name": "libmng", "patches": [], "summary": "THE reference library for reading, displaying, writing and examining\nMultiple-Image Network Graphics. MNG is the animation extension to the\npopular PNG image format.\n", "version": [ { "downloads": [ "https://downloads.sourceforge.net/project/libmng/libmng-devel/2.0.2/libmng-2.0.2.tar.gz" ], "version": "2.0.2" }, { "downloads": [ "https://downloads.sourceforge.net/project/libmng/libmng-devel/2.0.3/libmng-2.0.3.tar.gz" ], "version": "2.0.3" } ] }, "libmnl": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://netfilter.org/projects/libmnl/files/libmnl-1.0.5.tar.bz2" ], "homepages": [ "https://netfilter.org/projects/libmnl/" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "libmnl", "patches": [], "summary": "libmnl is a minimalistic user-space library oriented to Netlink\ndevelopers. There are a lot of common tasks in parsing, validating,\nconstructing of both the Netlink header and TLVs that are repetitive and\neasy to get wrong. This library aims to provide simple helpers that\nallows you to re-use code and to avoid re-inventing the wheel.\n", "version": [ { "downloads": [ "https://netfilter.org/projects/libmnl/files/libmnl-1.0.5.tar.bz2" ], "version": "1.0.5" } ] }, "libmo-unpack": { "alias": [], "categories": [], "dependencies": [ "c", "check", "cmake", "gmake", "ninja" ], "downloads": [ "https://github.com/SciTools/libmo_unpack/archive/v3.1.2.tar.gz" ], "homepages": [ "https://github.com/SciTools/libmo_unpack" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "libmo-unpack", "patches": [], "summary": "A library for handling the WGDOS and RLE compression schemes used in UM\nfiles.\n", "version": [ { "downloads": [ "https://github.com/SciTools/libmo_unpack/archive/v3.1.2.tar.gz" ], "version": "3.1.2" } ] }, "libmodbus": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://github.com/stephane/libmodbus/releases/download/v3.1.10/libmodbus-3.1.10.tar.gz" ], "homepages": [ "https://libmodbus.org/" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "libmodbus", "patches": [], "summary": "libmodbus is a free software library to send/receive data according to\nthe Modbus protocol.This library is written in C and supports RTU\n(serial) and TCP (Ethernet) communications.\n", "version": [ { "downloads": [ "https://github.com/stephane/libmodbus/releases/download/v3.1.10/libmodbus-3.1.10.tar.gz" ], "version": "3.1.10" } ] }, "libmolgrid": { "alias": [], "categories": [], "dependencies": [ "boost", "cmake", "cuda", "cxx", "gmake", "ninja", "openbabel", "py-numpy", "py-pytest", "python", "zlib-api" ], "downloads": [ "https://github.com/gnina/libmolgrid/archive/refs/tags/v0.5.5.tar.gz", "https://github.com/gnina/libmolgrid/archive/refs/tags/v0.5.4.tar.gz", "https://github.com/gnina/libmolgrid/archive/refs/tags/v0.5.3.tar.gz", "https://github.com/gnina/libmolgrid/archive/refs/tags/v0.5.2.tar.gz" ], "homepages": [ "https://gnina.github.io/libmolgrid/" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "RMeli" ], "name": "libmolgrid", "patches": [], "summary": "libmolgrid is a library to generate tensors from molecular data, with\nproperties that make its output particularly suited to machine learning.\n", "version": [ { "downloads": [ "https://github.com/gnina/libmolgrid/archive/refs/tags/v0.5.2.tar.gz" ], "version": "0.5.2" }, { "downloads": [ "https://github.com/gnina/libmolgrid/archive/refs/tags/v0.5.3.tar.gz" ], "version": "0.5.3" }, { "downloads": [ "https://github.com/gnina/libmolgrid/archive/refs/tags/v0.5.4.tar.gz" ], "version": "0.5.4" }, { "downloads": [ "https://github.com/gnina/libmolgrid/archive/refs/tags/v0.5.5.tar.gz" ], "version": "0.5.5" } ] }, "libmonitor": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://github.com/HPCToolkit/libmonitor.git" ], "homepages": [ "https://github.com/HPCToolkit/libmonitor" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "mwkrentel" ], "name": "libmonitor", "patches": [ "libmonitorkrell-0001.patch when @2013.02.18+commrank", "libmonitorkrell-0002.patch when @2013.02.18+commrank", "add-monitor-comm-rank-notification.patch when @2020.10.15+commrank" ], "summary": "Libmonitor is a library providing callback functions for the begin and\nend of processes and threads. It provides a layer on which to build\nprocess monitoring tools and profilers.\n", "version": [ { "repositories": [ { "commit": "4f2311e413fd90583263d6f20453bbe552ccfef3", "type": "git", "url": "https://github.com/HPCToolkit/libmonitor.git" } ], "version": "2013.02.18" }, { "repositories": [ { "commit": "d28cc1d3c08c02013a68a022a57a6ac73db88166", "type": "git", "url": "https://github.com/HPCToolkit/libmonitor.git" } ], "version": "2018.07.18" }, { "repositories": [ { "commit": "c9767087d52e58a719aa7f149136b101e499db44", "type": "git", "url": "https://github.com/HPCToolkit/libmonitor.git" } ], "version": "2019.05.31" }, { "repositories": [ { "commit": "36e5cb7ebeadfff01476b79ff04f6ec772ba831d", "type": "git", "url": "https://github.com/HPCToolkit/libmonitor.git" } ], "version": "2020.10.15" }, { "repositories": [ { "commit": "a2d1b6be23410ef1ad2c9d0006672453803243c2", "type": "git", "url": "https://github.com/HPCToolkit/libmonitor.git" } ], "version": "2021.04.27" }, { "repositories": [ { "commit": "22aa52c621534f12d401fa37f6963bfca7441e20", "type": "git", "url": "https://github.com/HPCToolkit/libmonitor.git" } ], "version": "2021.11.08" }, { "repositories": [ { "commit": "4ae16dab0ba5fbda0ffe28df523613ea22cb85ae", "type": "git", "url": "https://github.com/HPCToolkit/libmonitor.git" } ], "version": "2022.09.02" }, { "repositories": [ { "commit": "6db182b25202552f75a087116ab57193652d150f", "type": "git", "url": "https://github.com/HPCToolkit/libmonitor.git" } ], "version": "2023.02.13" }, { "repositories": [ { "commit": "48520940b915352748950ea718fadc82f87f659d", "type": "git", "url": "https://github.com/HPCToolkit/libmonitor.git" } ], "version": "2023.03.15" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/HPCToolkit/libmonitor.git" } ], "version": "master" } ] }, "libmpdclient": { "alias": [], "categories": [], "dependencies": [ "c", "meson", "ninja", "pkgconfig" ], "downloads": [ "https://github.com/MusicPlayerDaemon/libmpdclient/archive/v2.19.tar.gz", "https://github.com/MusicPlayerDaemon/libmpdclient/archive/v2.18.tar.gz", "https://github.com/MusicPlayerDaemon/libmpdclient/archive/v2.17.tar.gz", "https://github.com/MusicPlayerDaemon/libmpdclient/archive/v2.16.tar.gz", "https://github.com/MusicPlayerDaemon/libmpdclient/archive/v2.15.tar.gz" ], "homepages": [ "https://www.musicpd.org/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "libmpdclient", "patches": [], "summary": "Libmpdclient is a C library which implements the Music Player Daemon\nprotocol.\n", "version": [ { "downloads": [ "https://github.com/MusicPlayerDaemon/libmpdclient/archive/v2.15.tar.gz" ], "version": "2.15" }, { "downloads": [ "https://github.com/MusicPlayerDaemon/libmpdclient/archive/v2.16.tar.gz" ], "version": "2.16" }, { "downloads": [ "https://github.com/MusicPlayerDaemon/libmpdclient/archive/v2.17.tar.gz" ], "version": "2.17" }, { "downloads": [ "https://github.com/MusicPlayerDaemon/libmpdclient/archive/v2.18.tar.gz" ], "version": "2.18" }, { "downloads": [ "https://github.com/MusicPlayerDaemon/libmpdclient/archive/v2.19.tar.gz" ], "version": "2.19" } ] }, "libmypaint": { "alias": [], "categories": [], "dependencies": [ "babl", "c", "gegl", "gettext", "glib", "gmake", "gnuconfig", "gobject-introspection", "intltool", "json-c", "perl", "perl-xml-parser", "pkgconfig" ], "downloads": [ "https://github.com/mypaint/libmypaint/releases/download/v1.6.1/libmypaint-1.6.1.tar.xz", "https://github.com/mypaint/libmypaint/releases/download/v1.6.0/libmypaint-1.6.0.tar.xz", "https://github.com/mypaint/libmypaint/releases/download/v1.5.1/libmypaint-1.5.1.tar.xz", "https://github.com/mypaint/libmypaint/releases/download/v1.4.0/libmypaint-1.4.0.tar.xz", "https://github.com/mypaint/libmypaint/releases/download/v1.3.0/libmypaint-1.3.0.tar.xz" ], "homepages": [ "https://github.com/mypaint/libmypaint" ], "licenses": [ "ISC" ], "maintainers": [ "benkirk" ], "name": "libmypaint", "patches": [], "summary": "libmypaint - MyPaint brush engine library. This is the brush library\nused by MyPaint. A number of other painting programs use it too.\n", "version": [ { "downloads": [ "https://github.com/mypaint/libmypaint/releases/download/v1.3.0/libmypaint-1.3.0.tar.xz" ], "version": "1.3.0" }, { "downloads": [ "https://github.com/mypaint/libmypaint/releases/download/v1.4.0/libmypaint-1.4.0.tar.xz" ], "version": "1.4.0" }, { "downloads": [ "https://github.com/mypaint/libmypaint/releases/download/v1.5.1/libmypaint-1.5.1.tar.xz" ], "version": "1.5.1" }, { "downloads": [ "https://github.com/mypaint/libmypaint/releases/download/v1.6.0/libmypaint-1.6.0.tar.xz" ], "version": "1.6.0" }, { "downloads": [ "https://github.com/mypaint/libmypaint/releases/download/v1.6.1/libmypaint-1.6.1.tar.xz" ], "version": "1.6.1" } ] }, "libnbc": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "mpi" ], "downloads": [ "http://unixer.de/research/nbcoll/libnbc/libNBC-1.1.1.tar.gz" ], "homepages": [ "http://unixer.de/research/nbcoll/libnbc/" ], "licenses": [ "BSD-3-Clause-Open-MPI" ], "maintainers": [], "name": "libnbc", "patches": [], "summary": "LibNBC is a prototypic implementation of a nonblocking interface for MPI\ncollective operations. Based on ANSI C and MPI-1, it supports all MPI-1\ncollective operations in a nonblocking manner. LibNBC is distributed\nunder the BSD license.\n", "version": [ { "downloads": [ "http://unixer.de/research/nbcoll/libnbc/libNBC-1.1.1.tar.gz" ], "version": "1.1.1" } ] }, "libndp": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://github.com/jpirko/libndp/archive/v1.7.tar.gz", "https://github.com/jpirko/libndp/archive/v1.6.tar.gz", "https://github.com/jpirko/libndp/archive/v1.5.tar.gz", "https://github.com/jpirko/libndp/archive/v1.4.tar.gz", "https://github.com/jpirko/libndp/archive/v1.3.tar.gz" ], "homepages": [ "http://www.libndp.org/" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "libndp", "patches": [], "summary": "Libndp - Library for Neighbor Discovery Protocol\n", "version": [ { "downloads": [ "https://github.com/jpirko/libndp/archive/v1.3.tar.gz" ], "version": "1.3" }, { "downloads": [ "https://github.com/jpirko/libndp/archive/v1.4.tar.gz" ], "version": "1.4" }, { "downloads": [ "https://github.com/jpirko/libndp/archive/v1.5.tar.gz" ], "version": "1.5" }, { "downloads": [ "https://github.com/jpirko/libndp/archive/v1.6.tar.gz" ], "version": "1.6" }, { "downloads": [ "https://github.com/jpirko/libndp/archive/v1.7.tar.gz" ], "version": "1.7" } ] }, "libnet": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://github.com/libnet/libnet/archive/v1.3.tar.gz", "https://github.com/libnet/libnet/archive/v1.2.tar.gz" ], "homepages": [ "https://github.com/libnet/libnet" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "libnet", "patches": [], "summary": "Libnet is an API to help with the construction and handling of network\npackets. It provides a portable framework for low-level network packet\nwriting and handling\n", "version": [ { "downloads": [ "https://github.com/libnet/libnet/archive/v1.2.tar.gz" ], "version": "1.2" }, { "downloads": [ "https://github.com/libnet/libnet/archive/v1.3.tar.gz" ], "version": "1.3" } ] }, "libnetfilter-conntrack": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libmnl", "libnfnetlink", "libtool", "m4", "pkgconfig" ], "downloads": [ "https://www.netfilter.org/projects/libnetfilter_conntrack/files/libnetfilter_conntrack-1.0.9.tar.bz2", "https://www.netfilter.org/projects/libnetfilter_conntrack/files/libnetfilter_conntrack-1.0.8.tar.bz2", "https://www.netfilter.org/projects/libnetfilter_conntrack/files/libnetfilter_conntrack-1.0.7.tar.bz2", "https://www.netfilter.org/projects/libnetfilter_conntrack/files/libnetfilter_conntrack-1.0.6.tar.bz2", "https://www.netfilter.org/projects/libnetfilter_conntrack/files/libnetfilter_conntrack-1.0.5.tar.bz2" ], "homepages": [ "https://netfilter.org/projects/libnetfilter_conntrack/" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "libnetfilter-conntrack", "patches": [], "summary": "libnetfilter_conntrack is a userspace library providing a programming\ninterface (API) to the in-kernel connection tracking state table.\n", "version": [ { "downloads": [ "https://www.netfilter.org/projects/libnetfilter_conntrack/files/libnetfilter_conntrack-1.0.5.tar.bz2" ], "version": "1.0.5" }, { "downloads": [ "https://www.netfilter.org/projects/libnetfilter_conntrack/files/libnetfilter_conntrack-1.0.6.tar.bz2" ], "version": "1.0.6" }, { "downloads": [ "https://www.netfilter.org/projects/libnetfilter_conntrack/files/libnetfilter_conntrack-1.0.7.tar.bz2" ], "version": "1.0.7" }, { "downloads": [ "https://www.netfilter.org/projects/libnetfilter_conntrack/files/libnetfilter_conntrack-1.0.8.tar.bz2" ], "version": "1.0.8" }, { "downloads": [ "https://www.netfilter.org/projects/libnetfilter_conntrack/files/libnetfilter_conntrack-1.0.9.tar.bz2" ], "version": "1.0.9" } ] }, "libnetfilter-cthelper": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libmnl", "libtool", "m4", "pkgconfig" ], "downloads": [ "https://www.netfilter.org/projects/libnetfilter_cthelper/files/libnetfilter_cthelper-1.0.1.tar.bz2" ], "homepages": [ "https://netfilter.org/projects/libnetfilter_cthelper/" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "libnetfilter-cthelper", "patches": [], "summary": "Libnetfilter-cthelper library for user space helpers / ALGs\n", "version": [ { "downloads": [ "https://www.netfilter.org/projects/libnetfilter_cthelper/files/libnetfilter_cthelper-1.0.1.tar.bz2" ], "version": "1.0.1" } ] }, "libnetfilter-cttimeout": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libmnl", "libtool", "m4", "pkgconfig" ], "downloads": [ "https://www.netfilter.org/projects/libnetfilter_cttimeout/files/libnetfilter_cttimeout-1.0.1.tar.bz2" ], "homepages": [ "https://netfilter.org/projects/libnetfilter_cttimeout/" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "libnetfilter-cttimeout", "patches": [], "summary": "Conntrack timeout policy library.\n", "version": [ { "downloads": [ "https://www.netfilter.org/projects/libnetfilter_cttimeout/files/libnetfilter_cttimeout-1.0.1.tar.bz2" ], "version": "1.0.1" } ] }, "libnetfilter-queue": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libmnl", "libnfnetlink", "libtool", "m4", "pkgconfig" ], "downloads": [ "https://www.netfilter.org/projects/libnetfilter_queue/files/libnetfilter_queue-1.0.5.tar.bz2" ], "homepages": [ "https://netfilter.org/projects/libnetfilter_queue/" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "libnetfilter-queue", "patches": [], "summary": "Libnetfilter-queue libnetfilter queue library.\n", "version": [ { "downloads": [ "https://www.netfilter.org/projects/libnetfilter_queue/files/libnetfilter_queue-1.0.5.tar.bz2" ], "version": "1.0.5" } ] }, "libnetworkit": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "gmake", "libtlx", "llvm-openmp", "ninja", "py-sphinx" ], "downloads": [ "https://github.com/networkit/networkit/archive/9.0.tar.gz", "https://github.com/networkit/networkit/archive/8.1.tar.gz", "https://github.com/networkit/networkit/archive/8.0.tar.gz", "https://github.com/networkit/networkit/archive/7.1.tar.gz", "https://github.com/networkit/networkit/archive/7.0.tar.gz", "https://github.com/networkit/networkit/archive/6.1.tar.gz" ], "homepages": [ "https://networkit.github.io/" ], "licenses": [ "MIT" ], "maintainers": [ "fabratu" ], "name": "libnetworkit", "patches": [ "0001-Name-agnostic-import-of-tlx-library.patch when @6.1:8.1", "0001-Name-agnostic-import-of-tlx-library-90.patch when @9.0:" ], "summary": "NetworKit is a growing open-source toolkit for large-scale network\nanalysis. Its aim is to provide tools for the analysis of large networks\nin the size range from thousands to billions of edges. For this purpose,\nit implements efficient graph algorithms, many of them parallel to\nutilize multicore architectures. These are meant to compute standard\nmeasures of network analysis, such as degree sequences, clustering\ncoefficients, and centrality measures. In this respect, NetworKit is\ncomparable to packages such as NetworkX, albeit with a focus on\nparallelism and scalability.\n", "version": [ { "downloads": [ "https://github.com/networkit/networkit/archive/6.1.tar.gz" ], "version": "6.1" }, { "downloads": [ "https://github.com/networkit/networkit/archive/7.0.tar.gz" ], "version": "7.0" }, { "downloads": [ "https://github.com/networkit/networkit/archive/7.1.tar.gz" ], "version": "7.1" }, { "downloads": [ "https://github.com/networkit/networkit/archive/8.0.tar.gz" ], "version": "8.0" }, { "downloads": [ "https://github.com/networkit/networkit/archive/8.1.tar.gz" ], "version": "8.1" }, { "downloads": [ "https://github.com/networkit/networkit/archive/9.0.tar.gz" ], "version": "9.0" } ] }, "libnfnetlink": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://netfilter.org/projects/libnfnetlink/files/libnfnetlink-1.0.2.tar.bz2" ], "homepages": [ "https://netfilter.org/projects/libnfnetlink/" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "libnfnetlink", "patches": [], "summary": "libnfnetlink is a userspace library that provides some low-level\nnfnetlink handling functions. It is used as a foundation for other,\nnetfilter subsystem specific libraries such as libnfnetlink_conntrack,\nlibnfnetlink_log and libnfnetlink_queue.\n", "version": [ { "downloads": [ "https://netfilter.org/projects/libnfnetlink/files/libnfnetlink-1.0.2.tar.bz2" ], "version": "1.0.2" } ] }, "libnfs": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "gmake", "ninja" ], "downloads": [ "https://github.com/sahlberg/libnfs/archive/libnfs-4.0.0.tar.gz", "https://github.com/sahlberg/libnfs/archive/libnfs-3.0.0.tar.gz", "https://github.com/sahlberg/libnfs/archive/libnfs-2.0.0.tar.gz", "https://github.com/sahlberg/libnfs/archive/libnfs-1.11.0.tar.gz", "https://github.com/sahlberg/libnfs/archive/libnfs-1.10.0.tar.gz" ], "homepages": [ "https://sites.google.com/site/libnfstarballs/" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "libnfs", "patches": [], "summary": "LIBNFS is a client library for accessing NFS shares over a network.\n", "version": [ { "downloads": [ "https://github.com/sahlberg/libnfs/archive/libnfs-1.10.0.tar.gz" ], "version": "1.10.0" }, { "downloads": [ "https://github.com/sahlberg/libnfs/archive/libnfs-1.11.0.tar.gz" ], "version": "1.11.0" }, { "downloads": [ "https://github.com/sahlberg/libnfs/archive/libnfs-2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://github.com/sahlberg/libnfs/archive/libnfs-3.0.0.tar.gz" ], "version": "3.0.0" }, { "downloads": [ "https://github.com/sahlberg/libnfs/archive/libnfs-4.0.0.tar.gz" ], "version": "4.0.0" } ] }, "libnfsidmap": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://github.com/Distrotech/libnfsidmap/archive/libnfsidmap-0-26.tar.gz", "https://github.com/Distrotech/libnfsidmap/archive/libnfsidmap-0-25.tar.gz" ], "homepages": [ "https://github.com/Distrotech/libnfsidmap/" ], "licenses": [], "maintainers": [], "name": "libnfsidmap", "patches": [], "summary": 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The PKCS #11 API is mainly used to access\nobjects in smart cards and Hardware or Software Security Modules (HSMs).\nThat is because in these modules the cryptographic keys are isolated in\nhardware or software and are not made available to the applications\nusing them.\n", "version": [ { "downloads": [ "https://github.com/OpenSC/libp11/archive/libp11-0.4.10.tar.gz" ], "version": "0.4.10" }, { "downloads": [ "https://github.com/OpenSC/libp11/archive/libp11-0.4.11.tar.gz" ], "version": "0.4.11" }, { "downloads": [ "https://github.com/OpenSC/libp11/archive/libp11-0.4.12.tar.gz" ], "version": "0.4.12" }, { "downloads": [ "https://github.com/OpenSC/libp11/archive/libp11-0.4.8.tar.gz" ], "version": "0.4.8" }, { "downloads": [ "https://github.com/OpenSC/libp11/archive/libp11-0.4.9.tar.gz" ], "version": "0.4.9" } ] }, "libpam": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "linux-pam", "m4" ], "downloads": [ 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Compared to similar libraries, libvips runs quickly and uses\nlittle memory.\n", "version": [ { "downloads": [ "https://github.com/libvips/libvips/releases/download/v8.10.5/vips-8.10.5.tar.gz" ], "version": "8.10.5" }, { "downloads": [ "https://github.com/libvips/libvips/releases/download/v8.13.3/vips-8.13.3.tar.gz" ], "version": "8.13.3" }, { "downloads": [ "https://github.com/libvips/libvips/releases/download/v8.15.3/vips-8.15.3.tar.xz" ], "version": "8.15.3" }, { "downloads": [ "https://github.com/libvips/libvips/releases/download/v8.9.0/vips-8.9.0.tar.gz" ], "version": "8.9.0" }, { "downloads": [ "https://github.com/libvips/libvips/releases/download/v8.9.1/vips-8.9.1.tar.gz" ], "version": "8.9.1" } ] }, "libvorbis": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libogg", "pkgconfig" ], "downloads": [ "http://downloads.xiph.org/releases/vorbis/libvorbis-1.3.7.tar.gz", "http://downloads.xiph.org/releases/vorbis/libvorbis-1.3.5.tar.gz" ], "homepages": [ "https://xiph.org/vorbis/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "libvorbis", "patches": [], "summary": "Ogg Vorbis is a fully open, non-proprietary, patent-and-royalty-free,\ngeneral-purpose compressed audio format for mid to high quality (8kHz-\n48.0kHz, 16+ bit, polyphonic) audio and music at fixed and variable\nbitrates from 16 to 128 kbps/channel.\n", "version": [ { "downloads": [ "http://downloads.xiph.org/releases/vorbis/libvorbis-1.3.5.tar.gz" ], "version": "1.3.5" }, { "downloads": [ "http://downloads.xiph.org/releases/vorbis/libvorbis-1.3.7.tar.gz" ], "version": "1.3.7" } ] }, "libvori": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://www.cp2k.org/static/downloads/libvori-220621.tar.gz", "https://www.cp2k.org/static/downloads/libvori-210412.tar.gz", "https://www.cp2k.org/static/downloads/libvori-201229.tar.gz", "https://www.cp2k.org/static/downloads/libvori-201224.tar.gz", "https://www.cp2k.org/static/downloads/libvori-201217.tar.gz" ], "homepages": [ "https://brehm-research.de/voronoi.php" ], "licenses": [ "LGPL-3.0-only" ], "maintainers": [ "dev-zero", "mtaillefumier" ], "name": "libvori", "patches": [], "summary": "Support for Voronoi Integration and lossless BQB compression\n", "version": [ { "downloads": [ "https://www.cp2k.org/static/downloads/libvori-201217.tar.gz" ], "version": "201217" }, { "downloads": [ "https://www.cp2k.org/static/downloads/libvori-201224.tar.gz" ], "version": "201224" }, { "downloads": [ "https://www.cp2k.org/static/downloads/libvori-201229.tar.gz" ], "version": "201229" }, { "downloads": [ "https://www.cp2k.org/static/downloads/libvori-210412.tar.gz" ], "version": "210412" }, { "downloads": [ "https://www.cp2k.org/static/downloads/libvori-220621.tar.gz" ], "version": "220621" } ] }, "libvpx": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gnuconfig", "yasm" ], "downloads": [ "https://github.com/webmproject/libvpx/archive/refs/tags/v1.14.1.tar.gz" ], "homepages": [ "https://chromium.googlesource.com/webm/libvpx" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "libvpx", "patches": [], "summary": "libvpx is a free software video codec library from Google and the\nAlliance for Open Media. It serves as the reference software\nimplementation for the VP8 and VP9 video coding formats, and for AV1 a\nspecial fork named libaom that was stripped of backwards compatibility.\n", "version": [ { "downloads": [ "https://github.com/webmproject/libvpx/archive/refs/tags/v1.14.1.tar.gz" ], "version": "1.14.1" } ] }, "libvterm": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "libtool" ], "downloads": [], "homepages": [ "http://www.leonerd.org.uk/code/libvterm/" ], "licenses": [ "MIT" ], "maintainers": [ "fthaler" ], "name": "libvterm", "patches": [], "summary": "An abstract library implementation of a terminal emulator\n", "version": [ { "downloads": [ "https://launchpad.net/libvterm/trunk/v0.1/+download/libvterm-0.1.3.tar.gz" ], "version": "0.1.3" }, { "downloads": [ "https://launchpad.net/libvterm/trunk/v0.1/+download/libvterm-0.1.4.tar.gz" ], "version": "0.1.4" }, { "downloads": [ "https://launchpad.net/libvterm/trunk/v0.2/+download/libvterm-0.2.tar.gz" ], "version": "0.2" }, { "downloads": [ "https://launchpad.net/libvterm/trunk/v0.3/+download/libvterm-0.3.tar.gz" ], "version": "0.3" }, { "downloads": [ "https://launchpad.net/libvterm/trunk/v0.3/+download/libvterm-0.3.1.tar.gz" ], "version": "0.3.1" }, { "downloads": [ "https://launchpad.net/libvterm/trunk/v0.3/+download/libvterm-0.3.3.tar.gz" ], "version": "0.3.3" } ] }, "libwebp": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "cxx", "giflib", "gmake", "gnuconfig", "jpeg", "libpng", "libtiff", "libtool", "m4" ], "downloads": [ "https://storage.googleapis.com/downloads.webmproject.org/releases/webp/libwebp-1.4.0.tar.gz", "https://storage.googleapis.com/downloads.webmproject.org/releases/webp/libwebp-1.3.2.tar.gz", "https://storage.googleapis.com/downloads.webmproject.org/releases/webp/libwebp-1.3.1.tar.gz", "https://storage.googleapis.com/downloads.webmproject.org/releases/webp/libwebp-1.3.0.tar.gz", "https://storage.googleapis.com/downloads.webmproject.org/releases/webp/libwebp-1.2.4.tar.gz", "https://storage.googleapis.com/downloads.webmproject.org/releases/webp/libwebp-1.2.3.tar.gz", "https://storage.googleapis.com/downloads.webmproject.org/releases/webp/libwebp-1.2.2.tar.gz", "https://storage.googleapis.com/downloads.webmproject.org/releases/webp/libwebp-1.2.0.tar.gz", "https://storage.googleapis.com/downloads.webmproject.org/releases/webp/libwebp-1.0.3.tar.gz" ], "homepages": [ "https://developers.google.com/speed/webp/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "libwebp", "patches": [], "summary": "WebP is a modern image format that provides superior lossless and lossy\ncompression for images on the web. Using WebP, webmasters and web\ndevelopers can create smaller, richer images that make the web faster.\n", "version": [ { "downloads": [ "https://storage.googleapis.com/downloads.webmproject.org/releases/webp/libwebp-1.0.3.tar.gz" ], "version": "1.0.3" }, { "downloads": [ "https://storage.googleapis.com/downloads.webmproject.org/releases/webp/libwebp-1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://storage.googleapis.com/downloads.webmproject.org/releases/webp/libwebp-1.2.2.tar.gz" ], "version": "1.2.2" }, { "downloads": [ "https://storage.googleapis.com/downloads.webmproject.org/releases/webp/libwebp-1.2.3.tar.gz" ], "version": "1.2.3" }, { "downloads": [ "https://storage.googleapis.com/downloads.webmproject.org/releases/webp/libwebp-1.2.4.tar.gz" ], "version": "1.2.4" }, { "downloads": [ "https://storage.googleapis.com/downloads.webmproject.org/releases/webp/libwebp-1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://storage.googleapis.com/downloads.webmproject.org/releases/webp/libwebp-1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://storage.googleapis.com/downloads.webmproject.org/releases/webp/libwebp-1.3.2.tar.gz" ], "version": "1.3.2" }, { "downloads": [ "https://storage.googleapis.com/downloads.webmproject.org/releases/webp/libwebp-1.4.0.tar.gz" ], "version": "1.4.0" } ] }, "libwebsockets": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja", "openssl", "zlib-api" ], "downloads": [ "https://github.com/warmcat/libwebsockets/archive/v4.3.3.tar.gz", "https://github.com/warmcat/libwebsockets/archive/v2.2.1.tar.gz", "https://github.com/warmcat/libwebsockets/archive/v2.1.1.tar.gz", "https://github.com/warmcat/libwebsockets/archive/v2.1.0.tar.gz", "https://github.com/warmcat/libwebsockets/archive/v2.0.3.tar.gz", "https://github.com/warmcat/libwebsockets/archive/v1.7.9.tar.gz" ], "homepages": [ "https://github.com/warmcat/libwebsockets" ], "licenses": [ "MIT" ], "maintainers": [ "ax3l" ], "name": "libwebsockets", "patches": [], "summary": "C library for lightweight websocket clients and servers.\n", "version": [ { "downloads": [ "https://github.com/warmcat/libwebsockets/archive/v1.7.9.tar.gz" ], "version": "1.7.9" }, { "downloads": [ "https://github.com/warmcat/libwebsockets/archive/v2.0.3.tar.gz" ], "version": "2.0.3" }, { "downloads": [ "https://github.com/warmcat/libwebsockets/archive/v2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://github.com/warmcat/libwebsockets/archive/v2.1.1.tar.gz" ], "version": "2.1.1" }, { "downloads": [ "https://github.com/warmcat/libwebsockets/archive/v2.2.1.tar.gz" ], "version": "2.2.1" }, { "downloads": [ "https://github.com/warmcat/libwebsockets/archive/v4.3.3.tar.gz" ], "version": "4.3.3" } ] }, "libwhich": { "alias": [], "categories": [], "dependencies": [ "c", "gmake" ], "downloads": [ "https://github.com/vtjnash/libwhich/archive/refs/tags/vmaster.tar.gz", "https://github.com/vtjnash/libwhich/archive/refs/tags/v1.1.0.tar.gz", "https://github.com/vtjnash/libwhich/archive/refs/tags/v1.0.0.tar.gz", "https://github.com/vtjnash/libwhich.git" ], "homepages": [ "https://github.com/vtjnash/libwhich" ], "licenses": [ "MIT" ], "maintainers": [ "dmageeLANL" ], "name": "libwhich", "patches": [], "summary": " Libwhich: the functionality of which for libraries.\n", "version": [ { "downloads": [ "https://github.com/vtjnash/libwhich/archive/refs/tags/v1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://github.com/vtjnash/libwhich/archive/refs/tags/v1.1.0.tar.gz" ], "version": "1.1.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/vtjnash/libwhich.git" } ], "version": "master" } ] }, "libwindowswm": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxext", "pkgconfig", "util-macros", "windowswmproto", "xextproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/libWindowsWM-1.0.1.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libWindowsWM" ], "licenses": [ "MIT" ], "maintainers": [], "name": "libwindowswm", "patches": [], "summary": "WindowsWM - Cygwin/X rootless window management extension. WindowsWM is\na simple library designed to interface with the Windows-WM extension.\nThis extension allows X window managers to better interact with the\nCygwin XWin server when running X11 in a rootless mode.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libWindowsWM-1.0.1.tar.gz" ], "version": "1.0.1" } ] }, "libwmf": { "alias": [], "categories": [], "dependencies": [ "c", "expat", "freetype", "gdk-pixbuf", "ghostscript-fonts", "gmake", "gnuconfig", "libjpeg", "libpng", "libxml2", "pkgconfig", "zlib-api" ], "downloads": [ "https://github.com/caolanm/libwmf/archive/refs/tags/v0.2.13.tar.gz", "https://github.com/caolanm/libwmf/archive/refs/tags/v0.2.12.tar.gz", "https://github.com/caolanm/libwmf/archive/refs/tags/v0.2.11.tar.gz" ], "homepages": [ "https://github.com/caolanm/libwmf" ], "licenses": [ "LGPL-2.0-or-later" ], "maintainers": [ "benkirk" ], "name": "libwmf", "patches": [ "https://github.com/caolanm/libwmf/commit/1f87c35bc2a36fdca760a4577761d30d9cc876e2.patch?full_index=1 when @:0.2.13" ], "summary": "libwmf is a library for reading vector images in Microsft's native\nWindows Metafile Format (WMF)\n", "version": [ { "downloads": [ "https://github.com/caolanm/libwmf/archive/refs/tags/v0.2.11.tar.gz" ], "version": "0.2.11" }, { "downloads": [ "https://github.com/caolanm/libwmf/archive/refs/tags/v0.2.12.tar.gz" ], "version": "0.2.12" }, { "downloads": [ "https://github.com/caolanm/libwmf/archive/refs/tags/v0.2.13.tar.gz" ], "version": "0.2.13" } ] }, "libwnck": { "alias": [], "categories": [], "dependencies": [ "cairo", "cmake", "gdk-pixbuf", "gettext", "glib", "gmake", "gnuconfig", "gobject-introspection", "gtk-doc", "gtkplus", "intltool", "libxres", "meson", "ninja", "pkgconfig", "startup-notification" ], "downloads": [ "https://download.gnome.org/sources/libwnck/3.4/libwnck-3.4.9.tar.xz" ], "homepages": [ "https://gitlab.gnome.org/GNOME/libwnck" ], "licenses": [ "GPLv2" ], "maintainers": [], "name": "libwnck", "patches": [], "summary": "Window Navigator Construction Kit\n", "version": [ { "downloads": [ "https://download.gnome.org/sources/libwnck/3.14/libwnck-3.14.1.tar.xz" ], "version": "3.14.1" }, { "downloads": [ "https://download.gnome.org/sources/libwnck/3.20/libwnck-3.20.1.tar.xz" ], "version": "3.20.1" }, { "downloads": [ "https://download.gnome.org/sources/libwnck/3.24/libwnck-3.24.1.tar.xz" ], "version": "3.24.1" }, { "downloads": [ "https://download.gnome.org/sources/libwnck/3.36/libwnck-3.36.0.tar.xz" ], "version": "3.36.0" }, { "downloads": [ "https://download.gnome.org/sources/libwnck/3.4/libwnck-3.4.9.tar.xz" ], "version": "3.4.9" }, { "downloads": [ "https://download.gnome.org/sources/libwnck/40/libwnck-40.1.tar.xz" ], "version": "40.1" }, { "downloads": [ "https://download.gnome.org/sources/libwnck/43/libwnck-43.0.tar.xz" ], "version": "43.0" }, { "downloads": [ "https://download.gnome.org/sources/libwnck/43/libwnck-43.2.tar.xz" ], "version": "43.2" } ] }, "libx11": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "inputproto", "kbproto", "libxcb", "perl", "pkgconfig", "util-macros", "xextproto", "xproto", "xtrans" ], "downloads": [ "https://www.x.org/archive/individual/lib/libX11-1.8.12.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.8.11.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.8.10.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.8.9.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.8.8.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.8.7.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.8.6.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.8.5.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.8.4.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.8.3.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.8.2.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.8.1.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.8.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.7.5.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.7.4.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.7.3.1.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.7.3.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.7.2.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.7.1.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.7.0.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.6.7.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.6.5.tar.gz", "https://www.x.org/archive/individual/lib/libX11-1.6.3.tar.gz", "https://gitlab.freedesktop.org/xorg/lib/libx11.git" ], "homepages": [ "https://www.x.org/" ], "licenses": [ "X11" ], "maintainers": [ "wdconinc" ], "name": "libx11", "patches": [], "summary": "libX11 - 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This is useful for restricting client access to the display.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXau-1.0.10.tar.gz" ], "version": "1.0.10" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXau-1.0.11.tar.gz" ], "version": "1.0.11" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXau-1.0.12.tar.gz" ], "version": "1.0.12" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXau-1.0.8.tar.gz" ], "version": "1.0.8" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXau-1.0.9.tar.gz" ], "version": "1.0.9" } ] }, "libxaw": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxext", "libxmu", "libxpm", "libxt", "pkgconfig", "util-macros", "xextproto", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXaw-1.0.16.tar.gz", "https://www.x.org/archive/individual/lib/libXaw-1.0.15.tar.gz", "https://www.x.org/archive/individual/lib/libXaw-1.0.14.tar.gz", "https://www.x.org/archive/individual/lib/libXaw-1.0.13.tar.gz", "https://www.x.org/archive/individual/lib/libXaw-1.0.12.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXaw" ], "licenses": [ "MIT" ], "maintainers": [ "wdconinc" ], "name": "libxaw", "patches": [], "summary": "Xaw is the X Athena Widget Set. Xaw is a widget set based on the X\nToolkit Intrinsics (Xt) Library.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXaw-1.0.12.tar.gz" ], "version": "1.0.12" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXaw-1.0.13.tar.gz" ], "version": "1.0.13" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXaw-1.0.14.tar.gz" ], "version": "1.0.14" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXaw-1.0.15.tar.gz" ], "version": "1.0.15" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXaw-1.0.16.tar.gz" ], "version": "1.0.16" } ] }, "libxaw3d": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxext", "libxmu", "libxpm", "libxt", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXaw3d-1.6.6.tar.gz", "https://www.x.org/archive/individual/lib/libXaw3d-1.6.5.tar.gz", "https://www.x.org/archive/individual/lib/libXaw3d-1.6.4.tar.gz", "https://www.x.org/archive/individual/lib/libXaw3d-1.6.2.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXaw3d" ], "licenses": [ "MIT" ], "maintainers": [ "wdconinc" ], "name": "libxaw3d", "patches": [], "summary": "Xaw3d is the X 3D Athena Widget Set. Xaw3d is a widget set based on the\nX Toolkit Intrinsics (Xt) Library.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXaw3d-1.6.2.tar.gz" ], "version": "1.6.2" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXaw3d-1.6.4.tar.gz" ], "version": "1.6.4" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXaw3d-1.6.5.tar.gz" ], "version": "1.6.5" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXaw3d-1.6.6.tar.gz" ], "version": "1.6.6" } ] }, "libxc": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "cmake", "cuda", "fortran", "gmake", "gnuconfig", "libtool", "ninja", "perl" ], "downloads": [ "https://gitlab.com/libxc/libxc/-/archive/7.0.0/libxc-7.0.0.tar.gz", "https://gitlab.com/libxc/libxc/-/archive/6.2.2/libxc-6.2.2.tar.gz", "https://gitlab.com/libxc/libxc/-/archive/6.2.1/libxc-6.2.1.tar.gz", "https://gitlab.com/libxc/libxc/-/archive/6.2.0/libxc-6.2.0.tar.gz", "https://gitlab.com/libxc/libxc/-/archive/6.1.0/libxc-6.1.0.tar.gz", "https://gitlab.com/libxc/libxc/-/archive/6.0.0/libxc-6.0.0.tar.gz", "https://gitlab.com/libxc/libxc/-/archive/5.2.3/libxc-5.2.3.tar.gz", "https://gitlab.com/libxc/libxc/-/archive/5.1.7/libxc-5.1.7.tar.gz", "https://gitlab.com/libxc/libxc/-/archive/5.1.5/libxc-5.1.5.tar.gz", "https://gitlab.com/libxc/libxc/-/archive/5.1.3/libxc-5.1.3.tar.gz", "https://gitlab.com/libxc/libxc/-/archive/5.1.2/libxc-5.1.2.tar.gz", "https://gitlab.com/libxc/libxc/-/archive/5.1.0/libxc-5.1.0.tar.gz", "https://gitlab.com/libxc/libxc/-/archive/5.0.0/libxc-5.0.0.tar.gz", "https://gitlab.com/libxc/libxc/-/archive/4.3.4/libxc-4.3.4.tar.gz", "https://gitlab.com/libxc/libxc/-/archive/4.3.2/libxc-4.3.2.tar.gz", "https://gitlab.com/libxc/libxc/-/archive/4.2.3/libxc-4.2.3.tar.gz", "https://gitlab.com/libxc/libxc/-/archive/3.0.0/libxc-3.0.0.tar.gz", "https://gitlab.com/libxc/libxc/-/archive/2.2.2/libxc-2.2.2.tar.gz", "https://gitlab.com/libxc/libxc/-/archive/2.2.1/libxc-2.2.1.tar.gz" ], "homepages": [ "https://libxc.gitlab.io" ], "licenses": [ "MPL-2.0-no-copyleft-exception" ], "maintainers": [ "RMeli" ], "name": "libxc", "patches": [ "0001-Bugfix-avoid-implicit-pointer-cast-to-make-libxc-com.patch when @5.0.0", "0002-Mark-xc_erfcx-a-GPU_FUNCTION.patch when @5.0.0", "https://raw.githubusercontent.com/cp2k/cp2k/d9e473979eaef93bf16d7abafb9f21845af16eb8/tools/toolchain/scripts/stage3/libxc-6.0.0_mgga_xc_b97mv.patch when @6.0.0" ], "summary": "Libxc is a library of exchange-correlation functionals for density-\nfunctional theory.\n", "version": [ { "downloads": [ "https://gitlab.com/libxc/libxc/-/archive/2.2.1/libxc-2.2.1.tar.gz" ], "version": "2.2.1" }, { "downloads": [ "https://gitlab.com/libxc/libxc/-/archive/2.2.2/libxc-2.2.2.tar.gz" ], "version": "2.2.2" }, { "downloads": [ "https://gitlab.com/libxc/libxc/-/archive/3.0.0/libxc-3.0.0.tar.gz" ], "version": "3.0.0" }, { "downloads": [ 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"https://www.x.org/archive/individual/lib/libXcursor-1.1.14.tar.gz" ], "version": "1.1.14" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXcursor-1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXcursor-1.2.2.tar.gz" ], "version": "1.2.2" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXcursor-1.2.3.tar.gz" ], "version": "1.2.3" } ] }, "libxcvt": { "alias": [], "categories": [], "dependencies": [ "meson", "ninja", "pkgconfig" ], "downloads": [ "https://www.x.org/archive/individual/lib/libxcvt-0.1.2.tar.xz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libxcvt" ], "licenses": [ "MIT" ], "maintainers": [], "name": "libxcvt", "patches": [], "summary": "Implementation of the VESA CVT standard timing modelines generator.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libxcvt-0.1.2.tar.xz" ], "version": "0.1.2" } ] }, "libxdamage": { "alias": [], "categories": [], "dependencies": [ "c", "damageproto", "fixesproto", "gmake", "gnuconfig", "libx11", "libxfixes", "pkgconfig", "util-macros", "xextproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXdamage-1.1.6.tar.gz", "https://www.x.org/archive/individual/lib/libXdamage-1.1.5.tar.gz", "https://www.x.org/archive/individual/lib/libXdamage-1.1.4.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXdamage" ], "licenses": [ "MIT" ], "maintainers": [ "wdconinc" ], "name": "libxdamage", "patches": [], "summary": "This package contains the library for the X Damage extension.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXdamage-1.1.4.tar.gz" ], "version": "1.1.4" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXdamage-1.1.5.tar.gz" ], "version": "1.1.5" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXdamage-1.1.6.tar.gz" ], "version": "1.1.6" } ] }, "libxdmcp": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libbsd", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXdmcp-1.1.5.tar.gz", "https://www.x.org/archive/individual/lib/libXdmcp-1.1.4.tar.gz", "https://www.x.org/archive/individual/lib/libXdmcp-1.1.3.tar.gz", "https://www.x.org/archive/individual/lib/libXdmcp-1.1.2.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXdmcp" ], "licenses": [ "MIT" ], "maintainers": [ "wdconinc" ], "name": "libxdmcp", "patches": [], "summary": "libXdmcp - X Display Manager Control Protocol library.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXdmcp-1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXdmcp-1.1.3.tar.gz" ], "version": "1.1.3" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXdmcp-1.1.4.tar.gz" ], "version": "1.1.4" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXdmcp-1.1.5.tar.gz" ], "version": "1.1.5" } ] }, "libxevie": { "alias": [], "categories": [], "dependencies": [ "c", "evieext", "gmake", "gnuconfig", "libx11", "libxext", "pkgconfig", "util-macros", "xextproto", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXevie-1.0.3.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXevie" ], "licenses": [ "MIT" ], "maintainers": [], "name": "libxevie", "patches": [], "summary": "Xevie - X Event Interception Extension (XEvIE).\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXevie-1.0.3.tar.gz" ], "version": "1.0.3" } ] }, "libxext": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "pkgconfig", "util-macros", "xextproto", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXext-1.3.6.tar.gz", "https://www.x.org/archive/individual/lib/libXext-1.3.5.tar.gz", "https://www.x.org/archive/individual/lib/libXext-1.3.4.tar.gz", "https://www.x.org/archive/individual/lib/libXext-1.3.3.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXext" ], "licenses": [ "MIT" ], "maintainers": [ "wdconinc" ], "name": "libxext", "patches": [], "summary": "libXext - library for common extensions to the X11 protocol.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXext-1.3.3.tar.gz" ], "version": "1.3.3" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXext-1.3.4.tar.gz" ], "version": "1.3.4" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXext-1.3.5.tar.gz" ], "version": "1.3.5" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXext-1.3.6.tar.gz" ], "version": "1.3.6" } ] }, "libxfce4ui": { "alias": [], "categories": [], "dependencies": [ "glib", "gmake", "gnuconfig", "gobject-introspection", "gtkplus", "intltool", "libgtop", "libxfce4util", "startup-notification", "vala", "xfconf" ], "downloads": [ "https://archive.xfce.org/xfce/4.16/src/libxfce4ui-4.18.0.tar.bz2", "https://archive.xfce.org/xfce/4.16/src/libxfce4ui-4.16.0.tar.bz2" ], "homepages": [ "https://docs.xfce.org/xfce/libxfce4ui/start" ], "licenses": [ "LGPLv2" ], "maintainers": [ "teaguesterling" ], "name": "libxfce4ui", "patches": [], "summary": "Widget sharing library for XFCE4\n", "version": [ { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/libxfce4ui-4.16.0.tar.bz2" ], "version": "4.16.0" }, { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/libxfce4ui-4.18.0.tar.bz2" ], "version": "4.18.0" } ] }, "libxfce4util": { "alias": [], "categories": [], "dependencies": [ "gettext", "glib", "gmake", "gnuconfig", "gobject-introspection", "intltool", "pkgconfig", "vala" ], "downloads": [ "https://archive.xfce.org/xfce/4.16/src/libxfce4util-4.18.0.tar.bz2", "https://archive.xfce.org/xfce/4.16/src/libxfce4util-4.16.0.tar.bz2" ], "homepages": [ "https://docs.xfce.org/xfce/libxfce4util/start" ], "licenses": [ "LGPLv2" ], "maintainers": [ "teaguesterling" ], "name": "libxfce4util", "patches": [], "summary": "Libxfce4util common non-GTK+ utilities among the Xfce applications.\n", "version": [ { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/libxfce4util-4.16.0.tar.bz2" ], "version": "4.16.0" }, { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/libxfce4util-4.18.0.tar.bz2" ], "version": "4.18.0" } ] }, "libxfixes": { "alias": [], "categories": [], "dependencies": [ "c", "fixesproto", "gmake", "gnuconfig", "libx11", "pkgconfig", "util-macros", "xextproto", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXfixes-5.0.3.tar.gz", "https://www.x.org/archive/individual/lib/libXfixes-5.0.2.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXfixes" ], "licenses": [ "MIT" ], "maintainers": [ "wdconinc" ], "name": "libxfixes", "patches": [], "summary": "This package contains header files and documentation for the XFIXES\nextension. Library and server implementations are separate.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXfixes-5.0.2.tar.gz" ], "version": "5.0.2" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXfixes-5.0.3.tar.gz" ], "version": "5.0.3" } ] }, "libxfont": { "alias": [], "categories": [], "dependencies": [ "c", "fontsproto", "freetype", "gmake", "gnuconfig", "libfontenc", "pkgconfig", "util-macros", "xproto", "xtrans" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXfont-1.5.4.tar.gz", "https://www.x.org/archive/individual/lib/libXfont-1.5.2.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXfont" ], "licenses": [ "MIT" ], "maintainers": [], "name": "libxfont", "patches": [], "summary": "libXfont provides the core of the legacy X11 font system, handling the\nindex files (fonts.dir, fonts.alias, fonts.scale), the various font file\nformats, and rasterizing them. It is used by the X servers, the X Font\nServer (xfs), and some font utilities (bdftopcf for instance), but\nshould not be used by normal X11 clients. X11 clients access fonts via\neither the new API's in libXft, or the legacy API's in libX11.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXfont-1.5.2.tar.gz" ], "version": "1.5.2" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXfont-1.5.4.tar.gz" ], "version": "1.5.4" } ] }, "libxfont2": { "alias": [], "categories": [], "dependencies": [ "c", "fontsproto", "freetype", "gmake", "gnuconfig", "libfontenc", "pkgconfig", "util-macros", "xproto", "xtrans" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXfont2-2.0.7.tar.gz", "https://www.x.org/archive/individual/lib/libXfont2-2.0.6.tar.gz", "https://www.x.org/archive/individual/lib/libXfont2-2.0.1.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXfont" ], "licenses": [ "MIT" ], "maintainers": [ "wdconinc" ], "name": "libxfont2", "patches": [], "summary": "libXfont provides the core of the legacy X11 font system, handling the\nindex files (fonts.dir, fonts.alias, fonts.scale), the various font file\nformats, and rasterizing them. It is used by the X servers, the X Font\nServer (xfs), and some font utilities (bdftopcf for instance), but\nshould not be used by normal X11 clients. X11 clients access fonts via\neither the new API's in libXft, or the legacy API's in libX11.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXfont2-2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXfont2-2.0.6.tar.gz" ], "version": "2.0.6" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXfont2-2.0.7.tar.gz" ], "version": "2.0.7" } ] }, "libxfontcache": { "alias": [], "categories": [], "dependencies": [ "c", "fontcacheproto", "gmake", "gnuconfig", "libx11", "libxext", "pkgconfig", "util-macros", "xextproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXfontcache-1.0.5.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXfontcache" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "libxfontcache", "patches": [], "summary": "Xfontcache - X-TrueType font cache extension client library.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXfontcache-1.0.5.tar.gz" ], "version": "1.0.5" } ] }, "libxft": { "alias": [], "categories": [], "dependencies": [ "c", "fontconfig", "freetype", "gmake", "gnuconfig", "libx11", "libxrender", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXft-2.3.8.tar.gz", "https://www.x.org/archive/individual/lib/libXft-2.3.7.tar.gz", "https://www.x.org/archive/individual/lib/libXft-2.3.6.tar.gz", "https://www.x.org/archive/individual/lib/libXft-2.3.5.tar.gz", "https://www.x.org/archive/individual/lib/libXft-2.3.4.tar.gz", "https://www.x.org/archive/individual/lib/libXft-2.3.3.tar.gz", "https://www.x.org/archive/individual/lib/libXft-2.3.2.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXft" ], "licenses": [ "MIT" ], "maintainers": [ "wdconinc" ], "name": "libxft", "patches": [], "summary": "X FreeType library. Xft version 2.1 was the first stand alone release of\nXft, a library that connects X applications with the FreeType font\nrasterization library. Xft uses fontconfig to locate fonts so it has no\nconfiguration files.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXft-2.3.2.tar.gz" ], "version": "2.3.2" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXft-2.3.3.tar.gz" ], "version": "2.3.3" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXft-2.3.4.tar.gz" ], "version": "2.3.4" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXft-2.3.5.tar.gz" ], "version": "2.3.5" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXft-2.3.6.tar.gz" ], "version": "2.3.6" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXft-2.3.7.tar.gz" ], "version": "2.3.7" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXft-2.3.8.tar.gz" ], "version": "2.3.8" } ] }, "libxi": { "alias": [], "categories": [], "dependencies": [ "c", "fixesproto", "gmake", "gnuconfig", "inputproto", "libx11", "libxext", "libxfixes", "pkgconfig", "xextproto", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXi-1.7.10.tar.gz", "https://www.x.org/archive/individual/lib/libXi-1.7.9.tar.gz", "https://www.x.org/archive/individual/lib/libXi-1.7.8.tar.gz", "https://www.x.org/archive/individual/lib/libXi-1.7.7.tar.gz", "https://www.x.org/archive/individual/lib/libXi-1.7.6.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXi" ], "licenses": [ "MIT AND X11" ], "maintainers": [ "wdconinc" ], "name": "libxi", "patches": [], "summary": "libXi - library for the X Input Extension.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXi-1.7.10.tar.gz" ], "version": "1.7.10" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXi-1.7.6.tar.gz" ], "version": "1.7.6" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXi-1.7.7.tar.gz" ], "version": "1.7.7" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXi-1.7.8.tar.gz" ], "version": "1.7.8" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXi-1.7.9.tar.gz" ], "version": "1.7.9" } ] }, "libxinerama": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxext", "pkgconfig", "util-macros", "xextproto", "xineramaproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXinerama-1.1.5.tar.gz", "https://www.x.org/archive/individual/lib/libXinerama-1.1.4.tar.gz", "https://www.x.org/archive/individual/lib/libXinerama-1.1.3.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXinerama" ], "licenses": [ "MIT" ], "maintainers": [ "wdconinc" ], "name": "libxinerama", "patches": [], "summary": "libXinerama - API for Xinerama extension to X11 Protocol.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXinerama-1.1.3.tar.gz" ], "version": "1.1.3" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXinerama-1.1.4.tar.gz" ], "version": "1.1.4" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXinerama-1.1.5.tar.gz" ], "version": "1.1.5" } ] }, "libxkbcommon": { "alias": [], "categories": [], "dependencies": [ "bison", "c", "gmake", "gnuconfig", "libxcb", "libxml2", "meson", "ninja", "pkgconfig", "util-macros", "wayland", "wayland-protocols", "xkbdata-api" ], "downloads": [ "https://xkbcommon.org/download/libxkbcommon-1.7.0.tar.xz", "https://xkbcommon.org/download/libxkbcommon-1.6.0.tar.xz", "https://xkbcommon.org/download/libxkbcommon-1.5.0.tar.xz", "https://xkbcommon.org/download/libxkbcommon-1.4.1.tar.xz", "https://xkbcommon.org/download/libxkbcommon-1.4.0.tar.xz" ], "homepages": [ "https://xkbcommon.org/" ], "licenses": [ "MIT" ], "maintainers": [], "name": "libxkbcommon", "patches": [], "summary": "xkbcommon is a library to handle keyboard descriptions, including\nloading them from disk, parsing them and handling their state. It's\nmainly meant for client toolkits, window systems, and other system\napplications.\n", "version": [ { "downloads": [ "https://xkbcommon.org/download/libxkbcommon-1.4.0.tar.xz" ], "version": "1.4.0" }, { "downloads": [ "https://xkbcommon.org/download/libxkbcommon-1.4.1.tar.xz" ], "version": "1.4.1" }, { "downloads": [ "https://xkbcommon.org/download/libxkbcommon-1.5.0.tar.xz" ], "version": "1.5.0" }, { "downloads": [ "https://xkbcommon.org/download/libxkbcommon-1.6.0.tar.xz" ], "version": "1.6.0" }, { "downloads": [ "https://xkbcommon.org/download/libxkbcommon-1.7.0.tar.xz" ], "version": "1.7.0" } ] }, "libxkbfile": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "kbproto", "libx11", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/lib/libxkbfile-1.1.3.tar.gz", "https://www.x.org/archive/individual/lib/libxkbfile-1.1.2.tar.gz", "https://www.x.org/archive/individual/lib/libxkbfile-1.1.1.tar.gz", "https://www.x.org/archive/individual/lib/libxkbfile-1.1.0.tar.gz", "https://www.x.org/archive/individual/lib/libxkbfile-1.0.9.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libxkbfile" ], "licenses": [ "MIT" ], "maintainers": [ "wdconinc" ], "name": "libxkbfile", "patches": [], "summary": "XKB file handling routines.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libxkbfile-1.0.9.tar.gz" ], "version": "1.0.9" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libxkbfile-1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libxkbfile-1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libxkbfile-1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libxkbfile-1.1.3.tar.gz" ], "version": "1.1.3" } ] }, "libxkbui": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxkbfile", "libxt", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/lib/libxkbui-1.0.2.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libxkbui/" ], "licenses": [], "maintainers": [], "name": "libxkbui", "patches": [], "summary": "X.org libxkbui library.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libxkbui-1.0.2.tar.gz" ], "version": "1.0.2" } ] }, "libxml2": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "gmake", "gnuconfig", "iconv", "ninja", "pkgconfig", "python", "python-venv", "xz", "zlib-api" ], "downloads": [ "https://download.gnome.org/sources/libxml2/2.9/libxml2-2.9.13.tar.xz" ], "homepages": [ "https://gitlab.gnome.org/GNOME/libxml2/-/wikis" ], "licenses": [ "MIT" ], "maintainers": [ "AlexanderRichert-NOAA" ], "name": "libxml2", "patches": [], "summary": "Libxml2 is the XML C parser and toolkit developed for the Gnome project\n(but usable outside of the Gnome platform), it is free software\navailable under the MIT License.\n", "version": [ { "downloads": [ "https://download.gnome.org/sources/libxml2/2.11/libxml2-2.11.9.tar.xz" ], "version": "2.11.9" }, { "downloads": [ "https://download.gnome.org/sources/libxml2/2.12/libxml2-2.12.9.tar.xz" ], "version": "2.12.9" }, { "downloads": [ "https://download.gnome.org/sources/libxml2/2.13/libxml2-2.13.4.tar.xz" ], "version": "2.13.4" }, { "downloads": [ "https://download.gnome.org/sources/libxml2/2.13/libxml2-2.13.5.tar.xz" ], "version": "2.13.5" } ] }, "libxmu": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxext", "libxt", "pkgconfig", "util-macros", "xextproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXmu-1.2.1.tar.gz", "https://www.x.org/archive/individual/lib/libXmu-1.2.0.tar.gz", "https://www.x.org/archive/individual/lib/libXmu-1.1.4.tar.gz", "https://www.x.org/archive/individual/lib/libXmu-1.1.2.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXmu" ], "licenses": [ "MIT" ], "maintainers": [ "wdconinc" ], "name": "libxmu", "patches": [], "summary": "This library contains miscellaneous utilities and is not part of the\nXlib standard. It contains routines which only use public interfaces so\nthat it may be layered on top of any proprietary implementation of Xlib\nor Xt.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXmu-1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXmu-1.1.4.tar.gz" ], "version": "1.1.4" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXmu-1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXmu-1.2.1.tar.gz" ], "version": "1.2.1" } ] }, "libxp": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxau", "libxext", "pkgconfig", "printproto", "util-macros", "xextproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXp-1.0.4.tar.gz", "https://www.x.org/archive/individual/lib/libXp-1.0.3.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXp" ], "licenses": [], "maintainers": [ "wdconinc" ], "name": "libxp", "patches": [], "summary": "libXp - X Print Client Library.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXp-1.0.3.tar.gz" ], "version": "1.0.3" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXp-1.0.4.tar.gz" ], "version": "1.0.4" } ] }, "libxpm": { "alias": [], "categories": [], "dependencies": [ "c", "gettext", "gmake", "gnuconfig", "libx11", "ncompress", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXpm-3.5.17.tar.gz", "https://www.x.org/archive/individual/lib/libXpm-3.5.16.tar.gz", "https://www.x.org/archive/individual/lib/libXpm-3.5.15.tar.gz", "https://www.x.org/archive/individual/lib/libXpm-3.5.14.tar.gz", "https://www.x.org/archive/individual/lib/libXpm-3.5.13.tar.gz", "https://www.x.org/archive/individual/lib/libXpm-3.5.12.tar.gz", "https://www.x.org/archive/individual/lib/libXpm-3.5.11.tar.gz", "https://www.x.org/archive/individual/lib/libXpm-3.5.10.tar.gz", "https://www.x.org/archive/individual/lib/libXpm-3.5.9.tar.gz", "https://www.x.org/archive/individual/lib/libXpm-3.5.8.tar.gz", "https://www.x.org/archive/individual/lib/libXpm-3.5.7.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXpm" ], "licenses": [ "X11" ], "maintainers": [ "wdconinc" ], "name": "libxpm", "patches": [], "summary": "libXpm - X Pixmap (XPM) image file format library.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXpm-3.5.10.tar.gz" ], "version": "3.5.10" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXpm-3.5.11.tar.gz" ], "version": "3.5.11" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXpm-3.5.12.tar.gz" ], "version": "3.5.12" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXpm-3.5.13.tar.gz" ], "version": "3.5.13" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXpm-3.5.14.tar.gz" ], "version": "3.5.14" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXpm-3.5.15.tar.gz" ], "version": "3.5.15" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXpm-3.5.16.tar.gz" ], "version": "3.5.16" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXpm-3.5.17.tar.gz" ], "version": "3.5.17" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXpm-3.5.7.tar.gz" ], "version": "3.5.7" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXpm-3.5.8.tar.gz" ], "version": "3.5.8" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXpm-3.5.9.tar.gz" ], "version": "3.5.9" } ] }, "libxpresent": { "alias": [], "categories": [], "dependencies": [ "c", "fixesproto", "gmake", "gnuconfig", "libx11", "libxext", "libxfixes", "libxrandr", "pkgconfig", "presentproto", "randrproto", "util-macros", "xextproto", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXpresent-1.0.1.tar.gz", "https://www.x.org/archive/individual/lib/libXpresent-1.0.0.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXpresent/" ], "licenses": [ "MIT" ], "maintainers": [ "wdconinc" ], "name": "libxpresent", "patches": [], "summary": "This package contains header files and documentation for the Present\nextension. Library and server implementations are separate.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXpresent-1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXpresent-1.0.1.tar.gz" ], "version": "1.0.1" } ] }, "libxprintapputil": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxau", "libxp", "libxprintutil", "pkgconfig", "printproto", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXprintAppUtil-1.0.1.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXprintAppUtil/" ], "licenses": [], "maintainers": [], "name": "libxprintapputil", "patches": [], "summary": "Xprint application utility routines.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXprintAppUtil-1.0.1.tar.gz" ], "version": "1.0.1" } ] }, "libxprintutil": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxau", "libxp", "libxt", "pkgconfig", "printproto", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXprintUtil-1.0.1.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXprintUtil/" ], "licenses": [], "maintainers": [], "name": "libxprintutil", "patches": [], "summary": "Xprint application utility routines.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXprintUtil-1.0.1.tar.gz" ], "version": "1.0.1" } ] }, "libxrandr": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxext", "libxrender", "pkgconfig", "randrproto", "renderproto", "util-macros", "xextproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXrandr-1.5.4.tar.gz", "https://www.x.org/archive/individual/lib/libXrandr-1.5.3.tar.gz", "https://www.x.org/archive/individual/lib/libXrandr-1.5.0.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXrandr" ], "licenses": [ "MIT" ], "maintainers": [ "wdconinc" ], "name": "libxrandr", "patches": [], "summary": "libXrandr - X Resize, Rotate and Reflection extension library.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXrandr-1.5.0.tar.gz" ], "version": "1.5.0" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXrandr-1.5.3.tar.gz" ], "version": "1.5.3" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXrandr-1.5.4.tar.gz" ], "version": "1.5.4" } ] }, "libxrender": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "pkgconfig", "renderproto", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXrender-0.9.12.tar.gz", "https://www.x.org/archive/individual/lib/libXrender-0.9.11.tar.gz", "https://www.x.org/archive/individual/lib/libXrender-0.9.10.tar.gz", "https://www.x.org/archive/individual/lib/libXrender-0.9.9.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXrender" ], "licenses": [ "MIT" ], "maintainers": [ "wdconinc" ], "name": "libxrender", "patches": [], "summary": "libXrender - library for the Render Extension to the X11 protocol.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXrender-0.9.10.tar.gz" ], "version": "0.9.10" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXrender-0.9.11.tar.gz" ], "version": "0.9.11" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXrender-0.9.12.tar.gz" ], "version": "0.9.12" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXrender-0.9.9.tar.gz" ], "version": "0.9.9" } ] }, "libxres": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxext", "pkgconfig", "resourceproto", "util-macros", "xextproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXres-1.2.2.tar.gz", "https://www.x.org/archive/individual/lib/libXres-1.2.1.tar.gz", "https://www.x.org/archive/individual/lib/libXres-1.2.0.tar.gz", "https://www.x.org/archive/individual/lib/libXres-1.0.7.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXRes" ], "licenses": [ "custom" ], "maintainers": [ "wdconinc" ], "name": "libxres", "patches": [], "summary": "libXRes - X-Resource extension client library.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXres-1.0.7.tar.gz" ], "version": "1.0.7" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXres-1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXres-1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXres-1.2.2.tar.gz" ], "version": "1.2.2" } ] }, "libxscrnsaver": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxext", "pkgconfig", "scrnsaverproto", "util-macros", "xextproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXScrnSaver-1.2.4.tar.gz", "https://www.x.org/archive/individual/lib/libXScrnSaver-1.2.3.tar.gz", "https://www.x.org/archive/individual/lib/libXScrnSaver-1.2.2.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXScrnSaver" ], "licenses": [ "MIT" ], "maintainers": [ "wdconinc" ], "name": "libxscrnsaver", "patches": [], "summary": "XScreenSaver - X11 Screen Saver extension client library\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXScrnSaver-1.2.2.tar.gz" ], "version": "1.2.2" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXScrnSaver-1.2.3.tar.gz" ], "version": "1.2.3" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXScrnSaver-1.2.4.tar.gz" ], "version": "1.2.4" } ] }, "libxshmfence": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/libxshmfence-1.3.2.tar.xz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libxshmfence" ], "licenses": [ "MIT" ], "maintainers": [ "wdconinc" ], "name": "libxshmfence", "patches": [], "summary": "libxshmfence - Shared memory 'SyncFence' synchronization primitive. 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{ "downloads": [ "https://github.com/libxsmm/libxsmm/archive/1.16.tar.gz" ], "version": "1.16" }, { "downloads": [ "https://github.com/libxsmm/libxsmm/archive/1.16.1.tar.gz" ], "version": "1.16.1" }, { "downloads": [ "https://github.com/libxsmm/libxsmm/archive/1.16.2.tar.gz" ], "version": "1.16.2" }, { "downloads": [ "https://github.com/libxsmm/libxsmm/archive/1.16.3.tar.gz" ], "version": "1.16.3" }, { "downloads": [ "https://github.com/libxsmm/libxsmm/archive/1.17.tar.gz" ], "version": "1.17" }, { "repositories": [ { "commit": "6f883620f58afdeebab28039fc9cf580e76a5ec6", "type": "git", "url": "https://github.com/libxsmm/libxsmm.git" } ], "version": "1.17-cp2k" }, { "downloads": [ "https://github.com/libxsmm/libxsmm/archive/1.4.tar.gz" ], "version": "1.4" }, { "downloads": [ "https://github.com/libxsmm/libxsmm/archive/1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://github.com/libxsmm/libxsmm/archive/1.4.2.tar.gz" ], "version": "1.4.2" }, { "downloads": [ 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XTrap\nwas a proposed standard extension for X11R5 which facilitated the\ncapturing of server protocol and synthesizing core input events. Digital\nparticipated in the X Consortium's xtest working group which chose to\nevolve XTrap functionality into the XTEST & RECORD extensions for X11R6.\nAs X11R6 was released in 1994, XTrap has now been deprecated for over 15\nyears, and uses of it should be quite rare.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXTrap-1.0.1.tar.gz" ], "version": "1.0.1" } ] }, "libxtst": { "alias": [], "categories": [], "dependencies": [ "c", "fixesproto", "gmake", "gnuconfig", "inputproto", "libx11", "libxext", "libxi", "pkgconfig", "recordproto", "util-macros", "xextproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXtst-1.2.5.tar.gz", "https://www.x.org/archive/individual/lib/libXtst-1.2.4.tar.gz", "https://www.x.org/archive/individual/lib/libXtst-1.2.3.tar.gz", "https://www.x.org/archive/individual/lib/libXtst-1.2.2.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libXtst" ], "licenses": [ "MIT" ], "maintainers": [ "wdconinc" ], "name": "libxtst", "patches": [], "summary": "libXtst provides the Xlib-based client API for the XTEST & RECORD\nextensions. The XTEST extension is a minimal set of client and server\nextensions required to completely test the X11 server with no user\nintervention. This extension is not intended to support general\njournaling and playback of user actions. The RECORD extension supports\nthe recording and reporting of all core X protocol and arbitrary X\nextension protocol.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/libXtst-1.2.2.tar.gz" ], "version": "1.2.2" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXtst-1.2.3.tar.gz" ], "version": "1.2.3" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXtst-1.2.4.tar.gz" ], "version": "1.2.4" }, { "downloads": [ "https://www.x.org/archive/individual/lib/libXtst-1.2.5.tar.gz" ], "version": "1.2.5" } ] }, "libxv": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxext", "pkgconfig", "util-macros", "videoproto", "xextproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/libXv-1.0.13.tar.gz", "https://www.x.org/archive/individual/lib/libXv-1.0.12.tar.gz", "https://www.x.org/archive/individual/lib/libXv-1.0.11.tar.gz", "https://www.x.org/archive/individual/lib/libXv-1.0.10.tar.gz" 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It works for Intel\nand AMD processors on the Linux operating system. This version uses the\nperf_event backend which reduces the feature set but allows user\ninstalls. See https://github.com/RRZE-\nHPC/likwid/wiki/TutorialLikwidPerf#feature-limitations for information.\n", "version": [ { "downloads": [ "https://github.com/RRZE-HPC/likwid/archive/v4.3.0.tar.gz" ], "version": "4.3.0" }, { "downloads": [ "https://github.com/RRZE-HPC/likwid/archive/v4.3.1.tar.gz" ], "version": "4.3.1" }, { "downloads": [ "https://github.com/RRZE-HPC/likwid/archive/v4.3.2.tar.gz" ], "version": "4.3.2" }, { "downloads": [ "https://github.com/RRZE-HPC/likwid/archive/v4.3.3.tar.gz" ], "version": "4.3.3" }, { "downloads": [ "https://github.com/RRZE-HPC/likwid/archive/v4.3.4.tar.gz" ], "version": "4.3.4" }, { "downloads": [ "https://github.com/RRZE-HPC/likwid/archive/v5.0.0.tar.gz" ], "version": "5.0.0" }, { "downloads": [ "https://github.com/RRZE-HPC/likwid/archive/v5.0.1.tar.gz" ], "version": "5.0.1" }, { "downloads": [ "https://github.com/RRZE-HPC/likwid/archive/v5.0.2.tar.gz" ], "version": "5.0.2" }, { "downloads": [ 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See\nhttp://sources.redhat.com/dm/ for additional information about the\ndevice-mapper kernel and userspace components.\n", "version": [ { "downloads": [ "https://sourceware.org/pub/lvm2/releases/LVM2.2.03.00.tgz" ], "version": "2.03.00" }, { "downloads": [ "https://sourceware.org/pub/lvm2/releases/LVM2.2.03.01.tgz" ], "version": "2.03.01" }, { "downloads": [ "https://sourceware.org/pub/lvm2/releases/LVM2.2.03.02.tgz" ], "version": "2.03.02" }, { "downloads": [ "https://sourceware.org/pub/lvm2/releases/LVM2.2.03.03.tgz" ], "version": "2.03.03" }, { "downloads": [ "https://sourceware.org/pub/lvm2/releases/LVM2.2.03.04.tgz" ], "version": "2.03.04" }, { "downloads": [ "https://sourceware.org/pub/lvm2/releases/LVM2.2.03.05.tgz" ], "version": "2.03.05" }, { "downloads": [ "https://sourceware.org/pub/lvm2/releases/LVM2.2.03.14.tgz" ], "version": "2.03.14" } ] }, "lwgrp": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "mpi" ], "downloads": [ "https://github.com/LLNL/lwgrp/releases/download/vmain/lwgrp-main.tar.gz", "https://github.com/LLNL/lwgrp/releases/download/v1.0.6/lwgrp-1.0.6.tar.gz", "https://github.com/LLNL/lwgrp/releases/download/v1.0.5/lwgrp-1.0.5.tar.gz", "https://github.com/LLNL/lwgrp/releases/download/v1.0.4/lwgrp-1.0.4.tar.gz", "https://github.com/LLNL/lwgrp/releases/download/v1.0.3/lwgrp-1.0.3.tar.gz", "https://github.com/LLNL/lwgrp/releases/download/v1.0.2/lwgrp-1.0.2.tar.gz", "https://github.com/LLNL/lwgrp.git" ], "homepages": [ "https://github.com/LLNL/lwgrp" ], "licenses": [], "maintainers": [ "CamStan", "adammoody", "gonsie" ], "name": "lwgrp", "patches": [], "summary": "Thie light-weight group library provides process group representations\nusing O(log N) space and time.\n", "version": [ { "downloads": [ "https://github.com/LLNL/lwgrp/releases/download/v1.0.2/lwgrp-1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://github.com/LLNL/lwgrp/releases/download/v1.0.3/lwgrp-1.0.3.tar.gz" ], "version": "1.0.3" }, { "downloads": [ "https://github.com/LLNL/lwgrp/releases/download/v1.0.4/lwgrp-1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://github.com/LLNL/lwgrp/releases/download/v1.0.5/lwgrp-1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://github.com/LLNL/lwgrp/releases/download/v1.0.6/lwgrp-1.0.6.tar.gz" ], "version": "1.0.6" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/LLNL/lwgrp.git" } ], "version": "main" } ] }, "lwm2": { "alias": [], "categories": [], "dependencies": [ "gmake", "gnuconfig", "mpi", "papi" ], "downloads": [], "homepages": [ "https://jay.grs.rwth-aachen.de/redmine/projects/lwm2" ], "licenses": [], "maintainers": [], "name": "lwm2", "patches": [], "summary": "LWM2: Light Weight Measurement Module. This is a PMPI module that can\ncollect a number of time-sliced MPI and POSIX I/O measurements from a\nprogram.\n", "version": [ { "downloads": [ [] ], "version": "torus" } ] }, "lwtnn": { "alias": [], "categories": [], "dependencies": [ "boost", "cmake", "cxx", "eigen", "gmake", "ninja" ], "downloads": [ "https://github.com/lwtnn/lwtnn/archive/refs/tags/v2.13.tar.gz", "https://github.com/lwtnn/lwtnn/archive/refs/tags/v2.12.1.tar.gz", "https://github.com/lwtnn/lwtnn/archive/refs/tags/v2.10.tar.gz" ], "homepages": [ "https://github.com/lwtnn/lwtnn" ], "licenses": [ "MIT" ], "maintainers": [ "haralmha" ], "name": "lwtnn", "patches": [], "summary": "Lightweight Trained Neural Network.\n", "version": [ { "downloads": [ "https://github.com/lwtnn/lwtnn/archive/refs/tags/v2.10.tar.gz" ], "version": "2.10" }, { "downloads": [ "https://github.com/lwtnn/lwtnn/archive/refs/tags/v2.12.1.tar.gz" ], "version": "2.12.1" }, { "downloads": [ "https://github.com/lwtnn/lwtnn/archive/refs/tags/v2.13.tar.gz" ], "version": "2.13" } ] }, "lxc": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://github.com/lxc/lxc/archive/lxc-4.0.2.tar.gz", "https://github.com/lxc/lxc/archive/lxc-4.0.1.tar.gz", "https://github.com/lxc/lxc/archive/lxc-4.0.0.tar.gz", "https://github.com/lxc/lxc/archive/lxc-3.2.1.tar.gz", "https://github.com/lxc/lxc/archive/lxc-3.2.0.tar.gz", "https://github.com/lxc/lxc/archive/lxc-3.1.0.tar.gz", "https://github.com/lxc/lxc/archive/lxc-3.0.4.tar.gz", "https://github.com/lxc/lxc/archive/lxc-3.0.3.tar.gz", "https://github.com/lxc/lxc/archive/lxc-2.0.11.tar.gz", "https://github.com/lxc/lxc/archive/lxc-2.0.10.tar.gz" ], "homepages": [ "https://linuxcontainers.org/lxc/" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "lxc", "patches": [], "summary": "LXC is the well-known and heavily tested low-level Linux container\nruntime. It is in active development since 2008 and has proven itself in\ncritical production environments world-wide. Some of its core\ncontributors are the same people that helped to implement various well-\nknown containerization features inside the Linux kernel.\n", "version": [ { "downloads": [ "https://github.com/lxc/lxc/archive/lxc-2.0.10.tar.gz" ], "version": "2.0.10" }, { "downloads": [ "https://github.com/lxc/lxc/archive/lxc-2.0.11.tar.gz" ], "version": "2.0.11" }, { "downloads": [ "https://github.com/lxc/lxc/archive/lxc-3.0.3.tar.gz" ], "version": "3.0.3" }, { "downloads": [ "https://github.com/lxc/lxc/archive/lxc-3.0.4.tar.gz" ], "version": "3.0.4" }, { "downloads": [ "https://github.com/lxc/lxc/archive/lxc-3.1.0.tar.gz" ], "version": "3.1.0" }, { "downloads": [ "https://github.com/lxc/lxc/archive/lxc-3.2.0.tar.gz" ], "version": "3.2.0" }, { "downloads": [ "https://github.com/lxc/lxc/archive/lxc-3.2.1.tar.gz" ], "version": "3.2.1" }, { "downloads": [ "https://github.com/lxc/lxc/archive/lxc-4.0.0.tar.gz" ], "version": "4.0.0" }, { "downloads": [ "https://github.com/lxc/lxc/archive/lxc-4.0.1.tar.gz" ], "version": "4.0.1" }, { "downloads": [ "https://github.com/lxc/lxc/archive/lxc-4.0.2.tar.gz" ], "version": "4.0.2" } ] }, "lynx": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "ncurses" ], "downloads": [ "https://invisible-mirror.net/archives/lynx/tarballs/lynx2.8.9rel.1.tar.gz" ], "homepages": [ "https://lynx.invisible-island.net/" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "lynx", "patches": [], "summary": "Lynx is the text web browser.\n", "version": [ { "downloads": [ "https://invisible-mirror.net/archives/lynx/tarballs/lynx2.8.9rel.1.tar.gz" ], "version": "2.8.9.1" } ] }, "lz4": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja", "valgrind" ], "downloads": [ "https://github.com/lz4/lz4/archive/v1.9.2.tar.gz" ], "homepages": [ "https://lz4.github.io/lz4/" ], "licenses": [ "BSD-2-Clause AND GPL-2.0-only" ], "maintainers": [ "AlexanderRichert-NOAA" ], "name": "lz4", "patches": [], "summary": "LZ4 is lossless compression algorithm, providing compression speed at\n400 MB/s per core, scalable with multi-cores CPU. It also features an\nextremely fast decoder, with speed in multiple GB/s per core, typically\nreaching RAM speed limits on multi-core systems.\n", "version": [ { "downloads": [ "https://github.com/lz4/lz4/archive/v1.10.0.tar.gz" ], "version": "1.10.0" }, { "downloads": [ "https://github.com/lz4/lz4/archive/r131.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://github.com/lz4/lz4/archive/v1.7.5.tar.gz" ], "version": "1.7.5" }, { "downloads": [ "https://github.com/lz4/lz4/archive/v1.8.1.2.tar.gz" ], "version": "1.8.1.2" }, { "downloads": [ "https://github.com/lz4/lz4/archive/v1.8.3.tar.gz" ], "version": "1.8.3" }, { "downloads": [ "https://github.com/lz4/lz4/archive/v1.9.0.tar.gz" ], "version": "1.9.0" }, { "downloads": [ "https://github.com/lz4/lz4/archive/v1.9.2.tar.gz" ], "version": "1.9.2" }, { "downloads": [ "https://github.com/lz4/lz4/archive/v1.9.3.tar.gz" ], "version": "1.9.3" }, { "downloads": [ "https://github.com/lz4/lz4/archive/v1.9.4.tar.gz" ], "version": "1.9.4" } ] }, "lzma": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gnuconfig" ], "downloads": [ "https://tukaani.org/lzma/lzma-4.32.7.tar.gz" ], "homepages": [ "https://tukaani.org/lzma/" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "lzma", "patches": [], "summary": "LZMA Utils are legacy data compression software with high compression\nratio. LZMA Utils are no longer developed, although critical bugs may be\nfixed as long as fixing them doesn't require huge changes to the code.\nUsers of LZMA Utils should move to XZ Utils. XZ Utils support the legacy\n.lzma format used by LZMA Utils, and can also emulate the command line\ntools of LZMA Utils. This should make transition from LZMA Utils to XZ\nUtils relatively easy.\n", "version": [ { "downloads": [ "https://tukaani.org/lzma/lzma-4.32.7.tar.gz" ], "version": "4.32.7" } ] }, "lzo": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://www.oberhumer.com/opensource/lzo/download/lzo-2.10.tar.gz", "https://www.oberhumer.com/opensource/lzo/download/lzo-2.09.tar.gz", "https://www.oberhumer.com/opensource/lzo/download/lzo-2.08.tar.gz", "https://www.oberhumer.com/opensource/lzo/download/lzo-2.07.tar.gz", "https://www.oberhumer.com/opensource/lzo/download/lzo-2.06.tar.gz", "https://www.oberhumer.com/opensource/lzo/download/lzo-2.05.tar.gz" ], "homepages": [ "https://www.oberhumer.com/opensource/lzo/" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "lzo", "patches": [], "summary": "Real-time data compression library\n", "version": [ { "downloads": [ "https://www.oberhumer.com/opensource/lzo/download/lzo-2.05.tar.gz" ], 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For instructions on how to set up a mirror, see\nhttps://spack.readthedocs.io/en/latest/mirrors.html\n", "version": [ { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/maker-2.31.10.tgz" ], "version": "2.31.10" }, { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/maker-3.01.03.tgz" ], "version": "3.01.03" }, { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/maker-3.01.04.tgz" ], "version": "3.01.04" } ] }, "mallocmc": { "alias": [], "categories": [], "dependencies": [ "boost", "cmake", "cuda", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/ComputationalRadiationPhysics/mallocMC/archive/develop.tar.gz", "https://github.com/ComputationalRadiationPhysics/mallocMC/archive/master.tar.gz", "https://github.com/ComputationalRadiationPhysics/mallocMC/archive/2.2.0crp.tar.gz", "https://github.com/ComputationalRadiationPhysics/mallocMC/archive/2.1.0crp.tar.gz", "https://github.com/ComputationalRadiationPhysics/mallocMC/archive/2.0.1crp.tar.gz", "https://github.com/ComputationalRadiationPhysics/mallocMC/archive/2.0.0crp.tar.gz", "https://github.com/ComputationalRadiationPhysics/mallocMC/archive/1.0.2crp.tar.gz", "https://github.com/ComputationalRadiationPhysics/mallocMC.git" ], "homepages": [ "https://github.com/ComputationalRadiationPhysics/mallocMC" ], "licenses": [ "MIT" ], "maintainers": [ "ax3l" ], "name": "mallocmc", "patches": [], "summary": "mallocMC: Memory Allocator for Many Core Architectures. This project\nprovides a framework for fast memory managers on many core accelerators.\nCurrently, it supports NVIDIA GPUs of compute capability sm_20 or higher\nthrough the ScatterAlloc algorithm. mallocMC is header-only, but\nrequires a few other C++ libraries to be available.\n", "version": [ { "downloads": [ "https://github.com/ComputationalRadiationPhysics/mallocMC/archive/1.0.2crp.tar.gz" ], "version": "1.0.2crp" }, { "downloads": [ "https://github.com/ComputationalRadiationPhysics/mallocMC/archive/2.0.0crp.tar.gz" ], "version": "2.0.0crp" }, { "downloads": [ "https://github.com/ComputationalRadiationPhysics/mallocMC/archive/2.0.1crp.tar.gz" ], "version": "2.0.1crp" }, { "downloads": [ "https://github.com/ComputationalRadiationPhysics/mallocMC/archive/2.1.0crp.tar.gz" ], "version": "2.1.0crp" }, { "downloads": [ "https://github.com/ComputationalRadiationPhysics/mallocMC/archive/2.2.0crp.tar.gz" ], "version": "2.2.0crp" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/ComputationalRadiationPhysics/mallocMC.git" } ], "version": "develop" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/ComputationalRadiationPhysics/mallocMC.git" } ], "version": "master" } ] }, "maloc": { "alias": [], "categories": [], "dependencies": [ "c", "doxygen", "fortran", "gmake", "gnuconfig", "graphviz" ], "downloads": [ "http://www.fetk.org/codes/download/maloc-1.5.tar.gz", "http://www.fetk.org/codes/download/maloc-1.4.tar.gz", "http://www.fetk.org/codes/download/maloc-1.3.tar.gz", "http://www.fetk.org/codes/download/maloc-1.2.tar.gz", "http://www.fetk.org/codes/download/maloc-1.1.tar.gz", "http://www.fetk.org/codes/download/maloc-1.0.tar.gz" ], "homepages": [ "http://fetk.org/codes/maloc/" ], "licenses": [], "maintainers": [], "name": "maloc", "patches": [], "summary": "MALOC (Minimal Abstraction Layer for Object-oriented C) is a small,\nportable, abstract C environment library for object-oriented C\nprogramming. 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It is an enhanced, drop-\nin replacement for MySQL. MariaDB is used because it is fast, scalable\nand robust, with a rich ecosystem of storage engines, plugins and many\nother tools make it very versatile for a wide variety of use cases. This\npackage comprises only the standalone 'C Connector', which enables\nconnections to MariaDB and MySQL servers.\n", "version": [ { "downloads": [ "https://downloads.mariadb.com/Connectors/c/connector-c-2.1.0/mariadb-connector-c-2.1.0-src.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://downloads.mariadb.com/Connectors/c/connector-c-2.2.0/mariadb-connector-c-2.2.0-src.tar.gz" ], "version": "2.2.0" }, { "downloads": [ "https://downloads.mariadb.com/Connectors/c/connector-c-2.2.1/mariadb-connector-c-2.2.1-src.tar.gz" ], "version": "2.2.1" }, { "downloads": [ "https://downloads.mariadb.com/Connectors/c/connector-c-2.2.2/mariadb-connector-c-2.2.2-src.tar.gz" ], "version": "2.2.2" }, { "downloads": [ "https://downloads.mariadb.com/Connectors/c/connector-c-2.2.3/mariadb-connector-c-2.2.3-src.tar.gz" ], "version": "2.2.3" }, { "downloads": [ "https://downloads.mariadb.com/Connectors/c/connector-c-2.3.0/mariadb-connector-c-2.3.0-src.tar.gz" ], "version": "2.3.0" }, { "downloads": 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"https://github.com/mariadb-corporation/mariadb-connector-c/commit/b10b76e5a2b983d86bd487873608abce8e0d507b.patch?full_index=1 when @3: %gcc@15:" ], "summary": "MariaDB turns data into structured information in a wide array of\napplications, ranging from banking to websites. It is an enhanced, drop-\nin replacement for MySQL. MariaDB is used because it is fast, scalable\nand robust, with a rich ecosystem of storage engines, plugins and many\nother tools make it very versatile for a wide variety of use cases. This\npackage comprises only the standalone 'C Connector', which enables\nconnections to MariaDB and MySQL servers.\n", "version": [ { "downloads": [ "https://downloads.mariadb.com/Connectors/c/connector-c-2.1.0/mariadb-connector-c-2.1.0-src.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://downloads.mariadb.com/Connectors/c/connector-c-2.2.0/mariadb-connector-c-2.2.0-src.tar.gz" ], "version": "2.2.0" }, { "downloads": [ "https://downloads.mariadb.com/Connectors/c/connector-c-2.2.1/mariadb-connector-c-2.2.1-src.tar.gz" ], "version": "2.2.1" }, { "downloads": [ "https://downloads.mariadb.com/Connectors/c/connector-c-2.2.2/mariadb-connector-c-2.2.2-src.tar.gz" ], "version": "2.2.2" }, { "downloads": [ "https://downloads.mariadb.com/Connectors/c/connector-c-2.2.3/mariadb-connector-c-2.2.3-src.tar.gz" ], "version": "2.2.3" }, { "downloads": [ "https://downloads.mariadb.com/Connectors/c/connector-c-2.3.0/mariadb-connector-c-2.3.0-src.tar.gz" ], "version": "2.3.0" }, { "downloads": 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"dependencies": [ "cgm", "cxx", "gmake", "gnuconfig", "moab", "mpi", "netgen" ], "downloads": [ "https://ftp.mcs.anl.gov/pub/fathom/meshkit-1.5.0.tar.gz" ], "homepages": [ "https://sigma.mcs.anl.gov/meshkit-library" ], "licenses": [], "maintainers": [], "name": "meshkit", "patches": [], "summary": "MeshKit is an open-source library of mesh generation functionality. Its\ndesign philosophy is two-fold: it provides a collection of meshing\nalgorithms for use in real meshing problems, along with other tools\ncommonly needed to support mesh generation\n", "version": [ { "downloads": [ "https://ftp.mcs.anl.gov/pub/fathom/meshkit-1.5.0.tar.gz" ], "version": "1.5.0" } ] }, "meshlab": { "alias": [], "categories": [], "dependencies": [ "cmake", "eigen", "glew", "gmake", "mpfr", "ninja", "qt" ], "downloads": [ "https://github.com/cnr-isti-vclab/meshlab/archive/refs/tags/MeshLab-main.tar.gz", "https://github.com/cnr-isti-vclab/meshlab/archive/refs/tags/MeshLab-2025.07.tar.gz", "https://github.com/cnr-isti-vclab/meshlab/archive/refs/tags/MeshLab-2023.12.tar.gz", "https://github.com/cnr-isti-vclab/meshlab.git" ], "homepages": [ "https://www.meshlab.net" ], "licenses": [ "GPL-3.0" ], "maintainers": [ "wdconinc" ], "name": "meshlab", "patches": [], "summary": "The open source mesh processing system.\n", "version": [ { "repositories": [ { "commit": "2dbd2f4b12df3b47d8777b2b4a43cabd9e425735", "type": "git", "url": "https://github.com/cnr-isti-vclab/meshlab.git" } ], "version": "2023.12" }, { "repositories": [ { "commit": "dc48b91ae562756a6988048c5d5c7f1d2b687256", "type": "git", "url": "https://github.com/cnr-isti-vclab/meshlab.git" } ], "version": "2025.07" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/cnr-isti-vclab/meshlab.git" } ], "version": "main" } ] }, "meshtool": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake" ], "downloads": [ "https://bitbucket.org/aneic/meshtool.git" ], "homepages": [ "https://bitbucket.org/aneic/meshtool/" ], "licenses": [], "maintainers": [ "MarieHouillon" ], "name": "meshtool", "patches": [], "summary": "Meshtool - 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Mesquite provides a robust and effective mesh\nimprovement toolkit that allows both meshing researchers application\nscientists to benefit from the latest developments in mesh quality\ncontrol and improvement.\n", "version": [ { "downloads": [ "https://software.sandia.gov/mesquite/mesquite-2.2.0.tar.gz" ], "version": "2.2.0" }, { "downloads": [ "https://software.sandia.gov/mesquite/mesquite-2.3.0.tar.gz" ], "version": "2.3.0" }, { "downloads": [ "https://software.sandia.gov/mesquite/mesquite-2.99.tar.gz" ], "version": "2.99" } ] }, "met": { "alias": [], "categories": [], "dependencies": [ "bufr", "cairo", "cxx", "fortran", "freetype", "g2c", "gmake", "gnuconfig", "gsl", "hdf", "hdf-eos2", "netcdf-c", "netcdf-cxx4", "proj", "py-netcdf4", "py-numpy", "py-pandas", "py-xarray", "python", "zlib-api" ], "downloads": [ "https://github.com/dtcenter/MET/archive/refs/tags/v11.0.1.tar.gz", "https://github.com/dtcenter/MET" ], "homepages": [ "https://dtcenter.org/community-code/model-evaluation-tools-met" ], "licenses": [], "maintainers": [ "AlexanderRichert-NOAA", "climbfuji" ], "name": "met", "patches": [ "openmp_shape_patch.patch when @10.1.0", "apple-clang-string-cast-operator.patch when @10.1.1:11.0 %apple-clang@14:", "apple-clang-no-register.patch when @10.1.1:11.0 %apple-clang@14:" ], "summary": "Statistical tool that matches up grids with either gridded analyses or\npoint observations and applies configurable methods to compute\nstatistics and diagnostics\n", "version": [ { "downloads": [ "https://github.com/dtcenter/MET/releases/download/v10.0.0/met-10.0.0.20210510.tar.gz" ], "version": "10.0.0" }, { "downloads": [ "https://github.com/dtcenter/MET/releases/download/v10.0.1/met-10.0.1.20211201.tar.gz" ], "version": "10.0.1" }, { "downloads": [ "https://github.com/dtcenter/MET/releases/download/v10.1.0/met-10.1.0.20220314.tar.gz" ], "version": "10.1.0" }, { "downloads": [ "https://github.com/dtcenter/MET/releases/download/v10.1.1/met-10.1.1.20220419.tar.gz" ], "version": "10.1.1" }, { "downloads": [ "https://github.com/dtcenter/MET/archive/refs/tags/v11.0.0.tar.gz" ], "version": "11.0.0" }, { "downloads": [ "https://github.com/dtcenter/MET/archive/refs/tags/v11.0.1.tar.gz" ], "version": "11.0.1" }, { "downloads": [ "https://github.com/dtcenter/MET/archive/refs/tags/v11.0.2.tar.gz" ], "version": "11.0.2" }, { "downloads": [ "https://github.com/dtcenter/MET/archive/refs/tags/v11.1.0.tar.gz" ], "version": "11.1.0" }, { "downloads": [ "https://github.com/dtcenter/MET/archive/refs/tags/v11.1.1.tar.gz" ], "version": "11.1.1" }, { "downloads": [ "https://github.com/dtcenter/MET/archive/refs/tags/v12.0.0.tar.gz" ], "version": "12.0.0" }, { "downloads": [ "https://github.com/dtcenter/MET/archive/refs/tags/v12.0.1.tar.gz" ], "version": "12.0.1" }, { "downloads": [ "https://github.com/dtcenter/MET/archive/refs/tags/v12.1.1.tar.gz" ], "version": "12.1.1" }, { "downloads": [ "https://github.com/dtcenter/MET/releases/download/v9.1.3/met-9.1.3.20210319.tar.gz" ], "version": "9.1.3" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/dtcenter/MET" } ], "version": "develop" } ] }, "metabat": { "alias": [], "categories": [], "dependencies": [ "autoconf", "boost", "cmake", "cxx", "gmake", "ncurses", "ninja", "perl", "zlib-api" ], "downloads": [ "https://bitbucket.org/berkeleylab/metabat/get/v2.15.tar.gz", "https://bitbucket.org/berkeleylab/metabat/get/v2.14.tar.gz", "https://bitbucket.org/berkeleylab/metabat/get/v2.13.tar.gz" ], "homepages": [ "https://bitbucket.org/berkeleylab/metabat" ], "licenses": [ "BSD-3-Clause-LBNL" ], "maintainers": [], "name": "metabat", "patches": [], "summary": "MetaBAT, an efficient tool for accurately reconstructing single genomes\nfrom complex microbial communities.\n", "version": [ { "downloads": [ "https://bitbucket.org/berkeleylab/metabat/get/v2.13.tar.gz" ], "version": "2.13" }, { "downloads": [ "https://bitbucket.org/berkeleylab/metabat/get/v2.14.tar.gz" ], "version": "2.14" }, { "downloads": [ "https://bitbucket.org/berkeleylab/metabat/get/v2.15.tar.gz" ], "version": "2.15" } ] }, "metacarpa": { "alias": [], "categories": [], "dependencies": [ "boost", "cmake", "cxx", "gmake" ], "downloads": [ "https://github.com/hmgu-itg/metacarpa/archive/refs/tags/1.0.1.tar.gz" ], "homepages": [ "https://www.sanger.ac.uk/tool/metacarpa/" ], "licenses": [], "maintainers": [], "name": "metacarpa", "patches": [], "summary": " METACARPA is designed for meta-analysing genetic association studies\nwith overlapping or related samples, when details of the overlap or\nrelatedness are unknown. It implements and expands a method first\ndescribed by Province and Borecki.\n", "version": [ { "downloads": [ "https://github.com/hmgu-itg/metacarpa/archive/refs/tags/1.0.1.tar.gz" ], "version": "1.0.1" } ] }, "metaeuk": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/soedinglab/metaeuk/archive/refs/tags/6-a5d39d9.tar.gz" ], "homepages": [ "https://metaeuk.soedinglab.org/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [ "snehring" ], "name": "metaeuk", "patches": [], "summary": "MetaEuk is a modular toolkit designed for large-scale gene discovery and\nannotation in eukaryotic metagenomic contigs.\n", "version": [ { "downloads": [ "https://github.com/soedinglab/metaeuk/archive/refs/tags/6-a5d39d9.tar.gz" ], "version": "6-a5d39d9" } ] }, "metal": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "gmake", "ninja", "zlib-ng" ], "downloads": [ 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metrics) will\nprocess a coordinate-sorted and indexed BAM or CRAM file containing some\nform of BS-seq alignments and extract per-base methylation metrics from\nthem.\n", "version": [ { "downloads": [ "https://github.com/dpryan79/MethylDackel/archive/refs/tags/0.6.1.tar.gz" ], "version": "0.6.1" } ] }, "metis": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz", "http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-4.0.3.tar.gz" ], "homepages": [ "http://glaros.dtc.umn.edu/gkhome/metis/metis/overview" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "mthcrts" ], "name": "metis", "patches": [ "no_warning.patch when @5:+no_warning", "gklib_path.patch when build_system=cmake", "install_gklib_defs_rename.patch when build_system=cmake", "gklib_nomisleadingindentation_warning.patch when build_system=cmake %gcc@6:" ], "summary": "METIS is a set of serial programs for partitioning graphs, partitioning\nfinite element meshes, and producing fill reducing orderings for sparse\nmatrices. The algorithms implemented in METIS are based on the\nmultilevel recursive-bisection, multilevel k-way, and multi-constraint\npartitioning schemes.\n", "version": [ { "downloads": [ "http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-4.0.3.tar.gz" ], "version": "4.0.3" }, { "downloads": [ "http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz" ], "version": "5.1.0" } ] }, "metkit": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "ecbuild", "eccodes", "eckit", "gmake", "ninja", "odc" ], "downloads": [ "https://github.com/ecmwf/metkit/archive/refs/tags/1.11.5.tar.gz", "https://github.com/ecmwf/metkit/archive/refs/tags/1.10.17.tar.gz", "https://github.com/ecmwf/metkit/archive/refs/tags/1.10.2.tar.gz", "https://github.com/ecmwf/metkit/archive/refs/tags/1.9.2.tar.gz", "https://github.com/ecmwf/metkit/archive/refs/tags/1.7.0.tar.gz", "https://github.com/ecmwf/metkit.git" ], "homepages": [ "https://github.com/ecmwf/metkit" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "skosukhin", "victoria-cherkas" ], "name": "metkit", "patches": [], "summary": "Toolkit for manipulating and describing meteorological objects,\nimplementing the MARS language and associated processing and semantics.\n", "version": [ { "downloads": [ "https://github.com/ecmwf/metkit/archive/refs/tags/1.10.17.tar.gz" ], "version": "1.10.17" }, { "downloads": [ "https://github.com/ecmwf/metkit/archive/refs/tags/1.10.2.tar.gz" ], "version": "1.10.2" }, { "downloads": [ "https://github.com/ecmwf/metkit/archive/refs/tags/1.11.5.tar.gz" ], "version": "1.11.5" }, { "downloads": [ "https://github.com/ecmwf/metkit/archive/refs/tags/1.7.0.tar.gz" ], "version": "1.7.0" }, { "downloads": [ "https://github.com/ecmwf/metkit/archive/refs/tags/1.9.2.tar.gz" ], "version": "1.9.2" } ] }, "metplus": { "alias": [], "categories": [], "dependencies": [ "imagemagick", "met", "netcdf-c", "py-cartopy", "py-matplotlib", "py-python-dateutil", "python", "r" ], "downloads": [ 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"summary": " METplus is a verification framework that spans a wide range of temporal\n(warn-on-forecast to climate) and spatial (storm to global) scales.\n", "version": [ { "downloads": [ "https://github.com/dtcenter/METplus/archive/refs/tags/v3.1.1.tar.gz" ], "version": "3.1.1" }, { "downloads": [ "https://github.com/dtcenter/METplus/archive/refs/tags/v4.0.0.tar.gz" ], "version": "4.0.0" }, { "downloads": [ "https://github.com/dtcenter/METplus/archive/refs/tags/v4.1.0.tar.gz" ], "version": "4.1.0" }, { "downloads": [ "https://github.com/dtcenter/METplus/archive/refs/tags/v4.1.1.tar.gz" ], "version": "4.1.1" }, { "downloads": [ "https://github.com/dtcenter/METplus/archive/refs/tags/v4.1.4.tar.gz" ], "version": "4.1.4" }, { "downloads": [ "https://github.com/dtcenter/METplus/archive/refs/tags/v5.0.0.tar.gz" ], "version": "5.0.0" }, { "downloads": [ "https://github.com/dtcenter/METplus/archive/refs/tags/v5.0.1.tar.gz" ], "version": "5.0.1" }, { "downloads": [ 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"repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/mfem/mfem.git" } ], "version": "develop" } ] }, "mg": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "ncurses" ], "downloads": [ "https://github.com/ibara/mg/archive/mg-6.6.tar.gz" ], "homepages": [ "https://github.com/ibara/mg" ], "licenses": [], "maintainers": [], "name": "mg", "patches": [], "summary": "Mg is intended to be a small, fast, and portable editor for people who\ncan't (or don't want to) run emacs for one reason or another, or are not\nfamiliar with the vi editor. It is compatible with emacs because there\nshouldn't be any reason to learn more editor types than emacs or vi.\n", "version": [ { "downloads": [ "https://github.com/ibara/mg/archive/mg-6.6.tar.gz" ], "version": "6.6" } ] }, "mgard": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "c", "cmake", "cuda", "cxx", "gmake", "hip", "hipcub", "hsa-rocr-dev", "libarchive", "llvm-amdgpu", "llvm-openmp", "ninja", "nvcomp", "pkgconfig", "protobuf", "python", "sed", "tclap", "yaml-cpp", "zlib", "zlib-api", "zstd" ], "downloads": [ "https://github.com/CODARcode/MGARD/archive/refs/tags/1.5.2.tar.gz", "https://github.com/CODARcode/MGARD/archive/refs/tags/compat-2023-12-09.tar.gz", "https://github.com/CODARcode/MGARD/archive/refs/tags/compat-2023-03-31.tar.gz", "https://github.com/CODARcode/MGARD/archive/refs/tags/compat-2023-01-10.tar.gz", "https://github.com/CODARcode/MGARD/archive/refs/tags/compat-2022-11-18.tar.gz", "https://github.com/CODARcode/MGARD/archive/refs/tags/compat-2021-11-12.tar.gz", "https://github.com/CODARcode/MGARD/archive/refs/tags/compat-2020-10-01.tar.gz", "https://github.com/CODARcode/MGARD.git" ], "homepages": [ "https://github.com/CODARcode/MGARD" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "kmorel", "robertu94", "vicentebolea" ], "name": "mgard", "patches": [ "hip-pointer-attribute-struct-fix.patch when @:2023-12-9", "hip-cub-configure.patch when @:2023-12-9", "hip-abs-reduce-type.patch when @:2023-12-9" ], "summary": "MGARD error bounded lossy compressor For versions up to 2023-12-09, uses\na fork from https://github.com/robertu94/MGARD with patches to support\nSpack. For versions after 2023-12-09, uses the upstream repository at\nhttps://github.com/CODARcode/MGARD directly from the master branch.\n", "version": [ { "downloads": [ "https://github.com/CODARcode/MGARD/archive/refs/tags/1.5.2.tar.gz" ], "version": "1.5.2" }, { "repositories": [ { "commit": "b67a0ac963587f190e106cc3c0b30773a9455f7a", "type": "git", "url": "https://github.com/CODARcode/MGARD.git" } ], "version": "compat-2020-10-01" }, { "repositories": [ { "commit": "3c05c80a45a51bb6cc5fb5fffe7b1b16787d3366", "type": "git", "url": "https://github.com/CODARcode/MGARD.git" } ], "version": "compat-2021-11-12" }, { "repositories": [ { "commit": "72dd230ed1af88f62ed3c0f662e2387a6e587748", "type": "git", "url": "https://github.com/CODARcode/MGARD.git" } ], "version": "compat-2022-11-18" }, { "repositories": [ { "commit": "3808bd8889a0f8e6647fc0251a3189bc4dfc920f", "type": "git", "url": "https://github.com/CODARcode/MGARD.git" } ], "version": "compat-2023-01-10" }, { "repositories": [ { "commit": "a8a04a86ff30f91d0b430a7c52960a12fa119589", "type": "git", "url": "https://github.com/CODARcode/MGARD.git" } ], "version": "compat-2023-03-31" }, { "repositories": [ { "commit": "d61d8c06c49a72b2e582cc02de88b7b27e1275d2", "type": "git", "url": "https://github.com/CODARcode/MGARD.git" } ], "version": "compat-2023-12-09" } ] }, "mgardx": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja", "pkgconfig", "sz-cpp", "zstd" ], "downloads": [ "https://github.com/robertu94/MGARDx" ], "homepages": [ "https://github.com/lxAltria/MGARDx" ], "licenses": [], "maintainers": [ "robertu94" ], "name": "mgardx", "patches": [], "summary": "MGARD implementation for research purposes forked from:\nhttps://github.com/lxAltria/MGARDx\n", "version": [ { "repositories": [ { "commit": "aabe9de1a331eaeb8eec41125dd45e30c1d03af4", "type": "git", "url": "https://github.com/robertu94/MGARDx" } ], "version": "2022-01-27" } ] }, "mgcfd-op2": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "kahip", "op2-dsl" ], "downloads": [ "https://github.com/warwick-hpsc/MG-CFD-app-OP2.git" ], "homepages": [ "https://github.com/warwick-hpsc/MG-CFD-app-OP2" ], "licenses": [], "maintainers": [ "bozbez", "gihanmudalige", "tomdeakin" ], "name": "mgcfd-op2", "patches": [], "summary": "Package for the OP2 port of MGCFD: A 3D unstructured multigrid, finite-\nvolume computational fluid dynamics (CFD) mini-app for inviscid-flow.\n", "version": [ { "downloads": [ [] ], "version": "v1.0.0-rc1" } ] }, "mgis": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "cmake", "cxx", "fortran", "gmake", "ninja", "py-numpy", "py-pybind11", "python", "python-venv", "tfel" ], "downloads": [ "https://github.com/thelfer/MFrontGenericInterfaceSupport/archive/MFrontGenericInterfaceSupport-master.tar.gz", "https://github.com/thelfer/MFrontGenericInterfaceSupport/archive/MFrontGenericInterfaceSupport-3.0.1.tar.gz", 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It is a\nSOCKS5 service that you can run on your remote boxes to tunnel\nconnections through them, if for some reason SSH doesn't cut it for you.\n", "version": [ { "downloads": [ "https://github.com/rofl0r/microsocks/archive/refs/tags/v1.0.2.tar.gz" ], "version": "1.0.2" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/rofl0r/microsocks.git" } ], "version": "develop" } ] }, "migraphx": { "alias": [], "categories": [ "rocm", "detectable" ], "dependencies": [ "abseil-cpp", "blaze", "c", "cmake", "cxx", "gmake", "half", "hip", "hipblas", "hipblaslt", "llvm-amdgpu", "miopen-hip", "msgpack-c", "ninja", "nlohmann-json", "pkgconfig", "protobuf", "py-pybind11", "python", "rocblas", "rocm-cmake", "rocmlir" ], "downloads": [ "https://github.com/ROCm/AMDMIGraphX/archive/rocm-7.0.2.tar.gz", "https://github.com/ROCm/AMDMIGraphX/archive/rocm-7.0.0.tar.gz", "https://github.com/ROCm/AMDMIGraphX/archive/rocm-6.4.3.tar.gz", 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After\ninstallation you will no longer need to load modules to run\napplications. NOTE: Additional steps are required after installing the\nSpack package to enable Mii in your shell. Please see the README on the\nhomepage for more information.\n", "version": [ { "downloads": [ "https://github.com/codeandkey/mii/archive/v1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://github.com/codeandkey/mii/archive/v1.1.2.tar.gz" ], "version": "1.1.2" } ] }, "millepede": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "fortran", "gmake", "zlib-api" ], "downloads": [ "https://gitlab.desy.de/claus.kleinwort/millepede-ii/-/archive/V04-13-03/millepede-ii-V04-13-03.tar.gz", "https://gitlab.desy.de/claus.kleinwort/millepede-ii/-/archive/V04-11-01/millepede-ii-V04-11-01.tar.gz" ], "homepages": [ "https://gitlab.desy.de/claus.kleinwort/millepede-ii" ], "licenses": [ "LGPL-2.0-only" ], "maintainers": [], "name": "millepede", "patches": [], "summary": "Millepede II is a package for linear least squares fits with a large\nnumber of parameters. Developed for the alignment and calibration of\ntracking detectors.\n", "version": [ { "downloads": [ "https://gitlab.desy.de/claus.kleinwort/millepede-ii/-/archive/V04-11-01/millepede-ii-V04-11-01.tar.gz" ], "version": "04-11-01" }, { "downloads": [ "https://gitlab.desy.de/claus.kleinwort/millepede-ii/-/archive/V04-13-03/millepede-ii-V04-13-03.tar.gz" ], "version": "04-13-03" } ] }, "mimalloc": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/microsoft/mimalloc/archive/vmaster.tar.gz", "https://github.com/microsoft/mimalloc/archive/v3.1.5.tar.gz", "https://github.com/microsoft/mimalloc/archive/v3.1.4.tar.gz", "https://github.com/microsoft/mimalloc/archive/v3.0.3.tar.gz", "https://github.com/microsoft/mimalloc/archive/v3.0.1.tar.gz", "https://github.com/microsoft/mimalloc/archive/v2.2.4.tar.gz", "https://github.com/microsoft/mimalloc/archive/v2.1.9.tar.gz", 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Core math\nfunctions include BLAS, LAPACK, ScaLAPACK, sparse solvers, fast Fourier\ntransforms, and vector math. 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The mission of this project is to\nenable everyone to develop, optimize, and deploy AI models natively on\neveryone's platforms.\n", "version": [ { "repositories": [ { "commit": "ceba9511df3da06a8541916522d57fdc99cb6f54", "type": "git", "url": "https://github.com/mlc-ai/mlc-llm.git" } ], "version": "2024-06-13" } ] }, "mlhka": { "alias": [], "categories": [], "dependencies": [ "cxx" ], "downloads": [ "https://github.com/rossibarra/MLHKA.git" ], "homepages": [ "https://wright.eeb.utoronto.ca" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "mlhka", "patches": [], "summary": "A maximum likelihood ratio test of natural selection, using polymorphism\nand divergence data.\n", "version": [ { "repositories": [ { "commit": "e735ddd39073af58da21b00b27dea203736e5467", "type": "git", "url": "https://github.com/rossibarra/MLHKA.git" } ], "version": "2.1" } ] }, "mlocate": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://releases.pagure.org/mlocate/mlocate-0.26.tar.xz", "https://releases.pagure.org/mlocate/mlocate-0.25.tar.xz", "https://releases.pagure.org/mlocate/mlocate-0.24.tar.xz" ], "homepages": [ "https://pagure.io/mlocate" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "mlocate", "patches": [], "summary": "mlocate is a locate/updatedb implementation. The 'm' stands for\n\"merging\": updatedb reuses the existing database to avoid rereading most\nof the file system, which makes updatedb faster and does not trash the\nsystem caches as much.\n", "version": [ { "downloads": [ "https://releases.pagure.org/mlocate/mlocate-0.24.tar.xz" ], "version": "0.24" }, { "downloads": [ "https://releases.pagure.org/mlocate/mlocate-0.25.tar.xz" ], "version": "0.25" }, { "downloads": [ "https://releases.pagure.org/mlocate/mlocate-0.26.tar.xz" ], "version": "0.26" } ] }, "mlpack": { "alias": [], "categories": [], "dependencies": [ "armadillo", "c", "cereal", "cmake", "cxx", "ensmallen", "gmake", "go", "julia", "ninja", "py-cython", "py-numpy", "py-pandas", "py-pip", "py-setuptools", "py-wheel", "r", "r-pkgbuild", "r-rcpp", "r-rcpparmadillo", "r-rcppensmallen", "r-roxygen2", "r-testthat" ], "downloads": [ "https://github.com/mlpack/mlpack/archive/refs/tags/4.6.2.tar.gz", "https://github.com/mlpack/mlpack/archive/refs/tags/4.5.1.tar.gz", "https://github.com/mlpack/mlpack/archive/refs/tags/4.5.0.tar.gz", "https://github.com/mlpack/mlpack/archive/refs/tags/4.4.0.tar.gz", "https://github.com/mlpack/mlpack/archive/refs/tags/4.3.0.tar.gz", "https://github.com/mlpack/mlpack/archive/refs/tags/4.2.1.tar.gz", "https://github.com/mlpack/mlpack/archive/refs/tags/4.2.0.tar.gz", "https://github.com/mlpack/mlpack/archive/refs/tags/4.1.0.tar.gz", "https://github.com/mlpack/mlpack/archive/refs/tags/4.0.1.tar.gz" ], "homepages": [ "https://www.mlpack.org/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "wdconinc" ], "name": "mlpack", "patches": [ "https://github.com/mlpack/mlpack/commit/183396e51a6771d5d2b43f22b0d2a9a91785e533.patch?full_index=1 when @4:4.2.0" ], "summary": "mlpack is an intuitive, fast, and flexible header-only C++ machine\nlearning library with bindings to other languages. It is meant to be a\nmachine learning analog to LAPACK, and aims to implement a wide array of\nmachine learning methods and functions as a \"swiss army knife\" for\nmachine learning researchers.\n", "version": [ { "downloads": [ "https://github.com/mlpack/mlpack/archive/refs/tags/4.0.1.tar.gz" ], "version": "4.0.1" }, { "downloads": [ "https://github.com/mlpack/mlpack/archive/refs/tags/4.1.0.tar.gz" ], "version": "4.1.0" }, { "downloads": [ "https://github.com/mlpack/mlpack/archive/refs/tags/4.2.0.tar.gz" ], "version": "4.2.0" }, { "downloads": [ "https://github.com/mlpack/mlpack/archive/refs/tags/4.2.1.tar.gz" ], "version": "4.2.1" }, { "downloads": [ "https://github.com/mlpack/mlpack/archive/refs/tags/4.3.0.tar.gz" ], "version": "4.3.0" }, { "downloads": [ "https://github.com/mlpack/mlpack/archive/refs/tags/4.4.0.tar.gz" ], "version": "4.4.0" }, { "downloads": [ "https://github.com/mlpack/mlpack/archive/refs/tags/4.5.0.tar.gz" ], "version": "4.5.0" }, { "downloads": [ "https://github.com/mlpack/mlpack/archive/refs/tags/4.5.1.tar.gz" ], "version": "4.5.1" }, { "downloads": [ "https://github.com/mlpack/mlpack/archive/refs/tags/4.6.2.tar.gz" ], "version": "4.6.2" } ] }, "mlperf-deepcam": { "alias": [], "categories": [ "proxy-app" ], "dependencies": [ "cuda", "py-apex", "py-basemap", "py-h5py", "py-matplotlib", "py-mlperf-logging", "py-mpi4py", "py-numpy", "py-pandas", "py-pillow", "py-pycuda", "py-pytorch-gradual-warmup-lr", "py-torch", "py-wandb", "python" ], "downloads": [ "https://github.com/azrael417/mlperf-deepcam.git" ], "homepages": [ "https://github.com/azrael417/mlperf-deepcam" ], "licenses": [], "maintainers": [], "name": "mlperf-deepcam", "patches": [], "summary": "PyTorch implementation for the climate segmentation benchmark, based on\nthe Exascale Deep Learning for Climate Analytics\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/azrael417/mlperf-deepcam.git" } ], "version": "master" } ] }, "mlst": { "alias": [], "categories": [], "dependencies": [ "any2fasta", "blast-plus", "curl", "parallel", "perl", "perl-file-which", "perl-json", "perl-list-moreutils", "perl-moo" ], "downloads": [ "https://github.com/tseemann/mlst/archive/refs/tags/v2.23.0.tar.gz", "https://github.com/tseemann/mlst/archive/refs/tags/v2.22.1.tar.gz" ], "homepages": [ "https://github.com/tseemann/mlst" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "mlst", "patches": [], "summary": "Scan contig files against traditional PubMLST typing schemes\n", "version": [ { "downloads": [ "https://github.com/tseemann/mlst/archive/refs/tags/v2.22.1.tar.gz" ], "version": "2.22.1" }, { "downloads": [ "https://github.com/tseemann/mlst/archive/refs/tags/v2.23.0.tar.gz" ], "version": "2.23.0" } ] }, "mmg": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "doxygen", "fortran", "gmake", "iscdtoolbox-elasticity", "ninja", "scotch", "vtk" ], "downloads": [ "https://github.com/MmgTools/mmg/archive/v5.8.0.tar.gz", "https://github.com/MmgTools/mmg/archive/v5.7.3.tar.gz", "https://github.com/MmgTools/mmg/archive/v5.7.2.tar.gz", "https://github.com/MmgTools/mmg/archive/v5.7.1.tar.gz", "https://github.com/MmgTools/mmg/archive/v5.6.0.tar.gz", "https://github.com/MmgTools/mmg/archive/v5.5.2.tar.gz", "https://github.com/MmgTools/mmg/archive/v5.4.0.tar.gz", "https://github.com/MmgTools/mmg/archive/v5.3.13.tar.gz" ], "homepages": [ "https://www.mmgtools.org/" ], "licenses": [ "LGPL-3.0-or-later" ], "maintainers": [ "jcortial-safran" ], "name": "mmg", "patches": [], "summary": "Mmg is an open source software for simplicial remeshing. It provides 3\napplications and 4 libraries: - the mmg2d application and the libmmg2d\nlibrary: adaptation and optimization of a two-dimensional triangulation\nand generation of a triangulation from a set of points or from given\nboundary edges - the mmgs application and the libmmgs library:\nadaptation and optimization of a surface triangulation and isovalue\ndiscretization - the mmg3d application and the libmmg3d library:\nadaptation and optimization of a tetrahedral mesh and implicit domain\nmeshing - the libmmg library gathering the libmmg2d, libmmgs and\nlibmmg3d libraries.\n", "version": [ { "downloads": [ "https://github.com/MmgTools/mmg/archive/v5.3.13.tar.gz" ], "version": "5.3.13" }, { "downloads": [ "https://github.com/MmgTools/mmg/archive/v5.4.0.tar.gz" ], "version": "5.4.0" }, { "downloads": [ "https://github.com/MmgTools/mmg/archive/v5.5.2.tar.gz" ], "version": "5.5.2" }, { "downloads": [ "https://github.com/MmgTools/mmg/archive/v5.6.0.tar.gz" ], "version": "5.6.0" }, { "downloads": [ "https://github.com/MmgTools/mmg/archive/v5.7.1.tar.gz" ], "version": "5.7.1" }, { "downloads": [ "https://github.com/MmgTools/mmg/archive/v5.7.2.tar.gz" ], "version": "5.7.2" }, { "downloads": [ "https://github.com/MmgTools/mmg/archive/v5.7.3.tar.gz" ], "version": "5.7.3" }, { "downloads": [ "https://github.com/MmgTools/mmg/archive/v5.8.0.tar.gz" ], "version": "5.8.0" } ] }, "mmseqs2": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cuda", "cxx", "gmake", "mpi", "ninja", "zstd" ], "downloads": [ "https://github.com/soedinglab/MMseqs2/archive/refs/tags/18-8cc5c.tar.gz", "https://github.com/soedinglab/MMseqs2/archive/refs/tags/17-b804f.tar.gz", "https://github.com/soedinglab/MMseqs2/archive/refs/tags/16-747c6.tar.gz", "https://github.com/soedinglab/MMseqs2/archive/refs/tags/15-6f452.tar.gz", "https://github.com/soedinglab/MMseqs2/archive/refs/tags/14-7e284.tar.gz", "https://github.com/soedinglab/MMseqs2/archive/refs/tags/13-45111.tar.gz" ], "homepages": [ "https://github.com/soedinglab/MMseqs2" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "mmseqs2", "patches": [ "https://github.com/soedinglab/MMseqs2/commit/3e43617.patch?full_index=1 when @:14 %gcc@13:" ], "summary": "MMseqs2 (Many-against-Many sequence searching) is a software suite to\nsearch and cluster huge protein and nucleotide sequence sets\n", "version": [ { "downloads": [ "https://github.com/soedinglab/MMseqs2/archive/refs/tags/13-45111.tar.gz" ], "version": "13-45111" }, { "downloads": [ "https://github.com/soedinglab/MMseqs2/archive/refs/tags/14-7e284.tar.gz" ], "version": "14-7e284" }, { "downloads": [ "https://github.com/soedinglab/MMseqs2/archive/refs/tags/15-6f452.tar.gz" ], "version": "15-6f452" }, { "downloads": [ "https://github.com/soedinglab/MMseqs2/archive/refs/tags/16-747c6.tar.gz" ], "version": "16-747c6" }, { "downloads": [ "https://github.com/soedinglab/MMseqs2/archive/refs/tags/17-b804f.tar.gz" ], "version": "17-b804f" }, { "downloads": [ "https://github.com/soedinglab/MMseqs2/archive/refs/tags/18-8cc5c.tar.gz" ], "version": "18-8cc5c" } ] }, "mmv": { "alias": [], "categories": [], "dependencies": [ "c", "gmake" ], "downloads": [ "https://deb.debian.org/debian/pool/main/m/mmv/mmv_1.01b.orig.tar.gz" ], "homepages": [ "https://packages.debian.org/source/buster/mmv" ], "licenses": [], "maintainers": [], "name": "mmv", "patches": [ "better-diagnostics-for-directories-584850.diff", "format-security.diff", "man-page-examples.diff", "man-page-fixes.diff", "man-page-warning-149873.diff", "patches-as-of-mmv-1.01b-15.diff", "utime.diff" ], "summary": "Move/Copy/Append/Link multiple files mmv is a program to\nmove/copy/append/link multiple files according to a set of wildcard\npatterns. This multiple action is performed safely, i.e. without any\nunexpected deletion of files due to collisions of target names with\nexisting filenames or with other target names.\n", "version": [ { "downloads": [ "https://deb.debian.org/debian/pool/main/m/mmv/mmv_1.01b.orig.tar.gz" ], "version": "1.01b" } ] }, "moab": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "blas", "c", "cgm", "cxx", "eigen", "fortran", "gmake", "gnuconfig", "hdf5", "lapack", "libtool", "m4", "metis", "mpi", "netcdf-c", "parallel-netcdf", "parmetis", "tempestremap", "zoltan" ], "downloads": [ "https://web.cels.anl.gov/projects/sigma/downloads/moab/moab-develop.tar.gz", "https://web.cels.anl.gov/projects/sigma/downloads/moab/moab-master.tar.gz", "https://web.cels.anl.gov/projects/sigma/downloads/moab/moab-5.5.1.tar.gz", "https://web.cels.anl.gov/projects/sigma/downloads/moab/moab-5.5.0.tar.gz", "https://web.cels.anl.gov/projects/sigma/downloads/moab/moab-5.4.1.tar.gz", "https://web.cels.anl.gov/projects/sigma/downloads/moab/moab-5.4.0.tar.gz", "https://web.cels.anl.gov/projects/sigma/downloads/moab/moab-5.3.1.tar.gz", "https://web.cels.anl.gov/projects/sigma/downloads/moab/moab-5.3.0.tar.gz", "https://web.cels.anl.gov/projects/sigma/downloads/moab/moab-5.2.1.tar.gz", "https://web.cels.anl.gov/projects/sigma/downloads/moab/moab-5.2.0.tar.gz", "https://web.cels.anl.gov/projects/sigma/downloads/moab/moab-5.1.0.tar.gz", "https://web.cels.anl.gov/projects/sigma/downloads/moab/moab-5.0.0.tar.gz", "https://web.cels.anl.gov/projects/sigma/downloads/moab/moab-4.9.2.tar.gz", "https://web.cels.anl.gov/projects/sigma/downloads/moab/moab-4.9.1.tar.gz", "https://web.cels.anl.gov/projects/sigma/downloads/moab/moab-4.9.0.tar.gz", "https://web.cels.anl.gov/projects/sigma/downloads/moab/moab-4.8.2.tar.gz", "https://bitbucket.org/fathomteam/moab.git" ], "homepages": [ "https://sigma.mcs.anl.gov/moab-library" ], "licenses": [ "LGPL-3.0-only" ], "maintainers": [ "andrewdnolan", "iulian787", "vijaysm", "xylar" ], "name": "moab", "patches": [ "tools-492.patch when @4.9.2" ], "summary": "MOAB is a component for representing and evaluating mesh data. MOAB can\nstore structured and unstructured mesh, consisting of elements in the\nfinite element 'zoo.' The functional interface to MOAB is simple yet\npowerful, allowing the representation of many types of metadata commonly\nfound on the mesh. 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Molecular Density from various Ab Initio\npackages\n", "version": [ { "downloads": [ "https://ftp.science.ru.nl/Molden/molden6.5.tar.gz" ], "version": "6.5" }, { "downloads": [ "https://ftp.science.ru.nl/Molden/molden6.6.tar.gz" ], "version": "6.6" }, { "downloads": [ "https://ftp.science.ru.nl/Molden/molden6.7.tar.gz" ], "version": "6.7" }, { "downloads": [ "https://ftp.science.ru.nl/Molden/molden7.3.tar.gz" ], "version": "7.3" } ] }, "molgw": { "alias": [], "categories": [], "dependencies": [ "blas", "cxx", "fortran", "gmake", "intel-oneapi-mkl", "lapack", "libcint", "libxc", "mpi", "openblas", "scalapack" ], "downloads": [ "https://github.com/molgw/molgw/archive/v3.4.tar.gz", "https://github.com/molgw/molgw/archive/v3.3.tar.gz", "https://github.com/molgw/molgw/archive/v3.2.tar.gz", "https://github.com/molgw/molgw.git" ], "homepages": [ "https://github.com/molgw/molgw" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [ "bruneval" ], "name": "molgw", "patches": [], "summary": "MOLGW is a quantum chemistry code that implements the many-body\nperturbation theory (MBPT) to describe the excited electronic states in\nfinite systems (atoms, molecules, clusters). MOLGW implements the GW\napproximation for the self-energy (ionization and affinity) and the\nBethe-Salpeter equation for the optical excitations. MOLGW also applies\nthe real-time time-dependent density-functional theory (RT-TDDFT). MOLGW\nemploys standard Gaussian basis set.\n", "version": [ { "downloads": [ "https://github.com/molgw/molgw/archive/v3.2.tar.gz" ], "version": "3.2" }, { "downloads": [ "https://github.com/molgw/molgw/archive/v3.3.tar.gz" ], "version": "3.3" }, { "downloads": [ "https://github.com/molgw/molgw/archive/v3.4.tar.gz" ], "version": "3.4" } ] }, "mongo-c-driver": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "cmake", "cxx", "gmake", "gnuconfig", "libbson", "libtool", "ninja", "openssl", "pkgconfig", "snappy", "zlib-api", "zstd" ], "downloads": [ "https://github.com/mongodb/mongo-c-driver/archive/refs/tags/1.25.0.tar.gz" ], "homepages": [ "https://github.com/mongodb/mongo-c-driver" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "michaelkuhn" ], "name": "mongo-c-driver", "patches": [ "https://github.com/mongodb/mongo-c-driver/commit/5d759ff62f0c1389075b8b40932b7fdc11b4e12d.patch?full_index=1 when @1.8.1" ], "summary": "libmongoc is a client library written in C for MongoDB.\n", "version": [ { "downloads": [ "https://github.com/mongodb/mongo-c-driver/releases/download/1.16.2/mongo-c-driver-1.16.2.tar.gz" ], "version": "1.16.2" }, { "downloads": [ "https://github.com/mongodb/mongo-c-driver/releases/download/1.17.0/mongo-c-driver-1.17.0.tar.gz" ], "version": "1.17.0" }, { "downloads": [ "https://github.com/mongodb/mongo-c-driver/releases/download/1.17.5/mongo-c-driver-1.17.5.tar.gz" ], "version": "1.17.5" }, { "downloads": [ "https://github.com/mongodb/mongo-c-driver/releases/download/1.17.6/mongo-c-driver-1.17.6.tar.gz" ], "version": "1.17.6" }, { "downloads": [ "https://github.com/mongodb/mongo-c-driver/releases/download/1.21.0/mongo-c-driver-1.21.0.tar.gz" ], "version": "1.21.0" }, { "downloads": [ "https://github.com/mongodb/mongo-c-driver/releases/download/1.23.3/mongo-c-driver-1.23.3.tar.gz" ], "version": "1.23.3" }, { "downloads": [ "https://github.com/mongodb/mongo-c-driver/releases/download/1.24.4/mongo-c-driver-1.24.4.tar.gz" ], "version": "1.24.4" }, { "downloads": [ "https://github.com/mongodb/mongo-c-driver/archive/refs/tags/1.27.2.tar.gz" ], "version": "1.27.2" }, { "downloads": [ "https://github.com/mongodb/libbson/releases/download/1.6.2/libbson-1.6.2.tar.gz" ], "version": "1.6.2" }, { "downloads": [ "https://github.com/mongodb/libbson/releases/download/1.6.3/libbson-1.6.3.tar.gz" ], "version": "1.6.3" }, { "downloads": [ "https://github.com/mongodb/libbson/releases/download/1.7.0/libbson-1.7.0.tar.gz" ], "version": "1.7.0" }, { "downloads": [ "https://github.com/mongodb/libbson/releases/download/1.8.0/libbson-1.8.0.tar.gz" ], "version": "1.8.0" }, { "downloads": [ "https://github.com/mongodb/libbson/releases/download/1.8.1/libbson-1.8.1.tar.gz" ], "version": "1.8.1" }, { "downloads": [ "https://github.com/mongodb/libbson/releases/download/1.9.1/libbson-1.9.1.tar.gz" ], "version": "1.9.1" }, { "downloads": [ "https://github.com/mongodb/libbson/releases/download/1.9.3/libbson-1.9.3.tar.gz" ], "version": "1.9.3" }, { "downloads": [ "https://github.com/mongodb/libbson/releases/download/1.9.4/libbson-1.9.4.tar.gz" ], "version": "1.9.4" }, { "downloads": [ "https://github.com/mongodb/libbson/releases/download/1.9.5/libbson-1.9.5.tar.gz" ], "version": "1.9.5" } ] }, "mongo-cxx-driver": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "gmake", "mongo-c-driver", "ninja" ], "downloads": [ "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.10.1.tar.gz", "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.7.0.tar.gz", "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.6.7.tar.gz", "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.6.6.tar.gz", "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.6.5.tar.gz", "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.6.4.tar.gz", "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.6.3.tar.gz", "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.6.2.tar.gz", "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.6.1.tar.gz", "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.6.0.tar.gz", "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.5.1.tar.gz", "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.5.0.tar.gz", "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.4.2.tar.gz", "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.4.1.tar.gz", "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.4.0.tar.gz", "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.3.2.tar.gz", "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.3.1.tar.gz", "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.3.0.tar.gz", "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.2.1.tar.gz", "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.2.0.tar.gz", "https://github.com/mongodb/mongo-cxx-driver" ], "homepages": [ "http://www.mongocxx.org" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "mongo-cxx-driver", "patches": [], "summary": "C++ Driver for MongoDB\n", "version": [ { "downloads": [ "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.10.1.tar.gz" ], "version": "3.10.1" }, { "downloads": [ "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.2.0.tar.gz" ], "version": "3.2.0" }, { "downloads": [ "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.2.1.tar.gz" ], "version": "3.2.1" }, { "downloads": [ "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.3.0.tar.gz" ], "version": "3.3.0" }, { "downloads": [ "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.3.1.tar.gz" ], "version": "3.3.1" }, { "downloads": [ "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.3.2.tar.gz" ], "version": "3.3.2" }, { "downloads": [ "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.4.0.tar.gz" ], "version": "3.4.0" }, { "downloads": [ "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.4.1.tar.gz" ], "version": "3.4.1" }, { "downloads": [ "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.4.2.tar.gz" ], "version": "3.4.2" }, { "downloads": [ "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.5.0.tar.gz" ], "version": "3.5.0" }, { "downloads": [ "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.5.1.tar.gz" ], "version": "3.5.1" }, { "downloads": [ "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.6.0.tar.gz" ], "version": "3.6.0" }, { "downloads": [ "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.6.1.tar.gz" ], "version": "3.6.1" }, { "downloads": [ "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.6.2.tar.gz" ], "version": "3.6.2" }, { "downloads": [ "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.6.3.tar.gz" ], "version": "3.6.3" }, { "downloads": [ "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.6.4.tar.gz" ], "version": "3.6.4" }, { "downloads": [ "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.6.5.tar.gz" ], "version": "3.6.5" }, { "downloads": [ "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.6.6.tar.gz" ], "version": "3.6.6" }, { "downloads": [ "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.6.7.tar.gz" ], "version": "3.6.7" }, { "downloads": [ "https://github.com/mongodb/mongo-cxx-driver/archive/refs/tags/r3.7.0.tar.gz" ], "version": "3.7.0" } ] }, "mongodb-async-driver": { "alias": [], "categories": [], "dependencies": [ "java", "maven" ], "downloads": [ "https://github.com/allanbank/mongodb-async-driver/archive/rel_2.0.1.tar.gz", "https://github.com/allanbank/mongodb-async-driver/archive/rel_2.0.0.tar.gz" ], "homepages": [ "http://www.allanbank.com/mongodb-async-driver/" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "mongodb-async-driver", "patches": [], "summary": "The MongoDB Asynchronous Java Driver.\n", "version": [ { "downloads": [ "https://github.com/allanbank/mongodb-async-driver/archive/rel_2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://github.com/allanbank/mongodb-async-driver/archive/rel_2.0.1.tar.gz" ], "version": "2.0.1" } ] }, "mono": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "gnuconfig", "iconv", "perl", "python" ], "downloads": [ "https://download.mono-project.com/sources/mono/mono-6.12.0.122.tar.xz", "https://download.mono-project.com/sources/mono/mono-6.8.0.123.tar.xz", "https://download.mono-project.com/sources/mono/mono-6.8.0.105.tar.xz", "https://download.mono-project.com/sources/mono/mono-5.18.0.240.tar.bz2", "https://download.mono-project.com/sources/mono/mono-5.16.0.220.tar.bz2", "https://download.mono-project.com/sources/mono/mono-5.14.0.177.tar.bz2", "https://download.mono-project.com/sources/mono/mono-5.12.0.309.tar.bz2", "https://download.mono-project.com/sources/mono/mono-5.10.1.57.tar.bz2", "https://download.mono-project.com/sources/mono/mono-5.4.1.7.tar.bz2", "https://download.mono-project.com/sources/mono/mono-5.4.0.167.tar.bz2", "https://download.mono-project.com/sources/mono/mono-5.0.1.1.tar.bz2", "https://download.mono-project.com/sources/mono/mono-4.8.0.524.tar.bz2" ], "homepages": [ "https://www.mono-project.com/" ], "licenses": [ "MIT" ], "maintainers": [ "grospelliergilles" ], "name": "mono", "patches": [], "summary": "Mono is a software platform designed to allow developers to easily\ncreate cross platform applications. It is an open source implementation\nof Microsoft's .NET Framework based on the ECMA standards for C# and the\nCommon Language Runtime.\n", "version": [ { "downloads": [ "https://download.mono-project.com/sources/mono/mono-4.8.0.524.tar.bz2" ], "version": "4.8.0.524" }, { "downloads": [ "https://download.mono-project.com/sources/mono/mono-5.0.1.1.tar.bz2" ], "version": "5.0.1.1" }, { "downloads": [ "https://download.mono-project.com/sources/mono/mono-5.10.1.57.tar.bz2" ], "version": "5.10.1.57" }, { "downloads": [ "https://download.mono-project.com/sources/mono/mono-5.12.0.309.tar.bz2" ], "version": "5.12.0.309" }, { "downloads": [ "https://download.mono-project.com/sources/mono/mono-5.14.0.177.tar.bz2" ], "version": "5.14.0.177" }, { "downloads": [ "https://download.mono-project.com/sources/mono/mono-5.16.0.220.tar.bz2" ], "version": "5.16.0.220" }, { "downloads": [ "https://download.mono-project.com/sources/mono/mono-5.18.0.240.tar.bz2" ], "version": "5.18.0.240" }, { "downloads": [ "https://download.mono-project.com/sources/mono/mono-5.4.0.167.tar.bz2" ], "version": "5.4.0.167" }, { "downloads": [ "https://download.mono-project.com/sources/mono/mono-5.4.1.7.tar.bz2" ], "version": "5.4.1.7" }, { "downloads": [ "https://download.mono-project.com/sources/mono/mono-6.12.0.122.tar.xz" ], "version": "6.12.0.122" }, { "downloads": [ "https://download.mono-project.com/sources/mono/mono-6.8.0.105.tar.xz" ], "version": "6.8.0.105" }, { "downloads": [ "https://download.mono-project.com/sources/mono/mono-6.8.0.123.tar.xz" ], "version": "6.8.0.123" } ] }, "montage": { "alias": [], "categories": [], "dependencies": [ "bzip2", "c", "cxx", "fortran", "freetype", "gmake", "libnsl", "libpng" ], "downloads": [ "http://montage.ipac.caltech.edu/download/Montage_v6.0.tar.gz" ], "homepages": [ "http://montage.ipac.caltech.edu/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "snehring" ], "name": "montage", "patches": [], "summary": "Montage is a toolkit for assembling Flexible Image Transport System\n(FITS) images into custom mosaics.\n", "version": [ { "downloads": [ "http://montage.ipac.caltech.edu/download/Montage_v6.0.tar.gz" ], "version": "6.0" } ] }, "moosefs": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://github.com/moosefs/moosefs/archive/v3.0.109.tar.gz", "https://github.com/moosefs/moosefs/archive/v3.0.108.tar.gz", "https://github.com/moosefs/moosefs/archive/v3.0.107.tar.gz", "https://github.com/moosefs/moosefs/archive/v3.0.105.tar.gz", "https://github.com/moosefs/moosefs/archive/v3.0.104.tar.gz", "https://github.com/moosefs/moosefs/archive/v3.0.103.tar.gz" ], "homepages": [ "https://github.com/moosefs/moosefs" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "moosefs", "patches": [], "summary": " MooseFS is a Petabyte Open Source Network Distributed File System. It\nis easy to deploy and maintain, fault tolerant, highly performing,\neasily scalable, POSIX compliant.\n", "version": [ { "downloads": [ "https://github.com/moosefs/moosefs/archive/v3.0.103.tar.gz" ], "version": "3.0.103" }, { "downloads": [ "https://github.com/moosefs/moosefs/archive/v3.0.104.tar.gz" ], "version": "3.0.104" }, { "downloads": [ "https://github.com/moosefs/moosefs/archive/v3.0.105.tar.gz" ], "version": "3.0.105" }, { "downloads": [ "https://github.com/moosefs/moosefs/archive/v3.0.107.tar.gz" ], "version": "3.0.107" }, { "downloads": [ "https://github.com/moosefs/moosefs/archive/v3.0.108.tar.gz" ], "version": "3.0.108" }, { "downloads": [ "https://github.com/moosefs/moosefs/archive/v3.0.109.tar.gz" ], "version": "3.0.109" } ] }, "moreutils": { "alias": [], "categories": [], "dependencies": [ "c", "docbook-xsl", "gmake", "libxml2", "libxslt", "perl" ], "downloads": [ "https://deb.debian.org/debian/pool/main/m/moreutils/moreutils_0.65.orig.tar.xz", "https://deb.debian.org/debian/pool/main/m/moreutils/moreutils_0.63.orig.tar.xz" ], "homepages": [ "https://joeyh.name/code/moreutils" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [ "matthiasdiener" ], "name": "moreutils", "patches": [], "summary": "Additional Unix utilities. 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Mosh is a replacement for SSH. 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It implements a\nrobust iterative alignment algorithm that delivers precise measurement\nand correction of both global and non-uniform local motions at single\npixel level, suitable for both single-particle and tomographic images.\nMotionCor2 is sufficiently fast to keep up with automated data\ncollection.\n", "version": [ { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/MotionCor2_1.4.7.zip" ], "version": "1.4.7" }, { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/MotionCor2_1.6.4.zip" ], "version": "1.6.4" } ] }, "mount-point-attributes": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "cxx", "gmake", "gnuconfig", "libtool" ], "downloads": [ "https://github.com/LLNL/MountPointAttributes/files/2270601/mountpointattr-master.tar.gz", "https://github.com/LLNL/MountPointAttributes/releases/download/v1.1.1/mountpointattr-1.1.1.tar.gz", "https://github.com/LLNL/MountPointAttributes/files/2270601/mountpointattr-1.1.tar.gz", "https://github.com/LLNL/MountPointAttributes.git" ], "homepages": [ "https://github.com/LLNL/MountPointAttributes" ], "licenses": [], "maintainers": [ "lee218llnl" ], "name": "mount-point-attributes", "patches": [ "mpa_type_conversion.patch when @=1.1" ], "summary": "Library to turn expensive, non-scalable file system calls into simple\nstring comparison operations.\n", "version": [ { "downloads": [ "https://github.com/LLNL/MountPointAttributes/files/2270601/mountpointattr-1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ "https://github.com/LLNL/MountPointAttributes/releases/download/v1.1.1/mountpointattr-1.1.1.tar.gz" ], "version": "1.1.1" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/LLNL/MountPointAttributes.git" } ], "version": "master" } ] }, "mozjpeg": { "alias": [ { "alias_for": "mozjpeg", "name": "jpeg" } ], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "libpng", "nasm", "ninja" ], "downloads": [ "https://github.com/mozilla/mozjpeg/archive/refs/tags/v4.1.1.tar.gz" ], "homepages": [ "https://github.com/mozilla/mozjpeg" ], "licenses": [ "Zlib" ], "maintainers": [ "RemiLacroix-IDRIS" ], "name": "mozjpeg", "patches": [], "summary": "MozJPEG is a patched version of libjpeg-turbo which improves JPEG\ncompression efficiency achieving higher visual quality and smaller file\nsizes at the same time\n", "version": [ { "downloads": [ "https://github.com/mozilla/mozjpeg/archive/refs/tags/v4.1.1.tar.gz" ], "version": "4.1.1" } ] }, "mozjs": { "alias": [], "categories": [], "dependencies": [ "c", "cbindgen", "curl", "cxx", "gmake", "gnuconfig", "py-pip", "python", "rust", "zlib-api" ], "downloads": [ "https://ftp.mozilla.org/pub/firefox/releases/140.3.1esr/source/firefox-140.3.1esr.source.tar.xz", "https://ftp.mozilla.org/pub/firefox/releases/128.1.0esr/source/firefox-128.1.0esr.source.tar.xz", "https://ftp.mozilla.org/pub/firefox/releases/115.28.0esr/source/firefox-115.28.0esr.source.tar.xz" ], "homepages": [ "https://spidermonkey.dev/" ], "licenses": [ "MPL-2.0" ], "maintainers": [ "KineticTheory" ], "name": "mozjs", "patches": [], "summary": "SpiderMonkey is Mozilla\u2019s JavaScript and WebAssembly Engine, used in\nFirefox, Servo and various other projects. 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maximizing a\npseudo-likelihood function.\n", "version": [ { "downloads": [ "https://faculty.franklin.uga.edu/lliu/sites/faculty.franklin.uga.edu.lliu/files/mpest_1.5.zip" ], "version": "1.5" } ] }, "mpfi": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "gmake", "gmp", "gnuconfig", "libtool", "m4", "mpfr", "texinfo" ], "downloads": [ "https://gforge.inria.fr/frs/download.php/file/38111/mpfi-1.5.4.tgz", "https://gforge.inria.fr/frs/download.php/file/37331/mpfi-1.5.3.tar.bz2" ], "homepages": [ "https://perso.ens-lyon.fr/nathalie.revol/software.html" ], "licenses": [ "LGPL-3.0-only" ], "maintainers": [], "name": "mpfi", "patches": [], "summary": "Library for arbitrary precision interval arithmetic based on MPFR\n", "version": [ { "downloads": [ "https://gforge.inria.fr/frs/download.php/file/37331/mpfi-1.5.3.tar.bz2" ], "version": "1.5.3" }, { "downloads": [ "https://gforge.inria.fr/frs/download.php/file/38111/mpfi-1.5.4.tgz" ], "version": "1.5.4" } ] }, "mpfr": { "alias": [], "categories": [], "dependencies": [ "autoconf", "autoconf-archive", "automake", "c", "gmake", "gmp", "gnuconfig", "libtool", "m4", "texinfo" ], "downloads": [ "https://ftpmirror.gnu.org/mpfr/mpfr-4.2.1.tar.bz2", "https://ftpmirror.gnu.org/mpfr/mpfr-4.2.0.tar.bz2", "https://ftpmirror.gnu.org/mpfr/mpfr-4.1.1.tar.bz2", "https://ftpmirror.gnu.org/mpfr/mpfr-4.1.0.tar.bz2", "https://ftpmirror.gnu.org/mpfr/mpfr-4.0.2.tar.bz2", "https://ftpmirror.gnu.org/mpfr/mpfr-4.0.1.tar.bz2", "https://ftpmirror.gnu.org/mpfr/mpfr-4.0.0.tar.bz2", "https://ftpmirror.gnu.org/mpfr/mpfr-3.1.6.tar.bz2", "https://ftpmirror.gnu.org/mpfr/mpfr-3.1.5.tar.bz2", "https://ftpmirror.gnu.org/mpfr/mpfr-3.1.4.tar.bz2", "https://ftpmirror.gnu.org/mpfr/mpfr-3.1.3.tar.bz2", "https://ftpmirror.gnu.org/mpfr/mpfr-3.1.2.tar.bz2" ], "homepages": [ "https://www.mpfr.org/" ], "licenses": [ "LGPL-3.0-or-later" ], "maintainers": [ "cessenat" ], "name": "mpfr", "patches": [ "https://www.mpfr.org/mpfr-4.2.1/allpatches when @4.2.1", "https://www.mpfr.org/mpfr-4.2.0/allpatches when @4.2.0", "https://www.mpfr.org/mpfr-4.1.1/allpatches when @4.1.1", "https://www.mpfr.org/mpfr-4.1.0/allpatches when @4.1.0", "https://www.mpfr.org/mpfr-4.0.2/allpatches when @4.0.2", "https://www.mpfr.org/mpfr-4.0.1/allpatches when @4.0.1", "https://www.mpfr.org/mpfr-3.1.6/allpatches when @3.1.6", "https://www.mpfr.org/mpfr-3.1.5/allpatches when @3.1.5", "https://www.mpfr.org/mpfr-3.1.4/allpatches when @3.1.4", "https://www.mpfr.org/mpfr-3.1.3/allpatches when @3.1.3", "https://www.mpfr.org/mpfr-3.1.2/allpatches when @3.1.2" ], "summary": "The MPFR library is a C library for multiple-precision floating-point\ncomputations with correct rounding.\n", "version": [ { "downloads": [ "https://ftpmirror.gnu.org/mpfr/mpfr-3.1.2.tar.bz2" ], "version": "3.1.2" }, { "downloads": [ "https://ftpmirror.gnu.org/mpfr/mpfr-3.1.3.tar.bz2" ], "version": "3.1.3" }, { "downloads": [ "https://ftpmirror.gnu.org/mpfr/mpfr-3.1.4.tar.bz2" ], "version": "3.1.4" }, { "downloads": [ "https://ftpmirror.gnu.org/mpfr/mpfr-3.1.5.tar.bz2" ], "version": "3.1.5" }, { "downloads": [ "https://ftpmirror.gnu.org/mpfr/mpfr-3.1.6.tar.bz2" ], "version": "3.1.6" }, { "downloads": [ "https://ftpmirror.gnu.org/mpfr/mpfr-4.0.0.tar.bz2" ], "version": "4.0.0" }, { "downloads": [ "https://ftpmirror.gnu.org/mpfr/mpfr-4.0.1.tar.bz2" ], "version": "4.0.1" }, { "downloads": [ "https://ftpmirror.gnu.org/mpfr/mpfr-4.0.2.tar.bz2" ], "version": "4.0.2" }, { "downloads": [ "https://ftpmirror.gnu.org/mpfr/mpfr-4.1.0.tar.bz2" ], "version": "4.1.0" }, { "downloads": [ "https://ftpmirror.gnu.org/mpfr/mpfr-4.1.1.tar.bz2" ], "version": "4.1.1" }, { "downloads": [ "https://ftpmirror.gnu.org/mpfr/mpfr-4.2.0.tar.bz2" ], "version": "4.2.0" }, { "downloads": [ "https://ftpmirror.gnu.org/mpfr/mpfr-4.2.1.tar.bz2" ], "version": "4.2.1" } ] }, "mpi": { "alias": [ { "alias_for": "spectrum-mpi", "name": "mpi" } ], "categories": [ "detectable" ], "dependencies": [ "c" ], "downloads": [], "homepages": [ "https://www-03.ibm.com/systems/spectrum-computing/products/mpi" ], "licenses": [], "maintainers": [], "name": "spectrum-mpi", "patches": [], "summary": "IBM MPI implementation from Spectrum MPI.\n", "version": [ { "downloads": [ [] ], "version": "10.4" } ] }, "mpi-bash": { "alias": [], "categories": [], "dependencies": [ "bash", "c", "gmake", "gnuconfig", "libcircle", "mpi" ], "downloads": [ "https://github.com/lanl/MPI-Bash/releases/download/v1.4/mpibash-1.4.tar.gz", "https://github.com/lanl/MPI-Bash/releases/download/v1.3/mpibash-1.3.tar.gz", "https://github.com/lanl/MPI-Bash/releases/download/v1.2/mpibash-1.2.tar.gz" ], "homepages": [ "https://github.com/lanl/MPI-Bash" ], "licenses": [], "maintainers": [], "name": "mpi-bash", "patches": [], "summary": "Parallel scripting right from the Bourne-Again Shell (Bash)\n", "version": [ { "downloads": [ "https://github.com/lanl/MPI-Bash/releases/download/v1.2/mpibash-1.2.tar.gz" ], "version": "1.2" }, { "downloads": [ "https://github.com/lanl/MPI-Bash/releases/download/v1.3/mpibash-1.3.tar.gz" ], "version": "1.3" }, { "downloads": [ "https://github.com/lanl/MPI-Bash/releases/download/v1.4/mpibash-1.4.tar.gz" ], "version": "1.4" } ] }, "mpi-rockstar": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "hdf5", "libtirpc", "mpi" ], "downloads": [ "https://github.com/Tomoaki-Ishiyama/mpi-rockstar/archive/v1.0.0-31-g97eb6c1.tar.gz" ], "homepages": [ "https://github.com/Tomoaki-Ishiyama/mpi-rockstar" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "mpi-rockstar", "patches": [], "summary": "MPI-Rockstar: a Hybrid MPI and OpenMP Parallel Implementation of the\nRockstar Halo finder\n", "version": [ { "downloads": [ "https://github.com/Tomoaki-Ishiyama/mpi-rockstar/archive/v1.0.0-31-g97eb6c1.tar.gz" ], "version": "v1.0.0-31-g97eb6c1" } ] }, "mpi-serial": { "alias": [ { "alias_for": "mpi-serial", "name": "mpi" } ], "categories": [], "dependencies": [ "autoconf", "automake", "c", "fortran", "gmake", "gnuconfig", "libtool" ], "downloads": [ "https://github.com/ESMCI/mpi-serial/archive/refs/tags/MPIserial_2.5.3.tar.gz", "https://github.com/ESMCI/mpi-serial/archive/refs/tags/MPIserial_2.5.2.tar.gz", "https://github.com/ESMCI/mpi-serial/archive/refs/tags/MPIserial_2.5.0.tar.gz", "https://github.com/ESMCI/mpi-serial/archive/refs/tags/MPIserial_2.3.0.tar.gz" ], "homepages": [ "https://github.com/ESMCI/mpi-serial" ], "licenses": [], "maintainers": [ "jedwards4b" ], "name": "mpi-serial", "patches": [], "summary": "A single processor implementation of the mpi library.\n", "version": [ { "downloads": [ "https://github.com/ESMCI/mpi-serial/archive/refs/tags/MPIserial_2.3.0.tar.gz" ], "version": "2.3.0" }, { "downloads": [ "https://github.com/ESMCI/mpi-serial/archive/refs/tags/MPIserial_2.5.0.tar.gz" ], "version": "2.5.0" }, { "downloads": [ "https://github.com/ESMCI/mpi-serial/archive/refs/tags/MPIserial_2.5.2.tar.gz" ], "version": "2.5.2" }, { "downloads": [ "https://github.com/ESMCI/mpi-serial/archive/refs/tags/MPIserial_2.5.3.tar.gz" ], "version": "2.5.3" } ] }, "mpi-sync-clocks": { "alias": [], "categories": [], "dependencies": [ "autoconf", "c", "gmake", "gnuconfig", "mpi" ], "downloads": [ "https://pm2.gitlabpages.inria.fr/releases/mpi_sync_clocks-master.tar.gz", "https://pm2.gitlabpages.inria.fr/releases/mpi_sync_clocks-1.0.tar.gz", "https://gitlab.inria.fr/pm2/pm2.git" ], "homepages": [ "https://pm2.gitlabpages.inria.fr/" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [ "a-denis" ], "name": "mpi-sync-clocks", "patches": [], "summary": "MPI Sync Clocks. MPI Sync Clocks is an implementation of synchronized\nclocks using MPI.\n", "version": [ { "downloads": [ "https://pm2.gitlabpages.inria.fr/releases/mpi_sync_clocks-1.0.tar.gz" ], "version": "1.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://gitlab.inria.fr/pm2/pm2.git" } ], "version": "master" } ] }, "mpi-test-suite": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gengetopt", "gmake", "gnuconfig", "libtool", "m4", "mpi" ], "downloads": [ "https://github.com/open-mpi/mpi-test-suite/archive/refs/tags/v1.1.1.tar.gz" ], "homepages": [ "https://github.com/open-mpi/mpi-test-suite" ], "licenses": [ "BSD-3-Clause-Open-MPI" ], "maintainers": [ "jcortial-safran" ], "name": "mpi-test-suite", "patches": [], "summary": "The MPI-testsuite was initially developed for the use with PACX-MPI and\nhas been extended within the Open MPI project. The main focus is on: -\nHigh degree of code coverage through combinations of tests. - Easy\nmaintainability, - Easy integration of new tests, - Rich underlying\nfunctionality for flexible tests (convenience functions for datatypes,\ncomms and checking), - Only a single binary (for single, since expensive\nMPI_Init/MPI_Finalize) to make it as quick and easy as possible to run\nautomatically\n", "version": [ { "downloads": [ "https://github.com/open-mpi/mpi-test-suite/archive/refs/tags/v1.1.1.tar.gz" ], "version": "1.1.1" } ] }, "mpibenchmark": { "alias": [], "categories": [], "dependencies": [ "autoconf", "c", "gmake", "gnuconfig", "gnuplot", "hwloc", "mpi", "pkgconfig" ], "downloads": [ "https://pm2.gitlabpages.inria.fr/releases/mpibenchmark-master.tar.gz", "https://pm2.gitlabpages.inria.fr/releases/mpibenchmark-0.6.tar.gz", "https://pm2.gitlabpages.inria.fr/releases/mpibenchmark-0.5.tar.gz", "https://pm2.gitlabpages.inria.fr/releases/mpibenchmark-0.4.tar.gz", "https://pm2.gitlabpages.inria.fr/releases/mpibenchmark-0.3.tar.gz", "https://pm2.gitlabpages.inria.fr/releases/mpibenchmark-0.2.tar.gz", "https://pm2.gitlabpages.inria.fr/releases/mpibenchmark-0.1.tar.gz", "https://gitlab.inria.fr/pm2/pm2.git" ], "homepages": [ "https://pm2.gitlabpages.inria.fr/mpibenchmark/" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [ "a-denis" ], "name": "mpibenchmark", "patches": [], "summary": "MadMPI benchmark. MadMPI benchmark is benchmark designed to assess the\nperformance of MPI libraries using various metrics: point-to-point\ncommunications, collectives, communication/computation overlap,\nscalability with the number of requests, RMA, multi-threaded\ncommunications. It may be used to benchmark any MPI library.\n", "version": [ { "downloads": [ "https://pm2.gitlabpages.inria.fr/releases/mpibenchmark-0.1.tar.gz" ], "version": "0.1" }, { "downloads": [ "https://pm2.gitlabpages.inria.fr/releases/mpibenchmark-0.2.tar.gz" ], "version": "0.2" }, { "downloads": [ "https://pm2.gitlabpages.inria.fr/releases/mpibenchmark-0.3.tar.gz" ], "version": "0.3" }, { "downloads": [ "https://pm2.gitlabpages.inria.fr/releases/mpibenchmark-0.4.tar.gz" ], "version": "0.4" }, { "downloads": [ "https://pm2.gitlabpages.inria.fr/releases/mpibenchmark-0.5.tar.gz" ], "version": "0.5" }, { "downloads": [ "https://pm2.gitlabpages.inria.fr/releases/mpibenchmark-0.6.tar.gz" ], "version": "0.6" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://gitlab.inria.fr/pm2/pm2.git" } ], "version": "master" } ] }, "mpibind": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "cxx", "flux-core", "gmake", "gnuconfig", "hwloc", "libtool", "m4", "pkgconfig", "py-cffi", "python" ], "downloads": [ "https://github.com/LLNL/mpibind.git" ], "homepages": [ "https://mpibind.llnl.gov" ], "licenses": [ "MIT" ], "maintainers": [ "eleon" ], "name": "mpibind", "patches": [], "summary": "A portable runtime library that automatically maps parallel applications\nto heterogeneous hardware architectures, optimizing resource affinity\nfor CPUs, GPUs, and memory\n", "version": [ { "repositories": [ { "commit": "8cd20ed9353a69336415193da90d86de789b1e3c", "type": "git", "url": "https://github.com/LLNL/mpibind.git" } ], "version": "0.20.0" }, { "repositories": [ { "commit": "e8dca93adff52d464bffe7281f7ac0c3a63be4c0", "type": "git", "url": "https://github.com/LLNL/mpibind.git" } ], "version": "0.21.0" }, { "repositories": [ { "commit": "7181024843b110074ad87009a7a671bb666f90a4", "type": "git", "url": "https://github.com/LLNL/mpibind.git" } ], "version": "0.22.0" }, { "repositories": [ { "commit": 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"https://www.mpich.org/static/downloads/3.4.3/mpich-3.4.3.tar.gz", "https://www.mpich.org/static/downloads/3.4.2/mpich-3.4.2.tar.gz", "https://www.mpich.org/static/downloads/3.4.1/mpich-3.4.1.tar.gz", "https://www.mpich.org/static/downloads/3.4/mpich-3.4.tar.gz", "https://www.mpich.org/static/downloads/3.3.2/mpich-3.3.2.tar.gz", "https://www.mpich.org/static/downloads/3.3.1/mpich-3.3.1.tar.gz", "https://www.mpich.org/static/downloads/3.3/mpich-3.3.tar.gz", "https://www.mpich.org/static/downloads/3.2.1/mpich-3.2.1.tar.gz", "https://www.mpich.org/static/downloads/3.2/mpich-3.2.tar.gz", "https://www.mpich.org/static/downloads/3.1.4/mpich-3.1.4.tar.gz", "https://www.mpich.org/static/downloads/3.1.3/mpich-3.1.3.tar.gz", "https://www.mpich.org/static/downloads/3.1.2/mpich-3.1.2.tar.gz", "https://www.mpich.org/static/downloads/3.1.1/mpich-3.1.1.tar.gz", "https://www.mpich.org/static/downloads/3.1/mpich-3.1.tar.gz", "https://www.mpich.org/static/downloads/3.0.4/mpich-3.0.4.tar.gz", 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"https://github.com/pmodels/mpich/commit/3a1f618e017547c9710ab4fb01ae258a01477190.patch?full_index=1 when @4.0:4.0.2", "mpich34_yaksa_hindexed.patch when @3.4 datatype-engine=yaksa", "mpich34_yaksa_hindexed.patch when @3.4 datatype-engine=auto device=ch4", "https://github.com/pmodels/mpich/commit/d901a0b731035297dd6598888c49322e2a05a4e0.patch?full_index=1 when @3.2.2:4.1.1", "mpich32_411_CFI_configure.patch when @3.2.2:4.1.1" ], "summary": "MPICH is a high performance and widely portable implementation of the\nMessage Passing Interface (MPI) standard.\n", "version": [ { "downloads": [ "https://www.mpich.org/static/downloads/3.0.4/mpich-3.0.4.tar.gz" ], "version": "3.0.4" }, { "downloads": [ "https://www.mpich.org/static/downloads/3.1/mpich-3.1.tar.gz" ], "version": "3.1" }, { "downloads": [ "https://www.mpich.org/static/downloads/3.1.1/mpich-3.1.1.tar.gz" ], "version": "3.1.1" }, { "downloads": [ "https://www.mpich.org/static/downloads/3.1.2/mpich-3.1.2.tar.gz" ], "version": "3.1.2" }, 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High-\nperformance computing users often generate large datasets with parallel\napplications that run with many processes (millions in some cases).\nHowever those users are then stuck with single-process tools like cp and\nrm to manage their datasets. This suite provides MPI-based tools to\nhandle typical jobs like copy, remove, and compare for such datasets,\nproviding speedups of up to 20-30x.\n", "version": [ { "downloads": [ "https://github.com/hpc/mpifileutils/archive/v0.10.tar.gz" ], "version": "0.10" }, { "downloads": [ "https://github.com/hpc/mpifileutils/archive/v0.10.1.tar.gz" ], "version": "0.10.1" }, { "downloads": [ "https://github.com/hpc/mpifileutils/archive/v0.11.tar.gz" ], "version": "0.11" }, { "downloads": [ "https://github.com/hpc/mpifileutils/archive/v0.11.1.tar.gz" ], "version": "0.11.1" }, { "downloads": [ "https://github.com/hpc/mpifileutils/archive/v0.12.tar.gz" ], "version": "0.12" }, { "downloads": [ "https://github.com/hpc/mpifileutils/archive/v0.9.tar.gz" ], "version": "0.9" }, { "downloads": [ "https://github.com/hpc/mpifileutils/archive/v0.9.1.tar.gz" ], "version": "0.9.1" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/hpc/mpifileutils.git" 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"LGPL-3.0-or-later" ], "maintainers": [], "name": "mpir", "patches": [], "summary": "Multiple Precision Integers and Rationals.\n", "version": [ { "downloads": [ "https://github.com/wbhart/mpir/archive/mpir-2.6.0.tar.gz" ], "version": "2.6.0" }, { "downloads": [ "https://github.com/wbhart/mpir/archive/mpir-2.7.0.tar.gz" ], "version": "2.7.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/wbhart/mpir.git" } ], "version": "develop" } ] }, "mpitrampoline": { "alias": [ { "alias_for": "mpitrampoline", "name": "mpi" } ], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "ninja" ], "downloads": [ "https://github.com/eschnett/MPItrampoline/archive/vdevelop.tar.gz", "https://github.com/eschnett/MPItrampoline/archive/v5.5.0.tar.gz", "https://github.com/eschnett/MPItrampoline/archive/v5.4.1.tar.gz", "https://github.com/eschnett/MPItrampoline/archive/v5.3.1.tar.gz", 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"https://github.com/stschiff/msmc/archive/v1.1.0.tar.gz" ], "homepages": [ "https://github.com/stschiff/msmc" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "msmc", "patches": [], "summary": "This software implements MSMC, a method to infer population size and\ngene flow from multiple genome sequences\n", "version": [ { "downloads": [ "https://github.com/stschiff/msmc/archive/v1.1.0.tar.gz" ], "version": "1.1.0" } ] }, "msmc2": { "alias": [], "categories": [], "dependencies": [ "dmd", "gmake", "gsl" ], "downloads": [ "https://github.com/stschiff/msmc2/archive/v2.1.4.tar.gz", "https://github.com/stschiff/msmc2/archive/v2.1.2.tar.gz", "https://github.com/stschiff/msmc2/archive/v2.1.1.tar.gz", "https://github.com/stschiff/msmc2/archive/v2.0.2.tar.gz", "https://github.com/stschiff/msmc2/archive/v2.0.1.tar.gz", "https://github.com/stschiff/msmc2/archive/v2.0.0.tar.gz" ], "homepages": [ "https://github.com/stschiff/msmc2" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [ "robqiao" ], "name": "msmc2", "patches": [], "summary": " This program implements MSMC2, a method to infer population size\nhistory and population separation history from whole genome sequencing\ndata.\n", "version": [ { "downloads": [ "https://github.com/stschiff/msmc2/archive/v2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://github.com/stschiff/msmc2/archive/v2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://github.com/stschiff/msmc2/archive/v2.0.2.tar.gz" ], "version": "2.0.2" }, { "downloads": [ "https://github.com/stschiff/msmc2/archive/v2.1.1.tar.gz" ], "version": "2.1.1" }, { "downloads": [ "https://github.com/stschiff/msmc2/archive/v2.1.2.tar.gz" ], "version": "2.1.2" }, { "downloads": [ "https://github.com/stschiff/msmc2/archive/v2.1.4.tar.gz" ], "version": "2.1.4" } ] }, "msmpi": { "alias": [ { "alias_for": "msmpi", "name": "mpi" } ], "categories": [ "windows", "detectable" ], "dependencies": [ "c", "cxx", "fortran", "networkdirect", "perl", "win-wdk" ], "downloads": [ "https://github.com/microsoft/Microsoft-MPI/archive/refs/tags/v10.1.1.tar.gz", "https://github.com/microsoft/Microsoft-MPI/archive/refs/tags/v10.0.0.tar.gz", "https://github.com/microsoft/Microsoft-MPI.git" ], "homepages": [ "https://docs.microsoft.com/en-us/message-passing-interface/microsoft-mpi" ], "licenses": [], "maintainers": [], "name": "msmpi", "patches": [ "ifort_nd_compat.patch", "burn_cbt.patch", "no_mc.patch", "quote_source_tree_refs.patch" ], "summary": "MSMPI is a Windows port of MPICH provided by the Windows team\n", "version": [ { "downloads": [ "https://github.com/microsoft/Microsoft-MPI/archive/refs/tags/v10.0.0.tar.gz" ], "version": "10.0.0" }, { "downloads": [ "https://github.com/microsoft/Microsoft-MPI/archive/refs/tags/v10.1.1.tar.gz" ], "version": "10.1.1" } ] }, "msr-safe": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "gmake", "linux-external-modules" ], "downloads": [ 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It allows system administrators to give register-level\nread access and bit-level write access to trusted users in production\nenvironments. This access is useful where kernel drivers have not caught\nup with new processor features, or performance constraints requires\nbatch access across dozens or hundreds of registers.\n", "version": [ { "downloads": [ "https://github.com/rountree/msr-safe/archive/refs/heads/linux-6.9.9-cleanup.zip" ], "version": "0.0.0_linux6.9.9" }, { "downloads": [ "https://github.com/LLNL/msr-safe/archive/refs/tags/v1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://github.com/LLNL/msr-safe/archive/refs/tags/v1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://github.com/LLNL/msr-safe/archive/refs/tags/v1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://github.com/LLNL/msr-safe/archive/refs/tags/v1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://github.com/LLNL/msr-safe/archive/refs/tags/v1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://github.com/LLNL/msr-safe/archive/refs/tags/v1.5.0.tar.gz" ], "version": "1.5.0" }, { "downloads": [ "https://github.com/LLNL/msr-safe/archive/refs/tags/v1.6.0.tar.gz" ], "version": "1.6.0" }, { "downloads": [ "https://github.com/LLNL/msr-safe/archive/refs/tags/v1.7.0.tar.gz" ], "version": "1.7.0" } ] }, "mstk": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "exodusii", "gmake", "metis", "mpi", "ninja", "unittest-cpp", "zoltan" ], "downloads": [ "https://github.com/MeshToolkit/MSTK/archive/master.tar.gz", "https://github.com/MeshToolkit/MSTK/archive/3.3.6.tar.gz", "https://github.com/MeshToolkit/MSTK/archive/3.3.5.tar.gz", "https://github.com/MeshToolkit/MSTK/archive/3.3.4.tar.gz", "https://github.com/MeshToolkit/MSTK/archive/3.3.3.tar.gz", "https://github.com/MeshToolkit/MSTK/archive/3.3.2.tar.gz", "https://github.com/MeshToolkit/MSTK/archive/3.3.1.tar.gz", "https://github.com/MeshToolkit/MSTK/archive/3.3.0.tar.gz", "https://github.com/MeshToolkit/MSTK/archive/3.2.1.tar.gz", "https://github.com/MeshToolkit/MSTK/archive/3.2.0.tar.gz", "https://github.com/MeshToolkit/MSTK/archive/3.1.3.tar.gz", "https://github.com/MeshToolkit/MSTK/archive/3.1.2.tar.gz", "https://github.com/MeshToolkit/MSTK/archive/3.1.1.tar.gz", "https://github.com/MeshToolkit/MSTK/archive/3.1.0.tar.gz", "https://github.com/MeshToolkit/MSTK/archive/3.0.4.tar.gz", "https://github.com/MeshToolkit/MSTK/archive/3.0.3.tar.gz", "https://github.com/MeshToolkit/MSTK/archive/3.0.2.tar.gz", "https://github.com/MeshToolkit/MSTK/archive/3.0.1.tar.gz", "https://github.com/MeshToolkit/MSTK/archive/3.0.0.tar.gz", "https://github.com/MeshToolkit/MSTK" ], "homepages": [ "https://github.com/MeshToolkit/MSTK" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "julienloiseau", "raovgarimella" ], "name": "mstk", "patches": [], "summary": "MSTK is a mesh framework that allows users to represent, manipulate and\nquery unstructured 3D arbitrary topology meshes in a general manner\nwithout the need to code their own data structures. MSTK is a flexible\nframework in that it allows a variety of underlying representations for\nthe mesh while maintaining a common interface. It allows users to choose\nfrom different mesh representations either at initialization\n(implemented) or during the program execution (not yet implemented) so\nthat the optimal data structures are used for the particular algorithm.\nThe interaction of users and applications with MSTK is through a\nfunctional interface that acts as though the mesh always contains\nvertices, edges, faces and regions and maintains connectivity between\nall these entities.\n", "version": [ { "downloads": [ "https://github.com/MeshToolkit/MSTK/archive/3.0.0.tar.gz" ], "version": "3.0.0" }, { "downloads": [ "https://github.com/MeshToolkit/MSTK/archive/3.0.1.tar.gz" ], "version": "3.0.1" }, { "downloads": [ "https://github.com/MeshToolkit/MSTK/archive/3.0.2.tar.gz" ], "version": "3.0.2" }, { "downloads": [ "https://github.com/MeshToolkit/MSTK/archive/3.0.3.tar.gz" ], "version": "3.0.3" }, { "downloads": [ "https://github.com/MeshToolkit/MSTK/archive/3.0.4.tar.gz" ], "version": "3.0.4" }, { "downloads": [ "https://github.com/MeshToolkit/MSTK/archive/3.1.0.tar.gz" ], "version": "3.1.0" }, { "downloads": [ "https://github.com/MeshToolkit/MSTK/archive/3.1.1.tar.gz" ], "version": "3.1.1" }, { "downloads": [ "https://github.com/MeshToolkit/MSTK/archive/3.1.2.tar.gz" ], "version": "3.1.2" }, { "downloads": [ "https://github.com/MeshToolkit/MSTK/archive/3.1.3.tar.gz" ], "version": "3.1.3" }, { "downloads": [ "https://github.com/MeshToolkit/MSTK/archive/3.2.0.tar.gz" ], "version": "3.2.0" }, { "downloads": [ "https://github.com/MeshToolkit/MSTK/archive/3.2.1.tar.gz" ], "version": "3.2.1" }, { "downloads": [ "https://github.com/MeshToolkit/MSTK/archive/3.3.0.tar.gz" ], "version": "3.3.0" }, { "downloads": [ "https://github.com/MeshToolkit/MSTK/archive/3.3.1.tar.gz" ], "version": "3.3.1" }, { "downloads": [ "https://github.com/MeshToolkit/MSTK/archive/3.3.2.tar.gz" ], "version": "3.3.2" }, { "downloads": [ "https://github.com/MeshToolkit/MSTK/archive/3.3.3.tar.gz" ], "version": "3.3.3" }, { "downloads": [ "https://github.com/MeshToolkit/MSTK/archive/3.3.4.tar.gz" ], "version": "3.3.4" }, { "downloads": [ "https://github.com/MeshToolkit/MSTK/archive/3.3.5.tar.gz" ], "version": "3.3.5" }, { "downloads": [ "https://github.com/MeshToolkit/MSTK/archive/3.3.6.tar.gz" ], "version": "3.3.6" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/MeshToolkit/MSTK" } ], "version": "master" } ] }, "mstore": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "fortran", "gmake", "mctc-lib", "meson", "ninja", "pkgconfig" ], "downloads": [ "https://github.com/grimme-lab/mstore/releases/download/vmain/mstore-main.tar.xz", "https://github.com/grimme-lab/mstore/releases/download/v0.3.0/mstore-0.3.0.tar.xz", "https://github.com/grimme-lab/mstore/releases/download/v0.2.0/mstore-0.2.0.tar.xz", "https://github.com/grimme-lab/mstore.git" ], "homepages": [ "https://github.com/grimme-lab/mstore" ], "licenses": [ "LGPL-3.0-or-later" ], "maintainers": [ "awvwgk" ], "name": "mstore", "patches": [], "summary": " Molecular structure store for testing\n", "version": [ { "downloads": [ "https://github.com/grimme-lab/mstore/releases/download/v0.2.0/mstore-0.2.0.tar.xz" ], "version": "0.2.0" }, { "downloads": [ "https://github.com/grimme-lab/mstore/releases/download/v0.3.0/mstore-0.3.0.tar.xz" ], "version": "0.3.0" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/grimme-lab/mstore.git" } ], "version": "main" } ] }, "mt-metis": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/mt-metis-0.6.0.tar.gz" ], "homepages": [ "http://glaros.dtc.umn.edu/gkhome/views/metis" ], "licenses": [ "MIT" ], "maintainers": [], "name": "mt-metis", "patches": [ "non_x8664.patch" ], "summary": " mt-Metis is a multithreaded multilevel graph partitioning an ordering\ntool. It is based on the algorithms used in Metis and ParMetis\n", "version": [ { "downloads": [ "http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/mt-metis-0.6.0.tar.gz" ], "version": "0.6.0" } ] }, "mtn": { "alias": [], "categories": [], "dependencies": [ "c", "ffmpeg", "gmake", "libgd" ], "downloads": [ "https://gitlab.com/movie_thumbnailer/mtn/-/archive/v3.4.2/mtn-v3.4.2.tar.gz" ], "homepages": [ "https://gitlab.com/movie_thumbnailer/mtn" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [ "ledif" ], "name": "mtn", "patches": [], "summary": "Movie Thumbnailer is CLI thumbnail generator using FFmpeg.\n", "version": [ { "downloads": [ "https://gitlab.com/movie_thumbnailer/mtn/-/archive/v3.4.2/mtn-v3.4.2.tar.gz" ], "version": "3.4.2" } ] }, "mujoco": { "alias": [], "categories": [], "dependencies": [ "c", "cxx" ], "downloads": [], "homepages": [ "https://mujoco.org/" ], "licenses": [], "maintainers": [], "name": "mujoco", "patches": [], "summary": "MuJoCo is a physics engine that aims to facilitate research and\ndevelopment in robotics, biomechanics, graphics and animation, and other\nareas where fast and accurate simulation is needed.\n", "version": [ { "downloads": [ "https://mujoco.org/download/mujoco210-linux-x86_64.tar.gz" ], "version": "2.1.0" } ] }, "multicharge": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "fortran", "gmake", "lapack", "mctc-lib", "meson", "ninja", "pkgconfig" ], "downloads": [ "https://github.com/grimme-lab/multicharge/releases/download/vmain/multicharge-main-source.tar.xz", "https://github.com/grimme-lab/multicharge/releases/download/v0.4.0/multicharge-0.4.0-source.tar.xz", "https://github.com/grimme-lab/multicharge/releases/download/v0.3.1/multicharge-0.3.1-source.tar.xz", "https://github.com/grimme-lab/multicharge/releases/download/v0.3.0/multicharge-0.3.0-source.tar.xz", "https://github.com/grimme-lab/multicharge.git" ], "homepages": [ "https://github.com/grimme-lab/multicharge" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "RMeli", "awvwgk" ], "name": "multicharge", "patches": [], "summary": "Electronegativity equilibration model for atomic partial charges\n", "version": [ { "downloads": [ "https://github.com/grimme-lab/multicharge/releases/download/v0.3.0/multicharge-0.3.0-source.tar.xz" ], "version": "0.3.0" }, { "downloads": [ "https://github.com/grimme-lab/multicharge/releases/download/v0.3.1/multicharge-0.3.1-source.tar.xz" ], "version": "0.3.1" }, { "downloads": [ "https://github.com/grimme-lab/multicharge/releases/download/v0.4.0/multicharge-0.4.0-source.tar.xz" ], "version": "0.4.0" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/grimme-lab/multicharge.git" } ], "version": "main" } ] }, "multitail": { "alias": [], "categories": [], "dependencies": [ "gmake", "ncurses" ], "downloads": [ "https://www.vanheusden.com/multitail/multitail-6.4.2.tgz" ], "homepages": [ "https://www.vanheusden.com/multitail/index.php" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "multitail", "patches": [], "summary": "MultiTail allows you to monitor logfiles and command output in multiple\nwindows in a terminal, colorize, filter and merge.\n", "version": [ { "downloads": [ "https://www.vanheusden.com/multitail/multitail-6.4.2.tgz" ], "version": "6.4.2" } ] }, "multitime": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://tratt.net/laurie/src/multitime/releases/multitime-1.4.tar.gz" ], "homepages": [ "https://tratt.net/laurie/src/multitime/" ], "licenses": [ "MIT" ], "maintainers": [], "name": "multitime", "patches": [], "summary": "multitime is, in essence, a simple extension to time which runs a\ncommand multiple times and prints the timing means, standard deviations,\nmins, medians, and maxes having done so. This can give a much better\nunderstanding of the command's performance.\n", "version": [ { "downloads": [ "https://tratt.net/laurie/src/multitime/releases/multitime-1.4.tar.gz" ], "version": "1.4" } ] }, "multiverso": { "alias": [], "categories": [], "dependencies": [ "boost", "cmake", "cxx", "gmake", "mpi", "ninja" ], "downloads": [ "https://github.com/Microsoft/Multiverso/archive/vmaster.tar.gz", "https://github.com/Microsoft/Multiverso/archive/v143187.tar.gz", "https://github.com/Microsoft/Multiverso/archive/v0.2.tar.gz", "https://github.com/Microsoft/Multiverso.git" ], "homepages": [ "https://github.com/Microsoft/Multiverso" ], "licenses": [ "MIT" ], "maintainers": [], "name": "multiverso", "patches": [ "cmake-143187.patch when @143187" ], "summary": "Multiverso is a parameter server based framework for training machine\nlearning models on big data with numbers of machines.\n", "version": [ { "downloads": [ "https://github.com/Microsoft/Multiverso/archive/v0.2.tar.gz" ], "version": "0.2" }, { "repositories": [ { "commit": "143187575d1cfa410100037b8aea2e767e0af637", "type": "git", "url": "https://github.com/Microsoft/Multiverso.git" } ], "version": "143187" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/Microsoft/Multiverso.git" } ], "version": "master" } ] }, "mumax": { "alias": [], "categories": [], "dependencies": [ "c", "cuda", "gmake", "gnuplot", "go" ], "downloads": [ "https://github.com/mumax/3/archive/v3.10.tar.gz", "https://github.com/mumax/3/archive/3.10beta.tar.gz" ], "homepages": [ "https://mumax.github.io" ], "licenses": [ "CC-BY-3.0" ], "maintainers": [], "name": "mumax", "patches": [ "https://github.com/mumax/3/commit/2cf5c9a6985c9eb16a124c6bd96aed75b4a30c24.patch?full_index=1 when @3.10beta" ], "summary": "GPU accelerated micromagnetic simulator.\n", "version": [ { "downloads": [ "https://github.com/mumax/3/archive/v3.10.tar.gz" ], "version": "3.10" }, { "downloads": [ "https://github.com/mumax/3/archive/3.10beta.tar.gz" ], "version": "3.10beta" } ] }, "mummer": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gnuplot", "perl" ], "downloads": [ "https://sourceforge.net/projects/mummer/files/mummer/3.23/MUMmer3.23.tar.gz/download" ], "homepages": [ "https://mummer.sourceforge.net/" ], "licenses": [ "Artistic-1.0" ], "maintainers": [], "name": "mummer", "patches": [ "Makefile.patch", "scripts-Makefile.patch" ], "summary": "MUMmer is a system for rapidly aligning entire genomes.\n", "version": [ { "downloads": [ "https://sourceforge.net/projects/mummer/files/mummer/3.23/MUMmer3.23.tar.gz/download" ], "version": "3.23" } ] }, "mummer4": { "alias": [], "categories": [], "dependencies": [ "awk", "c", "cxx", "gmake", "gnuconfig", "perl", "sed" ], "downloads": [ "https://github.com/mummer4/mummer/releases/download/v4.0.1/mummer-4.0.1.tar.gz", "https://github.com/mummer4/mummer/releases/download/v4.0.0rc1/mummer-4.0.0rc1.tar.gz", "https://github.com/mummer4/mummer/releases/download/v4.0.0beta2/mummer-4.0.0beta2.tar.gz" ], "homepages": [ "https://github.com/mummer4/mummer" ], "licenses": [], "maintainers": [], "name": "mummer4", "patches": [ "48bit_index.patch when %gcc@13:" ], "summary": "MUMmer is a versatil alignment tool for DNA and protein sequences.\n", "version": [ { "downloads": [ "https://github.com/mummer4/mummer/releases/download/v4.0.0beta2/mummer-4.0.0beta2.tar.gz" ], "version": "4.0.0beta2" }, { "downloads": [ "https://github.com/mummer4/mummer/releases/download/v4.0.0rc1/mummer-4.0.0rc1.tar.gz" ], "version": "4.0.0rc1" }, { "downloads": [ "https://github.com/mummer4/mummer/releases/download/v4.0.1/mummer-4.0.1.tar.gz" ], "version": "4.0.1" } ] }, "mumps": { "alias": [], "categories": [], "dependencies": [ "blas", "c", "fortran", "gmake", "lapack", "metis", "mpi", "parmetis", "scalapack", "scotch" ], "downloads": [ "https://mumps-solver.org/MUMPS_5.8.1.tar.gz", "https://mumps-solver.org/MUMPS_5.8.0.tar.gz", "https://mumps-solver.org/MUMPS_5.7.3.tar.gz", "https://mumps-solver.org/MUMPS_5.7.2.tar.gz", "https://mumps-solver.org/MUMPS_5.6.2.tar.gz", "https://mumps-solver.org/MUMPS_5.6.1.tar.gz", "https://mumps-solver.org/MUMPS_5.6.0.tar.gz", "https://mumps-solver.org/MUMPS_5.5.1.tar.gz", "https://mumps-solver.org/MUMPS_5.5.0.tar.gz", "https://mumps-solver.org/MUMPS_5.4.1.tar.gz", "https://mumps-solver.org/MUMPS_5.4.0.tar.gz", "https://mumps-solver.org/MUMPS_5.3.5.tar.gz", "https://mumps-solver.org/MUMPS_5.3.3.tar.gz", "https://mumps-solver.org/MUMPS_5.2.0.tar.gz", "https://mumps-solver.org/MUMPS_5.1.2.tar.gz", "https://mumps-solver.org/MUMPS_5.1.1.tar.gz", "https://mumps-solver.org/MUMPS_5.0.2.tar.gz", "https://mumps-solver.org/MUMPS_5.0.1.tar.gz" ], "homepages": [ "https://mumps-solver.org/index.php" ], "licenses": [], "maintainers": [ "jcortial-safran" ], "name": "mumps", "patches": [ "examples.patch when @5.1.1 %clang ^spectrum-mpi", "gfortran8.patch when @5.1.2", "mumps.src-makefile.5.2.patch when @5.2+shared", "mumps.src-makefile.5.3.patch when @5.3:5.4+shared", "mumps.src-makefile.5.5.patch when @5.5:5.7+shared", "mumps.src-makefile.5.8.patch when @5.8:+shared" ], "summary": "MUMPS: a MUltifrontal Massively Parallel sparse direct Solver\n", "version": [ { "downloads": [ "https://mumps-solver.org/MUMPS_5.0.1.tar.gz" ], "version": "5.0.1" }, { "downloads": [ "https://mumps-solver.org/MUMPS_5.0.2.tar.gz" ], "version": "5.0.2" }, { "downloads": [ "https://mumps-solver.org/MUMPS_5.1.1.tar.gz" ], "version": "5.1.1" }, { "downloads": [ "https://mumps-solver.org/MUMPS_5.1.2.tar.gz" ], "version": "5.1.2" }, { "downloads": [ "https://mumps-solver.org/MUMPS_5.2.0.tar.gz" ], "version": "5.2.0" }, { "downloads": [ "https://mumps-solver.org/MUMPS_5.3.3.tar.gz" ], "version": "5.3.3" }, { "downloads": [ "https://mumps-solver.org/MUMPS_5.3.5.tar.gz" ], "version": "5.3.5" }, { "downloads": [ "https://mumps-solver.org/MUMPS_5.4.0.tar.gz" ], "version": "5.4.0" }, { "downloads": [ "https://mumps-solver.org/MUMPS_5.4.1.tar.gz" ], "version": "5.4.1" }, { "downloads": [ "https://mumps-solver.org/MUMPS_5.5.0.tar.gz" ], "version": "5.5.0" }, { "downloads": [ "https://mumps-solver.org/MUMPS_5.5.1.tar.gz" ], "version": "5.5.1" }, { "downloads": [ "https://mumps-solver.org/MUMPS_5.6.0.tar.gz" ], "version": "5.6.0" }, { "downloads": [ "https://mumps-solver.org/MUMPS_5.6.1.tar.gz" ], "version": "5.6.1" }, { "downloads": [ "https://mumps-solver.org/MUMPS_5.6.2.tar.gz" ], "version": "5.6.2" }, { "downloads": [ "https://mumps-solver.org/MUMPS_5.7.2.tar.gz" ], "version": "5.7.2" }, { "downloads": [ "https://mumps-solver.org/MUMPS_5.7.3.tar.gz" ], "version": "5.7.3" }, { "downloads": [ "https://mumps-solver.org/MUMPS_5.8.0.tar.gz" ], "version": "5.8.0" }, { "downloads": [ "https://mumps-solver.org/MUMPS_5.8.1.tar.gz" ], "version": "5.8.1" } ] }, "munge": { "alias": [], "categories": [], "dependencies": [ "bzip2", "c", "gmake", "gnuconfig", "libgcrypt", "openssl" ], "downloads": [ "https://github.com/dun/munge/releases/download/munge-0.5.15/munge-0.5.15.tar.xz", "https://github.com/dun/munge/releases/download/munge-0.5.14/munge-0.5.14.tar.xz", "https://github.com/dun/munge/releases/download/munge-0.5.13/munge-0.5.13.tar.xz", "https://github.com/dun/munge/releases/download/munge-0.5.12/munge-0.5.12.tar.xz", "https://github.com/dun/munge/releases/download/munge-0.5.11/munge-0.5.11.tar.bz2" ], "homepages": [ "https://dun.github.io/munge/" ], "licenses": [ "LGPL-3.0-only" ], "maintainers": [ "ChristianTackeGSI" ], "name": "munge", "patches": [], "summary": "MUNGE Uid 'N' Gid Emporium\n", "version": [ { "downloads": [ "https://github.com/dun/munge/releases/download/munge-0.5.11/munge-0.5.11.tar.bz2" ], "version": "0.5.11" }, { "downloads": [ "https://github.com/dun/munge/releases/download/munge-0.5.12/munge-0.5.12.tar.xz" ], "version": "0.5.12" }, { "downloads": [ "https://github.com/dun/munge/releases/download/munge-0.5.13/munge-0.5.13.tar.xz" ], "version": "0.5.13" }, { "downloads": [ "https://github.com/dun/munge/releases/download/munge-0.5.14/munge-0.5.14.tar.xz" ], "version": "0.5.14" }, { "downloads": [ "https://github.com/dun/munge/releases/download/munge-0.5.15/munge-0.5.15.tar.xz" ], "version": "0.5.15" } ] }, "muparser": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "gnuconfig", "ninja" ], "downloads": [ "https://github.com/beltoforion/muparser/archive/v2.3.4.tar.gz", "https://github.com/beltoforion/muparser/archive/v2.2.6.1.tar.gz", "https://github.com/beltoforion/muparser/archive/v2.2.5.tar.gz" ], "homepages": [ "https://beltoforion.de/en/muparser/" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "muparser", "patches": [ "auto_ptr.patch when @2.2.5" ], "summary": "C++ math expression parser library.\n", "version": [ { "downloads": [ "https://github.com/beltoforion/muparser/archive/v2.2.5.tar.gz" ], "version": "2.2.5" }, { "downloads": [ "https://github.com/beltoforion/muparser/archive/v2.2.6.1.tar.gz" ], "version": "2.2.6.1" }, { "downloads": [ "https://github.com/beltoforion/muparser/archive/v2.3.4.tar.gz" ], "version": "2.3.4" } ] }, "muparserx": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/beltoforion/muparserx/archive/refs/tags/v4.0.12.tar.gz", "https://github.com/beltoforion/muparserx/archive/refs/tags/v4.0.8.tar.gz" ], "homepages": [ "https://beltoforion.de/en/muparserx/" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "muparserx", "patches": [], "summary": "A C++ Library for Parsing Expressions with Strings, Complex Numbers,\nVectors, Matrices and more.\n", "version": [ { "downloads": [ "https://github.com/beltoforion/muparserx/archive/refs/tags/v4.0.12.tar.gz" ], "version": "4.0.12" }, { "downloads": [ "https://github.com/beltoforion/muparserx/archive/refs/tags/v4.0.8.tar.gz" ], "version": "4.0.8" } ] }, "muscle": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake" ], "downloads": [], "homepages": [ "https://drive5.com/muscle/" ], "licenses": [], "maintainers": [], "name": "muscle", "patches": [], "summary": "MUSCLE is one of the best-performing multiple alignment programs\naccording to published benchmark tests, with accuracy and speed that are\nconsistently better than CLUSTALW.\n", "version": [ { "downloads": [ "https://drive5.com/muscle/muscle_src_3.8.1551.tar.gz" ], "version": "3.8.1551" }, { "downloads": [ "https://drive5.com/muscle/downloads3.8.31/muscle3.8.31_src.tar.gz" ], "version": "3.8.31" } ] }, "muscle5": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "sed" ], "downloads": [ "https://github.com/rcedgar/muscle/archive/refs/tags/5.1.0.tar.gz" ], "homepages": [ "https://drive5.com/muscle5/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [ "snehring" ], "name": "muscle5", "patches": [], "summary": "MUSCLE is widely-used software for making multiple alignments of\nbiological sequences.\n", "version": [ { "downloads": [ "https://github.com/rcedgar/muscle/archive/refs/tags/5.1.0.tar.gz" ], "version": "5.1.0" } ] }, "muse": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "zlib-api" ], "downloads": [ "https://github.com/danielfan/MuSE/archive/v1.0-rc.tar.gz" ], "homepages": [ "https://bioinformatics.mdanderson.org/main/MuSE" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "muse", "patches": [], "summary": "Somatic point mutation caller.\n", "version": [ { "downloads": [ "https://github.com/danielfan/MuSE/archive/v1.0-rc.tar.gz" ], "version": "1.0-rc" } ] }, "music": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "fftw", "fortran", "gmake", "gsl", "hdf5", "ninja" ], "downloads": [ "https://bitbucket.org/ohahn/music.git" ], "homepages": [ "https://www-n.oca.eu/ohahn/MUSIC/" ], "licenses": [], "maintainers": [ "charmoniumQ" ], "name": "music", "patches": [], "summary": "MUSIC (Multi-Scale Initial Conditions for Cosmological Simulations).\nIntroduced in [Hahn and Abel][1]. [1]: https://arxiv.org/abs/1103.6031\n", "version": [ { "repositories": [ { "commit": "6747c54f3b73ec36719c265fd96362849a83cb45", "type": "git", "url": "https://bitbucket.org/ohahn/music.git" } ], "version": "2021-12-01" } ] }, "musica": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "fortran", "gmake", "mpi", "netcdf-fortran", "ninja" ], "downloads": [ "https://github.com/NCAR/musica/archive/refs/tags/v0.13.0.tar.gz", "https://github.com/NCAR/musica/archive/refs/tags/v0.12.0.tar.gz", "https://github.com/NCAR/musica/archive/refs/tags/v0.10.1.tar.gz", "https://github.com/NCAR/musica.git" ], "homepages": [ "https://github.com/NCAR/musica" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "boulderdaze", "kshores" ], "name": "musica", "patches": [], "summary": "MUSICA - The multi-scale interface for chemistry and aerosols MUSICA is\na software package which exposes a flexible API for including aerosol\nand gas-phase chemistry in many contexts across languages and platforms.\nIt is designed to be used in conjunction with other software packages,\nsuch as climate models, to provide a comprehensive framework for\nsimulating atmospheric chemistry processes.\n", "version": [ { "downloads": [ "https://github.com/NCAR/musica/archive/refs/tags/v0.10.1.tar.gz" ], "version": "0.10.1" }, { "downloads": [ "https://github.com/NCAR/musica/archive/refs/tags/v0.12.0.tar.gz" ], "version": "0.12.0" }, { "downloads": [ "https://github.com/NCAR/musica/archive/refs/tags/v0.13.0.tar.gz" ], "version": "0.13.0" } ] }, "musl": { "alias": [ { "alias_for": "musl", "name": "iconv" }, { "alias_for": "musl", "name": "libc" } ], "categories": [ "runtime" ], "dependencies": [ "c", "gmake" ], "downloads": [ "https://www.musl-libc.org/releases/musl-1.2.4.tar.gz", "https://www.musl-libc.org/releases/musl-1.2.3.tar.gz", "https://www.musl-libc.org/releases/musl-1.2.2.tar.gz", "https://www.musl-libc.org/releases/musl-1.2.1.tar.gz", "https://www.musl-libc.org/releases/musl-1.2.0.tar.gz", "https://www.musl-libc.org/releases/musl-1.1.24.tar.gz", "https://www.musl-libc.org/releases/musl-1.1.23.tar.gz", "https://www.musl-libc.org/releases/musl-1.1.22.tar.gz", "https://www.musl-libc.org/releases/musl-1.1.21.tar.gz", "https://www.musl-libc.org/releases/musl-1.1.20.tar.gz" ], "homepages": [ "https://www.musl-libc.org" ], "licenses": [ "MIT" ], "maintainers": [], "name": "musl", "patches": [], "summary": "Musl is a libc, an implementation of the standard library functionality\ndescribed in the ISO C and POSIX standards, plus common extensions,\nintended for use on Linux-based systems. Whereas the kernel (Linux)\ngoverns access to hardware, memory, filesystems, and the privileges for\naccessing these resources, the C library is responsible for providing\nthe actual C function interfaces userspace applications see, and for\nconstructing higher-level buffered stdio, memory allocation management,\nthread creation and synchronization operations, and so on using the\nlower-level interfaces the kernel provides, as well as for implementing\npure library routines of the C language like strstr, snprintf, strtol,\nexp, sqrt, etc. Musl is a new general-purpose implementation of the C\nlibrary. It is lightweight, fast, simple, free, and aims to be correct\nin the sense of standards-conformance and safety.\n", "version": [ { "downloads": [ "https://www.musl-libc.org/releases/musl-1.1.20.tar.gz" ], "version": "1.1.20" }, { "downloads": [ "https://www.musl-libc.org/releases/musl-1.1.21.tar.gz" ], "version": "1.1.21" }, { "downloads": [ "https://www.musl-libc.org/releases/musl-1.1.22.tar.gz" ], "version": "1.1.22" }, { "downloads": [ "https://www.musl-libc.org/releases/musl-1.1.23.tar.gz" ], "version": "1.1.23" }, { "downloads": [ "https://www.musl-libc.org/releases/musl-1.1.24.tar.gz" ], "version": "1.1.24" }, { "downloads": [ "https://www.musl-libc.org/releases/musl-1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://www.musl-libc.org/releases/musl-1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://www.musl-libc.org/releases/musl-1.2.2.tar.gz" ], "version": "1.2.2" }, { "downloads": [ "https://www.musl-libc.org/releases/musl-1.2.3.tar.gz" ], "version": "1.2.3" }, { "downloads": [ "https://www.musl-libc.org/releases/musl-1.2.4.tar.gz" ], "version": "1.2.4" } ] }, "must": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "dyninst", "fortran", "gmake", "graphviz", "libxml2", "llvm", "mpi", "ninja", "python" ], "downloads": [ "https://hpc.rwth-aachen.de/must/files/MUST-v1.9.0.tar.gz", "https://hpc.rwth-aachen.de/must/files/MUST-v1.8.0.tar.gz", "https://hpc.rwth-aachen.de/must/files/MUST-v1.7.2.tar.gz" ], "homepages": [ "https://www.i12.rwth-aachen.de/go/id/nrbe" ], "licenses": [], "maintainers": [ "dmont", "jgalarowicz" ], "name": "must", "patches": [], "summary": "MUST detects usage errors of the Message Passing Interface (MPI) and\nreports them to the user. As MPI calls are complex and usage errors\ncommon, this functionality is extremely helpful for application\ndevelopers that want to develop correct MPI applications. This includes\nerrors that already manifest: segmentation faults or incorrect results\nas well as many errors that are not visible to the application developer\nor do not manifest on a certain system or MPI implementation.\n", "version": [ { "downloads": [ "https://hpc.rwth-aachen.de/must/files/MUST-v1.7.2.tar.gz" ], "version": "1.7.2" }, { "downloads": [ "https://hpc.rwth-aachen.de/must/files/MUST-v1.8.0.tar.gz" ], "version": "1.8.0" }, { "downloads": [ "https://hpc.rwth-aachen.de/must/files/MUST-v1.9.0.tar.gz" ], "version": "1.9.0" } ] }, "muster": { "alias": [], "categories": [], "dependencies": [ "boost", "cmake", "cxx", "gmake", "mpi", "ninja" ], "downloads": [ "https://github.com/llnl/muster/archive/v1.0.1.tar.gz", "https://github.com/llnl/muster/archive/v1.0.tar.gz" ], "homepages": [ "https://github.com/llnl/muster" ], "licenses": [], "maintainers": [], "name": "muster", "patches": [], "summary": "The Muster library provides implementations of sequential and parallel\nK-Medoids clustering algorithms. It is intended as a general framework\nfor parallel cluster analysis, particularly for performance data\nanalysis on systems with very large numbers of processes.\n", "version": [ { "downloads": [ "https://github.com/llnl/muster/archive/v1.0.tar.gz" ], "version": "1.0" }, { "downloads": [ "https://github.com/llnl/muster/archive/v1.0.1.tar.gz" ], "version": "1.0.1" } ] }, "mutationpp": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "ninja" ], "downloads": [ "https://github.com/mutationpp/Mutationpp/archive/v1.0.5.tar.gz", "https://github.com/mutationpp/Mutationpp/archive/v1.0.0.tar.gz", "https://github.com/mutationpp/Mutationpp/archive/v0.3.1.tar.gz" ], "homepages": [ "https://github.com/mutationpp/Mutationpp" ], "licenses": [ "LGPL-3.0-only" ], "maintainers": [], "name": "mutationpp", "patches": [], "summary": "Mutation++ is an open-source library originally developed at the von\nKarman Institute for Fluid Dynamics, designed to couple with\nconventional computational fluid dynamics codes to provide\nthermodynamic, transport, chemistry, and energy transfer properties\nassociated with subsonic to hypersonic flows.\n", "version": [ { "downloads": [ "https://github.com/mutationpp/Mutationpp/archive/v0.3.1.tar.gz" ], "version": "0.3.1" }, { "downloads": [ "https://github.com/mutationpp/Mutationpp/archive/v1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://github.com/mutationpp/Mutationpp/archive/v1.0.5.tar.gz" ], "version": "1.0.5" } ] }, "mvapich": { "alias": [ { "alias_for": "mvapich", "name": "mpi" }, { "alias_for": "mvapich", "name": "mpi" } ], "categories": [ "detectable" ], "dependencies": [ "bison", "c", "cxx", "findutils", "fortran", "gmake", "gnuconfig", "libfabric", "libpciaccess", "libxml2", "pkgconfig", "slurm", "ucx", "zlib-api" ], "downloads": [ "https://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich-4.1.tar.gz", "https://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich-4.0.tar.gz" ], "homepages": [ "https://mvapich.cse.ohio-state.edu/userguide/userguide_spack/" ], "licenses": [ "Unlicense" ], "maintainers": [ "MatthewLieber", "harisubramoni", "natshineman" ], "name": "mvapich", "patches": [], "summary": "Mvapich is a High-Performance MPI Library for clusters with diverse\nnetworks (InfiniBand, Omni-Path, Ethernet/iWARP, and RoCE) and computing\nplatforms (x86 (Intel and AMD), ARM and OpenPOWER)\n", "version": [ { "downloads": [ "https://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich-4.0.tar.gz" ], "version": "4.0" }, { "downloads": [ "https://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich-4.1.tar.gz" ], "version": "4.1" } ] }, "mvapich-plus": { "alias": [ { "alias_for": "mvapich-plus", "name": "mpi" }, { "alias_for": "mvapich-plus", "name": "mpi" } ], "categories": [ "detectable" ], "dependencies": [ "bison", "c", "cuda", "cxx", "findutils", "fortran", "gmake", "gnuconfig", "hip", "hsa-rocr-dev", "libfabric", "libpciaccess", "libxml2", "llvm-amdgpu", "pkgconfig", "rccl", "slurm", "ucx", "zlib-api" ], "downloads": [ "https://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich-4.1.tar.gz", "https://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich-4.0.tar.gz" ], "homepages": [ "https://mvapich.cse.ohio-state.edu/userguide/userguide_spack/" ], "licenses": [ "Unlicense" ], "maintainers": [ "MatthewLieber", "harisubramoni", "natshineman" ], "name": "mvapich-plus", "patches": [], "summary": "Mvapich is a High-Performance MPI Library for clusters with diverse\nnetworks (InfiniBand, Omni-Path, Ethernet/iWARP, and RoCE) and computing\nplatforms (x86 (Intel and AMD), ARM and OpenPOWER)\n", "version": [ { "downloads": [ "https://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich-4.0.tar.gz" ], "version": "4.0" }, { "downloads": [ "https://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich-4.1.tar.gz" ], "version": "4.1" } ] }, 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Ncdu aims to be fast, simple and easy to use, and\nshould be able to run in any minimal POSIX-like environment with ncurses\ninstalled.\n", "version": [ { "downloads": [ "https://dev.yorhel.nl/download/ncdu-1.10.tar.gz" ], "version": "1.10" }, { "downloads": [ "https://dev.yorhel.nl/download/ncdu-1.11.tar.gz" ], "version": "1.11" }, { "downloads": [ "https://dev.yorhel.nl/download/ncdu-1.12.tar.gz" ], "version": "1.12" }, { "downloads": [ "https://dev.yorhel.nl/download/ncdu-1.13.tar.gz" ], "version": "1.13" }, { "downloads": [ "https://dev.yorhel.nl/download/ncdu-1.14.2.tar.gz" ], "version": "1.14.2" }, { "downloads": [ "https://dev.yorhel.nl/download/ncdu-1.15.1.tar.gz" ], "version": "1.15.1" }, { "downloads": [ "https://dev.yorhel.nl/download/ncdu-1.16.tar.gz" ], "version": "1.16" }, { "downloads": [ "https://dev.yorhel.nl/download/ncdu-1.17.tar.gz" ], "version": "1.17" }, { "downloads": [ "https://dev.yorhel.nl/download/ncdu-1.18.1.tar.gz" ], "version": "1.18.1" }, { "downloads": [ "https://dev.yorhel.nl/download/ncdu-1.19.tar.gz" ], "version": "1.19" }, { "downloads": [ "https://dev.yorhel.nl/download/ncdu-1.22.tar.gz" ], "version": "1.22" }, { "downloads": [ "https://dev.yorhel.nl/download/ncdu-1.7.tar.gz" ], "version": "1.7" }, { "downloads": [ "https://dev.yorhel.nl/download/ncdu-1.8.tar.gz" ], "version": "1.8" }, { "downloads": [ "https://dev.yorhel.nl/download/ncdu-1.9.tar.gz" ], "version": "1.9" } ] }, "ncftp": { "alias": [], "categories": [], "dependencies": [ "gmake", "gnuconfig", "ncurses" ], "downloads": [ "ftp://ftp.ncftp.com/ncftp/ncftp-3.2.6-src.tar.gz" ], "homepages": [ "https://www.ncftp.com/" ], "licenses": [ "ClArtistic" ], "maintainers": [], "name": "ncftp", "patches": [], "summary": "NcFTP Client is a set of application programs implementing the File\nTransfer Protocol.\n", "version": [ { "downloads": [ "https://www.ncftp.com/public_ftp/ncftp/older_versions/ncftp-3.2.6-src.tar.gz" ], "version": "3.2.6" }, { "downloads": [ "https://www.ncftp.com/public_ftp/ncftp/ncftp-3.2.7-src.tar.gz" ], "version": "3.2.7" } ] }, "ncio": { "alias": [], "categories": [], "dependencies": [ "cmake", "fortran", "gmake", "mpi", "netcdf-fortran", "ninja" ], "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-ncio/archive/refs/tags/vdevelop.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-ncio/archive/refs/tags/v1.1.2.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-ncio/archive/refs/tags/v1.1.1.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-ncio/archive/refs/tags/v1.1.0.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-ncio/archive/refs/tags/v1.0.0.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-ncio" ], "homepages": [ "https://github.com/NOAA-EMC/NCEPLIBS-ncio" ], "licenses": [], "maintainers": [ "AlexanderRichert-NOAA", "Hang-Lei-NOAA", "edwardhartnett" ], "name": "ncio", "patches": [], "summary": "This is a library used by NCEP GSI system to read the GFS forecast files\nfor use in data assimilation. 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Supports NetCDF 3/4, GRIB 1/2, HDF 4/5, HDF-\nEOD 2/5, shapefile, ASCII, binary. Numerous analysis functions are\nbuilt-in.\n", "version": [ { "downloads": [ "https://github.com/NCAR/ncl/archive/6.4.0.tar.gz" ], "version": "6.4.0" }, { "downloads": [ "https://github.com/NCAR/ncl/archive/6.5.0.tar.gz" ], "version": "6.5.0" }, { "downloads": [ "https://github.com/NCAR/ncl/archive/6.6.2.tar.gz" ], "version": "6.6.2" } ] }, "nco": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "antlr", "bison", "c", "cxx", "flex", "gmake", "gnuconfig", "gsl", "netcdf-c", "texinfo", "udunits" ], "downloads": [ "https://github.com/nco/nco/archive/5.3.4.tar.gz", "https://github.com/nco/nco/archive/5.3.3.tar.gz", "https://github.com/nco/nco/archive/5.3.2.tar.gz", "https://github.com/nco/nco/archive/5.3.1.tar.gz", "https://github.com/nco/nco/archive/5.3.0.tar.gz", "https://github.com/nco/nco/archive/5.2.9.tar.gz", "https://github.com/nco/nco/archive/5.2.8.tar.gz", "https://github.com/nco/nco/archive/5.2.7.tar.gz", "https://github.com/nco/nco/archive/5.2.6.tar.gz", 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"downloads": [ "https://github.com/nco/nco/archive/5.1.8.tar.gz" ], "version": "5.1.8" }, { "downloads": [ "https://github.com/nco/nco/archive/5.1.9.tar.gz" ], "version": "5.1.9" }, { "downloads": [ "https://github.com/nco/nco/archive/5.2.1.tar.gz" ], "version": "5.2.1" }, { "downloads": [ "https://github.com/nco/nco/archive/5.2.2.tar.gz" ], "version": "5.2.2" }, { "downloads": [ "https://github.com/nco/nco/archive/5.2.3.tar.gz" ], "version": "5.2.3" }, { "downloads": [ "https://github.com/nco/nco/archive/5.2.4.tar.gz" ], "version": "5.2.4" }, { "downloads": [ "https://github.com/nco/nco/archive/5.2.6.tar.gz" ], "version": "5.2.6" }, { "downloads": [ "https://github.com/nco/nco/archive/5.2.7.tar.gz" ], "version": "5.2.7" }, { "downloads": [ "https://github.com/nco/nco/archive/5.2.8.tar.gz" ], "version": "5.2.8" }, { "downloads": [ "https://github.com/nco/nco/archive/5.2.9.tar.gz" ], "version": "5.2.9" }, { "downloads": [ "https://github.com/nco/nco/archive/5.3.0.tar.gz" ], "version": 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It uses terminfo format, supports\npads and color and multiple highlights and forms characters and\nfunction-key mapping, and has all the other SYSV-curses enhancements\nover BSD curses.\n", "version": [ { "downloads": [ "https://ftpmirror.gnu.org/ncurses/ncurses-5.9.tar.gz" ], "version": "5.9" }, { "downloads": [ "https://ftpmirror.gnu.org/ncurses/ncurses-6.0.tar.gz" ], "version": "6.0" }, { "downloads": [ "https://ftpmirror.gnu.org/ncurses/ncurses-6.1.tar.gz" ], "version": "6.1" }, { "downloads": [ "https://ftpmirror.gnu.org/ncurses/ncurses-6.2.tar.gz" ], "version": "6.2" }, { "downloads": [ "https://ftpmirror.gnu.org/ncurses/ncurses-6.3.tar.gz" ], "version": "6.3" }, { "downloads": [ "https://ftpmirror.gnu.org/ncurses/ncurses-6.4.tar.gz" ], "version": "6.4" }, { "downloads": [ "https://ftpmirror.gnu.org/ncurses/ncurses-6.5.tar.gz" ], "version": "6.5" }, { "downloads": [ "https://invisible-mirror.net/archives/ncurses/current/ncurses-6.5-20250705.tgz" ], "version": "6.5-20250705" } ] }, "ncview": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libpng", "libxaw", "netcdf-c", "udunits" ], "downloads": [], "homepages": [ "https://cirrus.ucsd.edu/ncview/" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "ncview", "patches": [], "summary": "Simple viewer for NetCDF files.\n", "version": [ { "downloads": [ "ftp://cirrus.ucsd.edu/pub/ncview/ncview-2.1.7.tar.gz" ], "version": "2.1.7" }, { "downloads": [ "ftp://cirrus.ucsd.edu/pub/ncview/ncview-2.1.7.tar.gz" ], "version": "2.1.8" }, { "downloads": [ "https://cirrus.ucsd.edu/~pierce/ncview/ncview-2.1.9.tar.gz" ], "version": "2.1.9" } ] }, "ncvis": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "gmake", "netcdf-c", "ninja", "wxwidgets" ], "downloads": [ "https://github.com/SEATStandards/ncvis/archive/refs/tags/2022.08.28.tar.gz", "https://github.com/SEATStandards/ncvis.git" ], "homepages": [ "https://github.com/SEATStandards/ncvis" ], "licenses": [], "maintainers": [ "vanderwb" ], "name": "ncvis", "patches": [], "summary": "A NetCDF file viewer. ncvis is inspired by David Pierce's most excellent\nncview utility.\n", "version": [ { "downloads": [ "https://github.com/SEATStandards/ncvis/archive/refs/tags/2022.08.28.tar.gz" ], "version": "2022.08.28" } ] }, "ndiff": { "alias": [], "categories": [], "dependencies": [ "c", "gmake" ], "downloads": [ "https://ftp.math.utah.edu/pub/ndiff/ndiff-2.00.tar.gz", "https://ftp.math.utah.edu/pub/ndiff/ndiff-1.00.tar.gz" ], "homepages": [ "https://ftp.math.utah.edu/pub/ndiff/" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "ndiff", "patches": [], "summary": "The ndiff tool is a binary utility that compares putatively similar\nfiles while ignoring small numeric differernces. This utility is most\noften used to compare files containing a lot of floating-point numeric\ndata that may be slightly different due to numeric error.\n", "version": [ { "downloads": [ "https://ftp.math.utah.edu/pub/ndiff/ndiff-1.00.tar.gz" ], "version": "1.00" }, { "downloads": [ "https://ftp.math.utah.edu/pub/ndiff/ndiff-2.00.tar.gz" ], "version": "2.00" } ] }, "ndzip": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "cmake", "cuda", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/celerity/ndzip", "https://github.com/celerity/ndzip", "https://github.com/robertu94/ndzip" ], "homepages": [ "https://github.com/fknorr/ndzip" ], "licenses": [ "MIT" ], "maintainers": [ "robertu94" ], "name": "ndzip", "patches": [], "summary": "A High-Throughput Parallel Lossless Compressor for Scientific Data\nforked from: https://github.com/fknorr/ndzip\n", "version": [ { "repositories": [ { "commit": "5b3c34991005c0924a339f2ec06750729ebbf015", "type": "git", "url": "https://github.com/robertu94/ndzip" } ], "version": "2021-11-30" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/robertu94/ndzip" } ], "version": "master" } ] }, "neartree": { "alias": [], "categories": [], "dependencies": [ "c", "cvector", "cxx", "gmake", "libtool" ], "downloads": [ "https://downloads.sourceforge.net/project/neartree/neartree/NearTree-5.1/NearTree-5.1.1.tar.gz", "https://downloads.sourceforge.net/project/neartree/neartree/NearTree-3.1/NearTree-3.1.tar.gz" ], "homepages": [ "https://neartree.sourceforge.net/" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "neartree", "patches": [ "Makefile.patch when @5.1.1", "Makefile-3.1.patch when @3.1" ], "summary": "This is a release of an API for finding nearest neighbors among points\nin spaces of arbitrary dimensions.\n", "version": [ { "downloads": [ "https://downloads.sourceforge.net/project/neartree/neartree/NearTree-3.1/NearTree-3.1.tar.gz" ], "version": "3.1" }, { "downloads": [ "https://downloads.sourceforge.net/project/neartree/neartree/NearTree-5.1/NearTree-5.1.1.tar.gz" ], "version": "5.1.1" } ] }, "neic-finitefault": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gdal", "geos", "gmake", "gmt", "proj", "py-cartopy", "py-ipykernel", "py-matplotlib", "py-netcdf4", "py-numpy", "py-obspy", "py-okada-wrapper", "py-pip", "py-poetry-core", "py-pygmt", "py-pyproj", "py-pyrocko", "py-scipy", "py-shapely", "py-typer", "py-wheel", "python", "python-venv" ], "downloads": [ "https://code.usgs.gov/ghsc/neic/algorithms/neic-finitefault/-/archive/20240410/neic-finitefault-20240410.tar.gz", "https://code.usgs.gov/ghsc/neic/algorithms/neic-finitefault/-/archive/0.1.0/neic-finitefault-0.1.0.tar.gz", "https://code.usgs.gov/ghsc/neic/algorithms/neic-finitefault" ], "homepages": [ "https://code.usgs.gov/ghsc/neic/algorithms/neic-finitefault" ], "licenses": [ "CC0-1.0" ], "maintainers": [ "snehring" ], "name": "neic-finitefault", "patches": [ "fortran-filename-length.patch" ], "summary": "Wavelet and simulated Annealing SliP inversion (WASP). This code uses a\nnonlinear simulated annealing inversion method to model slip amplitude,\nrake, rupture time, and rise time on a discretized fault plane, finding\nthe solution that best fits the observations in the wavelet domain.\n", "version": [ { "downloads": [ "https://code.usgs.gov/ghsc/neic/algorithms/neic-finitefault/-/archive/0.1.0/neic-finitefault-0.1.0.tar.gz" ], "version": "0.1.0" }, { "repositories": [ { "commit": "ef6a1a92d60549100885112e24a18e38d8d4ce0b", "type": "git", "url": "https://code.usgs.gov/ghsc/neic/algorithms/neic-finitefault" } ], "version": "20240410" } ] }, "nek5000": { "alias": [], "categories": [ "cfd", "flow", "hpc", "solver", "navier-stokes", "spectral-elements", "fluid", "ecp", "ecp-apps", "e4s" ], "dependencies": [ "c", "fortran", "mpi", "visit" ], "downloads": [ "https://github.com/Nek5000/Nek5000/archive/vdevelop.tar.gz", "https://github.com/Nek5000/Nek5000/archive/v19.0.tar.gz", "https://github.com/Nek5000/Nek5000/archive/v17.0.tar.gz", "https://github.com/Nek5000/Nek5000.git" ], "homepages": [ "https://nek5000.mcs.anl.gov/" ], "licenses": [], "maintainers": [], "name": "nek5000", "patches": [ "add_fjfortran.patch when %fj" ], "summary": "A fast and scalable high-order solver for computational fluid dynamics\n", "version": [ { "downloads": [ "https://github.com/Nek5000/Nek5000/archive/v17.0.tar.gz" ], "version": "17.0" }, { "downloads": [ "https://github.com/Nek5000/Nek5000/archive/v19.0.tar.gz" ], "version": "19.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/Nek5000/Nek5000.git" } ], "version": "develop" } ] }, "nekbone": { "alias": [], "categories": [ "proxy-app", "ecp-proxy-app", "e4s" ], "dependencies": [ "c", "fortran", "mpi" ], "downloads": [ "https://github.com/Nek5000/Nekbone/archive/vdevelop.tar.gz", "https://github.com/Nek5000/Nekbone/archive/v17.0.tar.gz", "https://github.com/Nek5000/Nekbone.git" ], "homepages": [ "https://github.com/Nek5000/Nekbone" ], "licenses": [ "mpich2" ], "maintainers": [], "name": "nekbone", "patches": [], "summary": "NEK5000 emulation software called NEKbone. Nekbone captures the basic\nstructure and user interface of the extensive Nek5000 software. Nek5000\nis a high order, incompressible Navier-Stokes solver based on the\nspectral element method.\n", "version": [ { "downloads": [ "https://github.com/Nek5000/Nekbone/archive/v17.0.tar.gz" ], "version": "17.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/Nek5000/Nekbone.git" } ], "version": "develop" } ] }, "nekcem": { "alias": [], "categories": [], "dependencies": [ "blas", "c", "fortran", "lapack", "mpi" ], "downloads": [ "https://github.com/NekCEM/NekCEM.git" ], "homepages": [ "https://nekcem.mcs.anl.gov" ], "licenses": [], "maintainers": [], "name": "nekcem", "patches": [], "summary": "Spectral-element solver for Maxwell's equations, drift-diffusion\nequations, and more.\n", "version": [ { "repositories": [ { "commit": "0b8beddfdcca646bfcc866dfda1c5f893338399b", "type": "git", "url": "https://github.com/NekCEM/NekCEM.git" } ], "version": "0b8bedd" }, { "repositories": [ { "commit": 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], "version": "0.7.1" }, { "downloads": [ "https://github.com/ExtremeFLOW/neko/releases/download/v0.7.2/neko-0.7.2.tar.gz" ], "version": "0.7.2" }, { "downloads": [ "https://github.com/ExtremeFLOW/neko/releases/download/v0.8.0/neko-0.8.0.tar.gz" ], "version": "0.8.0" }, { "downloads": [ "https://github.com/ExtremeFLOW/neko/releases/download/v0.8.1/neko-0.8.1.tar.gz" ], "version": "0.8.1" }, { "downloads": [ "https://github.com/ExtremeFLOW/neko/releases/download/v0.9.0/neko-0.9.0.tar.gz" ], "version": "0.9.0" }, { "downloads": [ "https://github.com/ExtremeFLOW/neko/releases/download/v0.9.1/neko-0.9.1.tar.gz" ], "version": "0.9.1" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/ExtremeFLOW/neko.git" } ], "version": "develop" } ] }, "nekrs": { "alias": [], "categories": [ "cfd", "flow", "hpc", "solver", "navier-stokes", "spectral-elements", "fluid", "ecp", "ecp-apps" ], "dependencies": [ "c", "cmake", "cuda", "cxx", "fortran", "git", "gmake", "hip", "hsa-rocr-dev", "llvm-amdgpu", "mpi", "ninja" ], "downloads": [ "https://github.com/Nek5000/nekRS/archive/refs/tags/v23.0.tar.gz", "https://github.com/Nek5000/nekRS/archive/refs/tags/v21.0.tar.gz", "https://github.com/Nek5000/nekRS.git" ], "homepages": [ "https://github.com/Nek5000/nekRS" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "stgeke", "thilinarmtb" ], "name": "nekrs", "patches": [], "summary": "nekRS is an open-source Navier Stokes solver based on the spectral\nelement method targeting classical processors and hardware accelerators\nlike GPUs\n", "version": [ { "repositories": [ { "commit": "bcd890bf3f9fb4d91224c83aeda75c33570f1eaa", "type": "git", "url": "https://github.com/Nek5000/nekRS.git" } ], "version": "21.0" }, { "downloads": [ "https://github.com/Nek5000/nekRS/archive/refs/tags/v23.0.tar.gz" ], "version": "23.0" } ] }, "nektar": { "alias": [], "categories": [], "dependencies": [ "arpack-ng", "blas", "boost", "c", "cmake", "cxx", "fftw", "gmake", "hdf5", "lapack", "mpi", "ninja", "python", "python-venv", "scotch", "tinyxml", "zlib" ], "downloads": [ "https://gitlab.nektar.info/nektar/nektar.git" ], "homepages": [ "https://www.nektar.info/" ], "licenses": [], "maintainers": [], "name": "nektar", "patches": [], "summary": "Nektar++: Spectral/hp Element Framework\n", "version": [ { "repositories": [ { "commit": "f286f809cfeb26cb73828c90a689a048898971d2", "type": "git", "url": "https://gitlab.nektar.info/nektar/nektar.git" } ], "version": "5.3.0" }, { "repositories": [ { "commit": "002bf62648ec667e10524ceb8a98bb1c21804130", "type": "git", "url": "https://gitlab.nektar.info/nektar/nektar.git" } ], "version": "5.4.0" }, { "repositories": [ { "commit": "4365d5d7156139f238db962deae5eb25e0437d12", "type": "git", "url": "https://gitlab.nektar.info/nektar/nektar.git" } ], "version": "5.5.0" } ] }, "nektools": { "alias": [], "categories": [ "cfd", "flow", "hpc", "solver", "navier-stokes", "spectral-elements", "fluid", "ecp", 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"downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-nemsio/archive/refs/tags/vdevelop.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-nemsio/archive/refs/tags/v2.5.5.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-nemsio/archive/refs/tags/v2.5.4.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-nemsio/archive/refs/tags/v2.5.3.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-nemsio/archive/refs/tags/v2.5.2.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-nemsio" ], "homepages": [ "https://noaa-emc.github.io/NCEPLIBS-nemsio" ], "licenses": [], "maintainers": [ "AlexanderRichert-NOAA", "Hang-Lei-NOAA", "edwardhartnett" ], "name": "nemsio", "patches": [], "summary": "The NOAA Environmental Modeling System I/O (NEMSIO) library. The basic\nfunctions it provides are to read and write data sets for all the NEMS\napplications. This is part of NOAA's NCEPLIBS project.\n", "version": [ { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-nemsio/archive/refs/tags/v2.5.2.tar.gz" ], "version": "2.5.2" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-nemsio/archive/refs/tags/v2.5.3.tar.gz" ], "version": "2.5.3" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-nemsio/archive/refs/tags/v2.5.4.tar.gz" ], "version": "2.5.4" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-nemsio/archive/refs/tags/v2.5.5.tar.gz" ], "version": "2.5.5" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/NOAA-EMC/NCEPLIBS-nemsio" } ], "version": "develop" } ] }, "nemsiogfs": { "alias": [], "categories": [], "dependencies": [ "cmake", "fortran", "gmake", "nemsio", "ninja" ], "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-nemsiogfs/archive/refs/tags/vdevelop.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-nemsiogfs/archive/refs/tags/v2.5.4.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-nemsiogfs/archive/refs/tags/v2.5.3.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-nemsiogfs" ], "homepages": [ "https://github.com/NOAA-EMC/NCEPLIBS-nemsiogfs" ], "licenses": [], "maintainers": [ "AlexanderRichert-NOAA", "Hang-Lei-NOAA", "edwardhartnett" ], "name": "nemsiogfs", "patches": [], "summary": " Performs I/O for the NEMS-GFS model. 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This is the C distribution.\n", "version": [ { "downloads": [ "https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.3.3.tar.gz" ], "version": "4.3.3" }, { "downloads": [ "https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.3.3.1.tar.gz" ], "version": "4.3.3.1" }, { "downloads": [ "https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.4.0.tar.gz" ], "version": "4.4.0" }, { "downloads": [ "https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.4.1.tar.gz" ], "version": "4.4.1" }, { "downloads": [ "https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.4.1.1.tar.gz" ], "version": "4.4.1.1" }, { "downloads": [ "https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.5.0.tar.gz" ], "version": "4.5.0" }, { "downloads": [ "https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.6.0.tar.gz" ], "version": "4.6.0" }, { "downloads": [ "https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.6.1.tar.gz" ], "version": "4.6.1" }, { "downloads": [ "https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.6.2.tar.gz" ], "version": "4.6.2" }, { "downloads": [ "https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.6.3.tar.gz" ], "version": "4.6.3" }, { "downloads": [ "https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.7.0.tar.gz" ], "version": "4.7.0" }, { "downloads": [ "https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.7.1.tar.gz" ], "version": "4.7.1" }, { "downloads": [ "https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.7.2.tar.gz" ], "version": "4.7.2" }, { "downloads": [ "https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.7.3.tar.gz" ], "version": "4.7.3" }, { "downloads": [ "https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.7.4.tar.gz" ], "version": "4.7.4" }, { "downloads": [ "https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.8.0.tar.gz" ], "version": "4.8.0" }, { "downloads": [ "https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.8.1.tar.gz" ], "version": "4.8.1" }, { "downloads": [ "https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.9.0.tar.gz" ], "version": "4.9.0" }, { "downloads": [ "https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.9.2.tar.gz" ], "version": "4.9.2" }, { "downloads": [ "https://github.com/Unidata/netcdf-c/archive/refs/tags/v4.9.3.tar.gz" ], "version": "4.9.3" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/Unidata/netcdf-c.git" } ], "version": "main" } ] }, "netcdf-cxx": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gnuconfig", "netcdf-c" ], "downloads": [ "https://downloads.unidata.ucar.edu/netcdf-cxx/4.2/netcdf-cxx-4.2.tar.gz" ], "homepages": [ "https://www.unidata.ucar.edu/software/netcdf" ], "licenses": [ "NetCDF" ], "maintainers": [ "climbfuji" ], "name": "netcdf-cxx", "patches": [ "macos.patch" ], "summary": "Deprecated C++ compatibility bindings for NetCDF. These do NOT read or\nwrite NetCDF-4 files, and are no longer maintained by Unidata.\nDevelopers should migrate to current NetCDF C++ bindings, in Spack\npackage netcdf-cxx4.\n", "version": [ { "downloads": [ "https://downloads.unidata.ucar.edu/netcdf-cxx/4.2/netcdf-cxx-4.2.tar.gz" ], "version": "4.2" } ] }, "netcdf-cxx4": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "doxygen", "gmake", "hdf5", "mpi", "netcdf-c", "ninja" ], "downloads": [ "https://downloads.unidata.ucar.edu/netcdf-cxx/4.3.1/netcdf-cxx4-4.3.1.tar.gz" ], "homepages": [ "https://www.unidata.ucar.edu/software/netcdf" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "WardF" ], "name": "netcdf-cxx4", "patches": [], "summary": "NetCDF (network Common Data Form) is a set of software libraries and\nmachine-independent data formats that support the creation, access, and\nsharing of array-oriented scientific data. This is the C++ distribution.\n", "version": [ { "downloads": [ "https://downloads.unidata.ucar.edu/netcdf-cxx/4.3.1/netcdf-cxx4-4.3.1.tar.gz" ], "version": "4.3.1" } ] }, "netcdf-fortran": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "c", "doxygen", "fortran", "gmake", "gnuconfig", "mpi", "netcdf-c" ], "downloads": [ "https://downloads.unidata.ucar.edu/netcdf-fortran/4.6.2/netcdf-fortran-4.6.2.tar.gz", "https://downloads.unidata.ucar.edu/netcdf-fortran/4.6.1/netcdf-fortran-4.6.1.tar.gz", "https://downloads.unidata.ucar.edu/netcdf-fortran/4.6.0/netcdf-fortran-4.6.0.tar.gz", "https://downloads.unidata.ucar.edu/netcdf-fortran/4.5.4/netcdf-fortran-4.5.4.tar.gz", "https://downloads.unidata.ucar.edu/netcdf-fortran/4.5.3/netcdf-fortran-4.5.3.tar.gz", "https://downloads.unidata.ucar.edu/netcdf-fortran/4.5.2/netcdf-fortran-4.5.2.tar.gz", "https://downloads.unidata.ucar.edu/netcdf-fortran/4.4.5/netcdf-fortran-4.4.5.tar.gz", "https://downloads.unidata.ucar.edu/netcdf-fortran/4.4.4/netcdf-fortran-4.4.4.tar.gz", "https://downloads.unidata.ucar.edu/netcdf-fortran/4.4.3/netcdf-fortran-4.4.3.tar.gz" ], "homepages": [ "https://www.unidata.ucar.edu/software/netcdf" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "WardF", "skosukhin" ], "name": "netcdf-fortran", "patches": [ "nag_testing.patch when @4.4.5 %nag", "logging.patch when @:4.4.5", "excessive_linking.patch when @4.4.5", "no_parallel_build.patch when @4.5.2" ], "summary": "NetCDF (network Common Data Form) is a set of software libraries and\nmachine-independent data formats that support the creation, access, and\nsharing of array-oriented scientific data. 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Reference implementations of NPB are available in commonly-used\nprogramming models like MPI and OpenMP (NPB 2 and NPB 3).\n", "version": [ { "downloads": [ "https://www.nas.nasa.gov/assets/npb/NPB3.3.1.tar.gz" ], "version": "3.3.1" }, { "downloads": [ "https://www.nas.nasa.gov/assets/npb/NPB3.4.1.tar.gz" ], "version": "3.4.1" } ] }, "npm": { "alias": [], "categories": [ "build-tools", "detectable" ], "dependencies": [ "cxx", "libvips", "node-js" ], "downloads": [ "https://registry.npmjs.org/npm/-/npm-11.2.0.tgz", "https://registry.npmjs.org/npm/-/npm-11.1.0.tgz", "https://registry.npmjs.org/npm/-/npm-10.9.2.tgz", "https://registry.npmjs.org/npm/-/npm-9.9.4.tgz", "https://registry.npmjs.org/npm/-/npm-9.3.1.tgz", "https://registry.npmjs.org/npm/-/npm-8.19.3.tgz", "https://registry.npmjs.org/npm/-/npm-7.24.2.tgz", "https://registry.npmjs.org/npm/-/npm-6.14.18.tgz", "https://github.com/npm/cli.git" ], "homepages": [ "https://github.com/npm/cli" ], "licenses": [ "Artistic-2.0" ], "maintainers": [], "name": "npm", "patches": [], "summary": "npm: A package manager for javascript.\n", "version": [ { "downloads": [ "https://registry.npmjs.org/npm/-/npm-10.9.2.tgz" ], "version": "10.9.2" }, { "downloads": [ "https://registry.npmjs.org/npm/-/npm-11.1.0.tgz" ], "version": "11.1.0" }, { "downloads": [ "https://registry.npmjs.org/npm/-/npm-11.2.0.tgz" ], "version": "11.2.0" }, { "downloads": [ "https://registry.npmjs.org/npm/-/npm-6.14.18.tgz" ], "version": "6.14.18" }, { "downloads": [ "https://registry.npmjs.org/npm/-/npm-7.24.2.tgz" ], "version": "7.24.2" }, { "downloads": [ "https://registry.npmjs.org/npm/-/npm-8.19.3.tgz" ], "version": "8.19.3" }, { "downloads": [ "https://registry.npmjs.org/npm/-/npm-9.3.1.tgz" ], "version": "9.3.1" }, { "downloads": [ "https://registry.npmjs.org/npm/-/npm-9.9.4.tgz" ], "version": "9.9.4" } ] }, "npth": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://gnupg.org/ftp/gcrypt/npth/npth-1.7.tar.bz2", "https://gnupg.org/ftp/gcrypt/npth/npth-1.6.tar.bz2", "https://gnupg.org/ftp/gcrypt/npth/npth-1.5.tar.bz2", "https://gnupg.org/ftp/gcrypt/npth/npth-1.4.tar.bz2" ], "homepages": [ "https://gnupg.org/software/npth/index.html" ], "licenses": [ "LGPL-2.0-or-later" ], "maintainers": [], "name": "npth", "patches": [], "summary": "nPth is a library to provide the GNU Pth API and thus a non-preemptive\nthreads implementation.\n", "version": [ { "downloads": [ "https://gnupg.org/ftp/gcrypt/npth/npth-1.4.tar.bz2" ], "version": "1.4" }, { "downloads": [ "https://gnupg.org/ftp/gcrypt/npth/npth-1.5.tar.bz2" ], "version": "1.5" }, { "downloads": [ "https://gnupg.org/ftp/gcrypt/npth/npth-1.6.tar.bz2" ], "version": "1.6" }, { "downloads": [ "https://gnupg.org/ftp/gcrypt/npth/npth-1.7.tar.bz2" ], "version": "1.7" } ] }, "nrm": { "alias": [], "categories": [], "dependencies": [ "py-jsonschema", "py-numpy", "py-pip", "py-pyyaml", "py-pyzmq", "py-scipy", "py-setuptools", "py-six", "py-tornado", "py-warlock", "py-wheel", "python", "python-venv" ], "downloads": [ "https://www.mcs.anl.gov/research/projects/argo/downloads/nrm-0.1.0.tar.gz" ], "homepages": [ "https://xgitlab.cels.anl.gov/argo/nrm" ], "licenses": [], "maintainers": [], "name": "nrm", "patches": [], "summary": "Node Resource Manager\n", "version": [ { "downloads": [ "https://www.mcs.anl.gov/research/projects/argo/downloads/nrm-0.1.0.tar.gz" ], "version": "0.1.0" } ] }, "ns-3-dev": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "ccache", "cmake", "cxx", "gmake", "gsl", "harfbuzz", "libxml2", "ninja", "pkgconfig", "sqlite" ], "downloads": [ "https://gitlab.com/nsnam/ns-3-dev/-/archive/ns-3.40/ns-3-dev-ns-3.40.tar.bz2", "https://gitlab.com/nsnam/ns-3-dev/-/archive/ns-3.37/ns-3-dev-ns-3.37.tar.bz2" ], "homepages": [ "https://www.nsnam.org/" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [ "yee29" ], "name": "ns-3-dev", "patches": [], "summary": "ns-3 is a discrete-event network simulator\n", "version": [ { "downloads": [ "https://gitlab.com/nsnam/ns-3-dev/-/archive/ns-3.37/ns-3-dev-ns-3.37.tar.bz2" ], "version": "3.37" }, { "downloads": [ "https://gitlab.com/nsnam/ns-3-dev/-/archive/ns-3.40/ns-3-dev-ns-3.40.tar.bz2" ], "version": "3.40" } ] }, "nseg": { "alias": [], "categories": [], "dependencies": [ "gmake" ], "downloads": [ "ftp://ftp.ncbi.nih.gov/pub/seg/nseg/nseg.c" ], "homepages": [ "ftp://ftp.ncbi.nih.gov/pub/seg/nseg/" ], "licenses": [], "maintainers": [], "name": "nseg", "patches": [], "summary": "NSEG - 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It was\ndesigned to exploit the maximum power of processors at a low development\ncost.\n", "version": [ { "downloads": [ "https://github.com/agenium-scale/nsimd/archive/v1.0.tar.gz" ], "version": "1.0" }, { "downloads": [ "https://github.com/agenium-scale/nsimd/archive/v2.1.tar.gz" ], "version": "2.1" }, { "downloads": [ "https://github.com/agenium-scale/nsimd/archive/v2.2.tar.gz" ], "version": "2.2" }, { "downloads": [ "https://github.com/agenium-scale/nsimd/archive/v3.0.tar.gz" ], "version": "3.0" }, { "downloads": [ "https://github.com/agenium-scale/nsimd/archive/v3.0.1.tar.gz" ], "version": "3.0.1" } ] }, "nspr": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gnuconfig", "perl" ], "downloads": [ "https://ftp.mozilla.org/pub/nspr/releases/v4.35/src/nspr-4.35.tar.gz", "https://ftp.mozilla.org/pub/nspr/releases/v4.32/src/nspr-4.32.tar.gz", "https://ftp.mozilla.org/pub/nspr/releases/v4.31/src/nspr-4.31.tar.gz", "https://ftp.mozilla.org/pub/nspr/releases/v4.13.1/src/nspr-4.13.1.tar.gz" ], "homepages": [ "https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS/Reference/NSPR_functions" ], "licenses": [ "MPL-2.0" ], "maintainers": [], "name": "nspr", "patches": [], "summary": "Netscape Portable Runtime (NSPR) provides a platform-neutral API for\nsystem level and libc-like functions.\n", "version": [ { "downloads": [ "https://ftp.mozilla.org/pub/nspr/releases/v4.13.1/src/nspr-4.13.1.tar.gz" ], "version": "4.13.1" }, { "downloads": [ "https://ftp.mozilla.org/pub/nspr/releases/v4.31/src/nspr-4.31.tar.gz" ], "version": "4.31" }, { "downloads": [ "https://ftp.mozilla.org/pub/nspr/releases/v4.32/src/nspr-4.32.tar.gz" ], "version": "4.32" }, { "downloads": [ "https://ftp.mozilla.org/pub/nspr/releases/v4.35/src/nspr-4.35.tar.gz" ], "version": "4.35" } ] }, "nss": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "nspr", "sqlite", "zlib-api" ], "downloads": [ "https://ftp.mozilla.org/pub/security/nss/releases/NSS_3_67_RTM/src/nss-3.67.tar.gz" ], "homepages": [ "https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS" ], "licenses": [ "MPL-2.0" ], "maintainers": [], "name": "nss", "patches": [], "summary": "Network Security Services (NSS) is a set of libraries designed to\nsupport cross-platform development of security-enabled client and server\napplications. Applications built with NSS can support SSL v3, TLS, PKCS\n#5, PKCS #7, PKCS #11, PKCS #12, S/MIME, X.509 v3 certificates, and\nother security standards.\n", "version": [ { "downloads": [ "https://ftp.mozilla.org/pub/security/nss/releases/NSS_3_73_RTM/src/nss-3.73.tar.gz" ], "version": "3.73" }, { "downloads": [ "https://ftp.mozilla.org/pub/security/nss/releases/NSS_3_75_RTM/src/nss-3.75.tar.gz" ], "version": "3.75" }, { "downloads": [ "https://ftp.mozilla.org/pub/security/nss/releases/NSS_3_87_RTM/src/nss-3.87.tar.gz" ], "version": "3.87" } ] }, "ntirpc": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "gmake", "libnsl", "ninja", "userspace-rcu" ], "downloads": [ "https://github.com/nfs-ganesha/ntirpc/archive/v3.2.tar.gz", "https://github.com/nfs-ganesha/ntirpc/archive/v3.1.tar.gz", "https://github.com/nfs-ganesha/ntirpc/archive/v3.0.tar.gz", "https://github.com/nfs-ganesha/ntirpc/archive/v1.8.0.tar.gz", "https://github.com/nfs-ganesha/ntirpc/archive/v1.7.3.tar.gz" ], "homepages": [ "https://github.com/nfs-ganesha/ntirpc" ], "licenses": [], "maintainers": [], "name": "ntirpc", "patches": [], "summary": "New development on tirpc\n", "version": [ { "downloads": [ "https://github.com/nfs-ganesha/ntirpc/archive/v1.7.3.tar.gz" ], "version": "1.7.3" }, { "downloads": [ "https://github.com/nfs-ganesha/ntirpc/archive/v1.8.0.tar.gz" ], "version": "1.8.0" }, { "downloads": [ "https://github.com/nfs-ganesha/ntirpc/archive/v3.0.tar.gz" ], "version": "3.0" }, { "downloads": [ "https://github.com/nfs-ganesha/ntirpc/archive/v3.1.tar.gz" ], "version": "3.1" }, { "downloads": [ "https://github.com/nfs-ganesha/ntirpc/archive/v3.2.tar.gz" ], "version": "3.2" } ] }, "ntl": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gmp", "perl" ], "downloads": [ "https://github.com/libntl/ntl/archive/refs/tags/v11.5.1.tar.gz", "https://github.com/libntl/ntl/archive/refs/tags/v11.5.0.tar.gz", "https://github.com/libntl/ntl/archive/refs/tags/v11.4.4.tar.gz" ], "homepages": [ "https://libntl.org" ], "licenses": [], "maintainers": [ "wohlbier" ], "name": "ntl", "patches": [], "summary": "NTL -- a library for doing number theory NTL is open-source software\ndistributed under the terms of the GNU Lesser General Public License\n(LGPL) version 2.1 or later. See the file doc/copying.txt for complete\ndetails on the licensing of NTL. Documentation is available in the file\ndoc/tour.html, which can be viewed with a web browser.\n", "version": [ { "downloads": [ "https://github.com/libntl/ntl/archive/refs/tags/v11.4.4.tar.gz" ], "version": "11.4.4" }, { "downloads": [ "https://github.com/libntl/ntl/archive/refs/tags/v11.5.0.tar.gz" ], "version": "11.5.0" }, { "downloads": [ "https://github.com/libntl/ntl/archive/refs/tags/v11.5.1.tar.gz" ], "version": "11.5.1" } ] }, "ntpoly": { "alias": [], "categories": [], "dependencies": [ "blas", "cmake", "cxx", "fortran", "gmake", "mpi", "ninja" ], "downloads": [ "https://github.com/william-dawson/NTPoly/archive/ntpoly-v3.1.0.tar.gz", "https://github.com/william-dawson/NTPoly/archive/ntpoly-v2.7.2.tar.gz", "https://github.com/william-dawson/NTPoly/archive/ntpoly-v2.3.1.tar.gz" ], "homepages": [ "https://william-dawson.github.io/NTPoly/" ], "licenses": [ "MIT" ], "maintainers": [], "name": "ntpoly", "patches": [], "summary": "NTPoly - parallel library for computing matrix functions. NTPoly is a\nlibrary for computing the functions of sparse, hermitian matrices based\non polynomial expansions. For sufficiently sparse matrices, most of the\nmatrix functions in NTPoly can be computed in linear time.\n", "version": [ { "downloads": [ "https://github.com/william-dawson/NTPoly/archive/ntpoly-v2.3.1.tar.gz" ], "version": "2.3.1" }, { "downloads": [ "https://github.com/william-dawson/NTPoly/archive/ntpoly-v2.7.2.tar.gz" ], "version": "2.7.2" }, { "downloads": [ "https://github.com/william-dawson/NTPoly/archive/ntpoly-v3.1.0.tar.gz" ], "version": "3.1.0" } ] }, "numactl": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://github.com/numactl/numactl/archive/v2.0.18.tar.gz", "https://github.com/numactl/numactl/archive/v2.0.17.tar.gz", "https://github.com/numactl/numactl/archive/v2.0.16.tar.gz", "https://github.com/numactl/numactl/archive/v2.0.14.tar.gz", "https://github.com/numactl/numactl/archive/v2.0.12.tar.gz", "https://github.com/numactl/numactl/archive/v2.0.11.tar.gz" ], "homepages": [ "https://github.com/numactl/numactl" ], "licenses": [ "LGPL-2.1-only" ], "maintainers": [], "name": "numactl", "patches": [ "numactl-2.0.11-sysmacros.patch when @2.0.11", "numactl-2.0.14-symver.patch when @2.0.14", "link-with-latomic-if-needed.patch when @2.0.14", "fix-empty-block.patch when @2.0.10:2.0.16", "link-with-latomic-if-needed-v2.0.16.patch when @2.0.16", "numactl-2.0.18-syscall-NR-ppc64.patch when @2.0.18 target=ppc64le:" ], "summary": "NUMA support for Linux\n", "version": [ { "downloads": [ "https://github.com/numactl/numactl/archive/v2.0.11.tar.gz" ], "version": "2.0.11" }, { "downloads": [ "https://github.com/numactl/numactl/archive/v2.0.12.tar.gz" ], "version": "2.0.12" }, { "downloads": [ "https://github.com/numactl/numactl/archive/v2.0.14.tar.gz" ], "version": "2.0.14" }, { "downloads": [ "https://github.com/numactl/numactl/archive/v2.0.16.tar.gz" ], "version": "2.0.16" }, { "downloads": [ "https://github.com/numactl/numactl/archive/v2.0.17.tar.gz" ], "version": "2.0.17" }, { "downloads": [ "https://github.com/numactl/numactl/archive/v2.0.18.tar.gz" ], "version": "2.0.18" } ] }, "numamma": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "gmake", "libbacktrace", "libelf", "ninja", "numactl", "numap" ], "downloads": [ "https://github.com/numamma/numamma/archive/numamma-1.1.1.tar.gz" ], "homepages": [ "https://numamma.github.io/numamma/" ], "licenses": [ "MIT" ], "maintainers": [ "trahay" ], "name": "numamma", "patches": [], "summary": "NumaMMa is a lightweight memory profiler that reports the memory access\npatterns of applications.\n", "version": [ { "downloads": [ "https://github.com/numamma/numamma/archive/numamma-1.1.1.tar.gz" ], "version": "1.1.1" } ] }, "numap": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "gmake", "libpfm4", "ninja" ], "downloads": [ "https://github.com/numap-library/numap.git" ], "homepages": [ "https://github.com/numap-library/numap" ], "licenses": [], "maintainers": [ "trahay" ], "name": "numap", "patches": [], "summary": "Numap is a Linux library dedicated to memory profiling based on hardware\nperformance monitoring unit (PMU).\n", "version": [ { "repositories": [ { "commit": "ffcdb88c64b59b7a3220eb1077d2b237029ca96a", "type": "git", "url": "https://github.com/numap-library/numap.git" } ], "version": "2019-09-06" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/numap-library/numap.git" } ], "version": "master" } ] }, "numaprof": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "intel-pin", "ninja", "numactl", "py-pyqt5", "python" ], "downloads": [ "https://github.com/memtt/numaprof/releases/download/v1.1.5/numaprof-1.1.5.tar.bz2", "https://github.com/memtt/numaprof/releases/download/v1.1.4/numaprof-1.1.4.tar.bz2" ], "homepages": [ "https://memtt.github.io/numaprof" ], "licenses": [ "CECILL-C" ], "maintainers": [ "svalat" ], "name": "numaprof", "patches": [ "numaprof-1.1.4-pin-layout.patch when @1.1.4:" ], "summary": " NumaProf is a NUMA memory access profiling tool. It is based on Intel-\nPIN to intercept all the memory access and report them on NUMA counters\nso we can tell by annotating the source code where you make local,\nremote, unpinned memory accessed. It also provide some charts to better\nunderstand the NUMA behavior of the application.\n", "version": [ { "downloads": [ "https://github.com/memtt/numaprof/releases/download/v1.1.4/numaprof-1.1.4.tar.bz2" ], "version": "1.1.4" }, { "downloads": [ "https://github.com/memtt/numaprof/releases/download/v1.1.5/numaprof-1.1.5.tar.bz2" ], "version": "1.1.5" } ] }, "numdiff": { "alias": [], "categories": [], "dependencies": [ "c", "gettext", "gmake", "gmp", "gnuconfig" ], "downloads": [ "https://nongnu.askapache.com/numdiff/numdiff-5.9.0.tar.gz", "https://nongnu.askapache.com/numdiff/numdiff-5.8.1.tar.gz" ], "homepages": [ "https://www.nongnu.org/numdiff" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "numdiff", "patches": [], "summary": "Numdiff is a little program that can be used to compare putatively\nsimilar files line by line and field by field, ignoring small numeric\ndifferences or/and different numeric formats.\n", "version": [ { "downloads": [ "https://nongnu.askapache.com/numdiff/numdiff-5.8.1.tar.gz" ], "version": "5.8.1" }, { "downloads": [ "https://nongnu.askapache.com/numdiff/numdiff-5.9.0.tar.gz" ], "version": "5.9.0" } ] }, "nut": { "alias": [], "categories": [ "proxy-app" ], "dependencies": [ "cmake", "cxx", "gmake", "ninja", "random123" ], "downloads": [ "https://github.com/lanl/NuT/archive/master.tar.gz", "https://github.com/lanl/NuT/archive/0.1.1.tar.gz", "https://github.com/lanl/NuT.git" ], "homepages": [ "https://github.com/lanl/NuT" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "nut", "patches": [], "summary": "NuT is Monte Carlo code for neutrino transport and is a C++ analog to\nthe Haskell McPhD code. 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OCCA gives\ndevelopers the ability to target devices at run-time by using run-time\ncompilation for device kernels.\n", "version": [ { "repositories": [ { "commit": "381e886886dc87823769c5f20d0ecb29dd117afa", "type": "git", "url": "https://github.com/libocca/occa.git" } ], "version": "0.1.0" }, { "repositories": [ { "commit": "2eceaa5706ad6cf3a1b153c1f2a8a2fffa2d5945", "type": "git", "url": "https://github.com/libocca/occa.git" } ], "version": "0.2.0" }, { "repositories": [ { "commit": "882ed5f92a40e60a80721727c350557be0ce6373", "type": "git", "url": "https://github.com/libocca/occa.git" } ], "version": "1.0.0-alpha.5" }, { "repositories": [ { "commit": "55264f6b3d426f160dcf1f768c42d16d3ec14676", "type": "git", "url": "https://github.com/libocca/occa.git" } ], "version": "1.0.8" }, { "repositories": [ { "commit": "ebdb659c804f91f1e0f32fd700f9fe229458033c", "type": "git", "url": "https://github.com/libocca/occa.git" } ], "version": "1.0.9" }, { "repositories": [ { "commit": 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Odgi provides an\nefficient and succinct dynamic DNA sequence graph model, as well as a\nhost of algorithms that allow the use of such graphs in bioinformatic\nanalyses.\n", "version": [ { "repositories": [ { "commit": "34f006f31c3f6b35a1eb8d58a4edb1c458583de3", "type": "git", "url": "https://github.com/pangenome/odgi.git" } ], "version": "0.8.3" } ] }, "of-catalyst": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "gl", "gmake", "ninja", "openfoam", "paraview" ], "downloads": [ "https://develop.openfoam.com/Community/catalyst.git" ], "homepages": [ "https://develop.openfoam.com/Community/catalyst" ], "licenses": [], "maintainers": [], "name": "of-catalyst", "patches": [], "summary": "Of-catalyst is a library for OpenFOAM that provides a runtime-selectable\nfunction object for embedding ParaView Catalyst in-situ visualization\ninto arbitrary OpenFOAM simulations. Supports in-situ conversion of the\nfollowing types: 1) finite volume meshes and fields, single or multi-\nregion; 2) finite area meshes and fields, single region; 3) lagrangian\n(clouds), single or multiple clouds. This offering is part of the\ncommunity repository supported by OpenCFD Ltd, producer and distributor\nof the OpenFOAM software via www.openfoam.com, and owner of the OPENFOAM\ntrademark. OpenCFD Ltd has been developing and releasing OpenFOAM since\nits debut in 2004.\n", "version": [ { "repositories": [ { "commit": "d97babec3581bad413fd602e17fcd4bc1e312d26", "type": "git", "url": "https://develop.openfoam.com/Community/catalyst.git" } ], "version": "1806" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://develop.openfoam.com/Community/catalyst.git" } ], "version": "develop" } ] }, "of-precice": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "openfoam", "pkgconfig", "precice", "yaml-cpp" ], "downloads": [ "https://github.com/precice/openfoam-adapter/archive/vdevelop.tar.gz", "https://github.com/precice/openfoam-adapter/archive/vmaster.tar.gz", "https://github.com/precice/openfoam-adapter/archive/v1.3.1.tar.gz", "https://github.com/precice/openfoam-adapter/archive/v1.2.3.tar.gz", "https://github.com/precice/openfoam-adapter/archive/v1.2.2.tar.gz", "https://github.com/precice/openfoam-adapter/archive/v1.2.1.tar.gz", "https://github.com/precice/openfoam-adapter/archive/v1.2.0.tar.gz", "https://github.com/precice/openfoam-adapter/archive/v1.1.0.tar.gz", "https://github.com/precice/openfoam-adapter/archive/v1.0.0.tar.gz", "https://github.com/precice/openfoam-adapter.git" ], "homepages": [ "https://precice.org/" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [ "MakisH", "kjrstory" ], "name": "of-precice", "patches": [], "summary": "preCICE adapter for OpenFOAM\n", "version": [ { "downloads": [ "https://github.com/precice/openfoam-adapter/archive/v1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://github.com/precice/openfoam-adapter/archive/v1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://github.com/precice/openfoam-adapter/archive/v1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://github.com/precice/openfoam-adapter/archive/v1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://github.com/precice/openfoam-adapter/archive/v1.2.2.tar.gz" ], "version": "1.2.2" }, { "downloads": [ "https://github.com/precice/openfoam-adapter/archive/v1.2.3.tar.gz" ], "version": "1.2.3" }, { "downloads": [ "https://github.com/precice/openfoam-adapter/archive/v1.3.1.tar.gz" ], "version": "1.3.1" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/precice/openfoam-adapter.git" } ], "version": "develop" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/precice/openfoam-adapter.git" } ], "version": "master" } ] }, "ollama": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cuda", "cxx", "git", "go" ], "downloads": [ "https://github.com/ollama/ollama.git" ], "homepages": [ "https://ollama.com" ], "licenses": [ "MIT" ], "maintainers": [ "brettviren", "teaguesterling" ], "name": "ollama", "patches": [], "summary": "Run Llama 2, Code Llama, and other models. 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It has\nbeen developed in order to promote the use of JPEG 2000, a still-image\ncompression standard from the Joint Photographic Experts Group (JPEG).\nSince April 2015, it is officially recognized by ISO/IEC and ITU-T as a\nJPEG 2000 Reference Software.\n", "version": [ { "downloads": [ "https://github.com/uclouvain/openjpeg/archive/version.1.5.1.tar.gz" ], "version": "1.5.1" }, { "downloads": [ "https://github.com/uclouvain/openjpeg/archive/version.1.5.2.tar.gz" ], "version": "1.5.2" }, { "downloads": [ "https://github.com/uclouvain/openjpeg/archive/version.2.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://github.com/uclouvain/openjpeg/archive/version.2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://github.com/uclouvain/openjpeg/archive/version.2.1.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://github.com/uclouvain/openjpeg/archive/v2.1.1.tar.gz" ], "version": "2.1.1" }, { "downloads": [ "https://github.com/uclouvain/openjpeg/archive/v2.1.2.tar.gz" ], "version": "2.1.2" }, { "downloads": [ "https://github.com/uclouvain/openjpeg/archive/v2.2.0.tar.gz" ], "version": "2.2.0" }, { "downloads": [ "https://github.com/uclouvain/openjpeg/archive/v2.3.0.tar.gz" ], "version": "2.3.0" }, { "downloads": [ "https://github.com/uclouvain/openjpeg/archive/v2.3.1.tar.gz" ], "version": "2.3.1" }, { "downloads": [ "https://github.com/uclouvain/openjpeg/archive/v2.4.0.tar.gz" ], "version": "2.4.0" }, { "downloads": [ "https://github.com/uclouvain/openjpeg/archive/v2.5.0.tar.gz" ], "version": "2.5.0" }, { "downloads": [ "https://github.com/uclouvain/openjpeg/archive/v2.5.1.tar.gz" ], "version": "2.5.1" }, { "downloads": [ "https://github.com/uclouvain/openjpeg/archive/v2.5.2.tar.gz" ], "version": "2.5.2" } ] }, "openkim-models": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "kim-api", "ninja" ], "downloads": [ "https://s3.openkim.org/archives/collection/openkim-models-2021-01-28.txz", "https://s3.openkim.org/archives/collection/openkim-models-2019-07-25.txz", "https://s3.openkim.org/archives/collection/openkim-models-2019-03-29.txz" ], "homepages": [ "https://openkim.org/" ], "licenses": [ "CDDL-1.0" ], "maintainers": [ "ellio167" ], "name": "openkim-models", "patches": [], "summary": "OpenKIM is an online framework for making molecular simulations\nreliable, reproducible, and portable. Computer implementations of inter-\natomic models are archived in OpenKIM, verified for coding integrity,\nand tested by computing their predictions for a variety of material\nproperties. Models conforming to the KIM application programming\ninterface (API) work seamlessly with major simulation codes that have\nadopted the KIM API standard. This package provides all models archived\nat openkim.org that are compatible with the kim-api package.\n", "version": [ { "downloads": [ "https://s3.openkim.org/archives/collection/openkim-models-2019-03-29.txz" ], "version": "2019-03-29" }, { "downloads": [ "https://s3.openkim.org/archives/collection/openkim-models-2019-07-25.txz" ], "version": "2019-07-25" }, { "downloads": [ "https://s3.openkim.org/archives/collection/openkim-models-2021-01-28.txz" ], "version": "2021-01-28" } ] }, "openldap": { "alias": [], "categories": [], "dependencies": [ "berkeley-db", "c", "cxx", "cyrus-sasl", "findutils", "gmake", "gnuconfig", "gnutls", "groff", "icu4c", "libtool", "libxcrypt", "openssl", "perl", "pkgconfig", "postgresql", "unixodbc", "uuid", "wiredtiger" ], "downloads": [ "https://www.openldap.org/software/download/OpenLDAP/openldap-release/openldap-2.6.8.tgz", "https://www.openldap.org/software/download/OpenLDAP/openldap-release/openldap-2.6.4.tgz", "https://www.openldap.org/software/download/OpenLDAP/openldap-release/openldap-2.6.0.tgz", "https://www.openldap.org/software/download/OpenLDAP/openldap-release/openldap-2.4.49.tgz", "https://www.openldap.org/software/download/OpenLDAP/openldap-release/openldap-2.4.48.tgz" ], "homepages": [ "https://www.openldap.org/" ], "licenses": [ "OLDAP-2.8" ], "maintainers": [], "name": "openldap", "patches": [], "summary": " OpenLDAP Software is an open source implementation of the Lightweight\nDirectory Access Protocol. The suite includes: slapd - stand-alone LDAP\ndaemon (server) libraries implementing the LDAP protocol, and utilities,\ntools, and sample clients.\n", "version": [ { "downloads": [ "https://www.openldap.org/software/download/OpenLDAP/openldap-release/openldap-2.4.48.tgz" ], "version": "2.4.48" }, { "downloads": [ "https://www.openldap.org/software/download/OpenLDAP/openldap-release/openldap-2.4.49.tgz" ], "version": "2.4.49" }, { "downloads": [ "https://www.openldap.org/software/download/OpenLDAP/openldap-release/openldap-2.6.0.tgz" ], "version": "2.6.0" }, { "downloads": [ "https://www.openldap.org/software/download/OpenLDAP/openldap-release/openldap-2.6.4.tgz" ], "version": "2.6.4" }, { "downloads": [ "https://www.openldap.org/software/download/OpenLDAP/openldap-release/openldap-2.6.8.tgz" ], "version": "2.6.8" } ] }, "openlibm": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake" ], "downloads": [ 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Parallelism is enabled via a\nhybrid MPI and OpenMP programming model.\n", "version": [ { "downloads": [ "https://github.com/openmc-dev/openmc/tarball/v0.10.0" ], "version": "0.10.0" }, { "downloads": [ "https://github.com/openmc-dev/openmc/tarball/v0.11.0" ], "version": "0.11.0" }, { "repositories": [ { "commit": "93d6165ecb455fc57242cd03a3f0805089c0e0b9", "type": "git", "url": "https://github.com/openmc-dev/openmc.git" } ], "version": "0.12.0" }, { "repositories": [ { "commit": "36913589c4f43b7f843332181645241f0f10ae9e", "type": "git", "url": "https://github.com/openmc-dev/openmc.git" } ], "version": "0.12.1" }, { "repositories": [ { "commit": "cbfcf908f8abdc1ef6603f67872dcf64c5c657b1", "type": "git", "url": "https://github.com/openmc-dev/openmc.git" } ], "version": "0.12.2" }, { "repositories": [ { "commit": "cff247e35785e7236d67ccf64a3401f0fc50a469", "type": "git", "url": "https://github.com/openmc-dev/openmc.git" } ], "version": "0.13.0" }, { "repositories": [ { "commit": "33bc948f4b855c037975f16d16091fe4ecd12de3", "type": "git", "url": "https://github.com/openmc-dev/openmc.git" } ], "version": "0.13.1" }, { "repositories": [ { "commit": "030f73a8690ed19e91806e46c8caf338d252e74a", "type": "git", "url": "https://github.com/openmc-dev/openmc.git" } ], "version": "0.13.2" }, { "repositories": [ { "commit": "27cb0dc97960fe6d750eb5a93584a9a0ca532ac8", "type": "git", "url": "https://github.com/openmc-dev/openmc.git" } ], "version": "0.13.3" }, { "repositories": [ { "commit": "fa2330103de61a864c958d1a7250f11e5dd91468", "type": "git", "url": "https://github.com/openmc-dev/openmc.git" } ], "version": "0.14.0" }, { "repositories": [ { "commit": "55b52b7ef3c9415ce045712132bf31c2a013d8c8", "type": "git", "url": "https://github.com/openmc-dev/openmc.git" } ], "version": "0.15.0" }, { "repositories": [ { "commit": "906548db20d4ce3c322e7317992c73b51daeb11d", "type": "git", "url": "https://github.com/openmc-dev/openmc.git" } ], "version": "0.15.1" }, { "repositories": [ { "commit": "e23760b0264c66fb7bb373aa0596801e5209d920", "type": "git", "url": "https://github.com/openmc-dev/openmc.git" } ], "version": "0.15.2" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/openmc-dev/openmc.git" } ], "version": "develop" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/openmc-dev/openmc.git" } ], "version": "master" } ] }, "openmm": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cuda", "cxx", "doxygen", "fftw", "fortran", "gmake", "ninja", "py-cython", "py-numpy", "python", "python-venv", "swig" ], "downloads": [ "https://github.com/openmm/openmm/archive/8.1.1.tar.gz", "https://github.com/openmm/openmm/archive/8.0.0.tar.gz", "https://github.com/openmm/openmm/archive/7.7.0.tar.gz", "https://github.com/openmm/openmm/archive/7.6.0.tar.gz", "https://github.com/openmm/openmm/archive/7.5.1.tar.gz", "https://github.com/openmm/openmm/archive/7.5.0.tar.gz", "https://github.com/openmm/openmm/archive/7.4.1.tar.gz" ], "homepages": [ "https://openmm.org/" ], "licenses": [], "maintainers": [], "name": "openmm", "patches": [ "https://github.com/openmm/openmm/commit/71bc7c8c70ffbccd82891dec7fd4f4deb99af64d.patch?full_index=1 when @7.5.1+cuda" ], "summary": "A high performance toolkit for molecular simulation. Use it as a\nlibrary, or as an application. We include extensive language bindings\nfor Python, C, C++, and even Fortran. The code is open source and\nactively maintained on Github, licensed under MIT and LGPL. Part of the\nOmnia suite of tools for predictive biomolecular simulation.\n", "version": [ { "downloads": [ "https://github.com/openmm/openmm/archive/7.4.1.tar.gz" ], "version": "7.4.1" }, { "downloads": [ "https://github.com/openmm/openmm/archive/7.5.0.tar.gz" ], "version": "7.5.0" }, { "downloads": [ "https://github.com/openmm/openmm/archive/7.5.1.tar.gz" ], "version": "7.5.1" }, { "downloads": [ "https://github.com/openmm/openmm/archive/7.6.0.tar.gz" ], "version": "7.6.0" }, { "downloads": [ "https://github.com/openmm/openmm/archive/7.7.0.tar.gz" ], "version": "7.7.0" }, { "downloads": [ "https://github.com/openmm/openmm/archive/8.0.0.tar.gz" ], "version": "8.0.0" }, { "downloads": [ "https://github.com/openmm/openmm/archive/8.1.1.tar.gz" ], "version": "8.1.1" } ] }, "openmolcas": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "fortran", "globalarrays", "gmake", "hdf5", "lapack", "mpi", "ninja", "openblas", "py-pyparsing", "py-six", "python" ], "downloads": [ "https://github.com/Molcas/OpenMolcas/archive/v23.06.tar.gz", "https://github.com/Molcas/OpenMolcas/archive/v21.02.tar.gz", "https://github.com/Molcas/OpenMolcas/archive/v19.11.tar.gz" ], "homepages": [ "https://gitlab.com/Molcas/OpenMolcas" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "openmolcas", "patches": [ "CMakeLists.txt.patch when target=aarch64:" ], "summary": "OpenMolcas is a quantum chemistry software package. 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"https://github.com/openPMD/openPMD-api/archive/0.14.0.tar.gz", "https://github.com/openPMD/openPMD-api/archive/0.13.4.tar.gz", "https://github.com/openPMD/openPMD-api/archive/0.13.3.tar.gz", "https://github.com/openPMD/openPMD-api/archive/0.13.2.tar.gz", "https://github.com/openPMD/openPMD-api/archive/0.13.1.tar.gz", "https://github.com/openPMD/openPMD-api/archive/0.13.0.tar.gz", "https://github.com/openPMD/openPMD-api/archive/0.12.0.tar.gz", "https://github.com/openPMD/openPMD-api/archive/0.11.1.tar.gz", "https://github.com/openPMD/openPMD-api.git" ], "homepages": [ "https://www.openPMD.org" ], "licenses": [ "LGPL-3.0-only" ], "maintainers": [ "ax3l", "franzpoeschel" ], "name": "openpmd-api", "patches": [ "hdf5-1.12.0.patch when @:0.13+hdf5", "https://github.com/openPMD/openPMD-api/commit/31e3c42eb6687269adfb0e63c35269db328ea6ec.patch?full_index=1 when @0.15.0", "https://github.com/openPMD/openPMD-api/commit/c9b0f70294ef8d9ac89018c9b439815be9e77b96.patch?full_index=1 when @0.15.0", "https://github.com/openPMD/openPMD-api/commit/b3d3057e141af3a40dde5f00262a5671979a95c7.patch?full_index=1 when @0.15.1", "https://github.com/openPMD/openPMD-api/commit/3dc3a463d18dd5f87c38ee64d93bc7814b1cbb5d.patch?full_index=1 when @0.16.0" ], "summary": "C++ & Python API for Scientific I/O\n", "version": [ { "repositories": [ { "commit": "c40292aafbf564807710424d106304f9670a8304", "type": "git", "url": "https://github.com/openPMD/openPMD-api.git" } ], "version": "0.11.1" }, { "repositories": [ { "commit": "23be484dd2570b5277779eafcc5f1eb70c6d98f2", "type": "git", "url": "https://github.com/openPMD/openPMD-api.git" } ], "version": "0.12.0" }, { "downloads": [ "https://github.com/openPMD/openPMD-api/archive/0.13.0.tar.gz" ], "version": "0.13.0" }, { "downloads": [ "https://github.com/openPMD/openPMD-api/archive/0.13.1.tar.gz" ], "version": "0.13.1" }, { "downloads": [ "https://github.com/openPMD/openPMD-api/archive/0.13.2.tar.gz" ], "version": "0.13.2" }, { "downloads": [ "https://github.com/openPMD/openPMD-api/archive/0.13.3.tar.gz" ], "version": "0.13.3" }, { "downloads": [ "https://github.com/openPMD/openPMD-api/archive/0.13.4.tar.gz" ], "version": "0.13.4" }, { "downloads": [ "https://github.com/openPMD/openPMD-api/archive/0.14.0.tar.gz" ], "version": "0.14.0" }, { "downloads": [ "https://github.com/openPMD/openPMD-api/archive/0.14.1.tar.gz" ], "version": "0.14.1" }, { "downloads": [ "https://github.com/openPMD/openPMD-api/archive/0.14.2.tar.gz" ], "version": "0.14.2" }, { "downloads": [ "https://github.com/openPMD/openPMD-api/archive/0.14.3.tar.gz" ], "version": "0.14.3" }, { "downloads": [ "https://github.com/openPMD/openPMD-api/archive/0.14.4.tar.gz" ], "version": "0.14.4" }, { "downloads": [ "https://github.com/openPMD/openPMD-api/archive/0.14.5.tar.gz" ], "version": "0.14.5" }, { "downloads": [ "https://github.com/openPMD/openPMD-api/archive/0.15.0.tar.gz" ], "version": "0.15.0" }, { "downloads": [ "https://github.com/openPMD/openPMD-api/archive/0.15.1.tar.gz" ], "version": "0.15.1" }, { "downloads": [ "https://github.com/openPMD/openPMD-api/archive/0.15.2.tar.gz" ], "version": "0.15.2" }, { "downloads": [ "https://github.com/openPMD/openPMD-api/archive/0.16.0.tar.gz" ], "version": "0.16.0" }, { "downloads": [ "https://github.com/openPMD/openPMD-api/archive/0.16.1.tar.gz" ], "version": "0.16.1" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/openPMD/openPMD-api.git" } ], "version": "develop" } ] }, "openradioss-engine": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "ninja", "openmpi", "perl", "python" ], "downloads": [ "https://github.com/OpenRadioss/OpenRadioss.git" ], "homepages": [ "https://www.openradioss.org/" ], "licenses": [ "AGPL-3.0-or-later" ], "maintainers": [ "kjrstory" ], "name": "openradioss-engine", "patches": [], "summary": " OpenRadioss is the publicly available open-source code base that a\nworldwide community of researchers, software developers, and industry\nleaders are enhancing every day. OpenRadioss is changing the game by\nempowering users to make rapid contributions that tackle the latest\nchallenges brought on by rapidly evolving technologies like battery\ndevelopment, lightweight materials and composites, human body models and\nbiomaterials, autonomous driving and flight, as well as the desire to\ngive passengers the safest environment possible via virtual testing.\nOpenRadioss Engine is a component of the OpenRadioss that runs the\nsimulation in parallel.\n", "version": [ { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/OpenRadioss/OpenRadioss.git" } ], "version": "main" } ] }, "openradioss-starter": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "ninja", "perl", "python" ], "downloads": [ "https://github.com/OpenRadioss/OpenRadioss.git" ], "homepages": [ "https://www.openradioss.org/" ], "licenses": [ "AGPL-3.0-only" ], "maintainers": [ "kjrstory" ], "name": "openradioss-starter", "patches": [], "summary": " OpenRadioss is the publicly available open-source code base that a\nworldwide community of researchers, software developers, and industry\nleaders are enhancing every day. OpenRadioss is changing the game by\nempowering users to make rapid contributions that tackle the latest\nchallenges brought on by rapidly evolving technologies like battery\ndevelopment, lightweight materials and composites, human body models and\nbiomaterials, autonomous driving and flight, as well as the desire to\ngive passengers the safest environment possible via virtual testing.\nOpenRadioss Starter is a component of the OpenRadioss that checks the\nmodel and splits the mesh.\n", "version": [ { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/OpenRadioss/OpenRadioss.git" } ], "version": "main" } ] }, "openrasmol": { "alias": [], "categories": [], "dependencies": [ "c", "cbflib", "cqrlib", "cvector", "gmake", "imake", "libxext", "libxi", "neartree", "xforms" ], "downloads": [ "https://sourceforge.net/projects/openrasmol/files/RasMol/RasMol_2.7.5/RasMol-2.7.5.2.tar.gz" ], "homepages": [ "http://www.openrasmol.org/" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "openrasmol", "patches": [ "rasmol_noqa.patch", "rasmol_help.patch" ], "summary": "RasMol is a molecular graphics program intended for the visualisation of\nproteins, nucleic acids and small molecules.\n", "version": [ { "downloads": [ "https://sourceforge.net/projects/openrasmol/files/RasMol/RasMol_2.7.5/RasMol-2.7.5.2.tar.gz" ], "version": "2.7.5.2" } ] }, "openresty": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gnuconfig", "pcre" ], "downloads": [ "https://github.com/openresty/openresty/releases/download/v1.25.3.1/openresty-1.25.3.1.tar.gz", "https://github.com/openresty/openresty/releases/download/v1.15.8.2/openresty-1.15.8.2.tar.gz", "https://github.com/openresty/openresty/releases/download/v1.15.8.1/openresty-1.15.8.1.tar.gz", "https://github.com/openresty/openresty/releases/download/v1.13.6.2/openresty-1.13.6.2.tar.gz" ], "homepages": [ "https://github.com/openresty" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "openresty", "patches": [], "summary": " OpenResty is a full-fledged web application server by bundling the\nstandard nginx core, lots of 3rd-party nginx modules, as well as most of\ntheir external dependencies.\n", "version": [ { "downloads": [ "https://github.com/openresty/openresty/releases/download/v1.13.6.2/openresty-1.13.6.2.tar.gz" ], "version": "1.13.6.2" }, { "downloads": [ "https://github.com/openresty/openresty/releases/download/v1.15.8.1/openresty-1.15.8.1.tar.gz" ], "version": "1.15.8.1" }, { "downloads": [ "https://github.com/openresty/openresty/releases/download/v1.15.8.2/openresty-1.15.8.2.tar.gz" ], "version": "1.15.8.2" }, { "downloads": [ "https://github.com/openresty/openresty/releases/download/v1.25.3.1/openresty-1.25.3.1.tar.gz" ], "version": "1.25.3.1" } ] }, "openscenegraph": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "coin3d", "cxx", "dcmtk", "ffmpeg", "fontconfig", "gdal", "gl", "glib", "gmake", "ilmbase", "jasper", "libgta", "libpng", "librsvg", "libtiff", "libxinerama", "libxrandr", "ninja", "opencascade", "openexr", "pkgconfig", "poppler", "qt", "zlib-api" ], "downloads": [ "https://github.com/openscenegraph/OpenSceneGraph/archive/OpenSceneGraph-master.tar.gz", "https://github.com/openscenegraph/OpenSceneGraph/archive/OpenSceneGraph-stable.tar.gz", "https://github.com/openscenegraph/OpenSceneGraph/archive/OpenSceneGraph-3.6.5.tar.gz", "https://github.com/openscenegraph/OpenSceneGraph/archive/OpenSceneGraph-3.6.4.tar.gz", "https://github.com/openscenegraph/OpenSceneGraph/archive/OpenSceneGraph-3.4.1.tar.gz", "https://github.com/openscenegraph/OpenSceneGraph/archive/OpenSceneGraph-3.4.0.tar.gz", "https://github.com/openscenegraph/OpenSceneGraph/archive/OpenSceneGraph-3.2.3.tar.gz", "https://github.com/openscenegraph/OpenSceneGraph/archive/OpenSceneGraph-3.1.5.tar.gz", "https://github.com/openscenegraph/OpenSceneGraph.git" ], "homepages": [ "http://www.openscenegraph.org" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [ "aumuell" ], "name": "openscenegraph", "patches": [ "https://github.com/openscenegraph/OpenSceneGraph/commit/759620a3b7b787c960a7e414ba26ab5497817d40.patch?full_index=1 when @3.6:", "openscenegraph-3.6.5-openexr3.patch when @3.6:", "glibc-jasper.patch when @3.4 %gcc" ], "summary": "OpenSceneGraph is an open source, high performance 3D graphics toolkit\nthat's used in a variety of visual simulation applications.\n", "version": [ { "downloads": [ "https://github.com/openscenegraph/OpenSceneGraph/archive/OpenSceneGraph-3.1.5.tar.gz" ], "version": "3.1.5" }, { "downloads": [ "https://github.com/openscenegraph/OpenSceneGraph/archive/OpenSceneGraph-3.2.3.tar.gz" ], "version": "3.2.3" }, { "downloads": [ "https://github.com/openscenegraph/OpenSceneGraph/archive/OpenSceneGraph-3.4.0.tar.gz" ], "version": "3.4.0" }, { "downloads": [ "https://github.com/openscenegraph/OpenSceneGraph/archive/OpenSceneGraph-3.4.1.tar.gz" ], "version": "3.4.1" }, { "downloads": [ "https://github.com/openscenegraph/OpenSceneGraph/archive/OpenSceneGraph-3.6.4.tar.gz" ], "version": "3.6.4" }, { "downloads": [ "https://github.com/openscenegraph/OpenSceneGraph/archive/OpenSceneGraph-3.6.5.tar.gz" ], "version": "3.6.5" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/openscenegraph/OpenSceneGraph.git" } ], "version": "master" }, { "branch": "stable", "repositories": [ { "branch": "stable", "type": "git", "url": "https://github.com/openscenegraph/OpenSceneGraph.git" } ], "version": "stable" } ] }, "openslide": { "alias": [], "categories": [], "dependencies": [ "c", "cairo", "gdk-pixbuf", "glib", "gmake", "gnuconfig", "jpeg", "libdicom", "libpng", "libtiff", "libxml2", "meson", "ninja", "openjpeg", "pkgconfig", "sqlite", "zlib-api" ], "downloads": [ "https://github.com/openslide/openslide/releases/download/v4.0.0/openslide-4.0.0.tar.xz", "https://github.com/openslide/openslide/releases/download/v3.4.1/openslide-3.4.1.tar.xz" ], "homepages": [ "https://openslide.org/" ], "licenses": [ "LGPL-2.1-only" ], "maintainers": [ "ChristopherChristofi" ], "name": "openslide", "patches": [], "summary": "OpenSlide reads whole slide image files.\n", "version": [ { "downloads": [ "https://github.com/openslide/openslide/releases/download/v3.4.1/openslide-3.4.1.tar.xz" ], "version": "3.4.1" }, { "downloads": [ "https://github.com/openslide/openslide/releases/download/v4.0.0/openslide-4.0.0.tar.xz" ], "version": "4.0.0" } ] }, "openslp": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "byacc", "c", "cxx", "flex", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://github.com/openslp-org/openslp/archive/openslp-2.0.0.tar.gz" ], "homepages": [ "http://www.openslp.org/" ], "licenses": [], "maintainers": [], "name": "openslp", "patches": [], "summary": "OpenSLP project is an effort to develop an open-source, commercial-\ngrade, implementation of IETF Standards track Service Location Protocol\n(RFC 2608). The interface conforms to IETF Standards track, \"An API for\nService Location\" (RFC 2614)\n", "version": [ { "downloads": [ "https://github.com/openslp-org/openslp/archive/openslp-2.0.0.tar.gz" ], "version": "2.0.0" } ] }, "openspeedshop": { "alias": [], "categories": [], "dependencies": [ "binutils", "bison", "boost", "c", "cbtf", "cbtf-argonavis", "cbtf-krell", "cmake", "cxx", "dyninst", "elfutils", "flex", "fortran", "gmake", "libdwarf", "libtool", "libxml2", "mrnet", "ninja", "python", "qt", "sqlite" ], "downloads": [ "https://github.com/OpenSpeedShop/openspeedshop.git" ], "homepages": [ "http://www.openspeedshop.org" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [ "jgalarowicz" ], "name": "openspeedshop", "patches": [ "arm.patch when target=aarch64:" ], "summary": "OpenSpeedShop is a community effort led by Trenza, Inc. It builds on top\nof a broad list of community infrastructures, most notably Dyninst and\nMRNet from UW, libmonitor from Rice, and PAPI from UTK. OpenSpeedShop is\nan open source multi platform Linux performance tool which is targeted\nto support performance analysis of applications running on both single\nnode and large scale IA64, IA32, EM64T, AMD64, PPC, ARM, Power8, Intel\nPhi, Blue Gene and Cray platforms. OpenSpeedShop development is hosted\nby Trenza Inc.. The infrastructure and base components of OpenSpeedShop\nare released as open source code primarily under LGPL.\n", "version": [ { "repositories": [ { "branch": "2.4.1", "type": "git", "url": "https://github.com/OpenSpeedShop/openspeedshop.git" } ], "version": "2.4.1" }, { "repositories": [ { "branch": "2.4.2", "type": "git", "url": "https://github.com/OpenSpeedShop/openspeedshop.git" } ], "version": "2.4.2" }, { "repositories": [ { "branch": "2.4.2.1", "type": "git", "url": "https://github.com/OpenSpeedShop/openspeedshop.git" } ], "version": "2.4.2.1" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/OpenSpeedShop/openspeedshop.git" } ], "version": "develop" } ] }, "openspeedshop-utils": { "alias": [], "categories": [], "dependencies": [ "binutils", "bison", "boost", "c", "cbtf", "cbtf-argonavis", "cbtf-krell", "cmake", "cxx", "dyninst", "elfutils", "flex", "fortran", "gmake", "libdwarf", "libtool", "libxml2", "mrnet", "ninja", "python", "sqlite" ], "downloads": [ "https://github.com/OpenSpeedShop/openspeedshop.git" ], "homepages": [ "http://www.openspeedshop.org" ], "licenses": [], "maintainers": [ "jgalarowicz" ], "name": "openspeedshop-utils", "patches": [ "arm.patch when target=aarch64:" ], "summary": "OpenSpeedShop is a community effort led by Trenza, Inc. It builds on top\nof a broad list of community infrastructures, most notably Dyninst and\nMRNet from UW, libmonitor from Rice, and PAPI from UTK. OpenSpeedShop is\nan open source multi platform Linux performance tool which is targeted\nto support performance analysis of applications running on both single\nnode and large scale IA64, IA32, EM64T, AMD64, PPC, ARM, Power8, Intel\nPhi, Blue Gene and Cray platforms. OpenSpeedShop development is hosted\nby Trenza Inc.. The infrastructure and base components of OpenSpeedShop\nare released as open source code primarily under LGPL. openspeedshop-\nutils is a package that does not have the qt3 gui. It was created to\navoid a conflict between openspeedshop and cbtf-argonavis-gui based on\nthe fact that spack will not allow a qt3 and qt4/qt5 dependency in a\npackages dependency tree.\n", "version": [ { "repositories": [ { "branch": "2.4.1", "type": "git", "url": "https://github.com/OpenSpeedShop/openspeedshop.git" } ], "version": "2.4.1" }, { "repositories": [ { "branch": "2.4.2", "type": "git", "url": "https://github.com/OpenSpeedShop/openspeedshop.git" } ], "version": "2.4.2" }, { "repositories": [ { "branch": "2.4.2.1", "type": "git", "url": "https://github.com/OpenSpeedShop/openspeedshop.git" } ], "version": "2.4.2.1" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/OpenSpeedShop/openspeedshop.git" } ], "version": "develop" } ] }, "openssh": { "alias": [], "categories": [ "core-packages", "detectable" ], "dependencies": [ "c", "cxx", "gmake", "gnuconfig", "krb5", "libedit", "libxcrypt", "ncurses", "openssl", "py-twisted", "zlib-api" ], "downloads": [ "https://mirrors.sonic.net/pub/OpenBSD/OpenSSH/portable/openssh-9.9p1.tar.gz", "https://mirrors.sonic.net/pub/OpenBSD/OpenSSH/portable/openssh-9.8p1.tar.gz", "https://mirrors.sonic.net/pub/OpenBSD/OpenSSH/portable/openssh-9.7p1.tar.gz", "https://mirrors.sonic.net/pub/OpenBSD/OpenSSH/portable/openssh-9.6p1.tar.gz", "https://mirrors.sonic.net/pub/OpenBSD/OpenSSH/portable/openssh-9.5p1.tar.gz", "https://mirrors.sonic.net/pub/OpenBSD/OpenSSH/portable/openssh-9.4p1.tar.gz", "https://mirrors.sonic.net/pub/OpenBSD/OpenSSH/portable/openssh-9.3p1.tar.gz" ], "homepages": [ "https://www.openssh.com/" ], "licenses": [ "SSH-OpenSSH" ], "maintainers": [ "bernhardkaindl" ], "name": "openssh", "patches": [ "https://raw.githubusercontent.com/Homebrew/patches/1860b0a745f1fe726900974845d1b0dd3c3398d6/openssh/patch-sandbox-darwin.c-apple-sandbox-named-external.diff when platform=darwin", "https://raw.githubusercontent.com/Homebrew/patches/d8b2d8c2612fd251ac6de17bf0cc5174c3aab94c/openssh/patch-sshd.c-apple-sandbox-named-external.diff when @:9.7p1 platform=darwin", "https://raw.githubusercontent.com/Homebrew/patches/aa6c71920318f97370d74f2303d6aea387fb68e4/openssh/patch-sshd.c-apple-sandbox-named-external.diff when @9.8p1: platform=darwin" ], "summary": "OpenSSH is the premier connectivity tool for remote login with the SSH\nprotocol. It encrypts all traffic to eliminate eavesdropping, connection\nhijacking, and other attacks. In addition, OpenSSH provides a large\nsuite of secure tunneling capabilities, several authentication methods,\nand sophisticated configuration options.\n", "version": [ { "downloads": [ "https://mirrors.sonic.net/pub/OpenBSD/OpenSSH/portable/openssh-9.3p1.tar.gz" ], "version": "9.3p1" }, { "downloads": [ "https://mirrors.sonic.net/pub/OpenBSD/OpenSSH/portable/openssh-9.4p1.tar.gz" ], "version": "9.4p1" }, { "downloads": [ "https://mirrors.sonic.net/pub/OpenBSD/OpenSSH/portable/openssh-9.5p1.tar.gz" ], "version": "9.5p1" }, { "downloads": [ "https://mirrors.sonic.net/pub/OpenBSD/OpenSSH/portable/openssh-9.6p1.tar.gz" ], "version": "9.6p1" }, { "downloads": [ "https://mirrors.sonic.net/pub/OpenBSD/OpenSSH/portable/openssh-9.7p1.tar.gz" ], "version": "9.7p1" }, { "downloads": [ "https://mirrors.sonic.net/pub/OpenBSD/OpenSSH/portable/openssh-9.8p1.tar.gz" ], "version": "9.8p1" }, { "downloads": [ "https://mirrors.sonic.net/pub/OpenBSD/OpenSSH/portable/openssh-9.9p1.tar.gz" ], "version": "9.9p1" } ] }, "openssl": { "alias": [], "categories": [ "core-packages", "windows", "detectable" ], "dependencies": [ "c", "ca-certificates-mozilla", "cxx", "gmake", "nasm", "perl", "zlib-api" ], "downloads": [ "https://www.openssl.org/source/openssl-3.6.0.tar.gz", "https://www.openssl.org/source/openssl-3.5.4.tar.gz", "https://www.openssl.org/source/openssl-3.4.3.tar.gz", "https://www.openssl.org/source/openssl-3.3.5.tar.gz", "https://www.openssl.org/source/openssl-3.2.6.tar.gz", "https://www.openssl.org/source/openssl-3.0.18.tar.gz" ], "homepages": [ "https://www.openssl.org" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "AlexanderRichert-NOAA" ], "name": "openssl", "patches": [], "summary": "OpenSSL is an open source project that provides a robust, commercial-\ngrade, and full-featured toolkit for the Transport Layer Security (TLS)\nand Secure Sockets Layer (SSL) protocols. 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It's written in Java and it's amazingly fast.\n", "version": [ { "downloads": [ "https://github.com/orientechnologies/orientdb/archive/3.1.0.tar.gz" ], "version": "3.1.0" }, { "downloads": [ "https://github.com/orientechnologies/orientdb/archive/3.1.1.tar.gz" ], "version": "3.1.1" }, { "downloads": [ "https://github.com/orientechnologies/orientdb/archive/3.1.2.tar.gz" ], "version": "3.1.2" } ] }, "orthofiller": { "alias": [], "categories": [], "dependencies": [ "augustus", "bedtools2", "hmmer", "mafft", "orthofinder", "py-biopython", "py-scipy", "python", "r", "r-gamlss" ], "downloads": [ "https://github.com/mpdunne/orthofiller/archive/1.1.4.tar.gz" ], "homepages": [ "https://github.com/mpdunne/orthofiller/" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "orthofiller", "patches": [], "summary": "OrthoFiller: Identifying missing annotations for evolutionarily\nconserved genes.\n", "version": [ { "downloads": [ "https://github.com/mpdunne/orthofiller/archive/1.1.4.tar.gz" ], "version": "1.1.4" } ] }, "orthofinder": { "alias": [], "categories": [], "dependencies": [ "blast-plus", "diamond", "fastme", "fasttree", "iq-tree", "mafft", "mcl", "mmseqs2", "muscle5", "py-numpy", "py-scipy", "raxml", "raxml-ng" ], "downloads": [ "https://github.com/davidemms/OrthoFinder/releases/download/2.5.5/OrthoFinder_source.tar.gz", "https://github.com/davidemms/OrthoFinder/releases/download/2.5.4/OrthoFinder_source.tar.gz", "https://github.com/davidemms/OrthoFinder/releases/download/2.5.2/OrthoFinder_source.tar.gz", "https://github.com/davidemms/OrthoFinder/releases/download/2.2.0/OrthoFinder_source.tar.gz" ], "homepages": [ "https://github.com/davidemms/OrthoFinder" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "orthofinder", "patches": [], "summary": "OrthoFinder is a fast, accurate and comprehensive analysis tool for\ncomparative genomics. It finds orthologues and orthogroups infers rooted\ngene trees for all orthogroups and infers a rooted species tree for the\nspecies being analysed. OrthoFinder also provides comprehensive\nstatistics for comparative genomic analyses. OrthoFinder is simple to\nuse and all you need to run it is a set of protein sequence files (one\nper species) in FASTA format.\n", "version": [ { "downloads": [ "https://github.com/davidemms/OrthoFinder/releases/download/2.2.0/OrthoFinder_source.tar.gz" ], "version": "2.2.0" }, { "downloads": [ "https://github.com/davidemms/OrthoFinder/releases/download/2.5.2/OrthoFinder_source.tar.gz" ], "version": "2.5.2" }, { "downloads": [ "https://github.com/davidemms/OrthoFinder/releases/download/2.5.4/OrthoFinder_source.tar.gz" ], "version": "2.5.4" }, { "downloads": [ "https://github.com/davidemms/OrthoFinder/releases/download/2.5.5/OrthoFinder_source.tar.gz" ], "version": "2.5.5" } ] }, "orthomcl": { "alias": [], "categories": [], "dependencies": [ "blast-plus", "mariadb", "mcl", "perl" ], "downloads": [ "https://orthomcl.org/common/downloads/software/v2.0/orthomclSoftware-v2.0.9.tar.gz" ], "homepages": [ "https://orthomcl.org/orthomcl/" ], "licenses": [], "maintainers": [], "name": "orthomcl", "patches": [], "summary": "OrthoMCL is a genome-scale algorithm for grouping orthologous protein\nsequences.\n", "version": [ { "downloads": [ "https://orthomcl.org/common/downloads/software/v2.0/orthomclSoftware-v2.0.9.tar.gz" ], "version": "2.0.9" } ] }, "osg-ca-certs": { "alias": [], "categories": [], "dependencies": [ "openssl" ], "downloads": [ "https://github.com/opensciencegrid/osg-certificates.git" ], "homepages": [ "http://repo.opensciencegrid.org/cadist" ], "licenses": [], "maintainers": [ "wdconinc" ], "name": "osg-ca-certs", "patches": [], "summary": "OSG Packaging of the IGTF CA Certs and OSG-specific CAs, in the OpenSSL\n1.0.* format.\n", "version": [ { "repositories": [ { "commit": "1f7abbe392e339aae28625a4016bc98d58ad7cab", "type": "git", "url": "https://github.com/opensciencegrid/osg-certificates.git" } ], "version": "1.119.igtf.1.128" } ] }, "osi": { "alias": [], "categories": [], "dependencies": [ "c", "coinutils", "cxx", "gmake", "gnuconfig", "pkgconfig" ], "downloads": [ "https://github.com/coin-or/Osi/archive/releases/0.108.8.tar.gz", "https://github.com/coin-or/Osi/archive/releases/0.108.7.tar.gz", "https://github.com/coin-or/Osi/archive/releases/0.108.6.tar.gz" ], "homepages": [ "https://projects.coin-or.org/Osi" ], "licenses": [ "EPL-2.0" ], "maintainers": [], "name": "osi", "patches": [], "summary": "Osi (Open Solver Interface) provides an abstract base class to a generic\nlinear programming (LP) solver, along with derived classes for specific\nsolvers. Many applications may be able to use the Osi to insulate\nthemselves from a specific LP solver. That is, programs written to the\nOSI standard may be linked to any solver with an OSI interface and\nshould produce correct results. The OSI has been significantly extended\ncompared to its first incarnation. Currently, the OSI supports linear\nprogramming solvers and has rudimentary support for integer programming.\n", "version": [ { "downloads": [ "https://github.com/coin-or/Osi/archive/releases/0.108.6.tar.gz" ], "version": "0.108.6" }, { "downloads": [ "https://github.com/coin-or/Osi/archive/releases/0.108.7.tar.gz" ], "version": "0.108.7" }, { "downloads": [ "https://github.com/coin-or/Osi/archive/releases/0.108.8.tar.gz" ], "version": "0.108.8" } ] }, "osmctools": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "m4", "zlib-api" ], "downloads": [ "https://gitlab.com/osm-c-tools/osmctools/-/archive/0.9/osmctools-0.9.tar.gz", "https://gitlab.com/osm-c-tools/osmctools/-/archive/0.8/osmctools-0.8.tar.gz" ], "homepages": [ "https://gitlab.com/osm-c-tools/osmctools" ], "licenses": [ "AGPL-3.0-only" ], "maintainers": [], "name": "osmctools", "patches": [], "summary": "A few really fast tools to convert, filter and update 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It includes traditional benchmarks and performance\nmeasures such as latency, bandwidth and host overhead and can be used\nfor both traditional and GPU-enhanced nodes.\n", "version": [ { "downloads": [ "https://mvapich.cse.ohio-state.edu/download/mvapich/osu-micro-benchmarks-5.3.tar.gz" ], "version": "5.3" }, { "downloads": [ "https://mvapich.cse.ohio-state.edu/download/mvapich/osu-micro-benchmarks-5.4.tar.gz" ], "version": "5.4" }, { "downloads": [ "https://mvapich.cse.ohio-state.edu/download/mvapich/osu-micro-benchmarks-5.5.tar.gz" ], "version": "5.5" }, { "downloads": [ "https://mvapich.cse.ohio-state.edu/download/mvapich/osu-micro-benchmarks-5.6.1.tar.gz" ], "version": "5.6.1" }, { "downloads": [ "https://mvapich.cse.ohio-state.edu/download/mvapich/osu-micro-benchmarks-5.6.2.tar.gz" ], "version": "5.6.2" }, { "downloads": [ "https://mvapich.cse.ohio-state.edu/download/mvapich/osu-micro-benchmarks-5.6.3.tar.gz" ], "version": "5.6.3" }, { "downloads": [ 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It helps scientists gain better insights\ninto materials phenomena and physical processes. OVITO Basic is freely\navailable for all major platforms under an open source license. It has\nserved in a growing number of computational simulation studies as a\npowerful tool to analyze, understand and illustrate simulation results.\n", "version": [ { "downloads": [ "https://www.ovito.org/download/master/ovito-basic-3.6.0-x86_64.tar.xz" ], "version": "3.6.0" } ] }, "oxide-rs": { "alias": [], "categories": [], "dependencies": [ "rust" ], "downloads": [ "https://github.com/oxidecomputer/oxide.rs.git" ], "homepages": [ "https://github.com/oxidecomputer/oxide.rs" ], "licenses": [ "MPL-2.0" ], "maintainers": [ "alecbcs" ], "name": "oxide-rs", "patches": [], "summary": "The Oxide CLI\n", "version": [ { "repositories": [ { "commit": "cb25407df4e8bb4f33eb3b110d271cd8cd6dc16d", "type": "git", "url": "https://github.com/oxidecomputer/oxide.rs.git" } ], "version": "0.9.0" } ] }, "p11-kit": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gettext", "gmake", "gnuconfig", "libffi", "libtasn1", "libtool", "m4" ], "downloads": [ "https://github.com/p11-glue/p11-kit/archive/0.24.1.tar.gz", "https://github.com/p11-glue/p11-kit/archive/0.23.21.tar.gz", "https://github.com/p11-glue/p11-kit/archive/0.23.20.tar.gz", "https://github.com/p11-glue/p11-kit/archive/0.23.19.tar.gz" ], "homepages": [ "https://p11-glue.github.io/p11-glue/p11-kit.html" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "p11-kit", "patches": [], "summary": "p11-kit aims to solve problems with coordinating the use of PKCS #11 by\ndifferent components or libraries living in the same process, by\nproviding a way to load and enumerate PKCS #11 modules, as well as a\nstandard configuration setup for installing PKCS #11 modules in such a\nway that they're discoverable.\n", "version": [ { "downloads": [ "https://github.com/p11-glue/p11-kit/archive/0.23.19.tar.gz" ], "version": "0.23.19" }, { "downloads": [ "https://github.com/p11-glue/p11-kit/archive/0.23.20.tar.gz" ], "version": "0.23.20" }, { "downloads": [ "https://github.com/p11-glue/p11-kit/archive/0.23.21.tar.gz" ], "version": "0.23.21" }, { "downloads": [ "https://github.com/p11-glue/p11-kit/archive/0.24.1.tar.gz" ], "version": "0.24.1" } ] }, "p3dfft3": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "essl", "fftw", "fortran", "gmake", "gnuconfig", "mpi" ], "downloads": [ "https://github.com/sdsc/p3dfft.3/archive/vdevelop.tar.gz", "https://github.com/sdsc/p3dfft.3/archive/v3.0.0.tar.gz", "https://github.com/sdsc/p3dfft.3.git" ], "homepages": [ "https://www.p3dfft.net" ], "licenses": [], "maintainers": [], "name": "p3dfft3", "patches": [], "summary": "P3DFFT++ (a.k.a. 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It takes the essence of P3DFFT further by creating an\nextensible, modular structure uniquely adaptable to a greater range of\nuse cases.\n", "version": [ { "downloads": [ "https://github.com/sdsc/p3dfft.3/archive/v3.0.0.tar.gz" ], "version": "3.0.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/sdsc/p3dfft.3.git" } ], "version": "develop" } ] }, "p4est": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "mpi", "zlib-api" ], "downloads": [ "https://p4est.github.io/release/p4est-2.8.7.tar.gz", "https://p4est.github.io/release/p4est-2.8.tar.gz", "https://p4est.github.io/release/p4est-2.3.2.tar.gz", "https://p4est.github.io/release/p4est-2.3.1.tar.gz", "https://p4est.github.io/release/p4est-2.2.tar.gz", "https://p4est.github.io/release/p4est-2.1.tar.gz", "https://p4est.github.io/release/p4est-2.0.tar.gz", "https://p4est.github.io/release/p4est-1.1.tar.gz" ], "homepages": [ "https://www.p4est.org" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [ "davydden" ], "name": "p4est", "patches": [ "https://github.com/cburstedde/libsc/commit/b506aab224b988fec210cc212469f2c4f58b2d04.patch?full_index=1 when @2.0", "https://github.com/cburstedde/libsc/commit/b45a51a7ef97883a3d4dcbd05cb2c77890a76f75.patch?full_index=1 when @2.0" ], "summary": "Dynamic management of a collection (a forest) of adaptive octrees in\nparallel\n", "version": [ { "downloads": [ "https://p4est.github.io/release/p4est-1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ "https://p4est.github.io/release/p4est-2.0.tar.gz" ], "version": "2.0" }, { "downloads": [ "https://p4est.github.io/release/p4est-2.1.tar.gz" ], "version": "2.1" }, { "downloads": [ "https://p4est.github.io/release/p4est-2.2.tar.gz" ], "version": "2.2" }, { "downloads": [ "https://p4est.github.io/release/p4est-2.3.1.tar.gz" ], "version": "2.3.1" }, { "downloads": [ "https://p4est.github.io/release/p4est-2.3.2.tar.gz" ], "version": "2.3.2" }, { "downloads": [ "https://p4est.github.io/release/p4est-2.8.tar.gz" ], "version": "2.8" }, { "downloads": [ "https://p4est.github.io/release/p4est-2.8.7.tar.gz" ], "version": "2.8.7" } ] }, "p7zip": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "yasm" ], "downloads": [], "homepages": [ "https://p7zip.sourceforge.net" ], "licenses": [ "DOC" ], "maintainers": [ "vmiheer" ], "name": "p7zip", "patches": [ "gcc10.patch when @16.02 %gcc@10:", "gcc11.patch when @16.02 %gcc@11:" ], "summary": "A Unix port of the 7z file archiver\n", "version": [ { "downloads": [ "https://downloads.sourceforge.net/project/p7zip/p7zip/16.02/p7zip_16.02_src_all.tar.bz2" ], "version": "16.02" }, { "downloads": [ "https://github.com/p7zip-project/p7zip/archive/refs/tags/v17.04.tar.gz" ], "version": "17.04" }, { "downloads": [ "https://github.com/p7zip-project/p7zip/archive/refs/tags/v17.05.tar.gz" ], "version": "17.05" } ] }, "pacbio-daligner": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "pacbio-dazz-db" ], "downloads": [ "https://github.com/PacificBiosciences/DALIGNER.git" ], "homepages": [ "https://github.com/PacificBiosciences/DALIGNER" ], "licenses": [], "maintainers": [], "name": "pacbio-daligner", "patches": [], "summary": "Daligner: The Dazzler \"Overlap\" Module. This is a special fork required\nfor some pacbio utilities.\n", "version": [ { "repositories": [ { "commit": "0fe5240d2cc6b55bf9e04465b700b76110749c9d", "type": "git", "url": "https://github.com/PacificBiosciences/DALIGNER.git" } ], "version": "2017-08-05" } ] }, "pacbio-damasker": { "alias": [], "categories": [], "dependencies": [ "c", "gmake" ], "downloads": [ "https://github.com/PacificBiosciences/DAMASKER.git" ], "homepages": [ "https://github.com/PacificBiosciences/DAMASKER" ], "licenses": [], "maintainers": [], "name": "pacbio-damasker", "patches": [], "summary": "Damasker: The Dazzler Repeat Masking Suite. This is a special fork\nrequired for some pacbio utilities.\n", "version": [ { "repositories": [ { "commit": "144244b77d52cb785cb1b3b8ae3ab6f3f0c63264", "type": "git", "url": "https://github.com/PacificBiosciences/DAMASKER.git" } ], "version": "2017-02-11" } ] }, "pacbio-dazz-db": { "alias": [], "categories": [], "dependencies": [ "c", "gmake" ], "downloads": [ "https://github.com/PacificBiosciences/DAZZ_DB.git" ], "homepages": [ "https://github.com/PacificBiosciences/DAZZ_DB" ], "licenses": [], "maintainers": [], "name": "pacbio-dazz-db", "patches": [], "summary": "The Dazzler Database Library. This version is a special fork required\nfor some pacbio utilities.\n", "version": [ { "repositories": [ { "commit": "f29d27d51f460563481cd227d17f4bdc5e288365", "type": "git", "url": "https://github.com/PacificBiosciences/DAZZ_DB.git" } ], "version": "2017-04-10" } ] }, "pacbio-dextractor": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "hdf5" ], "downloads": [ "https://github.com/PacificBiosciences/DEXTRACTOR.git" ], "homepages": [ "https://github.com/PacificBiosciences/DEXTRACTOR" ], "licenses": [], "maintainers": [], "name": "pacbio-dextractor", "patches": [], "summary": "The Dextractor and Compression Command Library. This is a special fork\nrequired by some pacbio utilities.\n", "version": [ { "repositories": [ { "commit": "89726800346d0bed15d98dcc577f4c7733aab4b1", "type": "git", "url": "https://github.com/PacificBiosciences/DEXTRACTOR.git" } ], "version": "2016-08-09" } ] }, "pace": { "alias": [], "categories": [], "dependencies": [ "cmake", "cnpy", "gmake", "ninja", "yaml-cpp" ], "downloads": [ "https://github.com/ICAMS/lammps-user-pace.git" ], "homepages": [ "https://www.icams.de/institute/departments-groups/atomistic-modelling-and-simulation/" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [ "hjjvandam", "rbberger" ], "name": "pace", "patches": [], "summary": "interatomic Potentials in Atomic Cluster Expansion (PACE) This library\nis required to build the ML-PACE module in LAMMPS. The library was\ndeveloped at the Interdisciplinary Centre for Advanced Materials\nSimulation (ICAMS), Ruhr University Bochum See `Phys Rev Mat 6 013804\n(2022)`__ and `Phys\nRev B 99 014104 (2019)`__\nfor details.\n", "version": [ { "repositories": [ { "commit": "e60e850359b918ca93a5e9329548a58d31f4b12b", "type": "git", "url": "https://github.com/ICAMS/lammps-user-pace.git" } ], "version": "2023.11.25.2" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/ICAMS/lammps-user-pace.git" } ], "version": "main" } ] }, "pacifica-cli": { "alias": [], "categories": [], "dependencies": [ "py-jsonschema", "py-pacifica-downloader", "py-pacifica-namespace", "py-pacifica-uploader", "py-pager", "py-pip", "py-setuptools", "py-setuptools-scm", "py-wheel", "python", "python-venv" ], "downloads": [ "https://files.pythonhosted.org/packages/source/p/pacifica-cli/pacifica-cli-0.5.2.tar.gz" ], "homepages": [ "https://github.com/pacifica/pacifica-cli/" ], "licenses": [ "LGPL-3.0-only" ], "maintainers": [], "name": "pacifica-cli", "patches": [], "summary": "Python CLI for Pacifica Core Services\n", "version": [ { "downloads": [ "https://files.pythonhosted.org/packages/source/p/pacifica-cli/pacifica-cli-0.5.2.tar.gz" ], "version": "0.5.2" } ] }, "packmol": { "alias": [], "categories": [], "dependencies": [ "cmake", "fortran", "gmake", "ninja" ], "downloads": [ "https://github.com/mcubeg/packmol/archive/20.0.0.tar.gz", "https://github.com/mcubeg/packmol/archive/18.169.tar.gz" ], "homepages": [ "https://m3g.iqm.unicamp.br/packmol/home.shtml" ], "licenses": [ "MIT" ], "maintainers": [], "name": "packmol", "patches": [], "summary": "Packmol creates an initial point for molecular dynamics simulations by\npacking molecules in defined regions of space.\n", "version": [ { "downloads": [ "https://github.com/mcubeg/packmol/archive/18.169.tar.gz" ], "version": "18.169" }, { "downloads": [ "https://github.com/mcubeg/packmol/archive/20.0.0.tar.gz" ], "version": "20.0.0" } ] }, "pacparser": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "py-setuptools", "python", "python-venv" ], "downloads": [ "https://github.com/manugarg/pacparser/archive/refs/tags/v1.4.5.tar.gz", "https://github.com/manugarg/pacparser/releases/download/1.3.7/pacparser-1.3.7.tar.gz", "https://github.com/manugarg/pacparser.git" ], "homepages": [ "https://pacparser.github.io/" ], "licenses": [ "LGPL-3.0-or-later" ], "maintainers": [], "name": "pacparser", "patches": [], "summary": "pacparser is a library to parse proxy auto-config (PAC) files.\n", "version": [ { "downloads": [ "https://github.com/manugarg/pacparser/releases/download/v1.3.7/pacparser-v1.3.7.tar.gz" ], "version": "1.3.7" }, { "downloads": [ "https://github.com/manugarg/pacparser/releases/download/v1.3.8/pacparser-v1.3.8.tar.gz" ], "version": "1.3.8" }, { "repositories": [ { "commit": "4bbfb15c96ea0b2aede2f7371e59f66e15722d41", "type": "git", "url": "https://github.com/manugarg/pacparser.git" } ], "version": "1.3.9" }, { "downloads": [ "https://github.com/manugarg/pacparser/releases/download/v1.4.0/pacparser-v1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://github.com/manugarg/pacparser/archive/refs/tags/v1.4.5.tar.gz" ], "version": "1.4.5" } ] }, "pacvim": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "ncurses" ], "downloads": [ "https://github.com/jmoon018/PacVim/archive/v1.1.1.tar.gz" ], "homepages": [ "https://github.com/jmoon018/PacVim" ], "licenses": [], "maintainers": [], "name": "pacvim", "patches": [], "summary": "Pacvim is a command-line-based game based off of Pacman. 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Various communications methods are embedded in components\nthat the user may assemble to get the needed communication stack.\n", "version": [ { "downloads": [ "https://pm2.gitlabpages.inria.fr/releases/pm2-2021-05-21.tar.gz" ], "version": "2021-05-21" }, { "downloads": [ "https://pm2.gitlabpages.inria.fr/releases/pm2-2022-05-31.tar.gz" ], "version": "2022-05-31" }, { "downloads": [ "https://pm2.gitlabpages.inria.fr/releases/pm2-2024-07-12.tar.gz" ], "version": "2024-07-12" }, { "downloads": [ "https://pm2.gitlabpages.inria.fr/releases/pm2-2024-11-21.tar.gz" ], "version": "2024-11-21" }, { "downloads": [ "https://pm2.gitlabpages.inria.fr/releases/pm2-2025-03-18.tar.gz" ], "version": "2025-03-18" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://gitlab.inria.fr/pm2/pm2.git" } ], "version": "master" } ] }, "pagit": { "alias": [], "categories": [], "dependencies": [ "c", "java", "perl" ], "downloads": [ "ftp://ftp.sanger.ac.uk/pub/resources/software/pagit/PAGIT.V1.01.64bit.tgz" ], "homepages": [ "https://www.sanger.ac.uk/science/tools/pagit" ], "licenses": [], "maintainers": [], "name": "pagit", "patches": [], "summary": "PAGIT addresses the need for software to generate high quality draft\ngenomes.\n", "version": [ { "downloads": [ "ftp://ftp.sanger.ac.uk/pub/resources/software/pagit/PAGIT.V1.01.64bit.tgz" ], "version": "1.01" } ] }, "pagmo": { "alias": [], "categories": [], "dependencies": [ "blas", "boost", "c", "cmake", "cxx", "gmake", "gsl", "ipopt", "mpi", "ninja", "py-networkx", "py-scipy", "python", "python-venv" ], "downloads": [ "https://github.com/esa/pagmo/archive/1.1.7.tar.gz" ], "homepages": [ "https://esa.github.io/pagmo/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "pagmo", "patches": [], "summary": "Parallel Global Multiobjective Optimizer (and its Python alter ego\nPyGMO) is a C++ / Python platform to perform parallel computations of\noptimisation tasks (global and local) via the asynchronous generalized\nisland model.\n", "version": [ { "downloads": [ "https://github.com/esa/pagmo/archive/1.1.7.tar.gz" ], "version": "1.1.7" } ] }, "pagmo2": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "cmake", "cxx", "gmake", "intel-tbb", "mpi", "ninja" ], "downloads": [ "https://github.com/esa/pagmo2/archive/vmaster.tar.gz", "https://github.com/esa/pagmo2/archive/v2.18.0.tar.gz", "https://github.com/esa/pagmo2.git" ], "homepages": [ "https://esa.github.io/pagmo2/" ], "licenses": [ "LGPL-3.0-or-later" ], "maintainers": [ "liuyangzhuan" ], "name": "pagmo2", "patches": [], "summary": "Parallel Global Multiobjective Optimizer (and its Python alter ego\nPyGMO) is a C++ / Python platform to perform parallel computations of\noptimisation tasks (global and local) via the asynchronous generalized\nisland model.\n", "version": [ { "downloads": [ "https://github.com/esa/pagmo2/archive/v2.18.0.tar.gz" ], "version": "2.18.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/esa/pagmo2.git" } ], "version": "master" } ] }, "paintor": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "eigen", "fortran", "gmake", "nlopt" ], "downloads": [ "https://github.com/gkichaev/PAINTOR_V3.0/archive/refs/tags/3.0.tar.gz" ], "homepages": [ "https://github.com/gkichaev/PAINTOR_V3.0" ], "licenses": [], "maintainers": [], "name": "paintor", "patches": [], "summary": "Probabilistic Annotation integrator. Fast, integrative fine mapping with\nfunctional data\n", "version": [ { "downloads": [ "https://github.com/gkichaev/PAINTOR_V3.0/archive/refs/tags/3.0.tar.gz" ], "version": "3.0" } ] }, "pajeng": { "alias": [], "categories": [], "dependencies": [ "bison", "boost", "cmake", "cxx", "flex", "fmt", "freeglut", "gmake", "ninja", "qt" ], "downloads": [ "https://github.com/schnorr/pajeng/archive/develop.tar.gz", "https://github.com/schnorr/pajeng/archive/1.3.6.tar.gz", "https://github.com/schnorr/pajeng/archive/1.3.5.tar.gz", "https://github.com/schnorr/pajeng/archive/1.3.4.tar.gz", "https://github.com/schnorr/pajeng/archive/1.3.3.tar.gz", "https://github.com/schnorr/pajeng/archive/1.3.2.tar.gz", "https://github.com/schnorr/pajeng/archive/1.3.1.tar.gz", "https://github.com/schnorr/pajeng/archive/1.3.tar.gz", "https://github.com/schnorr/pajeng/archive/1.1.tar.gz", "https://github.com/schnorr/pajeng/archive/1.0.tar.gz", "https://github.com/schnorr/pajeng.git" ], "homepages": [ "https://github.com/schnorr/pajeng" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [ "schnorr", "viniciusvgp" ], "name": "pajeng", "patches": [], "summary": "PajeNG is a re-implementation of the well-known Paje visualization tool\nfor the analysis of execution traces. PajeNG comprises the libpaje\nlibrary, and an auxiliary tool called pj_dump to transform Paje trace\nfiles to Comma-Separated Value (CSV). The space-time visualization tool\ncalled pajeng had been deprecated (removed from the sources) since\nmodern tools do a better job (see pj_gantt).\n", "version": [ { "downloads": [ "https://github.com/schnorr/pajeng/archive/1.0.tar.gz" ], "version": "1.0" }, { "downloads": [ "https://github.com/schnorr/pajeng/archive/1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ "https://github.com/schnorr/pajeng/archive/1.3.tar.gz" ], "version": "1.3" }, { "downloads": [ "https://github.com/schnorr/pajeng/archive/1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://github.com/schnorr/pajeng/archive/1.3.2.tar.gz" ], "version": "1.3.2" }, { "downloads": [ "https://github.com/schnorr/pajeng/archive/1.3.3.tar.gz" ], "version": "1.3.3" }, { "downloads": [ "https://github.com/schnorr/pajeng/archive/1.3.4.tar.gz" ], "version": "1.3.4" }, { "downloads": [ "https://github.com/schnorr/pajeng/archive/1.3.5.tar.gz" ], "version": "1.3.5" }, { "downloads": [ 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cryptography library that currently\nincludes efficient implementations of the following lattice cryptography\ncapabilities: Fully Homomorphic Encryption (FHE): - Brakerski/Fan-\nVercauteren (BFV) scheme for integer arithmetic - Brakerski-Gentry-\nVaikuntanathan (BGV) scheme for integer arithmetic - Cheon-Kim-Kim-Song\n(CKKS) scheme for real-number arithmetic - Ducas-Micciancio (FHEW) and\nChillotti-Gama-Georgieva-Izabachene (TFHE) schemes for Boolean circuit\nevaluation Multi-Party Extensions of FHE (to support multi-key FHE): -\nThreshold FHE for BGV, BFV, and CKKS schemes - Proxy Re-Encryption for\nBGV, BFV, and CKKS schemes\n", "version": [ { "repositories": [ { "branch": "feature-fixed-point-encoding", "type": "git", "url": "https://gitlab.com/palisade/palisade-development.git" } ], "version": "feature-fixed-point-encoding" }, { "repositories": [ { "commit": "5ccb14ffffd65e70db048e143ec2350b97a20d40", "type": "git", "url": "https://gitlab.com/palisade/palisade-development.git" } 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It only installs the cmakemodules\ndirectory.\n", "version": [ { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v03-14-00.tar.gz" ], "version": "3.14.0" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v03-19-11.tar.gz" ], "version": "3.19.11" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v03-19-12.tar.gz" ], "version": "3.19.12" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v03-19-09.tar.gz" ], "version": "3.19.9" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v03-20-00.tar.gz" ], "version": "3.20.00" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v03-20-01.tar.gz" ], "version": "3.20.01" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v03-20-02.tar.gz" ], "version": "3.20.02" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v03-20-03.tar.gz" ], "version": "3.20.03" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v03-20-04.tar.gz" ], "version": "3.20.04" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v03-20-05.tar.gz" ], "version": "3.20.05" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v03-21-00.tar.gz" ], "version": "3.21.00" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v03-21-01.tar.gz" ], "version": "3.21.01" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v03-24-00.tar.gz" ], "version": "3.24.0" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v03-25-01.tar.gz" ], "version": "3.25.1" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v03-25-02.tar.gz" ], "version": "3.25.2" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v03-25-03.tar.gz" ], "version": "3.25.3" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v04-00-00.tar.gz" ], "version": "4.0.0" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v04-11-02.tar.gz" ], "version": "4.11.2" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v04-02-00.tar.gz" ], "version": "4.2.0" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v04-02-01.tar.gz" ], "version": "4.2.1" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v04-03-00.tar.gz" ], "version": "4.3.0" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraPFA/archive/v04-03-01.tar.gz" ], "version": "4.3.1" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/PandoraPFA/PandoraPFA.git" } ], "version": "master" } ] }, "pandorasdk": { "alias": [], "categories": [ "hep" ], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja", "pandorapfa" ], "downloads": [ "https://github.com/PandoraPFA/PandoraSDK/archive/v0m-0a-0s.tar.gz", "https://github.com/PandoraPFA/PandoraSDK/archive/v03-0.-04.tar.gz", "https://github.com/PandoraPFA/PandoraSDK/archive/v03-0.-04.tar.gz", "https://github.com/PandoraPFA/PandoraSDK/archive/v03-0.-04.tar.gz", "https://github.com/PandoraPFA/PandoraSDK.git" ], "homepages": [ "https://github.com/PandoraPFA/PandoraSDK" ], "licenses": [], "maintainers": [ "jmcarcell", "wdconinc" ], "name": "pandorasdk", "patches": [], "summary": "Pandora Software Development Kit for pattern-recognition algorithms\n", "version": [ { "downloads": [ "https://github.com/PandoraPFA/PandoraSDK/archive/v03-04-00.tar.gz" ], "version": "3.4.0" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraSDK/archive/v03-04-01.tar.gz" ], "version": "3.4.1" }, { "downloads": [ "https://github.com/PandoraPFA/PandoraSDK/archive/v03-04-02.tar.gz" ], "version": "3.4.2" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/PandoraPFA/PandoraSDK.git" } ], "version": "master" } ] }, "pango": { "alias": [], "categories": [], "dependencies": [ "c", "cairo", "cxx", "fontconfig", "freetype", "fribidi", "glib", "gmake", "gobject-introspection", "harfbuzz", "json-glib", "libffi", "libxft", "meson", "ninja", "pkgconfig" ], "downloads": [ "http://ftp.gnome.org/pub/GNOME/sources/pango/1.40/pango-1.40.3.tar.xz" ], "homepages": [ "https://www.pango.org" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "pango", "patches": [], "summary": "Pango is a library for laying out and rendering of text, with an\nemphasis on internationalization. It can be used anywhere that text\nlayout is needed, though most of the work on Pango so far has been done\nin the context of the GTK+ widget toolkit.\n", "version": [ { "downloads": [ "http://ftp.gnome.org/pub/GNOME/sources/pango/1.45/pango-1.45.5.tar.xz" ], "version": "1.45.5" }, { "downloads": [ "http://ftp.gnome.org/pub/GNOME/sources/pango/1.46/pango-1.46.2.tar.xz" ], "version": "1.46.2" }, { "downloads": [ "http://ftp.gnome.org/pub/GNOME/sources/pango/1.47/pango-1.47.0.tar.xz" ], "version": "1.47.0" }, { "downloads": [ "http://ftp.gnome.org/pub/GNOME/sources/pango/1.48/pango-1.48.11.tar.xz" ], "version": "1.48.11" }, { "downloads": [ "http://ftp.gnome.org/pub/GNOME/sources/pango/1.49/pango-1.49.4.tar.xz" ], "version": "1.49.4" }, { "downloads": [ "http://ftp.gnome.org/pub/GNOME/sources/pango/1.50/pango-1.50.13.tar.xz" ], "version": "1.50.13" }, { "downloads": [ "http://ftp.gnome.org/pub/GNOME/sources/pango/1.50/pango-1.50.7.tar.xz" ], "version": "1.50.7" }, { "downloads": [ 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"pango" ], "downloads": [ "https://ftp.gnome.org/pub/GNOME/sources/pangomm/2.14/pangomm-2.14.1.tar.gz" ], "homepages": [ "https://www.pango.org/" ], "licenses": [ "LGPL-2.1-or-later AND GPL-2.0-or-later" ], "maintainers": [], "name": "pangomm", "patches": [], "summary": "Pangomm is a C++ interface to Pango.\n", "version": [ { "downloads": [ "https://ftp.acc.umu.se/pub/GNOME/sources/pangomm/2.14/pangomm-2.14.0.tar.gz" ], "version": "2.14.0" }, { "downloads": [ "https://ftp.acc.umu.se/pub/GNOME/sources/pangomm/2.14/pangomm-2.14.1.tar.gz" ], "version": "2.14.1" }, { "downloads": [ "https://ftp.acc.umu.se/pub/GNOME/sources/pangomm/2.24/pangomm-2.24.0.tar.gz" ], "version": "2.24.0" }, { "downloads": [ "https://ftp.acc.umu.se/pub/GNOME/sources/pangomm/2.25/pangomm-2.25.1.tar.gz" ], "version": "2.25.1" }, { "downloads": [ "https://ftp.acc.umu.se/pub/GNOME/sources/pangomm/2.26/pangomm-2.26.3.tar.gz" ], "version": "2.26.3" }, { "downloads": [ "https://ftp.acc.umu.se/pub/GNOME/sources/pangomm/2.27/pangomm-2.27.1.tar.gz" ], "version": "2.27.1" }, { "downloads": [ "https://ftp.acc.umu.se/pub/GNOME/sources/pangomm/2.28/pangomm-2.28.4.tar.xz" ], "version": "2.28.4" }, { "downloads": [ "https://ftp.acc.umu.se/pub/GNOME/sources/pangomm/2.34/pangomm-2.34.0.tar.xz" ], "version": "2.34.0" }, { "downloads": [ "https://ftp.acc.umu.se/pub/GNOME/sources/pangomm/2.35/pangomm-2.35.1.tar.xz" ], "version": "2.35.1" }, { "downloads": [ "https://ftp.acc.umu.se/pub/GNOME/sources/pangomm/2.36/pangomm-2.36.0.tar.xz" ], "version": "2.36.0" }, { "downloads": [ "https://ftp.acc.umu.se/pub/GNOME/sources/pangomm/2.37/pangomm-2.37.2.tar.xz" ], "version": "2.37.2" }, { "downloads": [ "https://ftp.acc.umu.se/pub/GNOME/sources/pangomm/2.38/pangomm-2.38.1.tar.xz" ], "version": "2.38.1" }, { "downloads": [ "https://ftp.acc.umu.se/pub/GNOME/sources/pangomm/2.39/pangomm-2.39.1.tar.xz" ], "version": "2.39.1" }, { "downloads": [ "https://ftp.acc.umu.se/pub/GNOME/sources/pangomm/2.40/pangomm-2.40.2.tar.xz" ], "version": "2.40.2" }, { "downloads": [ "https://ftp.acc.umu.se/pub/GNOME/sources/pangomm/2.41/pangomm-2.41.5.tar.xz" ], "version": "2.41.5" }, { "downloads": [ "https://ftp.acc.umu.se/pub/GNOME/sources/pangomm/2.42/pangomm-2.42.0.tar.xz" ], "version": "2.42.0" }, { "downloads": [ "https://ftp.acc.umu.se/pub/GNOME/sources/pangomm/2.43/pangomm-2.43.1.tar.xz" ], "version": "2.43.1" } ] }, "papi": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "bc", "c", "cuda", "cxx", "fortran", "gmake", "gnuconfig", "hip", "hsa-rocr-dev", "llvm-amdgpu", "lm-sensors", "perl", "rocm-openmp-extras", "rocm-smi-lib", "rocprofiler-dev", "rocprofiler-sdk" ], "downloads": [ "https://icl.utk.edu/projects/papi/downloads/papi-master.tar.gz", "https://icl.utk.edu/projects/papi/downloads/papi-7.2.0.tar.gz", "https://icl.utk.edu/projects/papi/downloads/papi-7.1.0.tar.gz", "https://icl.utk.edu/projects/papi/downloads/papi-7.0.1.tar.gz", "https://icl.utk.edu/projects/papi/downloads/papi-6.0.0.1.tar.gz", "https://icl.utk.edu/projects/papi/downloads/papi-6.0.0.tar.gz", "https://icl.utk.edu/projects/papi/downloads/papi-5.7.0.tar.gz", "https://icl.utk.edu/projects/papi/downloads/papi-5.6.0.tar.gz", "https://icl.utk.edu/projects/papi/downloads/papi-5.5.1.tar.gz", "https://icl.utk.edu/projects/papi/downloads/papi-5.5.0.tar.gz", "https://icl.utk.edu/projects/papi/downloads/papi-5.4.3.tar.gz", "https://icl.utk.edu/projects/papi/downloads/papi-5.4.1.tar.gz", "https://icl.utk.edu/projects/papi/downloads/papi-5.3.0.tar.gz", "https://github.com/icl-utk-edu/papi" ], "homepages": [ "https://icl.utk.edu/papi/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "G-Ragghianti" ], "name": "papi", "patches": [ "https://bitbucket.org/icl/papi/commits/53de184a162b8a7edff48fed01a15980664e15b1/raw when @5.4.0:5.6 %gcc@8:", "perl-in-env.patch when @7.1.0:", "sysdetect-free-form-fix.patch when @7.1.0", "crayftn-fixes.patch when @6.0.0: %cce@9:", "intel-oneapi-compiler-fixes.patch when @6.0.0:7.0.1 %oneapi", "intel-cray-freeform.patch when @7.0.1", "spack-hip-path.patch when @7.0.1" ], "summary": "PAPI provides the tool designer and application engineer with a\nconsistent interface and methodology for use of the performance counter\nhardware found in most major microprocessors. PAPI enables software\nengineers to see, in near real time, the relation between software\nperformance and processor events. In addition Component PAPI provides\naccess to a collection of components that expose performance measurement\nopportunities across the hardware and software stack.\n", "version": [ { "downloads": [ "https://icl.utk.edu/projects/papi/downloads/papi-5.3.0.tar.gz" ], "version": "5.3.0" }, { "downloads": [ "https://icl.utk.edu/projects/papi/downloads/papi-5.4.1.tar.gz" ], "version": "5.4.1" }, { "downloads": [ "https://icl.utk.edu/projects/papi/downloads/papi-5.4.3.tar.gz" ], "version": "5.4.3" }, { "downloads": [ "https://icl.utk.edu/projects/papi/downloads/papi-5.5.0.tar.gz" ], "version": "5.5.0" }, { "downloads": [ "https://icl.utk.edu/projects/papi/downloads/papi-5.5.1.tar.gz" ], "version": "5.5.1" }, { "downloads": [ "https://icl.utk.edu/projects/papi/downloads/papi-5.6.0.tar.gz" ], "version": "5.6.0" }, { "downloads": [ "https://icl.utk.edu/projects/papi/downloads/papi-5.7.0.tar.gz" ], "version": "5.7.0" }, { "downloads": [ "https://icl.utk.edu/projects/papi/downloads/papi-6.0.0.tar.gz" ], "version": "6.0.0" }, { "downloads": [ "https://icl.utk.edu/projects/papi/downloads/papi-6.0.0.1.tar.gz" ], "version": "6.0.0.1" }, { "downloads": [ "https://icl.utk.edu/projects/papi/downloads/papi-7.0.1.tar.gz" ], "version": "7.0.1" }, { "downloads": [ "https://icl.utk.edu/projects/papi/downloads/papi-7.1.0.tar.gz" ], "version": "7.1.0" }, { "downloads": [ "https://icl.utk.edu/projects/papi/downloads/papi-7.2.0.tar.gz" ], "version": "7.2.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/icl-utk-edu/papi" } ], "version": "master" } ] }, "papyrus": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "c", "cmake", "cxx", "gmake", "mpi", "ninja" ], "downloads": [ "https://code.ornl.gov/eck/papyrus/repository/archive.tar.bz2?ref=vmaster", "https://code.ornl.gov/eck/papyrus/repository/archive.tar.bz2?ref=v1.0.2", "https://code.ornl.gov/eck/papyrus/repository/archive.tar.bz2?ref=v1.0.1", "https://code.ornl.gov/eck/papyrus/repository/archive.tar.bz2?ref=v1.0.0", "https://code.ornl.gov/eck/papyrus.git" ], "homepages": [ "https://code.ornl.gov/eck/papyrus" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "papyrus", "patches": [], "summary": "Parallel Aggregate Persistent Storage\n", "version": [ { "downloads": [ "https://code.ornl.gov/eck/papyrus/repository/archive.tar.bz2?ref=v1.0.0" ], "version": "1.0.0" }, { "downloads": [ "https://code.ornl.gov/eck/papyrus/repository/archive.tar.bz2?ref=v1.0.1" ], "version": "1.0.1" }, { "downloads": [ "https://code.ornl.gov/eck/papyrus/repository/archive.tar.bz2?ref=v1.0.2" ], "version": "1.0.2" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://code.ornl.gov/eck/papyrus.git" } ], "version": "master" } ] }, "paraconf": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "libyaml", "ninja", "pkgconfig" ], "downloads": [ "https://github.com/pdidev/paraconf/archive/1.0.0.tar.gz", "https://github.com/pdidev/paraconf/archive/0.4.16.tar.gz", "https://github.com/pdidev/paraconf/archive/0.4.15.tar.gz", "https://github.com/pdidev/paraconf/archive/0.4.14.tar.gz", "https://github.com/pdidev/paraconf/archive/0.4.13.tar.gz", "https://github.com/pdidev/paraconf/archive/0.4.12.tar.gz", "https://github.com/pdidev/paraconf/archive/0.4.11.tar.gz", "https://github.com/pdidev/paraconf/archive/0.4.10.tar.gz", "https://github.com/pdidev/paraconf/archive/0.4.9.tar.gz" ], "homepages": [ "https://github.com/pdidev/paraconf" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "jbigot" ], "name": "paraconf", "patches": [], "summary": "Paraconf is a library that provides a simple query language to access a\nYaml tree on top of libyaml.\n", "version": [ { "downloads": [ "https://github.com/pdidev/paraconf/archive/0.4.10.tar.gz" ], "version": "0.4.10" }, { "downloads": [ 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"https://ftpmirror.gnu.org/parallel/parallel-20160322.tar.bz2" ], "homepages": [ "https://www.gnu.org/software/parallel/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "parallel", "patches": [], "summary": "GNU parallel is a shell tool for executing jobs in parallel using one or\nmore computers. A job can be a single command or a small script that has\nto be run for each of the lines in the input.\n", "version": [ { "downloads": [ "https://ftpmirror.gnu.org/parallel/parallel-20160322.tar.bz2" ], "version": "20160322" }, { "downloads": [ "https://ftpmirror.gnu.org/parallel/parallel-20160422.tar.bz2" ], "version": "20160422" }, { "downloads": [ "https://ftpmirror.gnu.org/parallel/parallel-20170122.tar.bz2" ], "version": "20170122" }, { "downloads": [ "https://ftpmirror.gnu.org/parallel/parallel-20170322.tar.bz2" ], "version": "20170322" }, { "downloads": [ "https://ftpmirror.gnu.org/parallel/parallel-20190222.tar.bz2" ], "version": "20190222" }, { "downloads": [ "https://ftpmirror.gnu.org/parallel/parallel-20200822.tar.bz2" ], "version": "20200822" }, { "downloads": [ "https://ftpmirror.gnu.org/parallel/parallel-20210922.tar.bz2" ], "version": "20210922" }, { "downloads": [ "https://ftpmirror.gnu.org/parallel/parallel-20220122.tar.bz2" ], "version": "20220122" }, { "downloads": 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"A family of header-only, very fast and memory-friendly hashmap and btree\ncontainers.\n", "version": [ { "downloads": [ "https://github.com/greg7mdp/parallel-hashmap/archive/refs/tags/v1.3.11.tar.gz" ], "version": "1.3.11" }, { "downloads": [ "https://github.com/greg7mdp/parallel-hashmap/archive/refs/tags/v1.3.12.tar.gz" ], "version": "1.3.12" } ] }, "parallel-netcdf": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "autoconf", "automake", "c", "cxx", "fortran", "gmake", "gnuconfig", "libtool", "m4", "mpi", "perl" ], "downloads": [ "https://parallel-netcdf.github.io/Release/pnetcdf-1.11.0.tar.gz", "https://github.com/Parallel-NetCDF/PnetCDF" ], "homepages": [ "https://parallel-netcdf.github.io/" ], "licenses": [], "maintainers": [ "skosukhin" ], "name": "parallel-netcdf", "patches": [], "summary": "PnetCDF (Parallel netCDF) is a high-performance parallel I/O library for\naccessing files in format compatibility with Unidata's NetCDF,\nspecifically the formats of CDF-1, 2, and 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The implementation relies on the framework BabelFlow, which\nallows to execute the algorithm on different runtime systems.\n", "version": [ { "repositories": [ { "commit": "9cfb68fdf0f8e881a4bfd94ae5d3ae25c9e01ea6", "type": "git", "url": "https://bitbucket.org/cedmav/parallelmergetree.git" } ], "version": "1.0.0" }, { "repositories": [ { "commit": "c0b1f305d7f8e3d0bf7cffe22c1e2ac1c0faf05e", "type": "git", "url": "https://bitbucket.org/cedmav/parallelmergetree.git" } ], "version": "1.0.2" }, { "repositories": [ { "commit": "4a5a81b2c857eda9599f257de8719f68f31a5900", "type": "git", "url": "https://bitbucket.org/cedmav/parallelmergetree.git" } ], "version": "1.1.0" }, { "repositories": [ { "commit": "d4b56978dd1b9c9d62d5dd3a0caadfc3102bdf42", "type": "git", "url": "https://bitbucket.org/cedmav/parallelmergetree.git" } ], "version": "1.1.1" }, { "repositories": [ { "commit": "22ec85177a66b3850ec3aa8ae73da4ad187f6156", "type": "git", "url": "https://bitbucket.org/cedmav/parallelmergetree.git" } ], "version": "1.1.2" } ] }, "paraview": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "adios2", "boost", "bzip2", "c", "cdi", "cli11", "cmake", "cuda", "cxx", "double-conversion", "eigen", "expat", "fortran", "freetype", "gl", "glew", "gmake", "hdf5", "hip", "hsa-rocr-dev", "jpeg", "jsoncpp", "kokkos", "libcatalyst", "libogg", "libpng", "libtheora", "libtiff", "libxml2", "libxt", "llvm-amdgpu", "lz4", "mpi", "netcdf-c", "ninja", "nlohmann-json", "openimagedenoise", "openpmd-api", "ospray", "pegtl", "proj", "protobuf", "pugixml", "py-matplotlib", "py-mpi4py", "py-numpy", "py-pandas", "python", "python-venv", "qt", "rocthrust", "silo", "tbb", "xz", "zlib-api" ], "downloads": [ "https://www.paraview.org/files/v5.7/ParaView-v5.7.0.tar.xz", "https://gitlab.kitware.com/paraview/paraview.git" ], "homepages": [ "https://www.paraview.org" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "danlipsa", "kwryankrattiger", "vicentebolea" ], "name": "paraview", "patches": [ "stl-reader-pv440.patch when @4.4.0", "gcc-compiler-pv501.patch when @:5.0.1", "ui_pqExportStateWizard.patch when @:5.1.2", "vtkm-catalyst-pv551.patch when @5.5.0:5.5.2", "h5part-parallel.patch when @5.7.0:5.7", "vtkm-findmpi-downstream.patch when @5.9.0", "paraview-gcc11-limits.patch when @5.8:5.9 %gcc@11.1.0:", "vtk-adios2-module-no-kit.patch when @5.8:5.11", "xlc-compilation-pv590.patch when @5.9.0 %xl_r", "catalyst-etc_oneapi_fix.patch when @5.10.0:5.10.1 %oneapi", "vtk-xdmf2-hdf51.13.1.patch when @5.8:5.10", "vtk-xdmf2-hdf51.13.2.patch when @5.8:5.11.0", "vtk_alias_hdf5.patch when @5.9.0:", "FindFreetype.cmake.patch when @5.10.1:", "adios2-remove-deprecated-functions.patch when @5.10:5.11 ^adios2@2.9:", "exodusII-netcdf4.9.0.patch when @5.10.0:5.10.2", "kits_with_catalyst_5_12.patch when @5.12.0", "vtkm-remove-unused-method-from-mir-tables.patch when @5.13.2 %oneapi@2025:", "vtkm-fix-problems-in-class-member-names.patch when @5.13.2 %oneapi@2025:", "pegtl_tao_find.patch when platform=windows" ], "summary": "ParaView is an open-source, multi-platform data analysis and\nvisualization application. 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"licenses": [ "BSD" ], "maintainers": [ "adamjstewart" ], "name": "pdal", "patches": [ "stdcppfs.patch when @:2.4 %gcc@:8" ], "summary": "PDAL is a C++ library for translating and manipulating point cloud data.\nIt is very much like the GDAL library which handles raster and vector\ndata.\n", "version": [ { "downloads": [ "https://github.com/PDAL/PDAL/archive/refs/tags/2.3.0.tar.gz" ], "version": "2.3.0" }, { "downloads": [ "https://github.com/PDAL/PDAL/archive/refs/tags/2.4.3.tar.gz" ], "version": "2.4.3" }, { "downloads": [ "https://github.com/PDAL/PDAL/archive/refs/tags/2.5.5.tar.gz" ], "version": "2.5.5" }, { "downloads": [ "https://github.com/PDAL/PDAL/archive/refs/tags/2.5.6.tar.gz" ], "version": "2.5.6" }, { "downloads": [ "https://github.com/PDAL/PDAL/archive/refs/tags/2.6.0.tar.gz" ], "version": "2.6.0" }, { "downloads": [ "https://github.com/PDAL/PDAL/archive/refs/tags/2.6.1.tar.gz" ], "version": "2.6.1" }, { "downloads": [ 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object management services.\nThese services allow placing data in the memory and storage hierarchy,\nperforming data movement asynchronously, and providing scalable metadata\noperations to find data objects.\n", "version": [ { "downloads": [ "https://github.com/hpc-io/pdc/archive/refs/tags/0.3.tar.gz" ], "version": "0.3" }, { "downloads": [ "https://github.com/hpc-io/pdc/archive/refs/tags/0.4.tar.gz" ], "version": "0.4" }, { "downloads": [ "https://github.com/hpc-io/pdc/archive/refs/tags/0.5.tar.gz" ], "version": "0.5" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/hpc-io/pdc.git" } ], "version": "develop" }, { "branch": "stable", "repositories": [ { "branch": "stable", "type": "git", "url": "https://github.com/hpc-io/pdc.git" } ], "version": "stable" } ] }, "pdf2svg": { "alias": [], "categories": [], "dependencies": [ "c", "cairo", "gmake", "gnuconfig", "pkgconfig", "poppler" ], "downloads": [ 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"https://www.pdflabs.com/tools/pdftk-server" ], "licenses": [], "maintainers": [ "citibeth" ], "name": "pdftk", "patches": [], "summary": "PDFtk Server is a command-line tool for working with PDFs. It is\ncommonly used for client-side scripting or server-side processing of\nPDFs.\n", "version": [ { "downloads": [ "https://www.pdflabs.com/tools/pdftk-the-pdf-toolkit/pdftk-2.02-src.zip" ], "version": "2.02" } ] }, "pdi": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "doxygen", "fortran", "gmake", "ninja", "paraconf", "pkgconfig", "py-pybind11", "py-setuptools", "python", "spdlog" ], "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/develop.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.9.2.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.9.1-fixed.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.8.3.tar.gz", "https://github.com/pdidev/pdi.git" ], "homepages": [ "https://pdi.dev" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "jbigot" ], "name": "pdi", "patches": [], "summary": "PDI is a library that aims to decouple high-performance simulation codes\nfrom Input/Output concerns. It offers a declarative application\nprogramming interface that enables codes to expose the buffers in which\nthey store data and to notify PDI of significant steps of the\nsimulation. It supports a plugin system to make existing libraries such\nas HDF5, SIONlib or FTI available to codes, potentially mixed in a\nsingle execution.\n", "version": [ { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.8.3.tar.gz" ], "version": "1.8.3" }, { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.9.1-fixed.tar.gz" ], "version": "1.9.1-fixed" }, { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.9.2.tar.gz" ], "version": "1.9.2" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/pdidev/pdi.git" } ], "version": "develop" } ] }, "pdiplugin-decl-hdf5": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "hdf5", "mpi", "ninja", "pdi", "pkgconfig" ], "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/develop.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.9.2.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.9.1-fixed.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.8.3.tar.gz", "https://github.com/pdidev/pdi.git" ], "homepages": [ "https://pdi.dev" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "jbigot" ], "name": "pdiplugin-decl-hdf5", "patches": [], "summary": "Decl'HDF5 plugin enables one to read and write data from HDF5 files in a\ndeclarative way. Decl'HDF5 does not support the full HDF5 feature set\nbut offers a simple declarative interface to access a large subset of it\nfor the PDI library\n", "version": [ { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.8.3.tar.gz" ], "version": "1.8.3" }, { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.9.1-fixed.tar.gz" ], "version": "1.9.1-fixed" }, { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.9.2.tar.gz" ], "version": "1.9.2" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/pdidev/pdi.git" } ], "version": "develop" } ] }, "pdiplugin-decl-netcdf": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "mpi", "netcdf-c", "ninja", "pdi", "pkgconfig" ], "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/develop.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.9.2.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.9.1-fixed.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.8.3.tar.gz", "https://github.com/pdidev/pdi.git" ], "homepages": [ "https://pdi.dev" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "jbigot" ], "name": "pdiplugin-decl-netcdf", "patches": [], "summary": "The trace plugin is intended to generate a trace of what happens in PDI\n\"data store\".\n", "version": [ { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.8.3.tar.gz" ], "version": "1.8.3" }, { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.9.1-fixed.tar.gz" ], "version": "1.9.1-fixed" }, { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.9.2.tar.gz" ], "version": "1.9.2" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/pdidev/pdi.git" } ], "version": "develop" } ] }, "pdiplugin-mpi": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "mpi", "ninja", "pdi", "pkgconfig" ], "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/develop.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.9.2.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.9.1-fixed.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.8.3.tar.gz", "https://github.com/pdidev/pdi.git" ], "homepages": [ "https://pdi.dev" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "jbigot" ], "name": "pdiplugin-mpi", "patches": [], "summary": "MPI plugin for the PDI library\n", "version": [ { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.8.3.tar.gz" ], "version": "1.8.3" }, { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.9.1-fixed.tar.gz" ], "version": "1.9.1-fixed" }, { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.9.2.tar.gz" ], "version": "1.9.2" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/pdidev/pdi.git" } ], "version": "develop" } ] }, "pdiplugin-pycall": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja", "pdi", "pkgconfig", "py-setuptools" ], "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/develop.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.9.2.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.9.1-fixed.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.8.3.tar.gz", "https://github.com/pdidev/pdi.git" ], "homepages": [ "https://pdi.dev" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "jbigot" ], "name": "pdiplugin-pycall", "patches": [], "summary": "pycall plugin for the PDI library\n", "version": [ { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.8.3.tar.gz" ], "version": "1.8.3" }, { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.9.1-fixed.tar.gz" ], "version": "1.9.1-fixed" }, { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.9.2.tar.gz" ], "version": "1.9.2" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/pdidev/pdi.git" } ], "version": "develop" } ] }, "pdiplugin-serialize": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja", "pdi", "pkgconfig" ], "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/develop.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.9.2.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.9.1-fixed.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.8.3.tar.gz", "https://github.com/pdidev/pdi.git" ], "homepages": [ "https://pdi.dev" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "jbigot" ], "name": "pdiplugin-serialize", "patches": [], "summary": "The trace plugin is intended to generate a trace of what happens in PDI\n\"data store\".\n", "version": [ { "downloads": [ 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"maintainers": [ "jbigot" ], "name": "pdiplugin-set-value", "patches": [], "summary": "The trace plugin is intended to generate a trace of what happens in PDI\n\"data store\".\n", "version": [ { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.8.3.tar.gz" ], "version": "1.8.3" }, { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.9.1-fixed.tar.gz" ], "version": "1.9.1-fixed" }, { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.9.2.tar.gz" ], "version": "1.9.2" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/pdidev/pdi.git" } ], "version": "develop" } ] }, "pdiplugin-trace": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja", "pdi", "pkgconfig" ], "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/develop.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.9.2.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.9.1-fixed.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.8.3.tar.gz", "https://github.com/pdidev/pdi.git" ], "homepages": [ "https://pdi.dev" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "jbigot" ], "name": "pdiplugin-trace", "patches": [], "summary": "The trace plugin is intended to generate a trace of what happens in PDI\n\"data store\".\n", "version": [ { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.8.3.tar.gz" ], "version": "1.8.3" }, { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.9.1-fixed.tar.gz" ], "version": "1.9.1-fixed" }, { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.9.2.tar.gz" ], "version": "1.9.2" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/pdidev/pdi.git" } ], "version": "develop" } ] }, "pdiplugin-user-code": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja", "pdi", "pkgconfig" ], "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/develop.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.9.2.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.9.1-fixed.tar.gz", "https://github.com/pdidev/pdi/archive/refs/tags/1.8.3.tar.gz", "https://github.com/pdidev/pdi.git" ], "homepages": [ "https://pdi.dev" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "jbigot" ], "name": "pdiplugin-user-code", "patches": [], "summary": "The user-code plugin for the PDI librarie enables one to call a user-\ndefined function when a specified event occur or certain data becomes\navailable\n", "version": [ { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.8.3.tar.gz" ], "version": "1.8.3" }, { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.9.1-fixed.tar.gz" ], "version": "1.9.1-fixed" }, { "downloads": [ "https://github.com/pdidev/pdi/archive/refs/tags/1.9.2.tar.gz" ], 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The initial\nprototype implementation was tied to TAU, but evolved to this more\ngeneric version, which was extracted as a separate repository for\ntesting and demonstration purposes.\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/khuck/perfstubs.git" } ], "version": "master" } ] }, "perl": { "alias": [], "categories": [ "windows", "build-tools", "detectable" ], "dependencies": [ "berkeley-db", "bzip2", "c", "gdbm", "gmake", "zlib-api" ], "downloads": [ "http://www.cpan.org/src/5.0/perl-5.42.0.tar.gz", "http://www.cpan.org/src/5.0/perl-5.40.2.tar.gz", "http://www.cpan.org/src/5.0/perl-5.40.0.tar.gz", "http://www.cpan.org/src/5.0/perl-5.39.10.tar.gz" ], "homepages": [ "https://www.perl.org" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "LydDeb" ], "name": "perl", "patches": [], "summary": "Perl 5 is a highly capable, feature-rich programming language with over\n27 years of development.\n", "version": [ { "downloads": [ "http://www.cpan.org/src/5.0/perl-5.39.10.tar.gz" ], "version": "5.39.10" }, { "downloads": [ "http://www.cpan.org/src/5.0/perl-5.40.0.tar.gz" ], "version": "5.40.0" }, { "downloads": [ "http://www.cpan.org/src/5.0/perl-5.40.2.tar.gz" ], "version": "5.40.2" }, { "downloads": [ "http://www.cpan.org/src/5.0/perl-5.42.0.tar.gz" ], "version": "5.42.0" } ] }, "perl-acme-damn": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/I/IB/IBB/Acme-Damn-0.08.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Acme::Damn" ], "licenses": [], "maintainers": [], "name": "perl-acme-damn", "patches": [], "summary": "Acme::Damn provides a single routine, damn(), which takes a blessed\nreference (a Perl object), and unblesses it, to return the original\nreference.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/I/IB/IBB/Acme-Damn-0.08.tar.gz" ], "version": "0.08" } ] }, "perl-algorithm-c3": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/H/HA/HAARG/Algorithm-C3-0.11.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Algorithm::C3" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-algorithm-c3", "patches": [], "summary": "A module for merging hierarchies using the C3 algorithm\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/H/HA/HAARG/Algorithm-C3-0.11.tar.gz" ], "version": "0.11" } ] }, "perl-algorithm-diff": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/T/TY/TYEMQ/Algorithm-Diff-1.1903.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Algorithm::Diff" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-algorithm-diff", "patches": [], "summary": "Compute 'intelligent' differences between two files / lists\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/T/TY/TYEMQ/Algorithm-Diff-1.1903.tar.gz" ], "version": "1.1903" } ] }, "perl-alien-build": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "perl", "perl-capture-tiny", "perl-ffi-checklib", "perl-file-chdir", "perl-file-which", "perl-path-tiny" ], "downloads": [ "https://cpan.metacpan.org/authors/id/P/PL/PLICEASE/Alien-Build-2.78.tar.gz", "https://cpan.metacpan.org/authors/id/P/PL/PLICEASE/Alien-Build-1.86.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Alien::Build" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-alien-build", "patches": [], "summary": "This module provides tools for building external (non-CPAN) dependencies\nfor CPAN. 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"https://github.com/Ensembl/ensembl/archive/release/110.zip" ], "version": "110" }, { "downloads": [ "https://github.com/Ensembl/ensembl/archive/release/111.zip" ], "version": "111" }, { "downloads": [ "https://github.com/Ensembl/ensembl/archive/release/112.zip" ], "version": "112" } ] }, "perl-bio-ensembl-funcgen": { "alias": [], "categories": [], "dependencies": [ "perl", "perl-bio-ensembl", "perl-role-tiny" ], "downloads": [ "https://github.com/Ensembl/ensembl-funcgen/archive/release/112.zip", "https://github.com/Ensembl/ensembl-funcgen/archive/release/111.zip", "https://github.com/Ensembl/ensembl-funcgen/archive/release/110.zip" ], "homepages": [ "http://ensembl.org/info/docs/api/funcgen/index.html" ], "licenses": [ "APACHE-2.0" ], "maintainers": [ "teaguesterling" ], "name": "perl-bio-ensembl-funcgen", "patches": [], "summary": "Ensembl Funcgen Perl API and SQL schema.\n", "version": [ { "downloads": [ "https://github.com/Ensembl/ensembl-funcgen/archive/release/110.zip" ], "version": "110" }, { "downloads": [ "https://github.com/Ensembl/ensembl-funcgen/archive/release/111.zip" ], "version": "111" }, { "downloads": [ "https://github.com/Ensembl/ensembl-funcgen/archive/release/112.zip" ], "version": "112" } ] }, "perl-bio-ensembl-io": { "alias": [], "categories": [], "dependencies": [ "perl", "perl-bio-bigfile", "perl-bio-db-hts", "perl-bio-ensembl", "perl-bioperl", "perl-compress-bzip2", "perl-json", "perl-try-tiny", "perl-uri", "vcftools" ], "downloads": [ "https://github.com/Ensembl/ensembl-io/archive/release/112.zip", "https://github.com/Ensembl/ensembl-io/archive/release/111.zip", "https://github.com/Ensembl/ensembl-io/archive/release/110.zip" ], "homepages": [ "https://github.com/Ensembl/ensembl-io/" ], "licenses": [ "APACHE-2.0" ], "maintainers": [ "teaguesterling" ], "name": "perl-bio-ensembl-io", "patches": [], "summary": "File parsing and writing code for Ensembl.\n", "version": [ { "downloads": [ 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"maintainers": [ "teaguesterling" ], "name": "perl-bio-ensembl-variation", "patches": [], "summary": "The Ensembl Variation Perl API and SQL schema.\n", "version": [ { "downloads": [ "https://github.com/Ensembl/ensembl-variation/archive/release/110.zip" ], "version": "110" }, { "downloads": [ "https://github.com/Ensembl/ensembl-variation/archive/release/111.zip" ], "version": "111" }, { "downloads": [ "https://github.com/Ensembl/ensembl-variation/archive/release/112.zip" ], "version": "112" } ] }, "perl-bio-eutilities": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-bio-asn1-entrezgene", "perl-bioperl", "perl-http-message", "perl-libwww-perl", "perl-text-csv", "perl-uri", "perl-xml-simple" ], "downloads": [ "https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/Bio-EUtilities-1.77.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Bio::DB::EUtilities" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-bio-eutilities", "patches": [], "summary": "BioPerl low-level API for retrieving and storing data from NCBI eUtils\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/Bio-EUtilities-1.77.tar.gz" ], "version": "1.77" } ] }, "perl-bio-searchio-hmmer": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-bioperl", "perl-io-string" ], "downloads": [ "https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/Bio-SearchIO-hmmer-1.7.3.tar.gz" ], "homepages": [ "https://github.com/bioperl/bio-searchio-hmmer" ], "licenses": [ "Artistic-1.0" ], "maintainers": [], "name": "perl-bio-searchio-hmmer", "patches": [], "summary": "BioPerl parser to HMMER output.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/Bio-SearchIO-hmmer-1.7.3.tar.gz" ], "version": "1.7.3" } ] }, "perl-bio-variation": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-bioperl", "perl-io-string", "perl-xml-twig", "perl-xml-writer" ], "downloads": [ "https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/Bio-Variation-1.7.5.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Bio::Variation" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-bio-variation", "patches": [], "summary": "BioPerl variation-related functionality\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/Bio-Variation-1.7.5.tar.gz" ], "version": "1.7.5" } ] }, "perl-bioperl": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-clone", "perl-data-stag", "perl-db-file", "perl-dbd-mysql", "perl-dbd-pg", "perl-dbd-sqlite", "perl-dbi", "perl-error", "perl-gd", "perl-graph", "perl-graphviz", "perl-http-message", "perl-io-string", "perl-io-stringy", "perl-ipc-run", "perl-libwww-perl", "perl-libxml-perl", "perl-list-moreutils", "perl-module-build", "perl-scalar-list-utils", "perl-set-scalar", "perl-svg", "perl-test-most", 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Examples include Sequence objects, Alignment\nobjects and database searching objects. These objects not only do what\nthey are advertised to do in the documentation, but they also interact -\nAlignment objects are made from the Sequence objects, Sequence objects\nhave access to Annotation and SeqFeature objects and databases, Blast\nobjects can be converted to Alignment objects, and so on. This means\nthat the objects provide a coordinated and extensible framework to do\ncomputational biology. BioPerl development focuses on Perl classes, or\ncode that is used to create objects representing biological entities.\nThere are scripts provided in the scripts/ and examples/ directories but\nscripts are not the main focus of the BioPerl developers. Of course, as\nthe objects do most of the hard work for you, all you have to do is\ncombine a number of objects together sensibly to make useful scripts.\nThe intent of the BioPerl development effort is to make reusable tools\nthat aid people in creating their own sites or job-specific\napplications. The BioPerl website at https://bioperl.org/ also attempts\nto maintain links and archives of standalone bio-related Perl tools that\nare not affiliated or related to the core BioPerl effort. Check the site\nfor useful code ideas and contribute your own if possible.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.924.tar.gz" ], "version": "1.6.924" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/C/CD/CDRAUG/BioPerl-1.7.6.tar.gz" ], "version": "1.7.6" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/BioPerl-1.7.8.tar.gz" ], "version": "1.7.8" } ] }, "perl-bit-vector": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "perl", "perl-carp-clan" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/S/ST/STBEY/Bit-Vector-7.4.tar.gz" ], "homepages": [ "https://metacpan.org/dist/Bit-Vector/view/Vector.pod" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-bit-vector", "patches": [], "summary": "Efficient bit vector, set of integers and \"big int\" math library\n", "version": [ { "downloads": [ 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perl compatibility for schmorp's modules\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/ML/MLEHMANN/Canary-Stability-2013.tar.gz" ], "version": "2013" } ] }, "perl-capture-tiny": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DA/DAGOLDEN/Capture-Tiny-0.48.tar.gz", "http://search.cpan.org/CPAN/authors/id/D/DA/DAGOLDEN/Capture-Tiny-0.46.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Capture::Tiny" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "perl-capture-tiny", "patches": [], "summary": "Capture STDOUT and STDERR from Perl, XS or external programs\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DA/DAGOLDEN/Capture-Tiny-0.46.tar.gz" ], "version": "0.46" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DA/DAGOLDEN/Capture-Tiny-0.48.tar.gz" ], "version": "0.48" } ] }, "perl-carp": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-extutils-makemaker", "perl-test-more" ], "downloads": [ "https://cpan.metacpan.org/authors/id/X/XS/XSAWYERX/Carp-1.50.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Carp" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-carp", "patches": [], "summary": "Carp - alternative warn and die for modules\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/X/XS/XSAWYERX/Carp-1.50.tar.gz" ], "version": "1.50" } ] }, "perl-carp-assert": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-extutils-makemaker" ], "downloads": [ "https://cpan.metacpan.org/authors/id/Y/YV/YVES/Carp-Assert-0.22.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Carp::Assert" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-carp-assert", "patches": [], "summary": "Carp::Assert - executable comments.\n", "version": [ { "downloads": [ 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"perl-catalyst-runtime", "perl-data-visitor", "perl-http-request-ascgi", "perl-mro-compat" ], "downloads": [ "https://cpan.metacpan.org/authors/id/B/BO/BOBTFISH/Catalyst-Action-RenderView-0.16.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Catalyst::Action::RenderView" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-catalyst-action-renderview", "patches": [], "summary": "Sensible default end action.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/B/BO/BOBTFISH/Catalyst-Action-RenderView-0.16.tar.gz" ], "version": "0.16" } ] }, "perl-catalyst-action-rest": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-catalyst-runtime", "perl-class-inspector", "perl-json-maybexs", "perl-libwww-perl", "perl-module-pluggable", "perl-moose", "perl-mro-compat", "perl-namespace-autoclean", "perl-params-validate", "perl-test-requires", "perl-uri-find" ], "downloads": [ "https://cpan.metacpan.org/authors/id/J/JJ/JJNAPIORK/Catalyst-Action-REST-1.21.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Catalyst::Action::REST" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-catalyst-action-rest", "patches": [], "summary": "Automated REST Method Dispatching\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/J/JJ/JJNAPIORK/Catalyst-Action-REST-1.21.tar.gz" ], "version": "1.21" } ] }, "perl-catalyst-component-instancepercontext": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-catalyst-runtime", "perl-moose" ], "downloads": [ "https://cpan.metacpan.org/authors/id/G/GR/GRODITI/Catalyst-Component-InstancePerContext-0.001001.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Catalyst::Component::InstancePerContext" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-catalyst-component-instancepercontext", "patches": [], "summary": "Moose role to create only one instance of component per context\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/G/GR/GRODITI/Catalyst-Component-InstancePerContext-0.001001.tar.gz" ], "version": "0.001001" } ] }, "perl-catalyst-devel": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-catalyst-action-renderview", "perl-catalyst-plugin-configloader", "perl-catalyst-plugin-static-simple", "perl-catalyst-runtime", "perl-config-general", "perl-file-changenotify", "perl-file-copy-recursive", "perl-file-sharedir", "perl-file-sharedir-install", "perl-module-install", "perl-moose", "perl-moosex-emulate-class-accessor-fast", "perl-namespace-autoclean", "perl-namespace-clean", "perl-path-class", "perl-template-toolkit", "perl-test-fatal", "perl-yaml-tiny" ], "downloads": [ "https://cpan.metacpan.org/authors/id/H/HA/HAARG/Catalyst-Devel-1.42.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Catalyst::Devel" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-catalyst-devel", "patches": [], "summary": "Catalyst Development Tools\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/H/HA/HAARG/Catalyst-Devel-1.42.tar.gz" ], "version": "1.42" } ] }, "perl-catalyst-plugin-cache": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-catalyst-runtime", "perl-class-accessor", "perl-mro-compat", "perl-task-weaken", "perl-test-deep", "perl-test-exception" ], "downloads": [ "https://cpan.metacpan.org/authors/id/B/BO/BOBTFISH/Catalyst-Plugin-Cache-0.12.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Catalyst::Plugin::Cache" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-catalyst-plugin-cache", "patches": [], "summary": "Flexible caching support for Catalyst.\n", "version": [ { "downloads": [ 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"perl-moose", "perl-namespace-autoclean" ], "downloads": [ "https://cpan.metacpan.org/authors/id/I/IL/ILMARI/Catalyst-Plugin-Static-Simple-0.37.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Catalyst::Plugin::Static::Simple" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-catalyst-plugin-static-simple", "patches": [], "summary": "Make serving static pages painless.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/I/IL/ILMARI/Catalyst-Plugin-Static-Simple-0.37.tar.gz" ], "version": "0.37" } ] }, "perl-catalyst-runtime": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-cgi-simple", "perl-cgi-struct", "perl-class-c3-adopt-next", "perl-class-load", "perl-data-dump", "perl-data-optlist", "perl-hash-multivalue", "perl-html-parser", "perl-http-body", "perl-http-message", "perl-json-maybexs", "perl-libwww-perl", "perl-module-pluggable", "perl-moose", "perl-moosex-emulate-class-accessor-fast", "perl-moosex-getopt", "perl-moosex-methodattributes", "perl-mro-compat", "perl-namespace-clean", "perl-path-class", "perl-perlio-utf8-strict", "perl-plack", "perl-plack-middleware-fixmissingbodyinredirect", "perl-plack-middleware-methodoverride", "perl-plack-middleware-removeredundantbody", "perl-plack-middleware-reverseproxy", "perl-plack-test-externalserver", "perl-safe-isa", "perl-stream-buffered", "perl-string-rewriteprefix", "perl-sub-exporter", "perl-task-weaken", "perl-test-fatal", "perl-text-simpletable", "perl-tree-simple", "perl-tree-simple-visitorfactory", "perl-try-tiny", "perl-uri", "perl-uri-ws" ], "downloads": [ "https://cpan.metacpan.org/authors/id/J/JJ/JJNAPIORK/Catalyst-Runtime-5.90131.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Catalyst::Test" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-catalyst-runtime", "patches": [], "summary": "The Catalyst Framework Runtime\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/J/JJ/JJNAPIORK/Catalyst-Runtime-5.90131.tar.gz" ], "version": "5.90131" } ] }, "perl-catalyst-view-json": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-catalyst-runtime", "perl-json-maybexs", "perl-mro-compat" ], "downloads": [ "https://cpan.metacpan.org/authors/id/H/HA/HAARG/Catalyst-View-JSON-0.37.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Catalyst::View::JSON" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-catalyst-view-json", "patches": [], "summary": "JSON view for your data\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/H/HA/HAARG/Catalyst-View-JSON-0.37.tar.gz" ], "version": "0.37" } ] }, "perl-cgi": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-html-parser" ], "downloads": [ "https://cpan.metacpan.org/authors/id/L/LE/LEEJO/CGI-4.56.tar.gz", "https://cpan.metacpan.org/authors/id/L/LE/LEEJO/CGI-4.54.tar.gz", "https://cpan.metacpan.org/authors/id/L/LE/LEEJO/CGI-4.53.tar.gz", "https://cpan.metacpan.org/authors/id/L/LE/LEEJO/CGI-4.40.tar.gz", "https://cpan.metacpan.org/authors/id/L/LE/LEEJO/CGI-4.39.tar.gz", "https://cpan.metacpan.org/authors/id/L/LE/LEEJO/CGI-4.38.tar.gz", "https://cpan.metacpan.org/authors/id/L/LE/LEEJO/CGI-4.37.tar.gz" ], "homepages": [ "https://metacpan.org/pod/CGI" ], "licenses": [ "Artistic-2.0" ], "maintainers": [ "cessenat" ], "name": "perl-cgi", "patches": [], "summary": "CGI - Handle Common Gateway Interface requests and responses CGI was\nincluded in the Perl distribution from 5.4 to 5.20 but has since been\nremoved.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/L/LE/LEEJO/CGI-4.37.tar.gz" ], "version": "4.37" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/L/LE/LEEJO/CGI-4.38.tar.gz" ], "version": "4.38" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/L/LE/LEEJO/CGI-4.39.tar.gz" ], "version": "4.39" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/L/LE/LEEJO/CGI-4.40.tar.gz" ], "version": "4.40" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/L/LE/LEEJO/CGI-4.53.tar.gz" ], "version": "4.53" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/L/LE/LEEJO/CGI-4.54.tar.gz" ], "version": "4.54" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/L/LE/LEEJO/CGI-4.56.tar.gz" ], "version": "4.56" } ] }, "perl-cgi-simple": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-test-exception", "perl-test-nowarnings" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/MA/MANWAR/CGI-Simple-1.281.tar.gz" ], "homepages": [ "https://metacpan.org/pod/CGI::Simple" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-cgi-simple", "patches": [], "summary": "A Simple totally OO CGI interface that is CGI.pm compliant\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/MA/MANWAR/CGI-Simple-1.281.tar.gz" ], "version": "1.281" } ] }, "perl-cgi-struct": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-test-deep" ], "downloads": [ "https://cpan.metacpan.org/authors/id/F/FU/FULLERMD/CGI-Struct-1.21.tar.gz" ], "homepages": [ "https://metacpan.org/pod/CGI::Struct" ], "licenses": [ "BSD" ], "maintainers": [ "EbiArnie" ], "name": "perl-cgi-struct", "patches": [], "summary": "Build structures from CGI data\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/F/FU/FULLERMD/CGI-Struct-1.21.tar.gz" ], "version": "1.21" } ] }, "perl-chart-gnuplot": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/K/KW/KWMAK/Chart/Gnuplot/Chart-Gnuplot-0.23.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Chart::Gnuplot" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-chart-gnuplot", "patches": [], "summary": "Plot graph using Gnuplot in Perl on the fly\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/K/KW/KWMAK/Chart/Gnuplot/Chart-Gnuplot-0.23.tar.gz" ], "version": "0.23" } ] }, "perl-chi": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-cache-cache", "perl-carp-assert", "perl-class-load", "perl-data-uuid", "perl-digest-jhash", "perl-hash-moreutils", "perl-json-maybexs", "perl-list-moreutils", "perl-log-any", "perl-module-mask", "perl-moo", "perl-moox-types-mooselike", "perl-moox-types-mooselike-numeric", "perl-string-rewriteprefix", "perl-task-weaken", "perl-test-class", "perl-test-deep", "perl-test-exception", "perl-test-warn", "perl-time-duration", "perl-time-duration-parse", "perl-timedate", "perl-try-tiny" ], "downloads": [ "https://cpan.metacpan.org/authors/id/A/AS/ASB/CHI-0.61.tar.gz" ], "homepages": [ "https://metacpan.org/pod/CHI" ], "licenses": [ 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], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-class-c3", "patches": [], "summary": "A pragma to use the C3 method resolution order algorithm\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/H/HA/HAARG/Class-C3-0.35.tar.gz" ], "version": "0.35" } ] }, "perl-class-c3-adopt-next": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-module-build-tiny", "perl-mro-compat", "perl-test-exception" ], "downloads": [ "https://cpan.metacpan.org/authors/id/E/ET/ETHER/Class-C3-Adopt-NEXT-0.14.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Class::C3::Adopt::NEXT" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-class-c3-adopt-next", "patches": [], "summary": "Make NEXT suck less\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/E/ET/ETHER/Class-C3-Adopt-NEXT-0.14.tar.gz" ], "version": "0.14" } ] }, 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A predicate object is an object that\nencapsulates conditions.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/A/AY/AYATES/data/Data-Predicate-2.1.1.tar.gz" ], "version": "2.1.1" } ] }, "perl-data-stag": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "perl", "perl-io-string" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/C/CM/CMUNGALL/Data-Stag-0.14.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Data::Stag" ], "licenses": [], "maintainers": [], "name": "perl-data-stag", "patches": [], "summary": "Structured Tags datastructures\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/C/CM/CMUNGALL/Data-Stag-0.14.tar.gz" ], "version": "0.14" } ] }, "perl-data-uuid": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/R/RJ/RJBS/Data-UUID-1.226.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Data::UUID" ], "licenses": [ "BSD" ], "maintainers": [ "EbiArnie" ], "name": "perl-data-uuid", "patches": [], "summary": "Globally/Universally Unique Identifiers (GUIDs/UUIDs)\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/R/RJ/RJBS/Data-UUID-1.226.tar.gz" ], "version": "1.226" } ] }, "perl-data-visitor": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-moose", "perl-namespace-clean", "perl-test-needs", "perl-tie-toobject" ], "downloads": [ "https://cpan.metacpan.org/authors/id/E/ET/ETHER/Data-Visitor-0.32.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Data::Visitor" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-data-visitor", "patches": [], "summary": "Visitor style traversal of Perl data structures\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/E/ET/ETHER/Data-Visitor-0.32.tar.gz" ], "version": "0.32" } ] }, "perl-date-exception": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-moo", "perl-namespace-autoclean", "perl-throwable" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/MA/MANWAR/Date-Exception-0.08.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Date::Exception" ], "licenses": [ "Artistic-2.0" ], "maintainers": [ "EbiArnie" ], "name": "perl-date-exception", "patches": [], "summary": "Base exception package as Moo Role for Date::* packages.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/MA/MANWAR/Date-Exception-0.08.tar.gz" ], "version": "0.08" } ] }, "perl-date-manip": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/S/SB/SBECK/Date-Manip-6.91.tar.gz", "https://cpan.metacpan.org/authors/id/S/SB/SBECK/Date-Manip-6.82.tar.gz" ], "homepages": [ "https://metacpan.org/release/Date-Manip" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-date-manip", "patches": [], "summary": "Date::Manip - Date manipulation routines Date::Manip is a series of\nmodules designed to make any common date/time operation easy to do.\nOperations such as comparing two times, determining a date a given\namount of time from another, or parsing international times are all\neasily done. It deals with time as it is used in the Gregorian calendar\n(the one currently in use) with full support for time changes due to\ndaylight saving time.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/S/SB/SBECK/Date-Manip-6.82.tar.gz" ], "version": "6.82" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/S/SB/SBECK/Date-Manip-6.91.tar.gz" ], "version": "6.91" } ] }, "perl-date-utils": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-date-exception", "perl-moo", "perl-namespace-autoclean", "perl-term-ansicolor-markup" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/MA/MANWAR/Date-Utils-0.28.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Date::Utils" ], "licenses": [ "Artistic-2.0" ], "maintainers": [ "EbiArnie" ], "name": "perl-date-utils", "patches": [], "summary": "Common date functions as Moo Role.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/MA/MANWAR/Date-Utils-0.28.tar.gz" ], "version": "0.28" } ] }, "perl-datetime": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-cpan-meta-check", "perl-datetime-locale", "perl-datetime-timezone", "perl-dist-checkconflicts", "perl-namespace-autoclean", "perl-params-validationcompiler", "perl-specio", "perl-test-fatal", "perl-test-warnings", "perl-test-without-module", "perl-try-tiny" ], "downloads": [ "https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/DateTime-1.65.tar.gz" ], "homepages": [ "https://metacpan.org/pod/DateTime" ], "licenses": [ "Artistic-2.0" ], "maintainers": [ "EbiArnie" ], "name": "perl-datetime", "patches": [], "summary": "DateTime - A date and time object for Perl\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/DateTime-1.65.tar.gz" ], "version": "1.65" } ] }, "perl-datetime-format-builder": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-datetime", "perl-datetime-format-strptime", "perl-params-validate" ], "downloads": [ "https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/DateTime-Format-Builder-0.83.tar.gz" ], "homepages": [ "https://metacpan.org/pod/DateTime::Format::Builder" ], "licenses": [ "Artistic-2.0" ], "maintainers": [ "EbiArnie" ], "name": "perl-datetime-format-builder", "patches": [], "summary": "Create DateTime parser classes and objects.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/DateTime-Format-Builder-0.83.tar.gz" ], "version": "0.83" } ] }, "perl-datetime-format-iso8601": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-datetime", "perl-datetime-format-builder", "perl-namespace-autoclean", "perl-params-validationcompiler", "perl-specio", "perl-test2-suite" ], "downloads": [ "https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/DateTime-Format-ISO8601-0.16.tar.gz" ], "homepages": [ "https://metacpan.org/pod/DateTime::Format::ISO8601" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-datetime-format-iso8601", "patches": [], "summary": "Parses ISO8601 formats\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/DateTime-Format-ISO8601-0.16.tar.gz" ], "version": "0.16" } ] }, "perl-datetime-format-mysql": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-datetime", "perl-datetime-format-builder" ], "downloads": [ "https://cpan.metacpan.org/authors/id/X/XM/XMIKEW/DateTime-Format-MySQL-0.08.tar.gz" ], "homepages": [ "https://metacpan.org/pod/DateTime::Format::MySQL" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-datetime-format-mysql", "patches": [], "summary": "Parse and format MySQL dates and times\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/X/XM/XMIKEW/DateTime-Format-MySQL-0.08.tar.gz" ], "version": "0.08" } ] }, "perl-datetime-format-oracle": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-convert-nls-date-format", "perl-datetime", "perl-datetime-format-builder" ], "downloads": [ "https://cpan.metacpan.org/authors/id/K/KO/KOLIBRIE/DateTime-Format-Oracle-0.06.tar.gz" ], "homepages": [ "https://metacpan.org/pod/DateTime::Format::Oracle" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-datetime-format-oracle", "patches": [], "summary": "Parse and format Oracle dates and timestamps\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/K/KO/KOLIBRIE/DateTime-Format-Oracle-0.06.tar.gz" ], "version": "0.06" } ] }, "perl-datetime-format-pg": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-datetime", "perl-datetime-format-builder", "perl-datetime-timezone", "perl-module-build-tiny" ], "downloads": [ "https://cpan.metacpan.org/authors/id/D/DM/DMAKI/DateTime-Format-Pg-0.16014.tar.gz" ], "homepages": [ "https://metacpan.org/pod/DateTime::Format::Pg" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-datetime-format-pg", "patches": [], "summary": "Parse and format PostgreSQL dates and times\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DM/DMAKI/DateTime-Format-Pg-0.16014.tar.gz" ], "version": "0.16014" } ] }, "perl-datetime-format-strptime": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-datetime", "perl-datetime-locale", "perl-datetime-timezone", "perl-params-validationcompiler", "perl-specio", "perl-test-fatal", "perl-test-warnings", "perl-try-tiny" ], "downloads": [ "https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/DateTime-Format-Strptime-1.79.tar.gz" ], "homepages": [ "https://metacpan.org/pod/DateTime::Format::Strptime" ], "licenses": [ "Artistic-2.0" ], "maintainers": [ "EbiArnie" ], "name": "perl-datetime-format-strptime", "patches": [], "summary": "Parse and format strp and strf time patterns\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/DateTime-Format-Strptime-1.79.tar.gz" ], "version": "1.79" } ] }, "perl-datetime-locale": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-cpan-meta-check", "perl-dist-checkconflicts", "perl-file-sharedir", "perl-file-sharedir-install", "perl-ipc-system-simple", "perl-namespace-autoclean", "perl-params-validationcompiler", "perl-path-tiny", "perl-specio", "perl-test-file-sharedir", "perl-test2-plugin-nowarnings", "perl-test2-suite" ], "downloads": [ "https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/DateTime-Locale-1.40.tar.gz" ], "homepages": [ "https://metacpan.org/pod/DateTime::Locale" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [ "EbiArnie" ], "name": "perl-datetime-locale", "patches": [], "summary": "DateTime::Locale - Localization support for DateTime.pm\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/DateTime-Locale-1.40.tar.gz" ], "version": "1.40" } ] }, "perl-datetime-timezone": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-class-singleton", "perl-module-runtime", "perl-namespace-autoclean", "perl-params-validationcompiler", "perl-specio", "perl-test-fatal", "perl-test-requires", "perl-try-tiny" ], "downloads": [ "https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/DateTime-TimeZone-2.60.tar.gz" ], "homepages": [ "https://metacpan.org/pod/DateTime::TimeZone" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [ "EbiArnie" ], "name": "perl-datetime-timezone", "patches": [], "summary": "DateTime::TimeZone - Time zone object base class and factory\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/DateTime-TimeZone-2.60.tar.gz" ], "version": "2.60" } ] }, "perl-db-file": { "alias": [], "categories": [], "dependencies": [ "berkeley-db", "c", "gmake", "perl", "perl-extutils-makemaker" ], "downloads": [ "https://cpan.metacpan.org/authors/id/P/PM/PMQS/DB_File-1.859.tar.gz", "https://cpan.metacpan.org/authors/id/P/PM/PMQS/DB_File-1.858.tar.gz", "https://cpan.metacpan.org/authors/id/P/PM/PMQS/DB_File-1.840.tar.gz" ], "homepages": [ "https://metacpan.org/pod/DB_File" ], "licenses": [], "maintainers": [], "name": "perl-db-file", "patches": [], "summary": "DB_File is a module which allows Perl programs to make use of the\nfacilities provided by Berkeley DB version 1.x (if you have a newer\nversion of DB, see \"Using DB_File with Berkeley DB version 2 or\ngreater\"). It is assumed that you have a copy of the Berkeley DB manual\npages at hand when reading this documentation. The interface defined\nhere mirrors the Berkeley DB interface closely.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/P/PM/PMQS/DB_File-1.840.tar.gz" ], "version": "1.840" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/P/PM/PMQS/DB_File-1.858.tar.gz" ], "version": "1.858" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/P/PM/PMQS/DB_File-1.859.tar.gz" ], "version": "1.859" } ] }, "perl-dbd-mysql": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "mysql", "perl", "perl-dbi", "perl-devel-checklib", "perl-test-deep" ], "downloads": [ "https://cpan.metacpan.org/authors/id/D/DV/DVEEDEN/DBD-mysql-5.005.tar.gz", "https://cpan.metacpan.org/authors/id/D/DV/DVEEDEN/DBD-mysql-4.052.tar.gz", "https://cpan.metacpan.org/authors/id/D/DV/DVEEDEN/DBD-mysql-4.050.tar.gz", "https://search.cpan.org/CPAN/authors/id/M/MI/MICHIELB/DBD-mysql-4.043.tar.gz" ], "homepages": [ "https://metacpan.org/pod/DBD::mysql" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-dbd-mysql", "patches": [], "summary": "MySQL driver for the Perl5 Database Interface (DBI)\n", "version": [ { "downloads": [ "https://search.cpan.org/CPAN/authors/id/M/MI/MICHIELB/DBD-mysql-4.043.tar.gz" ], "version": "4.043" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DV/DVEEDEN/DBD-mysql-4.050.tar.gz" ], "version": "4.050" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DV/DVEEDEN/DBD-mysql-4.052.tar.gz" ], "version": "4.052" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DV/DVEEDEN/DBD-mysql-5.005.tar.gz" ], "version": "5.005" } ] }, "perl-dbd-oracle": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "oracle-instant-client", "perl", "perl-dbi", "perl-test-nowarnings" ], "downloads": [ "https://cpan.metacpan.org/authors/id/Z/ZA/ZARQUON/DBD-Oracle-1.83.tar.gz" ], "homepages": [ "https://metacpan.org/pod/DBD::Oracle" ], "licenses": [], "maintainers": [ "EbiArnie" ], "name": "perl-dbd-oracle", "patches": [], "summary": "Oracle database driver for the DBI module\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/Z/ZA/ZARQUON/DBD-Oracle-1.83.tar.gz" ], "version": "1.83" } ] }, "perl-dbd-pg": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "perl", "perl-dbi", "postgresql" ], "downloads": [ "https://cpan.metacpan.org/authors/id/T/TU/TURNSTEP/DBD-Pg-3.18.0.tar.gz", "https://cpan.metacpan.org/authors/id/T/TU/TURNSTEP/DBD-Pg-3.16.1.tar.gz", "https://cpan.metacpan.org/authors/id/T/TU/TURNSTEP/DBD-Pg-3.10.0.tar.gz" ], "homepages": [ "https://metacpan.org/pod/DBD::Pg" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-dbd-pg", "patches": [], "summary": "DBD::Pg is a Perl module that works with the DBI module to provide\naccess to PostgreSQL databases.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/T/TU/TURNSTEP/DBD-Pg-3.10.0.tar.gz" ], "version": "3.10.0" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/T/TU/TURNSTEP/DBD-Pg-3.16.1.tar.gz" ], "version": "3.16.1" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/T/TU/TURNSTEP/DBD-Pg-3.18.0.tar.gz" ], "version": "3.18.0" } ] }, "perl-dbd-sqlite": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "perl", "perl-dbi" ], "downloads": [ "https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI/DBD-SQLite-1.74.tar.gz", "https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI/DBD-SQLite-1.72.tar.gz", "https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI/DBD-SQLite-1.59_01.tar.gz", "https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI/DBD-SQLite-1.58.tar.gz", "https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI/DBD-SQLite-1.57_01.tar.gz", "https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI/DBD-SQLite-1.56.tar.gz" ], "homepages": [ "https://metacpan.org/pod/DBD::SQLite" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-dbd-sqlite", "patches": [], "summary": "DBD::SQLite - Self-contained RDBMS in a DBI Driver\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI/DBD-SQLite-1.56.tar.gz" ], "version": "1.56" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI/DBD-SQLite-1.57_01.tar.gz" ], "version": "1.57_01" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI/DBD-SQLite-1.58.tar.gz" ], "version": "1.58" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI/DBD-SQLite-1.59_01.tar.gz" ], "version": "1.59_01" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI/DBD-SQLite-1.72.tar.gz" ], "version": "1.72" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI/DBD-SQLite-1.74.tar.gz" ], "version": "1.74" } ] }, "perl-dbi": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/H/HM/HMBRAND/DBI-1.645.tgz" ], "homepages": [ "https://dbi.perl.org/" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-dbi", "patches": [], "summary": "The DBI is the standard database interface module for Perl. 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Secondly Error is a base\nclass for errors/exceptions that can either be thrown, for subsequent\ncatch, or can simply be recorded.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/Error-0.17028.tar.gz" ], "version": "0.17028" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/Error-0.17029.tar.gz" ], "version": "0.17029" } ] }, "perl-eval-closure": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DO/DOY/Eval-Closure-0.14.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Eval::Closure" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-eval-closure", "patches": [], "summary": "Safely and cleanly create closures via string eval\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DO/DOY/Eval-Closure-0.14.tar.gz" ], "version": "0.14" } ] }, "perl-exception-class": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-class-data-inheritable", "perl-devel-stacktrace" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DR/DROLSKY/Exception-Class-1.45.tar.gz", "http://search.cpan.org/CPAN/authors/id/D/DR/DROLSKY/Exception-Class-1.43.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Exception::Class" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-exception-class", "patches": [], "summary": "A module that allows you to declare real exception classes in Perl\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DR/DROLSKY/Exception-Class-1.43.tar.gz" ], "version": "1.43" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DR/DROLSKY/Exception-Class-1.45.tar.gz" ], "version": "1.45" } ] }, "perl-exporter-auto": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-b-hooks-endofscope", "perl-sub-identify" ], "downloads": [ "https://cpan.metacpan.org/authors/id/N/NE/NEILB/Exporter-Auto-0.04.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Exporter::Auto" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-exporter-auto", "patches": [], "summary": "Export all public functions from your package\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/N/NE/NEILB/Exporter-Auto-0.04.tar.gz" ], "version": "0.04" } ] }, "perl-exporter-lite": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/N/NE/NEILB/Exporter-Lite-0.09.tar.gz", "https://cpan.metacpan.org/authors/id/N/NE/NEILB/Exporter-Lite-0.08.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Exporter::Lite" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-exporter-lite", "patches": [], "summary": "Exporter::Lite is an alternative to Exporter, intended to provide a\nlightweight subset of the most commonly-used functionality. It supports\nimport(), @EXPORT and @EXPORT_OK and not a whole lot else.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/N/NE/NEILB/Exporter-Lite-0.08.tar.gz" ], "version": "0.08" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/N/NE/NEILB/Exporter-Lite-0.09.tar.gz" ], "version": "0.09" } ] }, "perl-exporter-tiny": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/T/TO/TOBYINK/Exporter-Tiny-1.006002.tar.gz", "http://search.cpan.org/CPAN/authors/id/T/TO/TOBYINK/Exporter-Tiny-1.006001.tar.gz", "http://search.cpan.org/CPAN/authors/id/T/TO/TOBYINK/Exporter-Tiny-1.006000.tar.gz", "http://search.cpan.org/CPAN/authors/id/T/TO/TOBYINK/Exporter-Tiny-1.000000.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Exporter::Tiny" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-exporter-tiny", "patches": [], "summary": "An exporter with the features of Sub::Exporter but only core\ndependencies\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/T/TO/TOBYINK/Exporter-Tiny-1.000000.tar.gz" ], "version": "1.000000" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/T/TO/TOBYINK/Exporter-Tiny-1.006000.tar.gz" ], "version": "1.006000" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/T/TO/TOBYINK/Exporter-Tiny-1.006001.tar.gz" ], "version": "1.006001" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/T/TO/TOBYINK/Exporter-Tiny-1.006002.tar.gz" ], "version": "1.006002" } ] }, "perl-extutils-config": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/L/LE/LEONT/ExtUtils-Config-0.010.tar.gz", "https://cpan.metacpan.org/authors/id/L/LE/LEONT/ExtUtils-Config-0.009.tar.gz", "https://cpan.metacpan.org/authors/id/L/LE/LEONT/ExtUtils-Config-0.008.tar.gz" ], "homepages": [ "https://metacpan.org/pod/ExtUtils::Config" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-extutils-config", "patches": [], "summary": "ExtUtils::Config - A wrapper for perl's configuration\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/L/LE/LEONT/ExtUtils-Config-0.008.tar.gz" ], "version": "0.008" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/L/LE/LEONT/ExtUtils-Config-0.009.tar.gz" ], "version": "0.009" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/L/LE/LEONT/ExtUtils-Config-0.010.tar.gz" ], "version": "0.010" } ] }, "perl-extutils-depends": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/X/XA/XAOC/ExtUtils-Depends-0.8001.tar.gz", "http://search.cpan.org/CPAN/authors/id/X/XA/XAOC/ExtUtils-Depends-0.405.tar.gz" ], "homepages": [ "https://metacpan.org/pod/ExtUtils::Depends" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-extutils-depends", "patches": [], "summary": "Easily build XS extensions that depend on XS extensions\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/X/XA/XAOC/ExtUtils-Depends-0.405.tar.gz" ], "version": "0.405" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/X/XA/XAOC/ExtUtils-Depends-0.8001.tar.gz" ], "version": "0.8001" } ] }, "perl-extutils-helpers": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/L/LE/LEONT/ExtUtils-Helpers-0.026.tar.gz" ], "homepages": [ "https://metacpan.org/pod/ExtUtils::Helpers" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-extutils-helpers", "patches": [], "summary": "ExtUtils::Helpers - Various portability utilities for module builders\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/L/LE/LEONT/ExtUtils-Helpers-0.026.tar.gz" ], "version": "0.026" } ] }, "perl-extutils-installpaths": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-extutils-config" ], "downloads": [ "https://cpan.metacpan.org/authors/id/L/LE/LEONT/ExtUtils-InstallPaths-0.013.tar.gz", "https://cpan.metacpan.org/authors/id/L/LE/LEONT/ExtUtils-InstallPaths-0.012.tar.gz" ], "homepages": [ "https://metacpan.org/pod/ExtUtils::InstallPaths" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-extutils-installpaths", "patches": [], "summary": "ExtUtils::InstallPaths - Build.PL install path logic made easy\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/L/LE/LEONT/ExtUtils-InstallPaths-0.012.tar.gz" ], "version": "0.012" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/L/LE/LEONT/ExtUtils-InstallPaths-0.013.tar.gz" ], "version": "0.013" } ] }, "perl-extutils-makemaker": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/B/BI/BINGOS/ExtUtils-MakeMaker-7.70.tar.gz", "http://search.cpan.org/CPAN/authors/id/B/BI/BINGOS/ExtUtils-MakeMaker-7.68.tar.gz", "http://search.cpan.org/CPAN/authors/id/B/BI/BINGOS/ExtUtils-MakeMaker-7.24.tar.gz" ], "homepages": [ "https://github.com/Perl-Toolchain-Gang/ExtUtils-MakeMaker" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-extutils-makemaker", "patches": [], "summary": "ExtUtils::MakeMaker - Create a module Makefile. This utility is designed\nto write a Makefile for an extension module from a Makefile.PL. It is\nbased on the Makefile.SH model provided by Andy Dougherty and the\nperl5-porters.\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/B/BI/BINGOS/ExtUtils-MakeMaker-7.24.tar.gz" ], "version": "7.24" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/B/BI/BINGOS/ExtUtils-MakeMaker-7.68.tar.gz" ], "version": "7.68" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/B/BI/BINGOS/ExtUtils-MakeMaker-7.70.tar.gz" ], "version": "7.70" } ] }, "perl-extutils-pkgconfig": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "pkgconfig" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/X/XA/XAOC/ExtUtils-PkgConfig-1.16.tar.gz" ], "homepages": [ "https://metacpan.org/pod/ExtUtils::PkgConfig" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-extutils-pkgconfig", "patches": [], "summary": "simplistic interface to pkg-config\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/X/XA/XAOC/ExtUtils-PkgConfig-1.16.tar.gz" ], "version": "1.16" } ] }, "perl-ffi-checklib": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/P/PL/PLICEASE/FFI-CheckLib-0.31.tar.gz", "https://cpan.metacpan.org/authors/id/P/PL/PLICEASE/FFI-CheckLib-0.25.tar.gz" ], "homepages": [ "https://metacpan.org/pod/FFI::CheckLib" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-ffi-checklib", "patches": [], "summary": "This module checks whether a particular dynamic library is available for\nFFI to use. It is modeled heavily on Devel::CheckLib, but will find\ndynamic libraries even when development packages are not installed. It\nalso provides a find_lib function that will return the full path to the\nfound dynamic library, which can be feed directly into FFI::Platypus or\nanother FFI system.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/P/PL/PLICEASE/FFI-CheckLib-0.25.tar.gz" ], "version": "0.25" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/P/PL/PLICEASE/FFI-CheckLib-0.31.tar.gz" ], "version": "0.31" } ] }, "perl-file-changenotify": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-module-pluggable", "perl-module-runtime", "perl-moo", "perl-namespace-autoclean", "perl-test-requires", "perl-test-without-module", "perl-test2-suite", "perl-type-tiny" ], "downloads": [ "https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/File-ChangeNotify-0.31.tar.gz" ], "homepages": [ "https://metacpan.org/pod/File::ChangeNotify" ], "licenses": [ "Artistic-2.0" ], "maintainers": [ "EbiArnie" ], "name": "perl-file-changenotify", "patches": [], "summary": "Watch for changes to files, cross-platform style\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/File-ChangeNotify-0.31.tar.gz" ], "version": "0.31" } ] }, "perl-file-chdir": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/File-chdir-0.1011.tar.gz" ], "homepages": [ "https://metacpan.org/pod/File::chdir" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-file-chdir", "patches": [], "summary": "Perl's chdir() has the unfortunate problem of being very, very, very\nglobal. If any part of your program calls chdir() or if any library you\nuse calls chdir(), it changes the current working directory for the\n*whole* program. This sucks. File::chdir gives you an alternative, $CWD\nand @CWD. These two variables combine all the power of chdir(),\nFile::Spec and Cwd.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/File-chdir-0.1011.tar.gz" ], "version": "0.1011" } ] }, "perl-file-copy-recursive": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DM/DMUEY/File-Copy-Recursive-0.45.tar.gz", "http://search.cpan.org/CPAN/authors/id/D/DM/DMUEY/File-Copy-Recursive-0.40.tar.gz", "http://search.cpan.org/CPAN/authors/id/D/DM/DMUEY/File-Copy-Recursive-0.38.tar.gz" ], "homepages": [ "https://metacpan.org/pod/File::Copy::Recursive" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-file-copy-recursive", "patches": [], "summary": "Perl extension for recursively copying files and directories\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DM/DMUEY/File-Copy-Recursive-0.38.tar.gz" ], "version": "0.38" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DM/DMUEY/File-Copy-Recursive-0.40.tar.gz" ], "version": "0.40" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DM/DMUEY/File-Copy-Recursive-0.45.tar.gz" ], "version": "0.45" } ] }, "perl-file-find-rule": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-extutils-makemaker", "perl-number-compare", "perl-text-glob" ], "downloads": [ "https://cpan.metacpan.org/authors/id/R/RC/RCLAMP/File-Find-Rule-0.34.tar.gz" ], "homepages": [ "https://metacpan.org/pod/File::Find::Rule" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-file-find-rule", "patches": [], "summary": "File::Find::Rule is a friendlier interface to File::Find. It allows you\nto build rules which specify the desired files and directories.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/R/RC/RCLAMP/File-Find-Rule-0.34.tar.gz" ], "version": "0.34" } ] }, "perl-file-grep": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-extutils-makemaker" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/MN/MNEYLON/File-Grep-0.02.tar.gz" ], "homepages": [ "https://metacpan.org/pod/File::Grep" ], "licenses": [], "maintainers": [], "name": "perl-file-grep", "patches": [], "summary": "File::Grep - Find matches to a pattern in a series of files and related\nfunctions\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/MN/MNEYLON/File-Grep-0.02.tar.gz" ], "version": "0.02" } ] }, "perl-file-homedir": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-file-which" ], "downloads": [ "https://cpan.metacpan.org/authors/id/R/RE/REHSACK/File-HomeDir-1.006.tar.gz", "https://cpan.metacpan.org/authors/id/R/RE/REHSACK/File-HomeDir-1.004.tar.gz" ], "homepages": [ "https://metacpan.org/pod/File::HomeDir" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-file-homedir", "patches": [], "summary": "Find your home and other directories on any platform\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/R/RE/REHSACK/File-HomeDir-1.004.tar.gz" ], "version": "1.004" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/R/RE/REHSACK/File-HomeDir-1.006.tar.gz" ], "version": "1.006" } ] }, "perl-file-listing": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-http-date" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/File-Listing-6.16.tar.gz", "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/File-Listing-6.04.tar.gz" ], "homepages": [ "https://metacpan.org/pod/File::Listing" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-file-listing", "patches": [], "summary": "Parse directory listing\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/File-Listing-6.04.tar.gz" ], "version": "6.04" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/File-Listing-6.16.tar.gz" ], "version": "6.16" } ] }, "perl-file-pushd": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DA/DAGOLDEN/File-pushd-1.016.tar.gz", "http://search.cpan.org/CPAN/authors/id/D/DA/DAGOLDEN/File-pushd-1.014.tar.gz" ], "homepages": [ "https://metacpan.org/pod/File::pushd" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "perl-file-pushd", "patches": [], "summary": "Change directory temporarily for a limited scope\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DA/DAGOLDEN/File-pushd-1.014.tar.gz" ], "version": "1.014" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DA/DAGOLDEN/File-pushd-1.016.tar.gz" ], "version": "1.016" } ] }, "perl-file-remove": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-module-build" ], "downloads": [ "https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/File-Remove-1.61.tar.gz" ], "homepages": [ "https://metacpan.org/pod/File::Remove" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-file-remove", "patches": [], "summary": "File::Remove - Remove files and directories\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/File-Remove-1.61.tar.gz" ], "version": "1.61" } ] }, "perl-file-sharedir": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-class-inspector", "perl-file-sharedir-install" ], "downloads": [ "https://cpan.metacpan.org/authors/id/R/RE/REHSACK/File-ShareDir-1.118.tar.gz" ], "homepages": [ "https://metacpan.org/pod/File::ShareDir" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [ "EbiArnie" ], "name": "perl-file-sharedir", "patches": [], "summary": "File::ShareDir - Locate per-dist and per-module shared files\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/R/RE/REHSACK/File-ShareDir-1.118.tar.gz" ], "version": "1.118" } ] }, "perl-file-sharedir-install": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-module-build" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/E/ET/ETHER/File-ShareDir-Install-0.14.tar.gz", "http://search.cpan.org/CPAN/authors/id/E/ET/ETHER/File-ShareDir-Install-0.11.tar.gz" ], "homepages": [ "https://metacpan.org/pod/File::ShareDir::Install" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-file-sharedir-install", "patches": [], "summary": "Install shared files\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/E/ET/ETHER/File-ShareDir-Install-0.11.tar.gz" ], "version": "0.11" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/E/ET/ETHER/File-ShareDir-Install-0.14.tar.gz" ], "version": "0.14" } ] }, "perl-file-slurp": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/C/CA/CAPOEIRAB/File-Slurp-9999.32.tar.gz" ], "homepages": [ "https://metacpan.org/pod/File::Slurp" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-file-slurp", "patches": [], "summary": "File::Slurp - Simple and Efficient Reading/Writing/Modifying of Complete\nFiles\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/C/CA/CAPOEIRAB/File-Slurp-9999.32.tar.gz" ], "version": "9999.32" } ] }, "perl-file-slurp-tiny": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/L/LE/LEONT/File-Slurp-Tiny-0.004.tar.gz" ], "homepages": [ "https://metacpan.org/pod/File::Slurp::Tiny" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-file-slurp-tiny", "patches": [], "summary": "A simple, sane and efficient file slurper\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/L/LE/LEONT/File-Slurp-Tiny-0.004.tar.gz" ], "version": "0.004" } ] }, "perl-file-slurper": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/L/LE/LEONT/File-Slurper-0.014.tar.gz", "http://search.cpan.org/CPAN/authors/id/L/LE/LEONT/File-Slurper-0.011.tar.gz" ], "homepages": [ "https://metacpan.org/pod/File::Slurper" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-file-slurper", "patches": [], "summary": "A simple, sane and efficient module to slurp a file\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/L/LE/LEONT/File-Slurper-0.011.tar.gz" ], "version": "0.011" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/L/LE/LEONT/File-Slurper-0.014.tar.gz" ], "version": "0.014" } ] }, "perl-file-spec": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/K/KW/KWILLIAMS/File-Spec-0.90.tar.gz" ], "homepages": [ "https://metacpan.org/pod/File::Spec" ], "licenses": [], "maintainers": [], "name": "perl-file-spec", "patches": [], "summary": "File::Spec - Perl extension for portably performing operations on file\nnames\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/K/KW/KWILLIAMS/File-Spec-0.90.tar.gz" ], "version": "0.90" } ] }, "perl-file-temp": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/E/ET/ETHER/File-Temp-0.2311.tar.gz" ], "homepages": [ "https://metacpan.org/pod/File::Temp" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-file-temp", "patches": [], "summary": "File::Temp - return name and handle of a temporary file safely.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/E/ET/ETHER/File-Temp-0.2311.tar.gz" ], "version": "0.2311" } ] }, "perl-file-which": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/P/PL/PLICEASE/File-Which-1.27.tar.gz", "http://search.cpan.org/CPAN/authors/id/P/PL/PLICEASE/File-Which-1.22.tar.gz" ], "homepages": [ "http://cpansearch.perl.org/src/PLICEASE/File-Which-1.22/lib/File/Which.pm" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-file-which", "patches": [], "summary": "Perl implementation of the which utility as an API\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/P/PL/PLICEASE/File-Which-1.22.tar.gz" ], "version": "1.22" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/P/PL/PLICEASE/File-Which-1.27.tar.gz" ], "version": "1.27" } ] }, "perl-filesys-notify-simple": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-test-sharedfork" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA/Filesys-Notify-Simple-0.14.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Filesys::Notify::Simple" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-filesys-notify-simple", "patches": [], "summary": "Simple and dumb file system watcher\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA/Filesys-Notify-Simple-0.14.tar.gz" ], "version": "0.14" } ] }, "perl-font-ttf": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/B/BH/BHALLISSY/Font-TTF-1.06.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Font::TTF" ], "licenses": [], "maintainers": [], "name": "perl-font-ttf", "patches": [], "summary": "Perl module for TrueType Font hacking\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/B/BH/BHALLISSY/Font-TTF-1.06.tar.gz" ], "version": "1.06" } ] }, "perl-forks": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-acme-damn", "perl-devel-symdump", "perl-list-moreutils", "perl-sys-sigaction" ], "downloads": [ "https://cpan.metacpan.org/authors/id/R/RY/RYBSKEJ/forks-0.36.tar.gz" ], "homepages": [ "https://metacpan.org/pod/forks" ], "licenses": [], "maintainers": [], "name": "perl-forks", "patches": [], "summary": "The \"forks\" pragma allows a developer to use threads without having to\nhave a threaded perl, or to even run 5.8.0 or higher.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/R/RY/RYBSKEJ/forks-0.36.tar.gz" ], "version": "0.36" } ] }, "perl-fth": { "alias": [], "categories": [ "detectable" ], "dependencies": [ "c", "coreutils", "dos2unix", "emacs", "fortran", "hevea", "perl", "perl-cgi", "texlive" ], "downloads": [ "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.529.tgz", "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.527.tgz", "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.526.tgz", "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.525.tgz", "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.524.tgz", "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.523.tgz", "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.522.tgz", "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.521.tgz", "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.520.tgz", "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.519.tgz", "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.518.tgz", "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.517.tgz" ], "homepages": [ "https://sourceforge.net/projects/ftagshtml/" ], "licenses": [], "maintainers": [ "cessenat" ], "name": "perl-fth", "patches": [ "fth-shebang.patch when @0.517:0.522", "fth-shebang2.patch when @0.517:0.522" ], "summary": "Ftagshtml is a Fortran (and simple C) to HTML browsing, resolves static\ninterface overload. It can handle some LaTeX comments inside the source\nfiles. It only needs to be put somewhere into your disk since it uses\nPerl. It also provides javatex2.pl initmak.pl getin.pl tex3ht.pl and\nview.pl: (1) javatex2 complements latex2html to make nice browsing, (2)\ninitmak makes fortran 90 dependencies, either full deps or partial (when\ninterface is not modified it is silly to recompile everything) (3) getin\nis an advanced search tool for Fortran variables and calls, (4) view.pl\nis used for CGI search when source is on http server.\n", "version": [ { "downloads": [ "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.517.tgz" ], "version": "0.517" }, { "downloads": [ "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.518.tgz" ], "version": "0.518" }, { "downloads": [ "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.519.tgz" ], "version": "0.519" }, { "downloads": [ "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.520.tgz" ], "version": "0.520" }, { "downloads": [ "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.521.tgz" ], "version": "0.521" }, { "downloads": [ "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.522.tgz" ], "version": "0.522" }, { "downloads": [ "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.523.tgz" ], "version": "0.523" }, { "downloads": [ "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.524.tgz" ], "version": "0.524" }, { "downloads": [ "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.525.tgz" ], "version": "0.525" }, { "downloads": [ "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.526.tgz" ], "version": "0.526" }, { "downloads": [ "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.527.tgz" ], "version": "0.527" }, { "downloads": [ "https://downloads.sourceforge.net/project/ftagshtml/ftagshtml-0.529.tgz" ], "version": "0.529" } ] }, "perl-gd": { "alias": [], "categories": [], "dependencies": [ "gmake", "libgd", "perl", "perl-extutils-makemaker", "perl-extutils-pkgconfig", "perl-module-build" ], "downloads": [ "https://cpan.metacpan.org/authors/id/R/RU/RURBAN/GD-2.77.tar.gz" ], "homepages": [ "https://metacpan.org/pod/GD" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-gd", "patches": [], "summary": "Interface to Gd Graphics Library\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/L/LD/LDS/GD-2.53.tar.gz" ], "version": "2.53" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/R/RU/RURBAN/GD-2.77.tar.gz" ], "version": "2.77" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/R/RU/RURBAN/GD-2.81.tar.gz" ], "version": "2.81" } ] }, "perl-gdgraph": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-capture-tiny", "perl-gd", "perl-gdtextutil", "perl-test-exception" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/B/BW/BWARFIELD/GDGraph-1.4308.tar.gz" ], "homepages": [ "https://metacpan.org/pod/GD::Graph" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-gdgraph", "patches": [], "summary": "Graph Plotting Module for Perl 5\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/B/BW/BWARFIELD/GDGraph-1.4308.tar.gz" ], "version": "1.4308" } ] }, "perl-gdgraph-histogram": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/W/WH/WHIZDOG/GDGraph-histogram-1.1.tar.gz" ], "homepages": [ "https://metacpan.org/pod/GD::Graph::histogram" ], "licenses": [ "Artistic-1.0-cl8" ], "maintainers": [], "name": "perl-gdgraph-histogram", "patches": [], "summary": "GD::Graph::histogram extends the GD::Graph module to create histograms.\nThe module allow creation of count or percentage histograms.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/W/WH/WHIZDOG/GDGraph-histogram-1.1.tar.gz" ], "version": "1.1" } ] }, "perl-gdtextutil": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-gd" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/M/MV/MVERB/GDTextUtil-0.86.tar.gz" ], "homepages": [ "https://metacpan.org/pod/GD::Text" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-gdtextutil", "patches": [], "summary": "Text utilities for use with GD\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/M/MV/MVERB/GDTextUtil-0.86.tar.gz" ], "version": "0.86" } ] }, "perl-getopt-argvfile": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/J/JS/JSTENZEL/Getopt-ArgvFile-1.11.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Getopt::ArgvFile" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-getopt-argvfile", "patches": [], "summary": "Getopt::ArgvFile - 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Deprecated. 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"http://search.cpan.org/CPAN/authors/id/O/OA/OALDERS/HTTP-Cookies-6.10.tar.gz", "http://search.cpan.org/CPAN/authors/id/O/OA/OALDERS/HTTP-Cookies-6.04.tar.gz" ], "homepages": [ "https://metacpan.org/pod/HTTP::Cookies" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-http-cookies", "patches": [], "summary": "HTTP cookie jars\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/O/OA/OALDERS/HTTP-Cookies-6.04.tar.gz" ], "version": "6.04" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/O/OA/OALDERS/HTTP-Cookies-6.10.tar.gz" ], "version": "6.10" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/O/OA/OALDERS/HTTP-Cookies-6.11.tar.gz" ], "version": "6.11" } ] }, "perl-http-daemon": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-http-date", "perl-http-message", "perl-lwp-mediatypes", "perl-module-build-tiny" ], "downloads": [ 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"maintainers": [], "name": "perl-http-date", "patches": [], "summary": "Date conversion routines\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/HTTP-Date-6.02.tar.gz" ], "version": "6.02" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/HTTP-Date-6.06.tar.gz" ], "version": "6.06" } ] }, "perl-http-entity-parser": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-hash-multivalue", "perl-http-message", "perl-http-multipartparser", "perl-json-maybexs", "perl-module-build-tiny", "perl-stream-buffered", "perl-www-form-urlencoded" ], "downloads": [ "https://cpan.metacpan.org/authors/id/K/KA/KAZEBURO/HTTP-Entity-Parser-0.25.tar.gz" ], "homepages": [ "https://metacpan.org/pod/HTTP::Entity::Parser" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-http-entity-parser", "patches": [], "summary": "PSGI compliant HTTP Entity Parser\n", "version": [ { "downloads": 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GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-import-into", "patches": [], "summary": "Import packages into other packages\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/H/HA/HAARG/Import-Into-1.002005.tar.gz" ], "version": "1.002005" } ] }, "perl-inline": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-test-warn" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/I/IN/INGY/Inline-0.86.tar.gz", "http://search.cpan.org/CPAN/authors/id/I/IN/INGY/Inline-0.80.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Inline" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [], "name": "perl-inline", "patches": [], "summary": "Write Perl Subroutines in Other Programming Languages\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/I/IN/INGY/Inline-0.80.tar.gz" ], "version": "0.80" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/I/IN/INGY/Inline-0.86.tar.gz" ], "version": "0.86" } ] }, "perl-inline-c": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-file-copy-recursive", "perl-inline", "perl-parse-recdescent", "perl-pegex", "perl-yaml-libyaml" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/T/TI/TINITA/Inline-C-0.81.tar.gz", "http://search.cpan.org/CPAN/authors/id/T/TI/TINITA/Inline-C-0.78.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Inline::C" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-inline-c", "patches": [], "summary": "C Language Support for Inline\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/T/TI/TINITA/Inline-C-0.78.tar.gz" ], "version": "0.78" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/T/TI/TINITA/Inline-C-0.81.tar.gz" ], "version": "0.81" } ] }, "perl-io-all": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/F/FR/FREW/IO-All-0.87.tar.gz" ], "homepages": [ "https://metacpan.org/pod/distribution/IO-All/lib/IO/All.pod" ], "licenses": [ "Artistic-1.0" ], "maintainers": [], "name": "perl-io-all", "patches": [], "summary": "IO::All combines all of the best Perl IO modules into a single nifty\nobject oriented interface to greatly simplify your everyday Perl IO\nidioms. It exports a single function called io, which returns a new\nIO::All object. And that object can do it all! The IO::All object is a\nproxy for IO::File, IO::Dir, IO::Socket, Tie::File, File::Spec,\nFile::Path, File::MimeInfo and File::ReadBackwards; as well as all the\nDBM and MLDBM modules. You can use most of the methods found in these\nclasses and in IO::Handle (which they inherit from). IO::All adds dozens\nof other helpful idiomatic methods including file stat and manipulation\nfunctions. IO::All is pluggable, and modules like IO::All::LWP and\nIO::All::Mailto add even more functionality. Optionally, every IO::All\nobject can be tied to itself. This means that you can use most perl IO\nbuiltins on it: readline, <>, getc, print, printf, syswrite, sysread,\nclose.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/F/FR/FREW/IO-All-0.87.tar.gz" ], "version": "0.87" } ] }, "perl-io-compress": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-compress-raw-bzip2", "perl-compress-raw-zlib" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/P/PM/PMQS/IO-Compress-2.204.tar.gz", "http://search.cpan.org/CPAN/authors/id/P/PM/PMQS/IO-Compress-2.081.tar.gz" ], "homepages": [ "https://metacpan.org/pod/IO::Uncompress::AnyUncompress" ], "licenses": [], "maintainers": [], "name": "perl-io-compress", "patches": [], "summary": "A perl library for uncompressing gzip, zip, bzip2 or lzop file/buffer.\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/P/PM/PMQS/IO-Compress-2.081.tar.gz" ], "version": "2.081" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/P/PM/PMQS/IO-Compress-2.204.tar.gz" ], "version": "2.204" } ] }, "perl-io-html": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/C/CJ/CJM/IO-HTML-1.004.tar.gz", "http://search.cpan.org/CPAN/authors/id/C/CJ/CJM/IO-HTML-1.001.tar.gz" ], "homepages": [ "https://metacpan.org/pod/IO::HTML" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-io-html", "patches": [], "summary": "Open an HTML file with automatic charset detection.\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/C/CJ/CJM/IO-HTML-1.001.tar.gz" ], "version": "1.001" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/C/CJ/CJM/IO-HTML-1.004.tar.gz" ], "version": "1.004" } ] }, "perl-io-prompt": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-module-build", "perl-termreadkey", "perl-want" ], "downloads": [ "https://cpan.metacpan.org/authors/id/D/DC/DCONWAY/IO-Prompt-0.997004.tar.gz" ], "homepages": [ "https://metacpan.org/pod/IO::Prompt" ], "licenses": [], "maintainers": [], "name": "perl-io-prompt", "patches": [], "summary": "By default, this module exports a single function prompt. It prompts the\nuser to enter some input, and returns an object that represents the user\ninput. You may specify various flags to the function to affect its\nbehaviour; most notably, it defaults to automatically chomp the input,\nunless the -line flag is specified. Two other functions are exported at\nrequest: hand_print, which simulates hand-typing to the console; and\nget_input, which is the lower-level function that actually prompts the\nuser for a suitable input. Note that this is an interim re-release. A\nfull release with better documentation will follow in the near future.\nMeanwhile, please consult the examples directory from this module's CPAN\ndistribution to better understand how to make use of this module.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DC/DCONWAY/IO-Prompt-0.997004.tar.gz" ], "version": "0.997004" } ] }, "perl-io-sessiondata": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/P/PH/PHRED/IO-SessionData-1.03.tar.gz" ], "homepages": [ "https://metacpan.org/release/PHRED/IO-SessionData-1.03/source/lib/IO/SessionData.pm#PIO::SessionData" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-io-sessiondata", "patches": [], "summary": "A wrapper around a single IO::Socket object\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/P/PH/PHRED/IO-SessionData-1.03.tar.gz" ], "version": "1.03" } ] }, "perl-io-socket-ssl": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-net-ssleay" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/S/SU/SULLR/IO-Socket-SSL-2.089.tar.gz", "http://search.cpan.org/CPAN/authors/id/S/SU/SULLR/IO-Socket-SSL-2.085.tar.gz", "http://search.cpan.org/CPAN/authors/id/S/SU/SULLR/IO-Socket-SSL-2.052.tar.gz" ], "homepages": [ "https://metacpan.org/dist/IO-Socket-SSL/view/lib/IO/Socket/SSL.pod" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-io-socket-ssl", "patches": [], "summary": "SSL sockets with IO::Socket interface\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/S/SU/SULLR/IO-Socket-SSL-2.052.tar.gz" ], "version": "2.052" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/S/SU/SULLR/IO-Socket-SSL-2.085.tar.gz" ], "version": "2.085" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/S/SU/SULLR/IO-Socket-SSL-2.089.tar.gz" ], "version": "2.089" } ] }, "perl-io-string": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/IO-String-1.08.tar.gz" ], "homepages": [ "https://metacpan.org/pod/IO::String" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-io-string", "patches": [], "summary": "Emulate file interface for in-core strings\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/IO-String-1.08.tar.gz" ], "version": "1.08" } ] }, "perl-io-stringy": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/D/DS/DSKOLL/IO-stringy-2.113.tar.gz", "https://cpan.metacpan.org/authors/id/D/DS/DSKOLL/IO-stringy-2.111.tar.gz" ], "homepages": [ "https://metacpan.org/pod/IO::Stringy" ], "licenses": [], "maintainers": [], "name": "perl-io-stringy", "patches": [], "summary": "This toolkit primarily provides modules for performing both traditional\nand object-oriented i/o) on things other than normal filehandles; in\nparticular, IO::Scalar, IO::ScalarArray, and IO::Lines. In the more-\ntraditional IO::Handle front, we have IO::AtomicFile which may be used\nto painlessly create files which are updated atomically. And in the\n\"this-may-prove-useful\" corner, we have IO::Wrap, whose exported\nwraphandle() function will clothe anything that's not a blessed object\nin an IO::Handle-like wrapper... so you can just use OO syntax and stop\nworrying about whether your function's caller handed you a string, a\nglobref, or a FileHandle.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DS/DSKOLL/IO-stringy-2.111.tar.gz" ], "version": "2.111" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DS/DSKOLL/IO-stringy-2.113.tar.gz" ], "version": "2.113" } ] }, "perl-io-tty": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/T/TO/TODDR/IO-Tty-1.20.tar.gz", "https://cpan.metacpan.org/authors/id/T/TO/TODDR/IO-Tty-1.17.tar.gz", "https://cpan.metacpan.org/authors/id/T/TO/TODDR/IO-Tty-1.13_01.tar.gz" ], "homepages": [ "https://metacpan.org/pod/IO::Tty" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-io-tty", "patches": [], "summary": "IO::Tty is used internally by IO::Pty to create a pseudo-tty. You\nwouldn't want to use it directly except to import constants, use\nIO::Pty. For a list of importable constants, see IO::Tty::Constant.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/T/TO/TODDR/IO-Tty-1.13_01.tar.gz" ], "version": "1.13_01" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/T/TO/TODDR/IO-Tty-1.17.tar.gz" ], "version": "1.17" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/T/TO/TODDR/IO-Tty-1.20.tar.gz" ], "version": "1.20" } ] }, "perl-ipc-run": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-io-tty", "perl-readonly" ], "downloads": [ "https://cpan.metacpan.org/authors/id/T/TO/TODDR/IPC-Run-20231003.0.tar.gz", "https://cpan.metacpan.org/authors/id/T/TO/TODDR/IPC-Run-20220807.0.tar.gz", "https://cpan.metacpan.org/authors/id/T/TO/TODDR/IPC-Run-20180523.0.tar.gz" ], "homepages": [ "https://metacpan.org/pod/IPC::Run" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-ipc-run", "patches": [], "summary": "IPC::Run allows you to run and interact with child processes using\nfiles, pipes, and pseudo-ttys. Both system()-style and scripted usages\nare supported and may be mixed. Likewise, functional and OO API styles\nare both supported and may be mixed.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/T/TO/TODDR/IPC-Run-20180523.0.tar.gz" ], "version": "20180523.0" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/T/TO/TODDR/IPC-Run-20220807.0.tar.gz" ], "version": "20220807.0" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/T/TO/TODDR/IPC-Run-20231003.0.tar.gz" ], "version": "20231003.0" } ] }, "perl-ipc-run3": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/R/RJ/RJBS/IPC-Run3-0.049.tar.gz", "https://cpan.metacpan.org/authors/id/R/RJ/RJBS/IPC-Run3-0.048.tar.gz" ], "homepages": [ "https://metacpan.org/pod/IPC::Run3" ], "licenses": [], "maintainers": [ "EbiArnie" ], "name": "perl-ipc-run3", "patches": [], "summary": "Run a subprocess with input/ouput redirection\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/R/RJ/RJBS/IPC-Run3-0.048.tar.gz" ], "version": "0.048" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/R/RJ/RJBS/IPC-Run3-0.049.tar.gz" ], "version": "0.049" } ] }, "perl-ipc-sharelite": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/A/AN/ANDYA/IPC-ShareLite-0.17.tar.gz" ], "homepages": [ "https://metacpan.org/pod/IPC::ShareLite" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-ipc-sharelite", "patches": [], "summary": "Lightweight interface to shared memory\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/A/AN/ANDYA/IPC-ShareLite-0.17.tar.gz" ], "version": "0.17" } ] }, "perl-ipc-system-simple": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/J/JK/JKEENAN/IPC-System-Simple-1.30.tar.gz" ], "homepages": [ "https://metacpan.org/pod/IPC::System::Simple" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [ "EbiArnie" ], "name": "perl-ipc-system-simple", "patches": [], "summary": "Run commands simply, with detailed diagnostics\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/J/JK/JKEENAN/IPC-System-Simple-1.30.tar.gz" ], "version": "1.30" } ] }, "perl-javascript-minifier-xs": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-test-diaginc" ], "downloads": [ "https://cpan.metacpan.org/authors/id/G/GT/GTERMARS/JavaScript-Minifier-XS-0.15.tar.gz" ], "homepages": [ "https://metacpan.org/pod/JavaScript::Minifier::XS" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-javascript-minifier-xs", "patches": [], "summary": "XS based JavaScript minifier\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/G/GT/GTERMARS/JavaScript-Minifier-XS-0.15.tar.gz" ], "version": "0.15" } ] }, "perl-json": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-json-xs" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/I/IS/ISHIGAKI/JSON-4.10.tar.gz", "http://search.cpan.org/CPAN/authors/id/I/IS/ISHIGAKI/JSON-2.97001.tar.gz" ], "homepages": [ "https://metacpan.org/pod/JSON" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-json", "patches": [], "summary": "JSON (JavaScript Object Notation) encoder/decoder\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/I/IS/ISHIGAKI/JSON-2.97001.tar.gz" ], "version": "2.97001" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/I/IS/ISHIGAKI/JSON-4.10.tar.gz" ], "version": "4.10" } ] }, "perl-json-any": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-test-fatal", "perl-test-needs", "perl-test-warnings", "perl-test-without-module" ], "downloads": [ "https://cpan.metacpan.org/authors/id/E/ET/ETHER/JSON-Any-1.40.tar.gz" ], "homepages": [ "https://metacpan.org/pod/JSON::Any" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-json-any", "patches": [], "summary": "(DEPRECATED) Wrapper Class for the various JSON classes\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/E/ET/ETHER/JSON-Any-1.40.tar.gz" ], "version": "1.40" } ] }, "perl-json-maybexs": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-cpanel-json-xs", "perl-test-needs" ], "downloads": [ "https://cpan.metacpan.org/authors/id/E/ET/ETHER/JSON-MaybeXS-1.004005.tar.gz" ], "homepages": [ "https://metacpan.org/pod/JSON::MaybeXS" ], "licenses": [], "maintainers": [ "EbiArnie" ], "name": "perl-json-maybexs", "patches": [], "summary": "Use Cpanel::JSON::XS with a fallback to JSON::XS and JSON::PP\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/E/ET/ETHER/JSON-MaybeXS-1.004005.tar.gz" ], "version": "1.004005" } ] }, "perl-json-xs": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-canary-stability", "perl-common-sense", "perl-types-serialiser" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/ML/MLEHMANN/JSON-XS-4.03.tar.gz" ], "homepages": [ "https://metacpan.org/pod/JSON::XS" ], "licenses": [], "maintainers": [ "EbiArnie" ], "name": "perl-json-xs", "patches": [], "summary": "JSON serialising/deserialising, done correctly and fast\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/ML/MLEHMANN/JSON-XS-4.03.tar.gz" ], "version": "4.03" } ] }, "perl-kyotocabinet": { "alias": [], "categories": [], "dependencies": [ "gmake", "kyotocabinet", "lzo", "perl", "xz", "zlib-api" ], "downloads": [ "https://dbmx.net/kyotocabinet/perlpkg/kyotocabinet-perl-1.20.tar.gz" ], "homepages": [ "https://dbmx.net/kyotocabinet/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-kyotocabinet", "patches": [], "summary": "Kyoto Cabinet is a library of routines for managing a database.\n", "version": [ { "downloads": [ "https://dbmx.net/kyotocabinet/perlpkg/kyotocabinet-perl-1.20.tar.gz" ], "version": "1.20" } ] }, "perl-libwww-perl": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-clone", "perl-encode-locale", "perl-file-listing", "perl-html-parser", "perl-http-cookies", "perl-http-daemon", "perl-http-date", "perl-http-message", "perl-http-negotiate", "perl-lwp-mediatypes", "perl-net-http", "perl-try-tiny", "perl-uri", "perl-www-robotrules" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/O/OA/OALDERS/libwww-perl-6.68.tar.gz", "http://search.cpan.org/CPAN/authors/id/O/OA/OALDERS/libwww-perl-6.33.tar.gz", "http://search.cpan.org/CPAN/authors/id/O/OA/OALDERS/libwww-perl-6.29.tar.gz" ], "homepages": [ "https://github.com/libwww-perl/libwww-perl" ], "licenses": [ "Artistic-1.0" ], "maintainers": [], "name": "perl-libwww-perl", "patches": [], "summary": "The libwww-perl collection is a set of Perl modules which provides a\nsimple and consistent application programming interface to the World-\nWide Web. The main focus of the library is to provide classes and\nfunctions that allow you to write WWW clients.\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/O/OA/OALDERS/libwww-perl-6.29.tar.gz" ], "version": "6.29" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/O/OA/OALDERS/libwww-perl-6.33.tar.gz" ], "version": "6.33" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/O/OA/OALDERS/libwww-perl-6.68.tar.gz" ], "version": "6.68" } ] }, "perl-libxml-perl": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/K/KM/KMACLEOD/libxml-perl-0.08.tar.gz" ], "homepages": [ "https://metacpan.org/release/libxml-perl" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-libxml-perl", "patches": [], "summary": "libxml-perl is a collection of smaller Perl modules, scripts, and\ndocuments for working with XML in Perl. libxml-perl software works in\ncombination with XML::Parser, PerlSAX, XML::DOM, XML::Grove and others.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/K/KM/KMACLEOD/libxml-perl-0.08.tar.gz" ], "version": "0.08" } ] }, "perl-lingua-en-inflect": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/D/DC/DCONWAY/Lingua-EN-Inflect-1.905.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Lingua::EN::Inflect" ], "licenses": [], "maintainers": [ "EbiArnie" ], "name": "perl-lingua-en-inflect", "patches": [], "summary": "Convert singular to plural. Select \"a\" or \"an\".\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DC/DCONWAY/Lingua-EN-Inflect-1.905.tar.gz" ], "version": "1.905" } ] }, "perl-list-compare": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-capture-tiny" ], "downloads": [ "https://cpan.metacpan.org/authors/id/J/JK/JKEENAN/List-Compare-0.55.tar.gz" ], "homepages": [ "https://metacpan.org/pod/List::Compare" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-list-compare", "patches": [], "summary": "Compare elements of two or more lists\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/J/JK/JKEENAN/List-Compare-0.55.tar.gz" ], "version": "0.55" } ] }, "perl-list-moreutils": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-exporter-tiny", "perl-list-moreutils-xs" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/R/RE/REHSACK/List-MoreUtils-0.430.tar.gz", "http://search.cpan.org/CPAN/authors/id/R/RE/REHSACK/List-MoreUtils-0.428.tar.gz" ], "homepages": [ "https://metacpan.org/pod/List::MoreUtils" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "perl-list-moreutils", "patches": [], "summary": "Provide the stuff missing in List::Util\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/R/RE/REHSACK/List-MoreUtils-0.428.tar.gz" ], "version": "0.428" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/R/RE/REHSACK/List-MoreUtils-0.430.tar.gz" ], "version": "0.430" } ] }, "perl-list-moreutils-xs": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/R/RE/REHSACK/List-MoreUtils-XS-0.430.tar.gz", "https://cpan.metacpan.org/authors/id/R/RE/REHSACK/List-MoreUtils-XS-0.428.tar.gz" ], "homepages": [ "https://metacpan.org/pod/List::MoreUtils::XS" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "perl-list-moreutils-xs", "patches": [], "summary": "List::MoreUtils::XS is a backend for List::MoreUtils. Even if it's\npossible (because of user wishes) to have it practically independent\nfrom List::MoreUtils, it technically depend on List::MoreUtils. Since\nit's only a backend, the API is not public and can change without any\nwarning.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/R/RE/REHSACK/List-MoreUtils-XS-0.428.tar.gz" ], "version": "0.428" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/R/RE/REHSACK/List-MoreUtils-XS-0.430.tar.gz" ], "version": "0.430" } ] }, "perl-list-someutils": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-module-implementation", "perl-test-leaktrace" ], "downloads": [ "https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/List-SomeUtils-0.59.tar.gz" ], "homepages": [ "https://metacpan.org/pod/List::SomeUtils" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-list-someutils", "patches": [], "summary": "Provide the stuff missing in List::Util\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/List-SomeUtils-0.59.tar.gz" ], "version": "0.59" } ] }, "perl-log-any": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/P/PR/PREACTION/Log-Any-1.717.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Log::Any" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [ "EbiArnie" ], "name": "perl-log-any", "patches": [], "summary": "Bringing loggers and listeners together\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/P/PR/PREACTION/Log-Any-1.717.tar.gz" ], "version": "1.717" } ] }, "perl-log-any-adapter-callback": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-log-any" ], "downloads": [ "https://cpan.metacpan.org/authors/id/P/PE/PERLANCAR/Log-Any-Adapter-Callback-0.102.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Log::Any::Adapter::Callback" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-log-any-adapter-callback", "patches": [], "summary": "Send Log::Any logs to a subroutine\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/P/PE/PERLANCAR/Log-Any-Adapter-Callback-0.102.tar.gz" ], "version": "0.102" } ] }, "perl-log-dispatch": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-devel-globaldestruction", "perl-dist-checkconflicts", "perl-ipc-run3", "perl-module-runtime", "perl-namespace-autoclean", "perl-params-validationcompiler", "perl-specio", "perl-test-fatal", "perl-test-needs", "perl-try-tiny" ], "downloads": [ "https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/Log-Dispatch-2.71.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Log::Dispatch" ], "licenses": [ "Artistic-2.0" ], "maintainers": [ "EbiArnie" ], "name": "perl-log-dispatch", "patches": [], "summary": "Dispatches messages to one or more outputs\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/Log-Dispatch-2.71.tar.gz" ], "version": "2.71" } ] }, "perl-log-dispatch-filerotate": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-date-manip", "perl-log-dispatch", "perl-path-tiny", "perl-sub-uplevel", "perl-test-warn" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/MS/MSCHOUT/Log-Dispatch-FileRotate-1.38.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Log::Dispatch::FileRotate" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-log-dispatch-filerotate", "patches": [], "summary": "Log to Files that Archive/Rotate Themselves\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/MS/MSCHOUT/Log-Dispatch-FileRotate-1.38.tar.gz" ], "version": "1.38" } ] }, "perl-log-log4perl": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/MS/MSCHILLI/Log-Log4perl-1.49.tar.gz", "https://cpan.metacpan.org/authors/id/M/MS/MSCHILLI/Log-Log4perl-1.46.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Log::Log4perl" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-log-log4perl", "patches": [], "summary": "Log4j implementation for Perl\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/MS/MSCHILLI/Log-Log4perl-1.46.tar.gz" ], "version": "1.46" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/M/MS/MSCHILLI/Log-Log4perl-1.49.tar.gz" ], "version": "1.49" } ] }, "perl-logger-simple": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-object-insideout" ], "downloads": [ "https://cpan.metacpan.org/authors/id/T/TS/TSTANLEY/Logger-Simple-2.0.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Logger::Simple" ], "licenses": [], "maintainers": [], "name": "perl-logger-simple", "patches": [], "summary": "Implementation of the Simran-Log-Log and Simran-Error-Error modules\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/T/TS/TSTANLEY/Logger-Simple-2.0.tar.gz" ], "version": "2.0" } ] }, "perl-lwp-mediatypes": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/LWP-MediaTypes-6.04.tar.gz", "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/LWP-MediaTypes-6.02.tar.gz" ], "homepages": [ "https://metacpan.org/pod/LWP::MediaTypes" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-lwp-mediatypes", "patches": [], "summary": "Guess media type for a file or a URL\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/LWP-MediaTypes-6.02.tar.gz" ], "version": "6.02" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/LWP-MediaTypes-6.04.tar.gz" ], "version": "6.04" } ] }, "perl-lwp-protocol-https": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-io-socket-ssl", "perl-libwww-perl", "perl-mozilla-ca", "perl-net-http", "perl-test-requiresinternet" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/LWP-Protocol-https-6.14.tar.gz", "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/LWP-Protocol-https-6.04.tar.gz" ], "homepages": [ "https://metacpan.org/pod/LWP::Protocol::https" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-lwp-protocol-https", "patches": [], "summary": "Provide https support for LWP::UserAgent\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/LWP-Protocol-https-6.04.tar.gz" ], "version": "6.04" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/LWP-Protocol-https-6.14.tar.gz" ], "version": "6.14" } ] }, "perl-mailtools": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-timedate" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/MA/MARKOV/MailTools-2.21.tar.gz" ], "homepages": [ "https://metacpan.org/release/MailTools" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-mailtools", "patches": [], "summary": "Perl module for handling mail\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/MA/MARKOV/MailTools-2.21.tar.gz" ], "version": "2.21" } ] }, "perl-math-bezier": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/A/AB/ABW/Math-Bezier-0.01.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Math::Bezier" ], "licenses": [], "maintainers": [], "name": "perl-math-bezier", "patches": [], "summary": "Math::Bezier - solution of Bezier Curves\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/A/AB/ABW/Math-Bezier-0.01.tar.gz" ], "version": "0.01" } ] }, "perl-math-bigint": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/P/PJ/PJACKLAM/Math-BigInt-2.003002.tar.gz", "https://cpan.metacpan.org/authors/id/P/PJ/PJACKLAM/Math-BigInt-1.999838.tar.gz", "https://cpan.metacpan.org/authors/id/P/PJ/PJACKLAM/Math-BigInt-1.999837.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Math::BigInt" ], "licenses": [], "maintainers": [], "name": "perl-math-bigint", "patches": [], "summary": "Math::BigInt - arbitrary size integer math package\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/P/PJ/PJACKLAM/Math-BigInt-1.999837.tar.gz" ], "version": "1.999837" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/P/PJ/PJACKLAM/Math-BigInt-1.999838.tar.gz" ], "version": "1.999838" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/P/PJ/PJACKLAM/Math-BigInt-2.003002.tar.gz" ], "version": "2.003002" } ] }, "perl-math-bigrat": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-module-install" ], "downloads": [ "https://cpan.metacpan.org/authors/id/P/PJ/PJACKLAM/Math-BigRat-0.260805.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Math::BigRat" ], "licenses": [], "maintainers": [], "name": "perl-math-bigrat", "patches": [], "summary": "Math::BigRat - arbitrary size rational number math package\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/P/PJ/PJACKLAM/Math-BigRat-0.260805.tar.gz" ], "version": "0.260805" } ] }, "perl-math-cdf": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/C/CA/CALLAHAN/Math-CDF-0.1.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Math::CDF" ], "licenses": [], "maintainers": [], "name": "perl-math-cdf", "patches": [], "summary": "Generate probabilities and quantiles from several statistical\nprobability functions\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/C/CA/CALLAHAN/Math-CDF-0.1.tar.gz" ], "version": "0.1" } ] }, "perl-math-cephes": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/S/SH/SHLOMIF/Math-Cephes-0.5305.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Math::Cephes" ], "licenses": [ "Artistic-1.0" ], "maintainers": [], "name": "perl-math-cephes", "patches": [], "summary": "This module provides an interface to over 150 functions of the cephes\nmath library of Stephen Moshier.\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/S/SH/SHLOMIF/Math-Cephes-0.5305.tar.gz" ], "version": "0.5305" } ] }, "perl-math-matrixreal": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-module-build" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/L/LE/LETO/Math-MatrixReal-2.13.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Math::MatrixReal" ], "licenses": [], "maintainers": [], "name": "perl-math-matrixreal", "patches": [], "summary": "Implements the data type \"matrix of real numbers\" (and consequently also\n\"vector of real numbers\").\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/L/LE/LETO/Math-MatrixReal-2.13.tar.gz" ], "version": "2.13" } ] }, "perl-math-round": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/G/GR/GROMMEL/Math-Round-0.07.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Math::Round" ], "licenses": [], "maintainers": [], "name": "perl-math-round", "patches": [], "summary": "Math::Round - Perl extension for rounding numbers\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/G/GR/GROMMEL/Math-Round-0.07.tar.gz" ], "version": "0.07" } ] }, "perl-math-symbolic": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-module-build", "perl-parse-recdescent" ], "downloads": [ "https://cpan.metacpan.org/authors/id/S/SM/SMUELLER/Math-Symbolic-0.612.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Math::Symbolic" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-math-symbolic", "patches": [], "summary": "Math::Symbolic - Symbolic calculations.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/S/SM/SMUELLER/Math-Symbolic-0.612.tar.gz" ], "version": "0.612" } ] }, "perl-math-vecstat": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/A/AS/ASPINELLI/Math-VecStat-0.08.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Math::VecStat" ], "licenses": [], "maintainers": [], "name": "perl-math-vecstat", "patches": [], "summary": "Math::VecStat - Some basic numeric stats on vectors\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/A/AS/ASPINELLI/Math-VecStat-0.08.tar.gz" ], "version": "0.08" } ] }, "perl-mce": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ 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MCE spawns a pool of workers and therefore does not fork a\nnew process per each element of data. Instead, MCE follows a bank\nqueuing model. Imagine the line being the data and bank-tellers the\nparallel workers. 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], "maintainers": [ "EbiArnie" ], "name": "perl-module-pluggable", "patches": [], "summary": "Automatically give your module the ability to have plugins\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/S/SI/SIMONW/Module-Pluggable-5.2.tar.gz" ], "version": "5.2" } ] }, "perl-module-runtime": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-module-build" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/Z/ZE/ZEFRAM/Module-Runtime-0.016.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Module::Runtime" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-module-runtime", "patches": [], "summary": "Runtime module handling\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/Z/ZE/ZEFRAM/Module-Runtime-0.016.tar.gz" ], "version": "0.016" } ] }, "perl-module-runtime-conflicts": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ 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"https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/Params-ValidationCompiler-0.31.tar.gz" ], "version": "0.31" } ] }, "perl-parse-recdescent": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "perl", "perl-module-build" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/J/JT/JTBRAUN/Parse-RecDescent-1.967015.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Parse::RecDescent" ], "licenses": [], "maintainers": [], "name": "perl-parse-recdescent", "patches": [], "summary": "Generate Recursive-Descent Parsers\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/J/JT/JTBRAUN/Parse-RecDescent-1.967015.tar.gz" ], "version": "1.967015" } ] }, "perl-parse-yapp": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-extutils-makemaker" ], "downloads": [ "https://cpan.metacpan.org/authors/id/W/WB/WBRASWELL/Parse-Yapp-1.21.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Parse::Yapp" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-parse-yapp", "patches": [], "summary": "Parse::Yapp - Perl extension for generating and using LALR parsers.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/W/WB/WBRASWELL/Parse-Yapp-1.21.tar.gz" ], "version": "1.21" } ] }, "perl-parselex": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/P/PS/PSCUST/ParseLex-2.21.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Parse::Lex" ], "licenses": [], "maintainers": [], "name": "perl-parselex", "patches": [], "summary": "Parse::Lex - Generator of lexical analyzers - moving pointer inside\ntext.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/P/PS/PSCUST/ParseLex-2.21.tar.gz" ], "version": "2.21" } ] }, "perl-parsetemplate": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/P/PS/PSCUST/ParseTemplate-3.08.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Parse::Template" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [], "name": "perl-parsetemplate", "patches": [], "summary": "Parse::Template - Processor for templates containing Perl expressions.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/P/PS/PSCUST/ParseTemplate-3.08.tar.gz" ], "version": "3.08" } ] }, "perl-path-class": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/K/KW/KWILLIAMS/Path-Class-0.37.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Path::Class" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-path-class", "patches": [], "summary": "Cross-platform path specification manipulation\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/K/KW/KWILLIAMS/Path-Class-0.37.tar.gz" ], "version": "0.37" } ] }, "perl-path-tiny": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/Path-Tiny-0.146.tar.gz", "https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/Path-Tiny-0.144.tar.gz", "https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/Path-Tiny-0.108.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Path::Tiny" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "perl-path-tiny", "patches": [], "summary": "This module provides a small, fast utility for working with file paths.\nIt is friendlier to use than File::Spec and provides easy access to\nfunctions from several other core file handling modules. It aims to be\nsmaller and faster than many alternatives on CPAN, while helping people\ndo many common things in consistent and less error-prone ways.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/Path-Tiny-0.108.tar.gz" ], "version": "0.108" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/Path-Tiny-0.144.tar.gz" ], "version": "0.144" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/Path-Tiny-0.146.tar.gz" ], "version": "0.146" } ] }, "perl-pathtools": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/X/XS/XSAWYERX/PathTools-3.75.tar.gz" ], "homepages": [ "https://metacpan.org/pod/File::Spec" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-pathtools", "patches": [], "summary": "File::Spec - portably perform operations on file names.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/X/XS/XSAWYERX/PathTools-3.75.tar.gz" ], "version": "3.75" } ] }, "perl-pdf-api2": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-font-ttf", "perl-test-exception", "perl-test-memory-cycle" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/S/SS/SSIMMS/PDF-API2-2.044.tar.gz", "http://search.cpan.org/CPAN/authors/id/S/SS/SSIMMS/PDF-API2-2.033.tar.gz" ], "homepages": [ "https://metacpan.org/pod/PDF::API2" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "perl-pdf-api2", "patches": [], "summary": "Facilitates the creation and modification of PDF files\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/S/SS/SSIMMS/PDF-API2-2.033.tar.gz" ], "version": "2.033" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/S/SS/SSIMMS/PDF-API2-2.044.tar.gz" ], "version": "2.044" } ] }, "perl-pegex": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-file-sharedir-install", "perl-yaml-libyaml" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/I/IN/INGY/Pegex-0.75.tar.gz", "http://search.cpan.org/CPAN/authors/id/I/IN/INGY/Pegex-0.64.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Pegex" ], "licenses": [ "Artistic-1.0" ], "maintainers": [], "name": "perl-pegex", "patches": [], "summary": "Acmeist PEG Parser Framework\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/I/IN/INGY/Pegex-0.64.tar.gz" ], "version": "0.64" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/I/IN/INGY/Pegex-0.75.tar.gz" ], "version": "0.75" } ] }, "perl-perl-critic": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-b-keywords", "perl-config-tiny", "perl-exception-class", "perl-file-which", "perl-list-someutils", "perl-module-pluggable", "perl-perl-tidy", "perl-pod-parser", "perl-pod-spell", "perl-ppi", "perl-ppix-quotelike", "perl-ppix-regexp", "perl-ppix-utils", "perl-readonly", "perl-string-format" ], "downloads": [ "https://cpan.metacpan.org/authors/id/P/PE/PETDANCE/Perl-Critic-1.152.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Perl::Critic" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-perl-critic", "patches": [], "summary": "Critique Perl source code for best-practices.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/P/PE/PETDANCE/Perl-Critic-1.152.tar.gz" ], "version": "1.152" } ] }, "perl-perl-critic-moose": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-namespace-autoclean", "perl-perl-critic", "perl-readonly" ], "downloads": [ "https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/Perl-Critic-Moose-1.05.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Perl::Critic::Moose" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-perl-critic-moose", "patches": [], "summary": "Policies for Perl::Critic concerned with using Moose\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DR/DROLSKY/Perl-Critic-Moose-1.05.tar.gz" ], "version": "1.05" } ] }, "perl-perl-tidy": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/S/SH/SHANCOCK/Perl-Tidy-20240202.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Perl::Tidy" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [ "EbiArnie" ], "name": "perl-perl-tidy", "patches": [], "summary": "Indent and reformat perl scripts\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/S/SH/SHANCOCK/Perl-Tidy-20240202.tar.gz" ], "version": "20240202" } ] }, "perl-perl-unsafe-signals": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/R/RG/RGARCIA/Perl-Unsafe-Signals-0.03.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Perl::Unsafe::Signals" ], "licenses": [], "maintainers": [], "name": "perl-perl-unsafe-signals", "patches": [], "summary": "Quoting perl581delta: In Perl 5.8.0 the so-called \"safe signals\" were\nintroduced. This means that Perl no longer handles signals immediately\nbut instead \"between opcodes\", when it is safe to do so. The earlier\nimmediate handling easily could corrupt the internal state of Perl,\nresulting in mysterious crashes. It's possible since perl 5.8.1 to\nglobally disable this feature by using the PERL_SIGNALS environment\nvariables (as specified in \"PERL_SIGNALS\" in perlrun); but there's no\nway to disable it locally, for a short period of time. That's however\nsomething you might want to do, if, for example, your Perl program calls\na C routine that will potentially run for a long time and for which you\nwant to set a timeout. This module therefore allows you to define\nUNSAFE_SIGNALS blocks in which signals will be handled \"unsafely\". Note\nthat, no matter how short you make the unsafe block, it will still be\nunsafe. Use with caution.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/R/RG/RGARCIA/Perl-Unsafe-Signals-0.03.tar.gz" ], "version": "0.03" } ] }, "perl-perl-version": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-file-slurp-tiny" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/B/BD/BDFOY/Perl-Version-1.017.tar.gz", "http://search.cpan.org/CPAN/authors/id/B/BD/BDFOY/Perl-Version-1.013_03.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Perl::Version" ], "licenses": [], "maintainers": [], "name": "perl-perl-version", "patches": [], "summary": "Parse and manipulate Perl version strings\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/B/BD/BDFOY/Perl-Version-1.013_03.tar.gz" ], "version": "1.013_03" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/B/BD/BDFOY/Perl-Version-1.017.tar.gz" ], "version": "1.017" } ] }, "perl-perl4-corelibs": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-module-build" ], "downloads": [ "https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/Perl4-CoreLibs-0.005.tar.gz", "https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/Perl4-CoreLibs-0.004.tar.gz", "https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/Perl4-CoreLibs-0.003.tar.gz", "https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/Perl4-CoreLibs-0.002.tar.gz", "https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/Perl4-CoreLibs-0.001.tar.gz", "https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/Perl4-CoreLibs-0.000.tar.gz" ], "homepages": [ "https://metacpan.org/pod/release/ZEFRAM/Perl4-CoreLibs-0.003/lib/Perl4/CoreLibs.pm" ], "licenses": [], "maintainers": [], "name": "perl-perl4-corelibs", "patches": [], "summary": "Perl4::CoreLibs - libraries historically supplied with Perl 4\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/Perl4-CoreLibs-0.000.tar.gz" ], "version": "0.000" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/Perl4-CoreLibs-0.001.tar.gz" ], "version": "0.001" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/Perl4-CoreLibs-0.002.tar.gz" ], "version": "0.002" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/Perl4-CoreLibs-0.003.tar.gz" ], "version": "0.003" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/Perl4-CoreLibs-0.004.tar.gz" ], "version": "0.004" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/Perl4-CoreLibs-0.005.tar.gz" ], "version": "0.005" } ] }, "perl-perl6-slurp": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DC/DCONWAY/Perl6-Slurp-0.051005.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Perl6::Slurp" ], "licenses": [], "maintainers": [], "name": "perl-perl6-slurp", "patches": [], "summary": "Perl6::Slurp - Implements the Perl 6 'slurp' built-in\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DC/DCONWAY/Perl6-Slurp-0.051005.tar.gz" ], "version": "0.051005" } ] }, "perl-perlio-gzip": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "zlib-api" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/N/NW/NWCLARK/PerlIO-gzip-0.20.tar.gz", "http://search.cpan.org/CPAN/authors/id/N/NW/NWCLARK/PerlIO-gzip-0.19.tar.gz" ], "homepages": [ "https://metacpan.org/pod/PerlIO::gzip" ], "licenses": [], "maintainers": [], "name": "perl-perlio-gzip", "patches": [], "summary": "Perl extension to provide a PerlIO layer to gzip/gunzip\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/N/NW/NWCLARK/PerlIO-gzip-0.19.tar.gz" ], "version": "0.19" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/N/NW/NWCLARK/PerlIO-gzip-0.20.tar.gz" ], "version": "0.20" } ] }, "perl-perlio-utf8-strict": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-module-build" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/L/LE/LEONT/PerlIO-utf8_strict-0.010.tar.gz", "http://search.cpan.org/CPAN/authors/id/L/LE/LEONT/PerlIO-utf8_strict-0.009.tar.gz", "http://search.cpan.org/CPAN/authors/id/L/LE/LEONT/PerlIO-utf8_strict-0.002.tar.gz" ], "homepages": [ "https://metacpan.org/pod/PerlIO::utf8_strict" ], "licenses": [ "Artistic-1.0" ], "maintainers": [], "name": "perl-perlio-utf8-strict", "patches": [], "summary": "This module provides a fast and correct UTF-8 PerlIO layer.\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/L/LE/LEONT/PerlIO-utf8_strict-0.002.tar.gz" ], "version": "0.002" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/L/LE/LEONT/PerlIO-utf8_strict-0.009.tar.gz" ], "version": "0.009" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/L/LE/LEONT/PerlIO-utf8_strict-0.010.tar.gz" ], "version": "0.010" } ] }, "perl-plack": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-apache-logformat-compiler", "perl-cookie-baker", "perl-devel-stacktrace", "perl-devel-stacktrace-ashtml", "perl-file-sharedir", "perl-file-sharedir-install", "perl-filesys-notify-simple", "perl-hash-multivalue", "perl-http-entity-parser", "perl-http-headers-fast", "perl-http-message", "perl-stream-buffered", "perl-test-requires", "perl-test-tcp", "perl-try-tiny", "perl-uri", "perl-www-form-urlencoded" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA/Plack-1.0051.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Plack" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-plack", "patches": [], "summary": "Perl Superglue for Web frameworks and Web Servers (PSGI toolkit)\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA/Plack-1.0051.tar.gz" ], "version": "1.0051" } ] }, "perl-plack-middleware-assets": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-css-minifier-xs", "perl-http-date", "perl-javascript-minifier-xs", "perl-plack" ], "downloads": [ "https://cpan.metacpan.org/authors/id/P/PE/PERLER/Plack-Middleware-Assets-1.0.0.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Plack::Middleware::Assets" ], "licenses": [ "BSD" ], "maintainers": [ "EbiArnie" ], "name": "perl-plack-middleware-assets", "patches": [], "summary": "Concatenate and minify JavaScript and CSS files\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/P/PE/PERLER/Plack-Middleware-Assets-1.0.0.tar.gz" ], "version": "1.0.0" } ] }, "perl-plack-middleware-crossorigin": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-plack" ], "downloads": [ "https://cpan.metacpan.org/authors/id/H/HA/HAARG/Plack-Middleware-CrossOrigin-0.014.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Plack::Middleware::CrossOrigin" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-plack-middleware-crossorigin", "patches": [], "summary": "Adds headers to allow Cross-Origin Resource Sharing\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/H/HA/HAARG/Plack-Middleware-CrossOrigin-0.014.tar.gz" ], "version": "0.014" } ] }, "perl-plack-middleware-deflater": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-plack", "perl-test-requires" ], "downloads": [ "https://cpan.metacpan.org/authors/id/K/KA/KAZEBURO/Plack-Middleware-Deflater-0.12.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Plack::Middleware::Deflater" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-plack-middleware-deflater", "patches": [], "summary": "Compress response body with Gzip or Deflate\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/K/KA/KAZEBURO/Plack-Middleware-Deflater-0.12.tar.gz" ], "version": "0.12" } ] }, "perl-plack-middleware-fixmissingbodyinredirect": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-html-parser", "perl-http-message", "perl-plack" ], "downloads": [ "https://cpan.metacpan.org/authors/id/S/SW/SWEETKID/Plack-Middleware-FixMissingBodyInRedirect-0.12.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Plack::Middleware::FixMissingBodyInRedirect" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-plack-middleware-fixmissingbodyinredirect", "patches": [], "summary": "Plack::Middleware which sets body for redirect response, if it's not\nalready set\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/S/SW/SWEETKID/Plack-Middleware-FixMissingBodyInRedirect-0.12.tar.gz" ], "version": "0.12" } ] }, "perl-plack-middleware-methodoverride": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-plack", "perl-uri" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA/Plack-Middleware-MethodOverride-0.20.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Plack::Middleware::MethodOverride" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-plack-middleware-methodoverride", "patches": [], "summary": "Override REST methods to Plack apps via POST\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA/Plack-Middleware-MethodOverride-0.20.tar.gz" ], "version": "0.20" } ] }, "perl-plack-middleware-removeredundantbody": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-http-message", "perl-plack" ], "downloads": [ "https://cpan.metacpan.org/authors/id/S/SW/SWEETKID/Plack-Middleware-RemoveRedundantBody-0.09.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Plack::Middleware::RemoveRedundantBody" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-plack-middleware-removeredundantbody", "patches": [], "summary": "Plack::Middleware which removes body for HTTP response if it's not\nrequired\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/S/SW/SWEETKID/Plack-Middleware-RemoveRedundantBody-0.09.tar.gz" ], "version": "0.09" } ] }, "perl-plack-middleware-reverseproxy": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-plack" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA/Plack-Middleware-ReverseProxy-0.16.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Plack::Middleware::ReverseProxy" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-plack-middleware-reverseproxy", "patches": [], "summary": "Supports app to run as a reverse proxy backend\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA/Plack-Middleware-ReverseProxy-0.16.tar.gz" ], "version": "0.16" } ] }, "perl-plack-test-externalserver": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-http-message", "perl-libwww-perl", "perl-plack", "perl-test-tcp", "perl-uri" ], "downloads": [ "https://cpan.metacpan.org/authors/id/E/ET/ETHER/Plack-Test-ExternalServer-0.02.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Plack::Test::ExternalServer" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-plack-test-externalserver", "patches": [], "summary": "Run HTTP tests on external live servers\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/E/ET/ETHER/Plack-Test-ExternalServer-0.02.tar.gz" ], "version": "0.02" } ] }, "perl-pod-coverage": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-devel-symdump", "perl-pod-parser" ], "downloads": [ "https://cpan.metacpan.org/authors/id/R/RC/RCLAMP/Pod-Coverage-0.23.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Pod::Coverage" ], "licenses": [], "maintainers": [ "EbiArnie" ], "name": "perl-pod-coverage", "patches": [], "summary": "Checks if the documentation of a module is comprehensive\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/R/RC/RCLAMP/Pod-Coverage-0.23.tar.gz" ], "version": "0.23" } ] }, "perl-pod-parser": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/MA/MAREKR/Pod-Parser-1.67.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Pod::Parser" ], "licenses": [], "maintainers": [ "EbiArnie" ], "name": "perl-pod-parser", "patches": [], "summary": "Modules for parsing/translating POD format documents\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/MA/MAREKR/Pod-Parser-1.67.tar.gz" ], "version": "1.67" } ] }, "perl-pod-spell": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-class-tiny", "perl-file-sharedir", "perl-file-sharedir-install", "perl-lingua-en-inflect" ], "downloads": [ "https://cpan.metacpan.org/authors/id/H/HA/HAARG/Pod-Spell-1.26.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Pod::Spell" ], "licenses": [ "Artistic-2.0" ], "maintainers": [ "EbiArnie" ], "name": "perl-pod-spell", "patches": [], "summary": "A formatter for spellchecking Pod\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/H/HA/HAARG/Pod-Spell-1.26.tar.gz" ], "version": "1.26" } ] }, "perl-posix-strftime-compiler": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-module-build-tiny" ], "downloads": [ "https://cpan.metacpan.org/authors/id/K/KA/KAZEBURO/POSIX-strftime-Compiler-0.46.tar.gz" ], "homepages": [ "https://metacpan.org/pod/POSIX::strftime::Compiler" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-posix-strftime-compiler", "patches": [], "summary": "GNU C library compatible strftime for loggers and servers\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/K/KA/KAZEBURO/POSIX-strftime-Compiler-0.46.tar.gz" ], "version": "0.46" } ] }, "perl-ppi": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-class-inspector", "perl-clone", "perl-params-util", "perl-task-weaken", "perl-test-nowarnings", "perl-test-object", "perl-test-subcalls" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/MI/MITHALDU/PPI-1.277.tar.gz" ], "homepages": [ "https://metacpan.org/pod/PPI" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-ppi", "patches": [], "summary": "Parse, Analyze and Manipulate Perl (without perl)\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/MI/MITHALDU/PPI-1.277.tar.gz" ], "version": "1.277" } ] }, "perl-ppix-quotelike": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-ppi", "perl-readonly" ], "downloads": [ "https://cpan.metacpan.org/authors/id/W/WY/WYANT/PPIx-QuoteLike-0.023.tar.gz" ], "homepages": [ "https://metacpan.org/pod/PPIx::QuoteLike" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-ppix-quotelike", "patches": [], "summary": "Parse Perl string literals and string-literal-like things.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/W/WY/WYANT/PPIx-QuoteLike-0.023.tar.gz" ], "version": "0.023" } ] }, "perl-ppix-regexp": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-ppi", "perl-task-weaken" ], "downloads": [ "https://cpan.metacpan.org/authors/id/W/WY/WYANT/PPIx-Regexp-0.088.tar.gz" ], "homepages": [ "https://metacpan.org/pod/PPIx::Regexp" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-ppix-regexp", "patches": [], "summary": "Parse regular expressions\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/W/WY/WYANT/PPIx-Regexp-0.088.tar.gz" ], "version": "0.088" } ] }, "perl-ppix-utils": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-b-keywords", "perl-ppi" ], "downloads": [ "https://cpan.metacpan.org/authors/id/D/DB/DBOOK/PPIx-Utils-0.003.tar.gz" ], "homepages": [ "https://metacpan.org/pod/PPIx::Utils" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-ppix-utils", "patches": [], "summary": "Utility functions for PPI\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/D/DB/DBOOK/PPIx-Utils-0.003.tar.gz" ], "version": "0.003" } ] }, "perl-proc-daemon": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-proc-processtable" ], "downloads": [ "https://cpan.metacpan.org/authors/id/A/AK/AKREAL/Proc-Daemon-0.23.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Proc::Daemon" ], "licenses": [], "maintainers": [ "EbiArnie" ], "name": "perl-proc-daemon", "patches": [], "summary": "Run Perl program(s) as a daemon process\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/A/AK/AKREAL/Proc-Daemon-0.23.tar.gz" ], "version": "0.23" } ] }, "perl-proc-processtable": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/J/JW/JWB/Proc-ProcessTable-0.636.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Proc::ProcessTable" ], "licenses": [ "Artistic-2.0" ], "maintainers": [ "EbiArnie" ], "name": "perl-proc-processtable", "patches": [], "summary": "Perl extension to access the unix process table\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/J/JW/JWB/Proc-ProcessTable-0.636.tar.gz" ], "version": "0.636" } ] }, "perl-readonly": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-module-build-tiny" ], "downloads": [ "https://cpan.metacpan.org/authors/id/S/SA/SANKO/Readonly-2.05.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Readonly" ], "licenses": [], "maintainers": [], "name": "perl-readonly", "patches": [], "summary": "Readonly - Facility for creating read-only scalars, arrays, hashes\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/S/SA/SANKO/Readonly-2.05.tar.gz" ], "version": "2.05" } ] }, "perl-readonly-xs": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-readonly" ], "downloads": [ "https://cpan.metacpan.org/authors/id/R/RO/ROODE/Readonly-XS-1.05.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Readonly::XS" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-readonly-xs", "patches": [], "summary": "Companion module for Readonly.pm, to speed up read-only scalar\nvariables.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/R/RO/ROODE/Readonly-XS-1.05.tar.gz" ], "version": "1.05" } ] }, "perl-ref-util": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/A/AR/ARC/Ref-Util-0.204.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Ref::Util" ], "licenses": [ "MIT" ], "maintainers": [ "EbiArnie" ], "name": "perl-ref-util", "patches": [], "summary": "Utility functions for checking references\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/A/AR/ARC/Ref-Util-0.204.tar.gz" ], "version": "0.204" } ] }, "perl-regexp-common": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/A/AB/ABIGAIL/Regexp-Common-2017060201.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Regexp::Common" ], "licenses": [ "MIT OR Artistic-2.0" ], "maintainers": [], "name": "perl-regexp-common", "patches": [], "summary": "Regexp::Common - Provide commonly requested regular expressions\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/A/AB/ABIGAIL/Regexp-Common-2017060201.tar.gz" ], "version": "2017060201" } ] }, "perl-role-tiny": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-exporter-tiny" ], "downloads": [ "https://cpan.metacpan.org/authors/id/H/HA/HAARG/Role-Tiny-2.002004.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Role::Tiny" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-role-tiny", "patches": [], "summary": "Role::Tiny - Roles: a nouvelle cuisine portion size slice of Moose\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/H/HA/HAARG/Role-Tiny-2.002004.tar.gz" ], "version": "2.002004" } ] }, "perl-rose-datetime": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-datetime", "perl-rose-object" ], "downloads": [ "https://cpan.metacpan.org/authors/id/J/JS/JSIRACUSA/Rose-DateTime-0.540.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Rose::DateTime" ], "licenses": [], "maintainers": [ "EbiArnie" ], "name": "perl-rose-datetime", "patches": [], "summary": "DateTime helper functions and objects.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/J/JS/JSIRACUSA/Rose-DateTime-0.540.tar.gz" ], "version": "0.540" } ] }, "perl-rose-db": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-bit-vector", "perl-clone-pp", "perl-datetime", "perl-datetime-format-mysql", "perl-datetime-format-oracle", "perl-datetime-format-pg", "perl-dbi", "perl-rose-datetime", "perl-rose-object", "perl-sql-reservedwords", "perl-time-clock" ], "downloads": [ "https://cpan.metacpan.org/authors/id/J/JS/JSIRACUSA/Rose-DB-0.785.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Rose::DB" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-rose-db", "patches": [], "summary": "A DBI wrapper and abstraction layer.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/J/JS/JSIRACUSA/Rose-DB-0.785.tar.gz" ], "version": "0.785" } ] }, "perl-rose-db-object": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-bit-vector", "perl-clone", "perl-datetime", "perl-dbi", "perl-list-moreutils", "perl-rose-datetime", "perl-rose-db", "perl-rose-object", "perl-time-clock" ], "downloads": [ "https://cpan.metacpan.org/authors/id/J/JS/JSIRACUSA/Rose-DB-Object-0.820.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Rose::DB::Object" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-rose-db-object", "patches": [], "summary": "Extensible, high performance object-relational mapper (ORM).\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/J/JS/JSIRACUSA/Rose-DB-Object-0.820.tar.gz" ], "version": "0.820" } ] }, "perl-rose-object": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ 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"perl-scalar-list-utils": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/P/PE/PEVANS/Scalar-List-Utils-1.63.tar.gz", "https://cpan.metacpan.org/authors/id/P/PE/PEVANS/Scalar-List-Utils-1.50.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Scalar::Util" ], "licenses": [], "maintainers": [], "name": "perl-scalar-list-utils", "patches": [], "summary": "Scalar::Util - A selection of general-utility scalar subroutines\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/P/PE/PEVANS/Scalar-List-Utils-1.50.tar.gz" ], "version": "1.50" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/P/PE/PEVANS/Scalar-List-Utils-1.63.tar.gz" ], "version": "1.63" } ] }, "perl-scalar-util-numeric": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/C/CH/CHOCOLATE/Scalar-Util-Numeric-0.40.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Scalar::Util::Numeric" ], "licenses": [], "maintainers": [], "name": "perl-scalar-util-numeric", "patches": [], "summary": "This module exports a number of wrappers around perl's builtin\ngrok_number function, which returns the numeric type of its argument, or\n0 if it isn't numeric.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/C/CH/CHOCOLATE/Scalar-Util-Numeric-0.40.tar.gz" ], "version": "0.40" } ] }, "perl-scope-guard": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/C/CH/CHOCOLATE/Scope-Guard-0.21.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Scope::Guard" ], "licenses": [], "maintainers": [ "EbiArnie" ], "name": "perl-scope-guard", "patches": [], "summary": "Lexically-scoped resource management\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/C/CH/CHOCOLATE/Scope-Guard-0.21.tar.gz" ], "version": "0.21" } ] }, 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}, { "downloads": [ "https://cpan.metacpan.org/authors/id/H/HA/HAARG/Sub-Quote-2.006008.tar.gz" ], "version": "2.006008" } ] }, "perl-sub-uplevel": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DA/DAGOLDEN/Sub-Uplevel-0.2800.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Sub::Uplevel" ], "licenses": [], "maintainers": [], "name": "perl-sub-uplevel", "patches": [], "summary": "apparently run a function in a higher stack frame\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DA/DAGOLDEN/Sub-Uplevel-0.2800.tar.gz" ], "version": "0.2800" } ] }, "perl-svg": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/SVG-2.87.tar.gz", "http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/SVG-2.78.tar.gz" ], "homepages": [ "https://metacpan.org/pod/SVG" ], "licenses": [], "maintainers": [], "name": "perl-svg", "patches": [], "summary": "Perl extension for generating Scalable Vector Graphics (SVG) documents.\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/SVG-2.78.tar.gz" ], "version": "2.78" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/M/MA/MANWAR/SVG-2.87.tar.gz" ], "version": "2.87" } ] }, "perl-swissknife": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-module-build" ], "downloads": [ "https://downloads.sourceforge.net/project/swissknife/swissknife/1.75/Swissknife_1.75.tar.gz" ], "homepages": [ "https://swissknife.sourceforge.net" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "perl-swissknife", "patches": [], "summary": "An object-oriented Perl library to handle Swiss-Prot entries\n", "version": [ { "downloads": [ "https://downloads.sourceforge.net/project/swissknife/swissknife/1.75/Swissknife_1.75.tar.gz" ], "version": "1.75" } ] }, "perl-sys-sigaction": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/L/LB/LBAXTER/Sys-SigAction-0.23.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Sys::SigAction" ], "licenses": [], "maintainers": [], "name": "perl-sys-sigaction", "patches": [], "summary": "Prior to version 5.8.0 perl implemented 'unsafe' signal handling. The\nreason it is consider unsafe, is that there is a risk that a signal will\narrive, and be handled while perl is changing internal data structures.\nThis can result in all kinds of subtle and not so subtle problems. For\nthis reason it has always been recommended that one do as little as\npossible in a signal handler, and only variables that already exist be\nmanipulated. Perl 5.8.0 and later versions implements 'safe' signal\nhandling on platforms which support the POSIX sigaction() function. This\nis accomplished by having perl note that a signal has arrived, but\ndeferring the execution of the signal handler until such time as it is\nsafe to do so. Unfortunately these changes can break some existing\nscripts, if they depended on a system routine being interrupted by the\nsignal's arrival. The perl 5.8.0 implementation was modified further in\nversion 5.8.2\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/L/LB/LBAXTER/Sys-SigAction-0.23.tar.gz" ], "version": "0.23" } ] }, "perl-task-weaken": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-module-install" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/A/AD/ADAMK/Task-Weaken-1.06.tar.gz", "http://search.cpan.org/CPAN/authors/id/A/AD/ADAMK/Task-Weaken-1.04.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Task::Weaken" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-task-weaken", "patches": [], "summary": "Ensure that a platform has weaken support\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/A/AD/ADAMK/Task-Weaken-1.04.tar.gz" ], "version": "1.04" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/A/AD/ADAMK/Task-Weaken-1.06.tar.gz" ], "version": "1.06" } ] }, "perl-template-toolkit": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-appconfig", "perl-extutils-makemaker", "perl-file-temp", "perl-pathtools", "perl-test-leaktrace" ], "downloads": [ "https://cpan.metacpan.org/authors/id/A/AB/ABW/Template-Toolkit-3.101.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Template" ], "licenses": [], "maintainers": [ "ChristopherChristofi" ], "name": "perl-template-toolkit", "patches": [], "summary": "Template - Front-end module to the Template Toolkit.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/A/AB/ABW/Template-Toolkit-3.101.tar.gz" ], "version": "3.101" } ] }, "perl-term-ansicolor-markup": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-class-accessor-lvalue", "perl-html-parser", "perl-module-install", "perl-test-exception" ], "downloads": [ "https://cpan.metacpan.org/authors/id/K/KE/KENTARO/Term-ANSIColor-Markup-0.06.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Term::ANSIColor::Markup" ], "licenses": [ "MIT" ], "maintainers": [ "EbiArnie" ], "name": "perl-term-ansicolor-markup", "patches": [], "summary": "Colorize tagged strings for screen output\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/K/KE/KENTARO/Term-ANSIColor-Markup-0.06.tar.gz" ], "version": "0.06" } ] }, "perl-term-readline-gnu": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "readline" ], "downloads": [ "https://cpan.metacpan.org/authors/id/H/HA/HAYASHI/Term-ReadLine-Gnu-1.46.tar.gz", "https://cpan.metacpan.org/authors/id/H/HA/HAYASHI/Term-ReadLine-Gnu-1.36.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Term::ReadLine::Gnu" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-term-readline-gnu", "patches": [], "summary": "Perl extension for the GNU Readline/History Library.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/H/HA/HAYASHI/Term-ReadLine-Gnu-1.36.tar.gz" ], "version": "1.36" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/H/HA/HAYASHI/Term-ReadLine-Gnu-1.46.tar.gz" ], "version": "1.46" } ] }, "perl-term-table": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/E/EX/EXODIST/Term-Table-0.018.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Term::Table" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [ "EbiArnie" ], "name": "perl-term-table", "patches": [], "summary": "Format a header and rows into a table\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/E/EX/EXODIST/Term-Table-0.018.tar.gz" ], "version": "0.018" } ] }, "perl-termreadkey": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://www.cpan.org/authors/id/J/JS/JSTOWE/TermReadKey-2.38.tar.gz", "https://www.cpan.org/authors/id/J/JS/JSTOWE/TermReadKey-2.37.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Term::ReadKey" ], "licenses": [], "maintainers": [], "name": "perl-termreadkey", "patches": [], "summary": "Term::ReadKey is a compiled perl module dedicated to providing simple\ncontrol over terminal driver modes (cbreak, raw, cooked, etc.,) support\nfor non-blocking reads, if the architecture allows, and some generalized\nhandy functions for working with terminals. One of the main goals is to\nhave the functions as portable as possible, so you can just plug in \"use\nTerm::ReadKey\" on any architecture and have a good likelihood of it\nworking.\n", "version": [ { "downloads": [ "https://www.cpan.org/authors/id/J/JS/JSTOWE/TermReadKey-2.37.tar.gz" ], "version": "2.37" }, { "downloads": [ "https://www.cpan.org/authors/id/J/JS/JSTOWE/TermReadKey-2.38.tar.gz" ], "version": "2.38" } ] }, "perl-test-base": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-algorithm-diff", "perl-spiffy", "perl-text-diff" ], "downloads": [ "https://cpan.metacpan.org/authors/id/I/IN/INGY/Test-Base-0.89.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Test::Base" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [ "EbiArnie" ], "name": "perl-test-base", "patches": [], "summary": "A Data Driven Testing Framework\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/I/IN/INGY/Test-Base-0.89.tar.gz" ], "version": "0.89" } ] }, "perl-test-class": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-module-runtime", "perl-mro-compat", "perl-test-exception", "perl-try-tiny" ], "downloads": [ "https://cpan.metacpan.org/authors/id/S/SZ/SZABGAB/Test-Class-0.52.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Test::Class" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-test-class", "patches": [], "summary": "Easily create test classes in an xUnit/JUnit style\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/S/SZ/SZABGAB/Test-Class-0.52.tar.gz" ], "version": "0.52" } ] }, "perl-test-cleannamespaces": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-file-pushd", "perl-module-runtime", "perl-namespace-clean", "perl-package-stash", "perl-sub-exporter", "perl-sub-identify", "perl-test-deep", "perl-test-needs", "perl-test-warnings" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/E/ET/ETHER/Test-CleanNamespaces-0.22.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Test::CleanNamespaces" ], "licenses": [ "Artistic-1.0" ], "maintainers": [], "name": "perl-test-cleannamespaces", "patches": [], "summary": "This module lets you check your module's namespaces for imported\nfunctions you might have forgotten to remove\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/E/ET/ETHER/Test-CleanNamespaces-0.22.tar.gz" ], "version": "0.22" } ] }, "perl-test-deep": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/R/RJ/RJBS/Test-Deep-1.204.tar.gz", "http://search.cpan.org/CPAN/authors/id/R/RJ/RJBS/Test-Deep-1.127.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Test::Deep" ], "licenses": [], "maintainers": [], "name": "perl-test-deep", "patches": [], "summary": "Extremely flexible deep comparison\n", "version": [ { "downloads": [ 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"http://search.cpan.org/CPAN/authors/id/D/DC/DCANTRELL/Test-Differences-0.71.tar.gz", "http://search.cpan.org/CPAN/authors/id/D/DC/DCANTRELL/Test-Differences-0.69.tar.gz", "http://search.cpan.org/CPAN/authors/id/D/DC/DCANTRELL/Test-Differences-0.64.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Test::Differences" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-test-differences", "patches": [], "summary": "Test strings and data structures and show differences if not ok\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DC/DCANTRELL/Test-Differences-0.64.tar.gz" ], "version": "0.64" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DC/DCANTRELL/Test-Differences-0.69.tar.gz" ], "version": "0.69" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/D/DC/DCANTRELL/Test-Differences-0.71.tar.gz" ], "version": "0.71" } ] }, "perl-test-exception": { "alias": [], "categories": [], "dependencies": [ 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testing code with exceptions\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/R/RJ/RJBS/Test-Fatal-0.014.tar.gz" ], "version": "0.014" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/R/RJ/RJBS/Test-Fatal-0.017.tar.gz" ], "version": "0.017" } ] }, "perl-test-file": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/B/BD/BDFOY/Test-File-1.993.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Test::File" ], "licenses": [ "Artistic-2.0" ], "maintainers": [ "EbiArnie" ], "name": "perl-test-file", "patches": [], "summary": "Test file attributes\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/B/BD/BDFOY/Test-File-1.993.tar.gz" ], "version": "1.993" } ] }, "perl-test-file-contents": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-text-diff" ], "downloads": [ 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"perl-test-file-sharedir", "patches": [], "summary": "Create a Fake ShareDir for your modules for testing.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/K/KE/KENTNL/Test-File-ShareDir-1.001002.tar.gz" ], "version": "1.001002" } ] }, "perl-test-json": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-json-any", "perl-test-differences" ], "downloads": [ "https://cpan.metacpan.org/authors/id/O/OV/OVID/Test-JSON-0.11.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Test::JSON" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-test-json", "patches": [], "summary": "Test JSON data\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/O/OV/OVID/Test-JSON-0.11.tar.gz" ], "version": "0.11" } ] }, "perl-test-leaktrace": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ 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}, "perl-test-xml": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-xml-parser", "perl-xml-semanticdiff" ], "downloads": [ "https://cpan.metacpan.org/authors/id/S/SE/SEMANTICO/Test-XML-0.08.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Test::XML" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-test-xml", "patches": [], "summary": "Compare XML in perl tests\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/S/SE/SEMANTICO/Test-XML-0.08.tar.gz" ], "version": "0.08" } ] }, "perl-test-xml-simple": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-test-longstring", "perl-xml-libxml" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/MC/MCMAHON/Test-XML-Simple-1.05.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Test::XML::Simple" ], "licenses": [ "Artistic-1.0" ], "maintainers": [ "EbiArnie" ], "name": "perl-test-xml-simple", "patches": [], 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The goal is for names with the same pronunciation\nto be encoded to the same representation so that they can be matched\ndespite minor differences in spelling\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/R/RJ/RJBS/Text-Soundex-3.05.tar.gz" ], "version": "3.05" } ] }, "perl-text-unidecode": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/S/SB/SBURKE/Text-Unidecode-1.30.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Text::Unidecode" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-text-unidecode", "patches": [], "summary": "plain ASCII transliterations of Unicode text\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/S/SB/SBURKE/Text-Unidecode-1.30.tar.gz" ], "version": "1.30" } ] }, "perl-thread-queue": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/J/JD/JDHEDDEN/Thread-Queue-3.13.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Thread::Queue" ], "licenses": [], "maintainers": [], "name": "perl-thread-queue", "patches": [], "summary": "Thread::Queue - Thread-safe queues. 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"downloads": [ "https://cpan.metacpan.org/authors/id/N/NU/NUFFIN/Tie-ToObject-0.03.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Tie::ToObject" ], "licenses": [], "maintainers": [ "EbiArnie" ], "name": "perl-tie-toobject", "patches": [], "summary": "Tie to an existing object.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/N/NU/NUFFIN/Tie-ToObject-0.03.tar.gz" ], "version": "0.03" } ] }, "perl-time-clock": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/J/JS/JSIRACUSA/Time-Clock-1.03.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Time::Clock" ], "licenses": [], "maintainers": [ "EbiArnie" ], "name": "perl-time-clock", "patches": [], "summary": "Twenty-four hour clock object with nanosecond precision.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/J/JS/JSIRACUSA/Time-Clock-1.03.tar.gz" ], "version": "1.03" } ] }, "perl-time-duration": { "alias": [], 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"1.34" } ] }, "perl-tree-simple-visitorfactory": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-test-exception", "perl-tree-simple" ], "downloads": [ "https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/Tree-Simple-VisitorFactory-0.16.tgz" ], "homepages": [ "https://metacpan.org/pod/Tree::Simple::VisitorFactory" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-tree-simple-visitorfactory", "patches": [], "summary": "A factory object for dispensing Visitor objects\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/Tree-Simple-VisitorFactory-0.16.tgz" ], "version": "0.16" } ] }, "perl-try-tiny": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/E/ET/ETHER/Try-Tiny-0.31.tar.gz", "http://search.cpan.org/CPAN/authors/id/E/ET/ETHER/Try-Tiny-0.28.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Try::Tiny" ], "licenses": [ "MIT" ], "maintainers": [], "name": "perl-try-tiny", "patches": [], "summary": "Minimal try/catch with proper preservation of $@\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/E/ET/ETHER/Try-Tiny-0.28.tar.gz" ], "version": "0.28" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/E/ET/ETHER/Try-Tiny-0.31.tar.gz" ], "version": "0.31" } ] }, "perl-type-tiny": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-exporter-tiny" ], "downloads": [ "https://cpan.metacpan.org/authors/id/T/TO/TOBYINK/Type-Tiny-2.004000.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Type::Tiny" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [ "EbiArnie" ], "name": "perl-type-tiny", "patches": [], "summary": "Tiny, yet Moo(se)-compatible type constraint\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/T/TO/TOBYINK/Type-Tiny-2.004000.tar.gz" ], "version": "2.004000" } ] }, "perl-types-serialiser": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-common-sense" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/ML/MLEHMANN/Types-Serialiser-1.01.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Types::Serialiser" ], "licenses": [], "maintainers": [ "EbiArnie" ], "name": "perl-types-serialiser", "patches": [], "summary": "Simple data types for common serialisation formats\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/ML/MLEHMANN/Types-Serialiser-1.01.tar.gz" ], "version": "1.01" } ] }, "perl-universal-can": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/C/CH/CHROMATIC/UNIVERSAL-can-1.20140328.tar.gz" ], "homepages": [ "https://metacpan.org/pod/UNIVERSAL::can" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-universal-can", "patches": [], "summary": "Work around buggy code calling UNIVERSAL::can() as a function\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/C/CH/CHROMATIC/UNIVERSAL-can-1.20140328.tar.gz" ], "version": "1.20140328" } ] }, "perl-universal-isa": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/E/ET/ETHER/UNIVERSAL-isa-1.20171012.tar.gz" ], "homepages": [ "https://metacpan.org/pod/UNIVERSAL::isa" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-universal-isa", "patches": [], "summary": "Attempt to recover from people calling UNIVERSAL::isa as a function\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/E/ET/ETHER/UNIVERSAL-isa-1.20171012.tar.gz" ], "version": "1.20171012" } ] }, "perl-uri": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-test-needs" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/E/ET/ETHER/URI-5.08.tar.gz", "http://search.cpan.org/CPAN/authors/id/E/ET/ETHER/URI-1.72.tar.gz", "http://search.cpan.org/CPAN/authors/id/E/ET/ETHER/URI-1.71.tar.gz" ], "homepages": [ "https://metacpan.org/pod/URI" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-uri", "patches": [], "summary": "Uniform Resource Identifiers (absolute and relative)\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/E/ET/ETHER/URI-1.71.tar.gz" ], "version": "1.71" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/E/ET/ETHER/URI-1.72.tar.gz" ], "version": "1.72" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/E/ET/ETHER/URI-5.08.tar.gz" ], "version": "5.08" } ] }, "perl-uri-encode": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-module-build" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/MI/MITHUN/URI-Encode-v1.1.1.tar.gz" ], "homepages": [ "https://github.com/mithun/perl-uri-encode" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-uri-encode", "patches": [], "summary": "This modules provides simple URI (Percent) encoding/decoding\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/MI/MITHUN/URI-Encode-v1.1.1.tar.gz" ], "version": "1.1.1" } ] }, "perl-uri-find": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-uri" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/MS/MSCHWERN/URI-Find-20160806.tar.gz" ], "homepages": [ "https://metacpan.org/pod/URI::Find" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-uri-find", "patches": [], "summary": "Find URIs in arbitrary text\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/MS/MSCHWERN/URI-Find-20160806.tar.gz" ], "version": "20160806" } ] }, "perl-uri-ws": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-uri" ], "downloads": [ "https://cpan.metacpan.org/authors/id/P/PL/PLICEASE/URI-ws-0.03.tar.gz" ], "homepages": [ "https://metacpan.org/pod/URI::ws" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-uri-ws", "patches": [], "summary": "WebSocket support for URI package\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/P/PL/PLICEASE/URI-ws-0.03.tar.gz" ], "version": "0.03" } ] }, "perl-want": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/R/RO/ROBIN/Want-0.29.tar.gz" ], "homepages": [ "https://metacpan.org/pod/Want" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-want", "patches": [], "summary": "A generalisation of wantarray.\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/R/RO/ROBIN/Want-0.29.tar.gz" ], "version": "0.29" } ] }, "perl-www-form-urlencoded": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/K/KA/KAZEBURO/WWW-Form-UrlEncoded-0.26.tar.gz" ], "homepages": [ "https://metacpan.org/pod/WWW::Form::UrlEncoded" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-www-form-urlencoded", "patches": [], "summary": "Parser and builder for application/x-www-form-urlencoded\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/K/KA/KAZEBURO/WWW-Form-UrlEncoded-0.26.tar.gz" ], "version": "0.26" } ] }, "perl-www-robotrules": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-uri" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/WWW-RobotRules-6.02.tar.gz" ], "homepages": [ "http://deps.cpantesters.org/?module=WWW%3A%3ARobotRules;perl=latest" ], "licenses": [], "maintainers": [], "name": "perl-www-robotrules", "patches": [], "summary": "Database of robots.txt-derived permissions\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/G/GA/GAAS/WWW-RobotRules-6.02.tar.gz" ], "version": "6.02" } ] }, "perl-xml-dom": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-libwww-perl", "perl-libxml-perl", "perl-xml-parser", "perl-xml-regexp" ], "downloads": [ "https://cpan.metacpan.org/authors/id/T/TJ/TJMATHER/XML-DOM-1.46.tar.gz" ], "homepages": [ "https://metacpan.org/pod/XML::DOM" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-xml-dom", "patches": [], "summary": "This module extends the XML::Parser module by Clark Cooper. The\nXML::Parser module is built on top of XML::Parser::Expat, which is a\nlower level interface to James Clark's expat library.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/T/TJ/TJMATHER/XML-DOM-1.46.tar.gz" ], "version": "1.46" } ] }, "perl-xml-dom-xpath": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-xml-dom", "perl-xml-xpathengine" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/MI/MIROD/XML-DOM-XPath-0.14.tar.gz" ], "homepages": [ "https://metacpan.org/pod/XML::DOM::XPath" ], "licenses": [], "maintainers": [], "name": "perl-xml-dom-xpath", "patches": [], "summary": "XML::DOM::XPath allows you to use XML::XPath methods to query a DOM.\nThis is often much easier than relying only on getElementsByTagName.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/MI/MIROD/XML-DOM-XPath-0.14.tar.gz" ], "version": "0.14" } ] }, "perl-xml-filter-buffertext": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/R/RB/RBERJON/XML-Filter-BufferText-1.01.tar.gz" ], "homepages": [ "https://metacpan.org/pod/XML::Filter::BufferText" ], "licenses": [], "maintainers": [], "name": "perl-xml-filter-buffertext", "patches": [], "summary": "This is a very simple filter. One common cause of grief (and programmer\nerror) is that XML parsers aren't required to provide character events\nin one chunk. They can, but are not forced to, and most don't. This\nfilter does the trivial but oft-repeated task of putting all characters\ninto a single event.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/R/RB/RBERJON/XML-Filter-BufferText-1.01.tar.gz" ], "version": "1.01" } ] }, "perl-xml-hash-xs": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/Y/YO/YOREEK/XML-Hash-XS-0.56.tar.gz" ], "homepages": [ "https://metacpan.org/pod/XML::Hash::XS" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-xml-hash-xs", "patches": [], "summary": "Simple and fast hash to XML and XML to hash conversion written in C\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/Y/YO/YOREEK/XML-Hash-XS-0.56.tar.gz" ], "version": "0.56" } ] }, "perl-xml-libxml": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "libxml2", "perl", "perl-alien-libxml2", "perl-xml-namespacesupport", "perl-xml-sax", "perl-xml-sax-base" ], "downloads": [ "https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/XML-LibXML-2.0210.tar.gz", "https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/XML-LibXML-2.0209.tar.gz", "https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/XML-LibXML-2.0201.tar.gz" ], "homepages": [ "https://metacpan.org/pod/XML::LibXML" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-xml-libxml", "patches": [], "summary": "This module is an interface to libxml2, providing XML and HTML parsers\nwith DOM, SAX and XMLReader interfaces, a large subset of DOM Layer 3\ninterface and a XML::XPath-like interface to XPath API of libxml2. The\nmodule is split into several packages which are not described in this\nsection; unless stated otherwise, you only need to use XML::LibXML; in\nyour programs.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/XML-LibXML-2.0201.tar.gz" ], "version": "2.0201" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/XML-LibXML-2.0209.tar.gz" ], "version": "2.0209" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/XML-LibXML-2.0210.tar.gz" ], "version": "2.0210" } ] }, "perl-xml-libxslt": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "libxslt", "perl", "perl-xml-libxml" ], "downloads": [ "https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/XML-LibXSLT-2.002001.tar.gz", "https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/XML-LibXSLT-1.96.tar.gz" ], "homepages": [ "https://metacpan.org/pod/XML::LibXSLT" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-xml-libxslt", "patches": [], "summary": "Interface to the GNOME libxslt library.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/XML-LibXSLT-1.96.tar.gz" ], "version": "1.96" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/XML-LibXSLT-2.002001.tar.gz" ], "version": "2.002001" } ] }, "perl-xml-namespacesupport": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/P/PE/PERIGRIN/XML-NamespaceSupport-1.12_9.tar.gz" ], "homepages": [ "https://metacpan.org/pod/XML::NamespaceSupport" ], "licenses": [ "GPL-1.0-or-later" ], "maintainers": [], "name": "perl-xml-namespacesupport", "patches": [], "summary": "This module offers a simple to process namespaced XML names (unames)\nfrom within any application that may need them. It also helps maintain a\nprefix to namespace URI map, and provides a number of basic checks.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/P/PE/PERIGRIN/XML-NamespaceSupport-1.12_9.tar.gz" ], "version": "1.12_9" } ] }, "perl-xml-parser": { "alias": [], "categories": [], "dependencies": [ "c", "expat", "gmake", "perl", "perl-libwww-perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/T/TO/TODDR/XML-Parser-2.47.tar.gz", "http://search.cpan.org/CPAN/authors/id/T/TO/TODDR/XML-Parser-2.46.tar.gz", "http://search.cpan.org/CPAN/authors/id/T/TO/TODDR/XML-Parser-2.44.tar.gz" ], "homepages": [ "https://metacpan.org/pod/XML::Parser" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-xml-parser", "patches": [], "summary": "XML::Parser - A perl module for parsing XML documents\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/T/TO/TODDR/XML-Parser-2.44.tar.gz" ], "version": "2.44" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/T/TO/TODDR/XML-Parser-2.46.tar.gz" ], "version": "2.46" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/T/TO/TODDR/XML-Parser-2.47.tar.gz" ], "version": "2.47" } ] }, "perl-xml-parser-lite": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-test-requires" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/P/PH/PHRED/XML-Parser-Lite-0.722.tar.gz", "http://search.cpan.org/CPAN/authors/id/P/PH/PHRED/XML-Parser-Lite-0.721.tar.gz" ], "homepages": [ "https://metacpan.org/pod/XML::Parser::Lite" ], "licenses": [], "maintainers": [], "name": "perl-xml-parser-lite", "patches": [], "summary": "Lightweight pure-perl XML Parser (based on regexps)\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/P/PH/PHRED/XML-Parser-Lite-0.721.tar.gz" ], "version": "0.721" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/P/PH/PHRED/XML-Parser-Lite-0.722.tar.gz" ], "version": "0.722" } ] }, "perl-xml-quote": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/G/GD/GDSL/XML-Quote-1.02.tar.gz" ], "homepages": [ "https://metacpan.org/pod/XML::Quote" ], "licenses": [], "maintainers": [], "name": "perl-xml-quote", "patches": [], "summary": "This module provides functions to quote/dequote strings in \"xml\"-way.\nAll functions are written in XS and are very fast; they correctly\nprocess utf8, tied, overloaded variables and all the rest of perl\n\"magic\".\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/G/GD/GDSL/XML-Quote-1.02.tar.gz" ], "version": "1.02" } ] }, "perl-xml-regexp": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/T/TJ/TJMATHER/XML-RegExp-0.04.tar.gz" ], "homepages": [ "https://metacpan.org/pod/XML::RegExp" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-xml-regexp", "patches": [], "summary": "This package contains regular expressions for the following XML tokens:\nBaseChar, Ideographic, Letter, Digit, Extender, CombiningChar, NameChar,\nEntityRef, CharRef, Reference, Name, NmToken, and AttValue.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/T/TJ/TJMATHER/XML-RegExp-0.04.tar.gz" ], "version": "0.04" } ] }, "perl-xml-sax": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-xml-namespacesupport", "perl-xml-sax-base" ], "downloads": [ "https://cpan.metacpan.org/authors/id/G/GR/GRANTM/XML-SAX-1.02.tar.gz" ], "homepages": [ "https://metacpan.org/pod/XML::SAX" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-xml-sax", "patches": [], "summary": "XML::SAX is a SAX parser access API for Perl. It includes classes and\nAPIs required for implementing SAX drivers, along with a factory class\nfor returning any SAX parser installed on the user's system.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/G/GR/GRANTM/XML-SAX-1.02.tar.gz" ], "version": "1.02" } ] }, "perl-xml-sax-base": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/G/GR/GRANTM/XML-SAX-Base-1.09.tar.gz" ], "homepages": [ "https://metacpan.org/pod/XML::SAX::Base" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-xml-sax-base", "patches": [], "summary": "This module has a very simple task - to be a base class for PerlSAX\ndrivers and filters. It's default behaviour is to pass the input\ndirectly to the output unchanged. It can be useful to use this module as\na base class so you don't have to, for example, implement the\ncharacters() callback.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/G/GR/GRANTM/XML-SAX-Base-1.09.tar.gz" ], "version": "1.09" } ] }, "perl-xml-sax-writer": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-xml-filter-buffertext", "perl-xml-namespacesupport", "perl-xml-sax-base" ], "downloads": [ "https://cpan.metacpan.org/authors/id/P/PE/PERIGRIN/XML-SAX-Writer-0.57.tar.gz" ], "homepages": [ "https://metacpan.org/pod/XML::SAX::Writer" ], "licenses": [ "Artistic-1.0" ], "maintainers": [], "name": "perl-xml-sax-writer", "patches": [], "summary": "A new XML Writer was needed to match the SAX2 effort because quite\nnaturally no existing writer understood SAX2. My first intention had\nbeen to start patching XML::Handler::YAWriter as it had previously been\nmy favourite writer in the SAX1 world.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/P/PE/PERIGRIN/XML-SAX-Writer-0.57.tar.gz" ], "version": "0.57" } ] }, "perl-xml-semanticdiff": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-xml-parser" ], "downloads": [ "https://cpan.metacpan.org/authors/id/P/PE/PERIGRIN/XML-SemanticDiff-1.0007.tar.gz" ], "homepages": [ "https://metacpan.org/pod/XML::SemanticDiff" ], "licenses": [ "Artistic-1.0-Perl OR GPL-1.0-or-later" ], "maintainers": [ "EbiArnie" ], "name": "perl-xml-semanticdiff", "patches": [], "summary": "Perl extension for comparing XML documents.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/P/PE/PERIGRIN/XML-SemanticDiff-1.0007.tar.gz" ], "version": "1.0007" } ] }, "perl-xml-simple": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-xml-parser" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/G/GR/GRANTM/XML-Simple-2.25.tar.gz", "http://search.cpan.org/CPAN/authors/id/G/GR/GRANTM/XML-Simple-2.24.tar.gz" ], "homepages": [ "https://metacpan.org/pod/XML::Simple" ], "licenses": [ "Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-xml-simple", "patches": [], "summary": "An API for simple XML files\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/G/GR/GRANTM/XML-Simple-2.24.tar.gz" ], "version": "2.24" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/G/GR/GRANTM/XML-Simple-2.25.tar.gz" ], "version": "2.25" } ] }, "perl-xml-twig": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-xml-parser" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/MI/MIROD/XML-Twig-3.52.tar.gz" ], "homepages": [ "https://metacpan.org/pod/XML::Twig" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-xml-twig", "patches": [ "non_interactive.patch" ], "summary": "This module provides a way to process XML documents. It is build on top\nof XML::Parser. The module offers a tree interface to the document,\nwhile allowing you to output the parts of it that have been completely\nprocessed. It allows minimal resource (CPU and memory) usage by building\nthe tree only for the parts of the documents that need actual\nprocessing, through the use of the twig_roots and\ntwig_print_outside_roots options. The finish and finish_print methods\nalso help to increase performances. XML::Twig tries to make simple\nthings easy so it tries its best to takes care of a lot of the (usually)\nannoying (but sometimes necessary) features that come with XML and\nXML::Parser.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/MI/MIROD/XML-Twig-3.52.tar.gz" ], "version": "3.52" } ] }, "perl-xml-writer": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/J/JO/JOSEPHW/XML-Writer-0.900.tar.gz", "https://cpan.metacpan.org/authors/id/J/JO/JOSEPHW/XML-Writer-0.625.tar.gz" ], "homepages": [ "https://metacpan.org/pod/XML::Writer" ], "licenses": [], "maintainers": [], "name": "perl-xml-writer", "patches": [], "summary": "XML::Writer is a helper module for Perl programs that write an XML\ndocument. The module handles all escaping for attribute values and\ncharacter data and constructs different types of markup, such as tags,\ncomments, and processing instructions. By default, the module performs\nseveral well-formedness checks to catch errors during output. This\nbehaviour can be extremely useful during development and debugging, but\nit can be turned off for production-grade code. The module can operate\neither in regular mode in or Namespace processing mode. In Namespace\nmode, the module will generate Namespace Declarations itself, and will\nperform additional checks on the output.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/J/JO/JOSEPHW/XML-Writer-0.625.tar.gz" ], "version": "0.625" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/J/JO/JOSEPHW/XML-Writer-0.900.tar.gz" ], "version": "0.900" } ] }, "perl-xml-xpath": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "perl-path-tiny", "perl-xml-parser" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/MA/MANWAR/XML-XPath-1.48.tar.gz" ], "homepages": [ "https://metacpan.org/pod/XML::XPath" ], "licenses": [ "Artistic-2.0" ], "maintainers": [ "EbiArnie" ], "name": "perl-xml-xpath", "patches": [], "summary": "Parse and evaluate XPath statements.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/MA/MANWAR/XML-XPath-1.48.tar.gz" ], "version": "1.48" } ] }, "perl-xml-xpathengine": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/M/MI/MIROD/XML-XPathEngine-0.14.tar.gz" ], "homepages": [ "https://metacpan.org/pod/XML::XPathEngine" ], "licenses": [], "maintainers": [], "name": "perl-xml-xpathengine", "patches": [], "summary": "This module provides an XPath engine, that can be re-used by other\nmodule/classes that implement trees.\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/M/MI/MIROD/XML-XPathEngine-0.14.tar.gz" ], "version": "0.14" } ] }, "perl-yaml": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/T/TI/TINITA/YAML-1.30.tar.gz", "https://cpan.metacpan.org/authors/id/T/TI/TINITA/YAML-1.27.tar.gz" ], "homepages": [ "https://metacpan.org/pod/YAML" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-yaml", "patches": [], "summary": "This module has been released to CPAN as YAML::Old, and soon YAML.pm\nwill be changed to just be a frontend interface module for all the\nvarious Perl YAML implementation modules, including YAML::Old\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/T/TI/TINITA/YAML-1.27.tar.gz" ], "version": "1.27" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/T/TI/TINITA/YAML-1.30.tar.gz" ], "version": "1.30" } ] }, "perl-yaml-libyaml": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "perl" ], "downloads": [ "http://search.cpan.org/CPAN/authors/id/T/TI/TINITA/YAML-LibYAML-0.89.tar.gz", "http://search.cpan.org/CPAN/authors/id/T/TI/TINITA/YAML-LibYAML-0.84.tar.gz", "http://search.cpan.org/CPAN/authors/id/T/TI/TINITA/YAML-LibYAML-0.67.tar.gz" ], "homepages": [ "https://metacpan.org/pod/YAML::LibYAML" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-yaml-libyaml", "patches": [], "summary": "Perl YAML Serialization using XS and libyaml\n", "version": [ { "downloads": [ "http://search.cpan.org/CPAN/authors/id/T/TI/TINITA/YAML-LibYAML-0.67.tar.gz" ], "version": "0.67" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/T/TI/TINITA/YAML-LibYAML-0.84.tar.gz" ], "version": "0.84" }, { "downloads": [ "http://search.cpan.org/CPAN/authors/id/T/TI/TINITA/YAML-LibYAML-0.89.tar.gz" ], "version": "0.89" } ] }, "perl-yaml-syck": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/T/TO/TODDR/YAML-Syck-1.34.tar.gz" ], "homepages": [ "https://metacpan.org/pod/YAML::Syck" ], "licenses": [ "MIT" ], "maintainers": [ "EbiArnie" ], "name": "perl-yaml-syck", "patches": [], "summary": "Fast, lightweight YAML loader and dumper\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/T/TO/TODDR/YAML-Syck-1.34.tar.gz" ], "version": "1.34" } ] }, "perl-yaml-tiny": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl" ], "downloads": [ "https://cpan.metacpan.org/authors/id/E/ET/ETHER/YAML-Tiny-1.74.tar.gz", "https://cpan.metacpan.org/authors/id/E/ET/ETHER/YAML-Tiny-1.73.tar.gz" ], "homepages": [ "https://metacpan.org/pod/YAML::Tiny" ], "licenses": [ "GPL-1.0-or-later OR Artistic-1.0-Perl" ], "maintainers": [], "name": "perl-yaml-tiny", "patches": [], "summary": "YAML::Tiny - Read/Write YAML files with as little code as possible\n", "version": [ { "downloads": [ "https://cpan.metacpan.org/authors/id/E/ET/ETHER/YAML-Tiny-1.73.tar.gz" ], "version": "1.73" }, { "downloads": [ "https://cpan.metacpan.org/authors/id/E/ET/ETHER/YAML-Tiny-1.74.tar.gz" ], "version": "1.74" } ] }, "pestpp": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "mpi", "ninja" ], "downloads": [ "https://github.com/usgs/pestpp/archive/5.2.9.tar.gz", "https://github.com/usgs/pestpp/archive/5.2.3.tar.gz", "https://github.com/usgs/pestpp/archive/5.0.5.tar.gz" ], "homepages": [ "https://pesthomepage.org" ], "licenses": [], "maintainers": [], "name": "pestpp", "patches": [], "summary": "PEST++ is a software suite aimed at supporting complex numerical models\nin the decision-support context. Much focus has been devoted to\nsupporting environmental models (groundwater, surface water, etc) but\nthese tools are readily applicable to any computer model.\n", "version": [ { "downloads": [ "https://github.com/usgs/pestpp/archive/5.0.5.tar.gz" ], "version": "5.0.5" }, { "downloads": [ "https://github.com/usgs/pestpp/archive/5.2.3.tar.gz" ], "version": "5.2.3" }, { "downloads": [ "https://github.com/usgs/pestpp/archive/5.2.9.tar.gz" ], "version": "5.2.9" } ] }, "petaca": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "fortran", "gmake", "ninja", "yajl" ], "downloads": [ "https://github.com/nncarlson/petaca/archive/refs/tags/vdevelop.tar.gz", "https://github.com/nncarlson/petaca/archive/refs/tags/v25.06.tar.gz", "https://github.com/nncarlson/petaca/archive/refs/tags/v25.05.tar.gz", "https://github.com/nncarlson/petaca/archive/refs/tags/v24.12.tar.gz", "https://github.com/nncarlson/petaca/archive/refs/tags/v24.04.tar.gz", "https://github.com/nncarlson/petaca/archive/refs/tags/v23.12.tar.gz", "https://github.com/nncarlson/petaca/archive/refs/tags/v23.11.1.tar.gz", "https://github.com/nncarlson/petaca/archive/refs/tags/v23.11.tar.gz", "https://github.com/nncarlson/petaca/archive/refs/tags/v22.03.tar.gz", "https://github.com/nncarlson/petaca/archive/refs/tags/v21.03.tar.gz", "https://github.com/nncarlson/petaca.git" ], "homepages": [ "https://petaca.readthedocs.io/en/master" ], "licenses": [ "MIT" ], "maintainers": [ "pbrady", "zjibben" ], "name": "petaca", "patches": [], "summary": "A collection of modern Fortran modules. Modules include: - Parameter\nlists - map_any_type - fortran_dynamic_loader - timer_tree_type -\nyajl_fort - json\n", "version": [ { "repositories": [ { "commit": "f17df95193ca1a3879687a59a91a123be25e3efa", "type": "git", "url": "https://github.com/nncarlson/petaca.git" } ], "version": "21.03" }, { "downloads": [ "https://github.com/nncarlson/petaca/archive/refs/tags/v22.03.tar.gz" ], "version": "22.03" }, { "downloads": [ "https://github.com/nncarlson/petaca/archive/refs/tags/v23.11.tar.gz" ], "version": "23.11" }, { "downloads": [ "https://github.com/nncarlson/petaca/archive/refs/tags/v23.11.1.tar.gz" ], "version": "23.11.1" }, { "downloads": [ "https://github.com/nncarlson/petaca/archive/refs/tags/v23.12.tar.gz" ], "version": "23.12" }, { "downloads": [ "https://github.com/nncarlson/petaca/archive/refs/tags/v24.04.tar.gz" ], "version": "24.04" }, { "downloads": [ "https://github.com/nncarlson/petaca/archive/refs/tags/v24.12.tar.gz" ], "version": "24.12" }, { "downloads": [ 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The Pole\nEXpansion and Selected Inversion (PEXSI) method is a fast method for\nelectronic structure calculation based on Kohn-Sham density functional\ntheory. It efficiently evaluates certain selected elements of matrix\nfunctions, e.g., the Fermi-Dirac function of the KS Hamiltonian, which\nyields a density matrix. It can be used as an alternative to\ndiagonalization methods for obtaining the density, energy and forces in\nelectronic structure calculations.\n", "version": [ { "downloads": [ "https://bitbucket.org/berkeleylab/pexsi/downloads/pexsi_v0.10.2.tar.gz" ], "version": "0.10.2" }, { "downloads": [ "https://bitbucket.org/berkeleylab/pexsi/downloads/pexsi_v0.9.0.tar.gz" ], "version": "0.9.0" }, { "downloads": [ "https://bitbucket.org/berkeleylab/pexsi/downloads/pexsi_v1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://bitbucket.org/berkeleylab/pexsi/downloads/pexsi_v2.0.0.tar.gz" ], "version": "2.0.0" } ] }, "pfapack": { "alias": [], "categories": [], "dependencies": [ "blas", "c", "cxx", "fortran", "gmake", "lapack", "py-numpy", "py-scipy", "python" ], "downloads": [ "https://michaelwimmer.org/pfapack.tgz" ], "homepages": [ "https://michaelwimmer.org/downloads.html" ], "licenses": [], "maintainers": [], "name": "pfapack", "patches": [], "summary": "A library for numerically computing the Pfaffian of a real or complex\nskew-symmetric matrix. 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PFFT can be\nunderstood as a generalization of FFTW-MPI to multidimensional data\ndecomposition.\n", "version": [ { "downloads": [ "https://www-user.tu-chemnitz.de/~potts/workgroup/pippig/software/pfft-1.0.8-alpha.tar.gz" ], "version": "1.0.8-alpha" } ] }, "pfind": { "alias": [], "categories": [], "dependencies": [ "mpi" ], "downloads": [ "https://github.com/VI4IO/pfind.git" ], "homepages": [ "https://github.com/VI4IO/pfind" ], "licenses": [], "maintainers": [], "name": "pfind", "patches": [], "summary": " The tool provides parallel access to a single directory. However, this\nfeature depends on the distribution of the \"cookie\" returned by\ntelldir(). Depending on the system, it may work.\n", "version": [ { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/VI4IO/pfind.git" } ], "version": "main" } ] }, "pflask": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "gmake", "ninja" ], "downloads": [ "https://github.com/ghedo/pflask/archive/v0.2.tar.gz", "https://github.com/ghedo/pflask/archive/v0.1.tar.gz" ], "homepages": [ "https://ghedo.github.io/pflask/" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "pflask", "patches": [], "summary": "Pflask is a simple tool for creating process containers on LInux.\n", "version": [ { "downloads": [ "https://github.com/ghedo/pflask/archive/v0.1.tar.gz" ], "version": "0.1" }, { "downloads": [ "https://github.com/ghedo/pflask/archive/v0.2.tar.gz" ], "version": "0.2" } ] }, "pflogger": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "fortran", "gcc", "gftl", "gftl-shared", "gmake", "mpi", "ninja", "yafyaml" 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The PMERGE is embedded in the analysis pipeline of the\nwidely used Stacks software, and it is straightforward to apply it as an\nadditional filter in population-genomic studies using RAD-seq data.\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/beiko-lab/PMERGE.git" } ], "version": "master" } ] }, "pmgr-collective": { "alias": [], "categories": [], "dependencies": [ "c", "gmake" ], "downloads": [ "https://downloads.sourceforge.net/project/pmgrcollective/pmgrcollective/PMGR_COLLECTIVE-1.0/pmgr_collective-1.0.tgz" ], "homepages": [ "https://www.sourceforge.net/projects/pmgrcollective" ], "licenses": [], "maintainers": [], "name": "pmgr-collective", "patches": [], "summary": "PMGR_COLLECTIVE provides a scalable network for bootstrapping MPI jobs.\n", "version": [ { "downloads": [ "https://downloads.sourceforge.net/project/pmgrcollective/pmgrcollective/PMGR_COLLECTIVE-1.0/pmgr_collective-1.0.tgz" ], "version": "1.0" } ] }, "pmix": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "curl", "flex", "gmake", "gnuconfig", "hwloc", "jansson", "libevent", "libtool", "m4", "munge", "perl", "pkgconfig", "py-cython", "py-docutils", "py-recommonmark", "py-setuptools", "py-sphinx", "py-sphinx-rtd-theme", "python", "zlib-api" ], "downloads": [ "https://github.com/openpmix/openpmix/releases/download/vmaster/pmix-master.tar.bz2", "https://github.com/openpmix/openpmix/releases/download/v6.0.0/pmix-6.0.0.tar.bz2", "https://github.com/openpmix/openpmix/releases/download/v5.0.8/pmix-5.0.8.tar.bz2", "https://github.com/openpmix/openpmix/releases/download/v5.0.7/pmix-5.0.7.tar.bz2", "https://github.com/openpmix/openpmix/releases/download/v5.0.6/pmix-5.0.6.tar.bz2", "https://github.com/openpmix/openpmix/releases/download/v5.0.5/pmix-5.0.5.tar.bz2", "https://github.com/openpmix/openpmix/releases/download/v5.0.4/pmix-5.0.4.tar.bz2", "https://github.com/openpmix/openpmix/releases/download/v5.0.3/pmix-5.0.3.tar.bz2", "https://github.com/openpmix/openpmix/releases/download/v5.0.2/pmix-5.0.2.tar.bz2", "https://github.com/openpmix/openpmix/releases/download/v5.0.1/pmix-5.0.1.tar.bz2", "https://github.com/openpmix/openpmix/releases/download/v5.0.0/pmix-5.0.0.tar.bz2", "https://github.com/openpmix/openpmix/releases/download/v4.2.9/pmix-4.2.9.tar.bz2", "https://github.com/openpmix/openpmix/releases/download/v4.2.8/pmix-4.2.8.tar.bz2", "https://github.com/openpmix/openpmix/releases/download/v4.2.7/pmix-4.2.7.tar.bz2", "https://github.com/openpmix/openpmix/releases/download/v4.2.6/pmix-4.2.6.tar.bz2", "https://github.com/openpmix/openpmix/releases/download/v4.2.5/pmix-4.2.5.tar.bz2", "https://github.com/openpmix/openpmix/releases/download/v4.2.4/pmix-4.2.4.tar.bz2", "https://github.com/openpmix/openpmix/releases/download/v4.2.3/pmix-4.2.3.tar.bz2", "https://github.com/openpmix/openpmix/releases/download/v4.2.2/pmix-4.2.2.tar.bz2", "https://github.com/openpmix/openpmix/releases/download/v4.2.1/pmix-4.2.1.tar.bz2", "https://github.com/openpmix/openpmix.git" ], "homepages": [ "https://openpmix.github.io/" ], "licenses": [ "BSD-3-Clause-Open-MPI" ], "maintainers": [], "name": "pmix", "patches": [], "summary": "The Process Management Interface (PMI) has been used for quite some time\nas a means of exchanging wireup information needed for interprocess\ncommunication. However, meeting the significant orchestration challenges\npresented by exascale systems requires that the process-to-system\ninterface evolve to permit a tighter integration between the different\ncomponents of the parallel application and existing and future SMS\nsolutions. PMI Exascale (PMIx) addresses these needs by providing an\nextended version of the PMI definitions specifically designed to support\nexascale and beyond environments by: (a) adding flexibility to the\nfunctionality expressed in the existing APIs, (b) augmenting the\ninterfaces with new APIs that provide extended capabilities, (c) forging\na collaboration between subsystem providers including resource manager,\nfabric, file system, and programming library developers, (d)\nestablishing a standards-like body for maintaining the definitions, and\n(e) providing a reference implementation of the PMIx standard that\ndemonstrates the desired level of scalability while maintaining strict\nseparation between it and the standard itself.\n", "version": [ { "downloads": [ "https://github.com/openpmix/openpmix/releases/download/v4.2.1/pmix-4.2.1.tar.bz2" ], "version": "4.2.1" }, { "downloads": [ "https://github.com/openpmix/openpmix/releases/download/v4.2.2/pmix-4.2.2.tar.bz2" ], "version": "4.2.2" }, { "downloads": [ "https://github.com/openpmix/openpmix/releases/download/v4.2.3/pmix-4.2.3.tar.bz2" ], "version": "4.2.3" }, { "downloads": [ "https://github.com/openpmix/openpmix/releases/download/v4.2.4/pmix-4.2.4.tar.bz2" ], "version": "4.2.4" }, { "downloads": [ "https://github.com/openpmix/openpmix/releases/download/v4.2.5/pmix-4.2.5.tar.bz2" ], "version": "4.2.5" }, { "downloads": [ "https://github.com/openpmix/openpmix/releases/download/v4.2.6/pmix-4.2.6.tar.bz2" ], "version": "4.2.6" }, { "downloads": [ "https://github.com/openpmix/openpmix/releases/download/v4.2.7/pmix-4.2.7.tar.bz2" ], "version": "4.2.7" }, { "downloads": [ "https://github.com/openpmix/openpmix/releases/download/v4.2.8/pmix-4.2.8.tar.bz2" ], "version": "4.2.8" }, { "downloads": [ "https://github.com/openpmix/openpmix/releases/download/v4.2.9/pmix-4.2.9.tar.bz2" ], "version": "4.2.9" }, { "downloads": [ "https://github.com/openpmix/openpmix/releases/download/v5.0.0/pmix-5.0.0.tar.bz2" ], "version": "5.0.0" }, { "downloads": [ "https://github.com/openpmix/openpmix/releases/download/v5.0.1/pmix-5.0.1.tar.bz2" ], "version": "5.0.1" }, { "downloads": [ "https://github.com/openpmix/openpmix/releases/download/v5.0.2/pmix-5.0.2.tar.bz2" ], "version": "5.0.2" }, { "downloads": [ "https://github.com/openpmix/openpmix/releases/download/v5.0.3/pmix-5.0.3.tar.bz2" ], "version": "5.0.3" }, { "downloads": [ "https://github.com/openpmix/openpmix/releases/download/v5.0.4/pmix-5.0.4.tar.bz2" ], "version": "5.0.4" }, { "downloads": [ "https://github.com/openpmix/openpmix/releases/download/v5.0.5/pmix-5.0.5.tar.bz2" ], "version": "5.0.5" }, { "downloads": [ "https://github.com/openpmix/openpmix/releases/download/v5.0.6/pmix-5.0.6.tar.bz2" ], "version": "5.0.6" }, { "downloads": [ "https://github.com/openpmix/openpmix/releases/download/v5.0.7/pmix-5.0.7.tar.bz2" ], "version": "5.0.7" }, { "downloads": [ "https://github.com/openpmix/openpmix/releases/download/v5.0.8/pmix-5.0.8.tar.bz2" ], "version": "5.0.8" }, { "downloads": [ "https://github.com/openpmix/openpmix/releases/download/v6.0.0/pmix-6.0.0.tar.bz2" ], "version": "6.0.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/openpmix/openpmix.git" } ], "version": "master" } ] }, "pmlib": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "mpi", "ninja" ], "downloads": [ "https://github.com/avr-aics-riken/PMlib.git" ], "homepages": [ "https://github.com/avr-aics-riken/PMlib" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "pmlib", "patches": [ "fix_compiler_options.patch" ], "summary": "This library records the statistics information of run-time performance\nand the trace information of a user code and reports its summary. The\nPMlib is able to use for both serial and parallel environments including\nhybrid(OpenMP & MPI) code. In addition, PAPI interface allows us to\naccess the information of build-in hardware counter.\n", "version": [ { "repositories": [ { "commit": "0a35f5bec8c12e532e5a1bdac8c32c659fd3ee11", "type": "git", "url": "https://github.com/avr-aics-riken/PMlib.git" } ], "version": "6.4.1" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/avr-aics-riken/PMlib.git" } ], "version": "master" } ] }, "pnfft": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "gnuconfig", "gsl", "pfft" ], "downloads": [ "https://www-user.tu-chemnitz.de/~potts/workgroup/pippig/software/pnfft-1.0.7-alpha.tar.gz" ], "homepages": [ "https://www-user.tu-chemnitz.de/~potts/workgroup/pippig/software.php.en" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "pnfft", "patches": [], "summary": "PNFFT is a parallel software library for the calculation of three-\ndimensional nonequispaced FFTs.\n", "version": [ { "downloads": [ "https://www-user.tu-chemnitz.de/~potts/workgroup/pippig/software/pnfft-1.0.7-alpha.tar.gz" ], "version": "1.0.7-alpha" } ] }, "pngquant": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libpng" ], "downloads": [ "https://pngquant.org/pngquant-2.12.5-src.tar.gz" ], "homepages": [ "https://pngquant.org/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "pngquant", "patches": [], "summary": " pngquant is a command-line utility and a library for lossy compression\nof PNG images.\n", "version": [ { "downloads": [ "https://pngquant.org/pngquant-2.12.5-src.tar.gz" ], "version": "2.12.5" } ] }, "pngwriter": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "freetype", "gmake", "libpng", "ninja", "zlib-api" ], "downloads": [ "https://github.com/pngwriter/pngwriter/archive/develop.tar.gz", "https://github.com/pngwriter/pngwriter/archive/master.tar.gz", "https://github.com/pngwriter/pngwriter/archive/0.7.0.tar.gz", "https://github.com/pngwriter/pngwriter/archive/0.6.0.tar.gz", "https://github.com/pngwriter/pngwriter/archive/0.5.6.tar.gz", "https://github.com/pngwriter/pngwriter.git" ], "homepages": [ "https://pngwriter.sourceforge.net/" ], "licenses": [], "maintainers": [ "ax3l" ], "name": "pngwriter", "patches": [], "summary": "PNGwriter is a very easy to use open source graphics library that uses\nPNG as its output format. The interface has been designed to be as\nsimple and intuitive as possible. It supports plotting and reading\npixels in the RGB (red, green, blue), HSV (hue, saturation,\nvalue/brightness) and CMYK (cyan, magenta, yellow, black) colour spaces,\nbasic shapes, scaling, bilinear interpolation, full TrueType antialiased\nand rotated text support, bezier curves, opening existing PNG images and\nmore.\n", "version": [ { "downloads": [ "https://github.com/pngwriter/pngwriter/archive/0.5.6.tar.gz" ], "version": "0.5.6" }, { "downloads": [ "https://github.com/pngwriter/pngwriter/archive/0.6.0.tar.gz" ], "version": "0.6.0" }, { "downloads": [ "https://github.com/pngwriter/pngwriter/archive/0.7.0.tar.gz" ], "version": "0.7.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/pngwriter/pngwriter.git" } ], "version": "develop" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/pngwriter/pngwriter.git" } ], "version": "master" } ] }, "pnmpi": { "alias": [], "categories": [], "dependencies": [ "argp-standalone", "binutils", "c", "cmake", "cxx", "doxygen", "fortran", "gmake", "help2man", "mpi", "ninja" ], "downloads": [ "https://github.com/LLNL/PnMPI/releases/download/v1.7/PnMPI-v1.7-full.tar.gz" ], "homepages": [ "https://github.com/LLNL/PnMPI" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "pnmpi", "patches": [], "summary": "PnMPI is a dynamic MPI tool infrastructure that builds on top of the\nstandardized PMPI interface.\n", "version": [ { "downloads": [ "https://github.com/LLNL/PnMPI/releases/download/v1.7/PnMPI-v1.7-full.tar.gz" ], "version": "1.7" } ] }, "poamsa": { "alias": [], "categories": [], "dependencies": [ "c", "gmake" ], "downloads": [ "https://downloads.sourceforge.net/project/poamsa/poamsa/2.0/poaV2.tar.gz" ], "homepages": [ "https://sourceforge.net/projects/poamsa/" ], "licenses": [], "maintainers": [], "name": "poamsa", "patches": [], "summary": "POA is Partial Order Alignment, a fast program for multiple sequence\nalignment in bioinformatics. Its advantages are speed, scalability,\nsensitivity, and the superior ability to handle branching / indels in\nthe alignment.\n", "version": [ { "downloads": [ "https://downloads.sourceforge.net/project/poamsa/poamsa/2.0/poaV2.tar.gz" ], "version": "2.0" } ] }, "pocl": { "alias": [ { "alias_for": "pocl ^llvm@:13", "name": "opencl" }, { "alias_for": "pocl@3: ^llvm@14:", "name": "opencl" } ], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "hwloc", "libtool", "llvm", "ninja", "ocl-icd", "pkgconfig" ], "downloads": [ "https://github.com/pocl/pocl/archive/v1.1.tar.gz", "https://github.com/pocl/pocl.git" ], "homepages": [ "https://portablecl.org" ], "licenses": [ "MIT" ], "maintainers": [], "name": "pocl", "patches": [], "summary": "Portable Computing Language (pocl) is an open source implementation of\nthe OpenCL standard which can be easily adapted for new targets and\ndevices, both for homogeneous CPU and heterogeneous GPUs/accelerators.\n", "version": [ { "downloads": 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This allows it to repair errors in repeat regions that\nother alignment-based polishers cannot fix.\n", "version": [ { "downloads": [ "https://github.com/rrwick/Polypolish/archive/refs/tags/v0.5.0.tar.gz" ], "version": "0.5.0" } ] }, "poorjit": { "alias": [], "categories": [], "dependencies": [ "boost", "cmake", "cxx", "fmt", "gmake", "ninja", "zlib" ], "downloads": [ "https://github.com/robertu94/poorjit/archive/refs/tags/0.0.2.tar.gz", "https://github.com/robertu94/poorjit" ], "homepages": [ "https://github.com/robertu94/poorjit" ], "licenses": [ "BSD-4-Clause" ], "maintainers": [ "robertu94" ], "name": "poorjit", "patches": [], "summary": "A poorman's JIT library\n", "version": [ { "downloads": [ "https://github.com/robertu94/poorjit/archive/refs/tags/0.0.2.tar.gz" ], "version": "0.0.2" } ] }, "poplddecay": { "alias": [], "categories": [], "dependencies": [ "gmake" ], "downloads": [ "https://github.com/BGI-shenzhen/PopLDdecay/archive/v3.41.tar.gz", "https://github.com/BGI-shenzhen/PopLDdecay/archive/v3.40.tar.gz" ], "homepages": [ "https://github.com/BGI-shenzhen/PopLDdecay" ], "licenses": [ "MIT" ], "maintainers": [ "robqiao" ], "name": "poplddecay", "patches": [], "summary": " PopLDdecay: a fast and effective tool for linkage disequilibrium decay\nanalysis based on variant call format files\n", "version": [ { "downloads": [ "https://github.com/BGI-shenzhen/PopLDdecay/archive/v3.40.tar.gz" ], "version": "3.40" }, { "downloads": [ "https://github.com/BGI-shenzhen/PopLDdecay/archive/v3.41.tar.gz" ], "version": "3.41" } ] }, "poppler": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "cairo", "cmake", "curl", "cxx", "fontconfig", "freetype", "glib", "gmake", "gobject-introspection", "gpgme", "iconv", "jpeg", "lcms", "libpng", "libtiff", "ninja", "nss", "openjpeg", "pkgconfig", "poppler-data", "qt", "zlib-api" ], "downloads": [ "https://poppler.freedesktop.org/poppler-master.tar.xz", "https://poppler.freedesktop.org/poppler-25.08.0.tar.xz", "https://poppler.freedesktop.org/poppler-23.04.0.tar.xz", "https://poppler.freedesktop.org/poppler-21.09.0.tar.xz", "https://poppler.freedesktop.org/poppler-21.07.0.tar.xz", "https://poppler.freedesktop.org/poppler-0.90.1.tar.xz", "https://poppler.freedesktop.org/poppler-0.87.0.tar.xz", "https://poppler.freedesktop.org/poppler-0.79.0.tar.xz", "https://poppler.freedesktop.org/poppler-0.77.0.tar.xz", "https://poppler.freedesktop.org/poppler-0.72.0.tar.xz", "https://poppler.freedesktop.org/poppler-0.65.0.tar.xz", "https://poppler.freedesktop.org/poppler-0.64.0.tar.xz", "https://poppler.freedesktop.org/poppler-0.61.1.tar.xz", "https://gitlab.freedesktop.org/poppler/poppler.git" ], "homepages": [ "https://poppler.freedesktop.org" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [ "cessenat" ], "name": "poppler", "patches": [ "poppler_page_splash.patch when @0.64.0:0.90.0 ^qt@5.0:", "poppler_page_splash.0.90.1.patch when @0.90.1:21.6 ^qt@5.0:" ], "summary": "Poppler is a PDF rendering library based on the xpdf-3.0 code base.\n", "version": [ { "downloads": [ "https://poppler.freedesktop.org/poppler-0.61.1.tar.xz" ], "version": "0.61.1" }, { "downloads": [ "https://poppler.freedesktop.org/poppler-0.64.0.tar.xz" ], "version": "0.64.0" }, { "downloads": [ "https://poppler.freedesktop.org/poppler-0.65.0.tar.xz" ], "version": "0.65.0" }, { "downloads": [ "https://poppler.freedesktop.org/poppler-0.72.0.tar.xz" ], "version": "0.72.0" }, { "downloads": [ "https://poppler.freedesktop.org/poppler-0.77.0.tar.xz" ], "version": "0.77.0" }, { "downloads": [ "https://poppler.freedesktop.org/poppler-0.79.0.tar.xz" ], "version": "0.79.0" }, { "downloads": [ "https://poppler.freedesktop.org/poppler-0.87.0.tar.xz" ], "version": "0.87.0" }, { "downloads": [ "https://poppler.freedesktop.org/poppler-0.90.1.tar.xz" ], "version": "0.90.1" }, { "downloads": [ "https://poppler.freedesktop.org/poppler-21.07.0.tar.xz" ], "version": "21.07.0" }, { "downloads": [ "https://poppler.freedesktop.org/poppler-21.09.0.tar.xz" ], "version": "21.09.0" }, { "downloads": [ "https://poppler.freedesktop.org/poppler-23.04.0.tar.xz" ], "version": "23.04.0" }, { "downloads": [ "https://poppler.freedesktop.org/poppler-25.08.0.tar.xz" ], "version": "25.08.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://gitlab.freedesktop.org/poppler/poppler.git" } ], "version": "master" } ] }, "poppler-data": { "alias": [], "categories": [], "dependencies": [ "cmake", "gmake", "ninja" ], "downloads": [ "https://poppler.freedesktop.org/poppler-data-0.4.12.tar.gz", "https://poppler.freedesktop.org/poppler-data-0.4.9.tar.gz" ], "homepages": [ "https://poppler.freedesktop.org/" ], "licenses": [ "GPL-2.0-or-later AND BSD-3-Clause AND MIT" ], "maintainers": [], "name": "poppler-data", "patches": [], "summary": "This package consists of encoding files for use with poppler. 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It takes advantage of the species overlap\nalgorithm implemented in the ETE toolkit to parse the phylogeny and\nidentify orthologous gene pairs, and MCL clustering for orthogroup\nidentification.\n", "version": [ { "repositories": [ { "commit": "3158757423edafc29aa29bf3ae0cc63a93a56df9", "type": "git", "url": "https://github.com/xgrau/possvm-orthology.git" } ], "version": "1.2" } ] }, "postgis": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gdal", "geos", "gmake", "gnuconfig", "json-c", "libxml2", "pcre", "perl", "postgresql", "proj", "protobuf-c", "sfcgal" ], "downloads": [ "https://download.osgeo.org/postgis/source/postgis-3.1.2.tar.gz", "https://download.osgeo.org/postgis/source/postgis-3.0.1.tar.gz", "https://download.osgeo.org/postgis/source/postgis-3.0.0.tar.gz", "https://download.osgeo.org/postgis/source/postgis-2.5.3.tar.gz" ], "homepages": [ "https://postgis.net/" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "postgis", "patches": [], "summary": " PostGIS is a spatial database extender for PostgreSQL object-relational\ndatabase. It adds support for geographic objects allowing location\nqueries to be run in SQL\n", "version": [ { "downloads": [ "https://download.osgeo.org/postgis/source/postgis-2.5.3.tar.gz" ], "version": "2.5.3" }, { "downloads": [ "https://download.osgeo.org/postgis/source/postgis-3.0.0.tar.gz" ], "version": "3.0.0" }, { "downloads": [ "https://download.osgeo.org/postgis/source/postgis-3.0.1.tar.gz" ], "version": "3.0.1" }, { "downloads": [ "https://download.osgeo.org/postgis/source/postgis-3.1.2.tar.gz" ], "version": "3.1.2" } ] }, "postgresql": { "alias": [], "categories": [], "dependencies": [ "bison", "c", "cxx", "flex", "gmake", "gnuconfig", "icu4c", "libedit", "libxml2", "openssl", "perl", "pkgconfig", "python", "readline", "tcl" ], "downloads": [ "https://ftp.postgresql.org/pub/source/v18.0/postgresql-18.0.tar.bz2", "https://ftp.postgresql.org/pub/source/v17.6/postgresql-17.6.tar.bz2", "https://ftp.postgresql.org/pub/source/v17.2/postgresql-17.2.tar.bz2", "https://ftp.postgresql.org/pub/source/v16.4/postgresql-16.4.tar.bz2", "https://ftp.postgresql.org/pub/source/v16.3/postgresql-16.3.tar.bz2", "https://ftp.postgresql.org/pub/source/v15.8/postgresql-15.8.tar.bz2", "https://ftp.postgresql.org/pub/source/v15.2/postgresql-15.2.tar.bz2", "https://ftp.postgresql.org/pub/source/v14.13/postgresql-14.13.tar.bz2", "https://ftp.postgresql.org/pub/source/v14.0/postgresql-14.0.tar.bz2", "https://ftp.postgresql.org/pub/source/v13.16/postgresql-13.16.tar.bz2", "https://ftp.postgresql.org/pub/source/v13.1/postgresql-13.1.tar.bz2", "https://ftp.postgresql.org/pub/source/v12.20/postgresql-12.20.tar.bz2", "https://ftp.postgresql.org/pub/source/v12.2/postgresql-12.2.tar.bz2", "https://ftp.postgresql.org/pub/source/v11.2/postgresql-11.2.tar.bz2", "https://ftp.postgresql.org/pub/source/v11.1/postgresql-11.1.tar.bz2", "https://ftp.postgresql.org/pub/source/v11.0/postgresql-11.0.tar.bz2", "https://ftp.postgresql.org/pub/source/v10.7/postgresql-10.7.tar.bz2", "https://ftp.postgresql.org/pub/source/v10.6/postgresql-10.6.tar.bz2", "https://ftp.postgresql.org/pub/source/v10.5/postgresql-10.5.tar.bz2", "https://ftp.postgresql.org/pub/source/v10.4/postgresql-10.4.tar.bz2", "https://ftp.postgresql.org/pub/source/v10.3/postgresql-10.3.tar.bz2", "https://ftp.postgresql.org/pub/source/v10.2/postgresql-10.2.tar.bz2", "https://ftp.postgresql.org/pub/source/v10.1/postgresql-10.1.tar.bz2", "https://ftp.postgresql.org/pub/source/v10.0/postgresql-10.0.tar.bz2", "https://ftp.postgresql.org/pub/source/v9.6.12/postgresql-9.6.12.tar.bz2", "https://ftp.postgresql.org/pub/source/v9.6.11/postgresql-9.6.11.tar.bz2", "https://ftp.postgresql.org/pub/source/v9.5.3/postgresql-9.5.3.tar.bz2", "https://ftp.postgresql.org/pub/source/v9.3.4/postgresql-9.3.4.tar.bz2" ], "homepages": [ "https://www.postgresql.org/" ], "licenses": [ "PostgreSQL" ], "maintainers": [], "name": "postgresql", "patches": [], "summary": "PostgreSQL is a powerful, open source object-relational database system.\nIt has more than 15 years of active development and a proven\narchitecture that has earned it a strong reputation for reliability,\ndata integrity, and correctness.\n", "version": [ { "downloads": [ "https://ftp.postgresql.org/pub/source/v10.0/postgresql-10.0.tar.bz2" ], "version": "10.0" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v10.1/postgresql-10.1.tar.bz2" ], "version": "10.1" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v10.2/postgresql-10.2.tar.bz2" ], "version": "10.2" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v10.3/postgresql-10.3.tar.bz2" ], "version": "10.3" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v10.4/postgresql-10.4.tar.bz2" ], "version": "10.4" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v10.5/postgresql-10.5.tar.bz2" ], "version": "10.5" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v10.6/postgresql-10.6.tar.bz2" ], "version": "10.6" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v10.7/postgresql-10.7.tar.bz2" ], "version": "10.7" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v11.0/postgresql-11.0.tar.bz2" ], "version": "11.0" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v11.1/postgresql-11.1.tar.bz2" ], "version": "11.1" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v11.2/postgresql-11.2.tar.bz2" ], "version": "11.2" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v12.2/postgresql-12.2.tar.bz2" ], "version": "12.2" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v12.20/postgresql-12.20.tar.bz2" ], "version": "12.20" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v13.1/postgresql-13.1.tar.bz2" ], "version": "13.1" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v13.16/postgresql-13.16.tar.bz2" ], "version": "13.16" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v14.0/postgresql-14.0.tar.bz2" ], "version": "14.0" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v14.13/postgresql-14.13.tar.bz2" ], "version": "14.13" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v15.2/postgresql-15.2.tar.bz2" ], "version": "15.2" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v15.8/postgresql-15.8.tar.bz2" ], "version": "15.8" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v16.3/postgresql-16.3.tar.bz2" ], "version": "16.3" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v16.4/postgresql-16.4.tar.bz2" ], "version": "16.4" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v17.2/postgresql-17.2.tar.bz2" ], "version": "17.2" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v17.6/postgresql-17.6.tar.bz2" ], "version": "17.6" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v18.0/postgresql-18.0.tar.bz2" ], "version": "18.0" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v9.3.4/postgresql-9.3.4.tar.bz2" ], "version": "9.3.4" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v9.5.3/postgresql-9.5.3.tar.bz2" ], "version": "9.5.3" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v9.6.11/postgresql-9.6.11.tar.bz2" ], "version": "9.6.11" }, { "downloads": [ "https://ftp.postgresql.org/pub/source/v9.6.12/postgresql-9.6.12.tar.bz2" ], "version": "9.6.12" } ] }, "povray": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "boost", "c", "cxx", "gmake", "gnuconfig", "jpeg", "libpng", "libtiff", "m4", "mkl", "openexr", "perl", "zlib-api" ], "downloads": [ "https://github.com/POV-Ray/povray/archive/v3.7.0.10.tar.gz", "https://github.com/POV-Ray/povray.git" ], "homepages": [ "http://povray.org/download/" ], "licenses": [ "AGPL-3.0-or-later" ], "maintainers": [], "name": "povray", "patches": [ "fix_prebuild.sh.patch" ], "summary": "The Persistence of Vision Raytracer creates three-dimensional, photo-\nrealistic images using a rendering technique called ray-tracing. It\nreads in a text file containing information describing the objects and\nlighting in a scene and generates an image of that scene from the view\npoint of a camera also described in the text file. Ray-tracing is not a\nfast process by any means, but it produces very high quality images with\nrealistic reflections, shading, perspective and other effects.\n", "version": [ { "downloads": [ "https://github.com/POV-Ray/povray/archive/v3.7.0.10.tar.gz" ], "version": "3.7.0.10" } ] }, "powerapi": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "cxx", "gmake", "gnuconfig", "hwloc", "libtool", "m4", "mpi" ], "downloads": [ "https://github.com/pwrapi/pwrapi-ref.git" ], "homepages": [ "https://powerapi.sandia.gov/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "powerapi", "patches": [ "add_space.patch" ], "summary": "This software is a reference implementation of the PowerAPI\n", "version": [ { "repositories": [ { "commit": "93f66dfa29f014067823f2b790a1862e5841a11c", "type": "git", "url": "https://github.com/pwrapi/pwrapi-ref.git" } ], "version": "1.1.1" }, { "repositories": [ { "commit": "21f75b1469261d99e604f7ddc18f30513ebdd048", "type": "git", "url": "https://github.com/pwrapi/pwrapi-ref.git" } ], "version": "2020-01-30" } ] }, "powertop": { "alias": [], "categories": [], "dependencies": [ "gmake", "gnuconfig", "libnl", "ncurses" ], "downloads": [ "https://01.org/sites/default/files/downloads/powertop/powertop-v2.9.tar.gz" ], "homepages": [ "https://01.org/powertop/" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "powertop", "patches": [], "summary": "Powertop is a Linux tool to diagnose issues with power consumption and\npower management\n", "version": [ { "downloads": [ "https://01.org/sites/default/files/downloads/powertop/powertop-v2.9.tar.gz" ], "version": "2.9" } ] }, "ppl": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gmp" ], "downloads": [ "http://bugseng.com/products/ppl/download/ftp/releases/1.2/ppl-1.2.tar.gz", "http://bugseng.com/products/ppl/download/ftp/releases/1.1/ppl-1.1.tar.gz" ], "homepages": [ "https://bugseng.com/products/ppl/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "ppl", "patches": [], "summary": "The Parma Polyhedra Library (PPL) provides numerical abstractions\nespecially targeted at applications in the field of analysis and\nverification of complex systems. These abstractions include convex\npolyhedra, some special classes of polyhedra shapes that offer\ninteresting complexity/precision tradeoffs, and grids which represent\nregularly spaced points that satisfy a set of linear congruence\nrelations. The library also supports finite powersets and products of\npolyhedra and grids, a mixed integer linear programming problem solver\nusing an exact-arithmetic version of the simplex algorithm, a parametric\ninteger programming solver, and primitives for termination analysis via\nthe automatic synthesis of linear ranking functions.\n", "version": [ { "downloads": [ "http://bugseng.com/products/ppl/download/ftp/releases/1.1/ppl-1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ "http://bugseng.com/products/ppl/download/ftp/releases/1.2/ppl-1.2.tar.gz" ], "version": "1.2" } ] }, "pplacer": { "alias": [], "categories": [], "dependencies": [], "downloads": [ "https://github.com/matsen/pplacer/releases/download/v1.1.alpha19/pplacer-linux-v1.1.alpha19.zip" ], "homepages": [ "https://matsen.fhcrc.org/pplacer/" ], "licenses": [], "maintainers": [], "name": "pplacer", "patches": [], "summary": "Pplacer places query sequences on a fixed reference phylogenetic tree to\nmaximize phylogenetic likelihood or posterior probability according to a\nreference alignment. Pplacer is designed to be fast, to give useful\ninformation about uncertainty, and to offer advanced visualization and\ndownstream analysis.\n", "version": [ { "downloads": [ "https://github.com/matsen/pplacer/releases/download/v1.1.alpha19/pplacer-linux-v1.1.alpha19.zip" ], "version": "1.1.alpha19" } ] }, "ppopen-appl-amr-fdm": { "alias": [], "categories": [], "dependencies": [ "fortran", "gmake", "mpi" ], "downloads": [ "https://github.com/Post-Peta-Crest/ppOpenHPC.git" ], "homepages": [ "http://ppopenhpc.cc.u-tokyo.ac.jp/ppopenhpc/" ], "licenses": [], "maintainers": [], "name": "ppopen-appl-amr-fdm", "patches": [], "summary": " ppOpen-APPL/AMR-FDM is an adaptive mesh refinement (AMR) framework for\ndevelopment of 3D parallel finite-difference method (FDM) applications.\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/Post-Peta-Crest/ppOpenHPC.git" } ], "version": "master" } ] }, "ppopen-appl-bem": { "alias": [], "categories": [], "dependencies": [ "fortran", "gmake", "mpi" ], "downloads": [ "https://github.com/Post-Peta-Crest/ppOpenHPC.git" ], "homepages": [ "http://ppopenhpc.cc.u-tokyo.ac.jp/ppopenhpc/" ], "licenses": [], "maintainers": [], "name": "ppopen-appl-bem", "patches": [], "summary": "ppOpen-APPL/BEM is software used to support a boundary element analysis\nexecuted on a parallel computer. The current version includes a software\nframework for a parallel BEM analysis and an H-matrix library. If you\nwant to use the framework based on dense matrix computations, please\nmove to the directory 'src/framework' and 'src/framework_with_template'.\nIf you want to use the H-matrix library, please move to the directly\n'src/HACApK_with_BEM-BB-framework_1.0.0'.\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/Post-Peta-Crest/ppOpenHPC.git" } ], "version": "master" } ] }, "ppopen-appl-bem-at": { "alias": [], "categories": [], "dependencies": [ "fortran", "gmake", "mpi", "ppopen-appl-bem" ], "downloads": [ "https://github.com/Post-Peta-Crest/ppOpenHPC.git" ], "homepages": [ "http://ppopenhpc.cc.u-tokyo.ac.jp/ppopenhpc/" ], "licenses": [], "maintainers": [], "name": "ppopen-appl-bem-at", "patches": [ "duplicate_defs.patch when @master" ], "summary": " ppOpen-APPL/BEM-AT is ppOpen-APPL/Bem with auto tuning. If you want to\nuse ppOpen-APPL/BERM-AT, please copy files in\nsrc/framework_with_template from ppOpen-APPL/BEM install directory.\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/Post-Peta-Crest/ppOpenHPC.git" } ], "version": "master" } ] }, "ppopen-appl-dem-util": { "alias": [], "categories": [], "dependencies": [ "fortran", "gmake", "mpi" ], "downloads": [ "https://github.com/Post-Peta-Crest/ppOpenHPC.git" ], "homepages": [ "http://ppopenhpc.cc.u-tokyo.ac.jp/ppopenhpc/" ], "licenses": [], "maintainers": [], "name": "ppopen-appl-dem-util", "patches": [], "summary": " ppOpen-APPL/DEM provides fundamental components of the particle\nsimulations based on the discrete element method (DEM). ppOpen-APPL/DEM\n(ver.1.0.0) includes the libraries for the DEM, sample codes, and data\nsets. ppOpen-APPL/DEM-Util provides the preconditioning utilities. This\nutility prepares data sets of distributed data files from the mesh data\nsets.\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/Post-Peta-Crest/ppOpenHPC.git" } ], "version": "master" } ] }, "ppopen-appl-fdm": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "fortran", "gmake", "mpi", "ppopen-math-vis" ], "downloads": [ "https://github.com/Post-Peta-Crest/ppOpenHPC.git" ], "homepages": [ "http://ppopenhpc.cc.u-tokyo.ac.jp/ppopenhpc/" ], "licenses": [], "maintainers": [], "name": "ppopen-appl-fdm", "patches": [ "unused.patch", "gfortran_iargc.patch when %gcc", "iargc_definition.patch when %fj" ], "summary": " ppOpen-APPL/FDM is a application software for the FDM simulation of\nseismic wave propagation in elastic media in 2D and 3D. The 2D\napplication is prepared for a single-CPU (sequential) calculation and\nthe 3D application use MPI and OpenMP for parallel computing.\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/Post-Peta-Crest/ppOpenHPC.git" } ], "version": "master" } ] }, "ppopen-appl-fdm-at": { "alias": [], "categories": [], "dependencies": [ "fortran", "gmake", "mpi" ], "downloads": [ "https://github.com/Post-Peta-Crest/ppOpenHPC.git" ], "homepages": [ "http://ppopenhpc.cc.u-tokyo.ac.jp/ppopenhpc/" ], "licenses": [], "maintainers": [], "name": "ppopen-appl-fdm-at", "patches": [], "summary": "ppOpen-APPL/FDM with Auto-Tuning\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/Post-Peta-Crest/ppOpenHPC.git" } ], "version": "master" } ] }, "ppopen-appl-fem": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "metis", "mpi" ], "downloads": [ "https://github.com/Post-Peta-Crest/ppOpenHPC.git" ], "homepages": [ "http://ppopenhpc.cc.u-tokyo.ac.jp/ppopenhpc/" ], "licenses": [], "maintainers": [], "name": "ppopen-appl-fem", "patches": [ "gcc_struct_atomic.patch when %gcc" ], "summary": " ppOpen-APPL/FEM (ppohFEM) is a middleware to allow a Finite Element\nMethod (FEM) analysis code developer to devote himself to development of\nthe application software by offering a function commonly used in FEM.\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/Post-Peta-Crest/ppOpenHPC.git" } ], "version": "master" } ] }, "ppopen-appl-fvm": { "alias": [], "categories": [], "dependencies": [ "fortran", "gmake", "metis", "mpi" ], "downloads": [ "https://github.com/Post-Peta-Crest/ppOpenHPC.git" ], "homepages": [ "http://ppopenhpc.cc.u-tokyo.ac.jp/ppopenhpc/" ], "licenses": [], "maintainers": [], "name": "ppopen-appl-fvm", "patches": [], "summary": " ppOpen-APPL/FVM ia a coupling library that enables weak coupling on\nvarious simulation models, such as an atmospheric model and an ocean\nmodel, a seismic model and a structure model. For getting very wide\napplicability, ppohMATHMP is designed so as that it is independent from\ngrid structure. Instead of grid structure, ppOpen-APPL/FVM requires a\ndata set called 'mapping table'. Mapping table is composed of a\ncorrespondence table of grid indexes between a send model and a receive\nmodel and interpolation coefficients. A subroutine for making a mapping\ntable file is provided by ppohMATHMP API. Current version of ppohMATHMP\nis ver.1.0 which targets scalar data exchange. An exchange code of\nvector data which requires rotation calculation is under\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/Post-Peta-Crest/ppOpenHPC.git" } ], "version": "master" } ] }, "ppopen-at": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "fortran", "gmake" ], "downloads": [ "https://github.com/Post-Peta-Crest/ppOpenHPC.git" ], "homepages": [ "http://ppopenhpc.cc.u-tokyo.ac.jp/ppopenhpc/" ], "licenses": [ "MIT" ], "maintainers": [], "name": "ppopen-at", "patches": [], "summary": "ppOpen-AT is a part of the ppOpenHPC\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/Post-Peta-Crest/ppOpenHPC.git" } ], "version": "master" } ] }, "ppopen-math-mp": { "alias": [], "categories": [], "dependencies": [ "fortran", "gmake", "mpi" ], "downloads": [ "https://github.com/Post-Peta-Crest/ppOpenHPC.git" ], "homepages": [ "http://ppopenhpc.cc.u-tokyo.ac.jp/ppopenhpc/" ], "licenses": [], "maintainers": [], "name": "ppopen-math-mp", "patches": [], "summary": " ppOpen-Math/MP ia a coupling library that enables weak coupling on\nvarious simulation models, such as an atmospheric model and an ocean\nmodel, a seismic model and a structure model. For getting very wide\napplicability, ppOpen-Math/MP is designed so as that it is independent\nfrom grid structure. Instead of grid structure, PpohMATHMP requires a\ndata set called 'mapping table'. Mapping table is composed of a\ncorrespondence table of grid indexes between a send model and a receive\nmodel and interpolation coefficients. A subroutine for making a mapping\ntable file is provided by ppOpen-Math/MP API. Current version of ppOpen-\nMath/MP is ver.1.0 which targets scalar data exchange. An exchange code\nof vector data which requires rotation calculation is under development\nand will be released the next version.\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/Post-Peta-Crest/ppOpenHPC.git" } ], "version": "master" } ] }, "ppopen-math-vis": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "mpi" ], "downloads": [ "https://github.com/Post-Peta-Crest/ppOpenHPC.git" ], "homepages": [ "http://ppopenhpc.cc.u-tokyo.ac.jp/ppopenhpc/" ], "licenses": [], "maintainers": [], "name": "ppopen-math-vis", "patches": [], "summary": " ppOpen-MATH/VIS is a set of libraries for parallel visualization.\nCapabilities of ppOpen-MATH/VIS (ver.0.2.0) are as follows: Using\nbackground voxels with adaptive mesh refinement (AMR). Single UCD file.\nFlat MPI parallel programming models. (OpenMP/MPI hybrid will be\nsupported in the future). Can be called from programs written in both of\nFortran 90 and C. Only FDM-type structured meshes are supported.\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/Post-Peta-Crest/ppOpenHPC.git" } ], "version": "master" } ] }, "prank": { "alias": [], "categories": [], "dependencies": [ "bpp-suite", "c", "cxx", "exonerate", "gmake", "mafft" ], "downloads": [ "http://wasabiapp.org/download/prank/prank.source.170427.tgz" ], "homepages": [ "http://wasabiapp.org/software/prank/" ], "licenses": [], "maintainers": [], "name": "prank", "patches": [], "summary": "A powerful multiple sequence alignment browser.\n", "version": [ { "downloads": [ "http://wasabiapp.org/download/prank/prank.source.170427.tgz" ], "version": "170427" } ] }, "precice": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "boost", "c", "cmake", "cxx", "eigen", "fortran", "gmake", "libxml2", "mpi", "ninja", "petsc", "pkgconfig", "py-numpy", "python" ], "downloads": [ "https://github.com/precice/precice/archive/vdevelop.tar.gz", "https://github.com/precice/precice/archive/v3.3.0.tar.gz", "https://github.com/precice/precice/archive/v3.2.0.tar.gz", "https://github.com/precice/precice/archive/v3.1.2.tar.gz", "https://github.com/precice/precice/archive/v3.1.1.tar.gz", "https://github.com/precice/precice/archive/v3.1.0.tar.gz", "https://github.com/precice/precice/archive/v3.0.0.tar.gz", "https://github.com/precice/precice/archive/v2.5.1.tar.gz", "https://github.com/precice/precice/archive/v2.5.0.tar.gz", "https://github.com/precice/precice/archive/v2.4.0.tar.gz", "https://github.com/precice/precice/archive/v2.3.0.tar.gz", "https://github.com/precice/precice/archive/v2.2.1.tar.gz", "https://github.com/precice/precice/archive/v2.2.0.tar.gz", "https://github.com/precice/precice/archive/v2.1.1.tar.gz", "https://github.com/precice/precice/archive/v2.1.0.tar.gz", "https://github.com/precice/precice/archive/v2.0.2.tar.gz", "https://github.com/precice/precice/archive/v2.0.1.tar.gz", "https://github.com/precice/precice/archive/v2.0.0.tar.gz", "https://github.com/precice/precice/archive/v1.6.1.tar.gz", "https://github.com/precice/precice/archive/v1.6.0.tar.gz", "https://github.com/precice/precice/archive/v1.5.2.tar.gz", "https://github.com/precice/precice/archive/v1.5.1.tar.gz", "https://github.com/precice/precice/archive/v1.5.0.tar.gz", "https://github.com/precice/precice/archive/v1.4.1.tar.gz", "https://github.com/precice/precice/archive/v1.4.0.tar.gz", "https://github.com/precice/precice/archive/v1.3.0.tar.gz", "https://github.com/precice/precice/archive/v1.2.0.tar.gz", "https://github.com/precice/precice.git" ], "homepages": [ "https://precice.org/" ], "licenses": [ "LGPL-3.0-or-later" ], "maintainers": [ "MakisH", "fsimonis" ], "name": "precice", "patches": [ "edge-incomplete-type.patch when @2.0", "boost-system-header-only.patch when @2.3.0" ], "summary": "preCICE (Precise Code Interaction Coupling Environment) is a coupling\nlibrary for partitioned multi-physics simulations. Partitioned means\nthat preCICE couples existing programs (solvers) capable of simulating a\nsubpart of the complete physics involved in a simulation.\n", "version": [ { "downloads": [ "https://github.com/precice/precice/archive/v1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://github.com/precice/precice/archive/v1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://github.com/precice/precice/archive/v1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://github.com/precice/precice/archive/v1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://github.com/precice/precice/archive/v1.5.0.tar.gz" ], "version": "1.5.0" }, { "downloads": [ "https://github.com/precice/precice/archive/v1.5.1.tar.gz" ], "version": "1.5.1" }, { "downloads": [ "https://github.com/precice/precice/archive/v1.5.2.tar.gz" ], "version": "1.5.2" }, { "downloads": [ "https://github.com/precice/precice/archive/v1.6.0.tar.gz" ], "version": "1.6.0" }, { "downloads": [ "https://github.com/precice/precice/archive/v1.6.1.tar.gz" ], "version": "1.6.1" }, { "downloads": [ "https://github.com/precice/precice/archive/v2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://github.com/precice/precice/archive/v2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://github.com/precice/precice/archive/v2.0.2.tar.gz" ], "version": "2.0.2" }, { "downloads": [ "https://github.com/precice/precice/archive/v2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://github.com/precice/precice/archive/v2.1.1.tar.gz" ], "version": "2.1.1" }, { "downloads": [ "https://github.com/precice/precice/archive/v2.2.0.tar.gz" ], "version": "2.2.0" }, { "downloads": [ "https://github.com/precice/precice/archive/v2.2.1.tar.gz" ], "version": "2.2.1" }, { "downloads": [ "https://github.com/precice/precice/archive/v2.3.0.tar.gz" ], "version": "2.3.0" }, { "downloads": [ "https://github.com/precice/precice/archive/v2.4.0.tar.gz" ], "version": "2.4.0" }, { "downloads": [ "https://github.com/precice/precice/archive/v2.5.0.tar.gz" ], "version": "2.5.0" }, { "downloads": [ "https://github.com/precice/precice/archive/v2.5.1.tar.gz" ], "version": "2.5.1" }, { "downloads": [ "https://github.com/precice/precice/archive/v3.0.0.tar.gz" ], "version": "3.0.0" }, { "downloads": [ "https://github.com/precice/precice/archive/v3.1.0.tar.gz" ], "version": "3.1.0" }, { "downloads": [ "https://github.com/precice/precice/archive/v3.1.1.tar.gz" ], "version": "3.1.1" }, { "downloads": [ "https://github.com/precice/precice/archive/v3.1.2.tar.gz" ], "version": "3.1.2" }, { "downloads": [ "https://github.com/precice/precice/archive/v3.2.0.tar.gz" ], "version": "3.2.0" }, { "downloads": [ "https://github.com/precice/precice/archive/v3.3.0.tar.gz" ], "version": "3.3.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/precice/precice.git" } ], "version": "develop" } ] }, "predixy": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake" ], "downloads": [ "https://github.com/joyieldInc/predixy/archive/1.0.5.tar.gz", "https://github.com/joyieldInc/predixy/archive/1.0.4.tar.gz", "https://github.com/joyieldInc/predixy/archive/1.0.3.tar.gz" ], "homepages": [ "https://github.com/joyieldInc/predixy" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "predixy", "patches": [], "summary": "Predixy is a high performance and fully featured proxy for redis\nsentinel and redis cluster.\n", "version": [ { "downloads": [ "https://github.com/joyieldInc/predixy/archive/1.0.3.tar.gz" ], "version": "1.0.3" }, { "downloads": [ "https://github.com/joyieldInc/predixy/archive/1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://github.com/joyieldInc/predixy/archive/1.0.5.tar.gz" ], "version": "1.0.5" } ] }, "premake-core": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake" ], "downloads": [ "https://github.com/premake/premake-core/archive/v5.0.0-alpha15.tar.gz", "https://github.com/premake/premake-core/archive/v5.0.0-alpha14.tar.gz", "https://github.com/premake/premake-core/archive/v5.0.0-alpha13.tar.gz" ], "homepages": [ "https://premake.github.io/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "premake-core", "patches": [], "summary": "Premake is a command line utility which reads a scripted definition of a\nsoftware project, then uses it to perform build configuration tasks or\ngenerate project files for toolsets like Visual Studio, Xcode, and GNU\nMake. Premake's scripts are little Lua programs, so the sky's the limit!\n", "version": [ { "downloads": [ "https://github.com/premake/premake-core/archive/v5.0.0-alpha13.tar.gz" ], "version": "5.0.0-alpha13" }, { "downloads": [ "https://github.com/premake/premake-core/archive/v5.0.0-alpha14.tar.gz" ], "version": "5.0.0-alpha14" }, { "downloads": [ "https://github.com/premake/premake-core/archive/v5.0.0-alpha15.tar.gz" ], "version": "5.0.0-alpha15" } ] }, "presentproto": { "alias": [], "categories": [], "dependencies": [ "gmake", "gnuconfig", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/proto/presentproto-1.1.tar.gz", "https://www.x.org/archive/individual/proto/presentproto-1.0.tar.gz" ], "homepages": [ "https://cgit.freedesktop.org/xorg/proto/presentproto/" ], "licenses": [], "maintainers": [], "name": "presentproto", "patches": [], "summary": "Present protocol specification and Xlib/Xserver headers.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/proto/presentproto-1.0.tar.gz" ], "version": "1.0" }, { "downloads": [ "https://www.x.org/archive/individual/proto/presentproto-1.1.tar.gz" ], "version": "1.1" } ] }, "preseq": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gsl", "samtools" ], "downloads": [ "https://github.com/smithlabcode/preseq/releases/download/v2.0.3/preseq_v2.0.3.tar.bz2", "https://github.com/smithlabcode/preseq/releases/download/v2.0.2/preseq_v2.0.2.tar.bz2" ], "homepages": [ "https://github.com/smithlabcode/preseq" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "preseq", "patches": [], "summary": "The preseq package is aimed at predicting and estimating the complexity\nof a genomic sequencing library, equivalent to predicting and estimating\nthe number of redundant reads from a given sequencing depth and how many\nwill be expected from additional sequencing using an initial sequencing\nexperiment.\n", "version": [ { "downloads": [ "https://github.com/smithlabcode/preseq/releases/download/v2.0.2/preseq_v2.0.2.tar.bz2" ], "version": "2.0.2" }, { "downloads": [ "https://github.com/smithlabcode/preseq/releases/download/v2.0.3/preseq_v2.0.3.tar.bz2" ], "version": "2.0.3" } ] }, "pressio-log": { "alias": [], "categories": [], "dependencies": [], "downloads": [ "https://github.com/pressio/pressio-log.git" ], "homepages": [ "https://github.com/Pressio/pressio-log/blob/main/README.md" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "cwschilly", "fnrizzi" ], "name": "pressio-log", "patches": [], "summary": " pressio-log is a header-only logging library designed for use with\nPressio repositories.\n", "version": [ { "repositories": [ { "branch": "0.15.0", "type": "git", "url": "https://github.com/pressio/pressio-log.git" } ], "version": "0.15.0" }, { "repositories": [ { "branch": "0.16.0", "type": "git", "url": "https://github.com/pressio/pressio-log.git" } ], "version": "0.16.0" }, { "repositories": [ { "branch": "0.17.0", "type": "git", "url": "https://github.com/pressio/pressio-log.git" } ], "version": "0.17.0" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/pressio/pressio-log.git" } ], "version": "main" } ] }, "pressio-ops": { "alias": [], "categories": [], "dependencies": [], "downloads": [ "https://github.com/pressio/pressio-ops.git" ], "homepages": [ "https://pressio.github.io/pressio-ops" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "cwschilly", "fnrizzi" ], "name": "pressio-ops", "patches": [], "summary": " pressio-ops is a header-only library containing essential operations\nfor the Pressio ecosystem.\n", "version": [ { "repositories": [ { "branch": "0.15.0", "type": "git", "url": "https://github.com/pressio/pressio-ops.git" } ], "version": "0.15.0" }, { "repositories": [ { "branch": "0.16.0", "type": "git", "url": "https://github.com/pressio/pressio-ops.git" } ], "version": "0.16.0" }, { "repositories": [ { "branch": "0.17.0", "type": "git", "url": "https://github.com/pressio/pressio-ops.git" } ], "version": "0.17.0" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/pressio/pressio-ops.git" } ], "version": "main" } ] }, "pressio-rom": { "alias": [], "categories": [], "dependencies": [ "pressio-log", "pressio-ops" ], "downloads": [ "https://github.com/pressio/pressio-rom.git" ], "homepages": [ "https://pressio.github.io/pressio-rom/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "cwschilly", "fnrizzi" ], "name": "pressio-rom", "patches": [], "summary": " Pressio is an ecosystem for developing, applying and using projection-\nbased model reduction (pROM) methods. A key goal is to mitigate the\nintrusive nature of pROMs for large-scale codes, and providing a\nframework to foster research of new ideas as well as incentivize broader\nadoption and usability.\n", "version": [ { "repositories": [ { "branch": "0.15.0", "type": "git", "url": "https://github.com/pressio/pressio-rom.git" } ], "version": "0.15.0" }, { "repositories": [ { "branch": "0.16.0", "type": "git", "url": "https://github.com/pressio/pressio-rom.git" } ], "version": "0.16.0" }, { "repositories": [ { "branch": "0.17.0", "type": "git", "url": "https://github.com/pressio/pressio-rom.git" } ], "version": "0.17.0" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/pressio/pressio-rom.git" } ], "version": "main" } ] }, "presto": { "alias": [], "categories": [], "dependencies": [ "java", "maven" ], "downloads": [ "https://github.com/prestodb/presto/archive/0.239.tar.gz", "https://github.com/prestodb/presto/archive/0.238.2.tar.gz", "https://github.com/prestodb/presto/archive/0.238.1.tar.gz", "https://github.com/prestodb/presto/archive/0.238.tar.gz", "https://github.com/prestodb/presto/archive/0.237.2.tar.gz", "https://github.com/prestodb/presto/archive/0.237.1.tar.gz", "https://github.com/prestodb/presto/archive/0.237.tar.gz", "https://github.com/prestodb/presto/archive/0.236.1.tar.gz", "https://github.com/prestodb/presto/archive/0.236.tar.gz", "https://github.com/prestodb/presto/archive/0.235.1.tar.gz" ], "homepages": [ "https://prestodb.io/" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "presto", "patches": [], "summary": "Presto is a distributed SQL query engine for big data.\n", "version": [ { "downloads": [ "https://github.com/prestodb/presto/archive/0.235.1.tar.gz" ], "version": "0.235.1" }, { "downloads": [ "https://github.com/prestodb/presto/archive/0.236.tar.gz" ], "version": "0.236" }, { "downloads": [ "https://github.com/prestodb/presto/archive/0.236.1.tar.gz" ], "version": "0.236.1" }, { "downloads": [ "https://github.com/prestodb/presto/archive/0.237.tar.gz" ], "version": "0.237" }, { "downloads": [ "https://github.com/prestodb/presto/archive/0.237.1.tar.gz" ], "version": "0.237.1" }, { "downloads": [ "https://github.com/prestodb/presto/archive/0.237.2.tar.gz" ], "version": "0.237.2" }, { "downloads": [ "https://github.com/prestodb/presto/archive/0.238.tar.gz" ], "version": "0.238" }, { "downloads": [ "https://github.com/prestodb/presto/archive/0.238.1.tar.gz" ], "version": "0.238.1" }, { "downloads": [ "https://github.com/prestodb/presto/archive/0.238.2.tar.gz" ], "version": "0.238.2" }, { "downloads": [ "https://github.com/prestodb/presto/archive/0.239.tar.gz" ], "version": "0.239" } ] }, "prettier": { "alias": [], "categories": [], "dependencies": [ "node-js", "npm" ], "downloads": [ "https://github.com/prettier/prettier/archive/refs/tags/3.2.5.tar.gz" ], "homepages": [ "https://prettier.io/" ], "licenses": [ "MIT" ], "maintainers": [ "adamjstewart" ], "name": "prettier", "patches": [], "summary": "Prettier is an opinionated code formatter.\n", "version": [ { "downloads": [ "https://github.com/prettier/prettier/archive/refs/tags/3.2.5.tar.gz" ], "version": "3.2.5" } ] }, "price": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake" ], "downloads": [ "https://derisilab.ucsf.edu/software/price/PriceSource140408.tar.gz" ], "homepages": [ "http://derisilab.ucsf.edu/software/price/" ], "licenses": [], "maintainers": [], "name": "price", "patches": [], "summary": "PRICE (Paired-Read Iterative Contig Extension): a de novo genome\nassembler implemented in C++.\n", "version": [ { "downloads": [ "https://derisilab.ucsf.edu/software/price/PriceSource140408.tar.gz" ], "version": "140408" } ] }, "prime95": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "libtool" ], "downloads": [ "https://www.mersenne.org/ftp_root/gimps/p95v309b3.linux64.tar.gz", "https://www.mersenne.org/ftp_root/gimps/p95v309b2.linux64.tar.gz", "https://www.mersenne.org/ftp_root/gimps/p95v309b1.linux64.tar.gz", "https://www.mersenne.org/ftp_root/gimps/p95v308b17.linux64.tar.gz", "https://www.mersenne.org/ftp_root/gimps/p95v308b16.linux64.tar.gz" ], "homepages": [ "https://www.mersenne.org/" ], "licenses": [ "Unlicense" ], "maintainers": [ "saqibkh" ], "name": "prime95", "patches": [], "summary": " Prime95, also distributed as the command-line utility mprime for\nFreeBSD and Linux, is a freeware application. Prime95 is a CPU stress\ntesting program. It tests your computer for stability issues by\nstressing your CPU to its maximum limit. Prime95 runs indefinitely and\nonly terminates a stress test when it encounters an error and informs\nthe user that the system may be unstable.\n", "version": [ { "downloads": [ "https://www.mersenne.org/ftp_root/gimps/p95v308b16.linux64.tar.gz" ], "version": "95v308b16" }, { "downloads": [ "https://www.mersenne.org/ftp_root/gimps/p95v308b17.linux64.tar.gz" ], "version": "95v308b17" }, { "downloads": [ "https://www.mersenne.org/ftp_root/gimps/p95v309b1.linux64.tar.gz" ], "version": "95v309b1" }, { "downloads": [ "https://www.mersenne.org/ftp_root/gimps/p95v309b2.linux64.tar.gz" ], "version": "95v309b2" }, { "downloads": [ "https://www.mersenne.org/ftp_root/gimps/p95v309b3.linux64.tar.gz" ], "version": "95v309b3" } ] }, "primer3": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "fortran", "gmake" ], "downloads": [ "https://github.com/primer3-org/primer3/archive/v2.6.1.tar.gz", "https://github.com/primer3-org/primer3/archive/v2.5.0.tar.gz", "https://github.com/primer3-org/primer3/archive/v2.3.7.tar.gz" ], "homepages": [ "https://primer3.org/" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "primer3", "patches": [], "summary": "Primer3 is a widely used program for designing PCR primers (PCR =\n\"Polymerase Chain Reaction\"). PCR is an essential and ubiquitous tool in\ngenetics and molecular biology. Primer3 can also design hybridization\nprobes and sequencing primers.\n", "version": [ { "downloads": [ "https://github.com/primer3-org/primer3/archive/v2.3.7.tar.gz" ], "version": "2.3.7" }, { "downloads": [ "https://github.com/primer3-org/primer3/archive/v2.5.0.tar.gz" ], "version": "2.5.0" }, { "downloads": [ "https://github.com/primer3-org/primer3/archive/v2.6.1.tar.gz" ], "version": "2.6.1" } ] }, "prinseq-lite": { "alias": [], "categories": [], "dependencies": [ "perl", "perl-cairo", "perl-digest-md5", "perl-json" ], "downloads": [ "https://sourceforge.net/projects/prinseq/files/standalone/prinseq-lite-0.20.4.tar.gz" ], "homepages": [ "https://prinseq.sourceforge.net" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "prinseq-lite", "patches": [], "summary": "PRINSEQ will help you to preprocess your genomic or metagenomic sequence\ndata in FASTA or FASTQ format.\n", "version": [ { "downloads": [ "https://sourceforge.net/projects/prinseq/files/standalone/prinseq-lite-0.20.4.tar.gz" ], "version": "0.20.4" } ] }, "printproto": { "alias": [], "categories": [], "dependencies": [ "gmake", "gnuconfig", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/proto/printproto-1.0.5.tar.gz" ], "homepages": [ "https://cgit.freedesktop.org/xorg/proto/printproto" ], "licenses": [], "maintainers": [], "name": "printproto", "patches": [], "summary": "Xprint extension to the X11 protocol - a portable, network-transparent\nprinting system.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/proto/printproto-1.0.5.tar.gz" ], "version": "1.0.5" } ] }, "prism": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "java" ], "downloads": [ "https://github.com/prismmodelchecker/prism/archive/v4.7.tar.gz", "https://github.com/prismmodelchecker/prism/archive/v4.5.tar.gz" ], "homepages": [ "https://www.prismmodelchecker.org/" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [ "snehring" ], "name": "prism", "patches": [ "Makefile.patch when target=aarch64:" ], "summary": "PRISM is a probabilistic model checker, a tool for formal modelling and\nanalysis of systems that exhibit random or probabilistic behaviour.\n", "version": [ { "downloads": [ "https://github.com/prismmodelchecker/prism/archive/v4.5.tar.gz" ], "version": "4.5" }, { "downloads": [ "https://github.com/prismmodelchecker/prism/archive/v4.7.tar.gz" ], "version": "4.7" } ] }, "prmon": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja", "nlohmann-json", "py-matplotlib", "py-numpy", "py-pandas", "spdlog" ], "downloads": [ "https://github.com/HSF/prmon/archive/refs/tags/vmain.zip", "https://github.com/HSF/prmon/archive/refs/tags/v3.1.1.zip", "https://github.com/HSF/prmon/archive/refs/tags/v3.1.0.zip", "https://github.com/HSF/prmon/archive/refs/tags/v3.0.2.zip", "https://github.com/HSF/prmon/archive/refs/tags/v3.0.0.zip", "https://github.com/HSF/prmon/archive/refs/tags/v2.2.1.zip", "https://github.com/HSF/prmon/archive/refs/tags/v2.2.0.zip", "https://github.com/HSF/prmon/archive/refs/tags/v2.1.1.zip", "https://github.com/HSF/prmon/archive/refs/tags/v1.1.1.zip", "https://github.com/HSF/prmon.git" ], "homepages": [ "https://github.com/HSF/prmon/" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "amete", "graeme-a-stewart", "vvolkl" ], "name": "prmon", "patches": [], "summary": "Standalone monitor for process resource consumption.\n", "version": [ { "downloads": [ "https://github.com/HSF/prmon/archive/refs/tags/v1.1.1.zip" ], "version": "1.1.1" }, { "downloads": [ "https://github.com/HSF/prmon/archive/refs/tags/v2.1.1.zip" ], "version": "2.1.1" }, { "downloads": [ "https://github.com/HSF/prmon/archive/refs/tags/v2.2.0.zip" ], "version": "2.2.0" }, { "downloads": [ "https://github.com/HSF/prmon/archive/refs/tags/v2.2.1.zip" ], "version": "2.2.1" }, { "downloads": [ "https://github.com/HSF/prmon/archive/refs/tags/v3.0.0.zip" ], "version": "3.0.0" }, { "downloads": [ "https://github.com/HSF/prmon/archive/refs/tags/v3.0.2.zip" ], "version": "3.0.2" }, { "downloads": [ "https://github.com/HSF/prmon/archive/refs/tags/v3.1.0.zip" ], "version": "3.1.0" }, { "downloads": [ "https://github.com/HSF/prmon/archive/refs/tags/v3.1.1.zip" ], "version": "3.1.1" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/HSF/prmon.git" } ], "version": "main" } ] }, "prng": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "https://statmath.wu.ac.at/prng/prng-3.0.2.tar.gz" ], "homepages": [ "https://statmath.wu.ac.at/prng/" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "prng", "patches": [ "prng-3.0.2-shared.patch when @3.0.2", "prng-3.0.2-fix-c99-inline-semantics.patch when @3.0.2" ], "summary": "Pseudo-Random Number Generator library.\n", "version": [ { "downloads": [ "https://statmath.wu.ac.at/prng/prng-3.0.2.tar.gz" ], "version": "3.0.2" } ] }, "probconsrna": { "alias": [], "categories": [], "dependencies": [ "cxx" ], "downloads": [ "http://probcons.stanford.edu/probconsRNA.tar.gz" ], "homepages": [ "http://probcons.stanford.edu/" ], "licenses": [], "maintainers": [], "name": "probconsrna", "patches": [], "summary": "Experimental version of PROBCONS with parameters estimated via\nunsupervised training on BRAliBASE\n", "version": [ { "downloads": [ "http://probcons.stanford.edu/probconsRNA.tar.gz" ], "version": "2005-6-7" } ] }, "procenv": { "alias": [], "categories": [], "dependencies": [ "c", "check", "expat", "gmake", "gnuconfig", "libpcap", "numactl" ], "downloads": [ "https://github.com/jamesodhunt/procenv/archive/0.60.tar.gz", "https://github.com/jamesodhunt/procenv/archive/0.51.tar.gz" ], "homepages": [ "https://github.com/jamesodhunt/procenv/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "procenv", "patches": [ "7cafed1316ddb16fe0689d54ba10c05dd2edd347.patch when @:0.51" ], "summary": "A command-line tool that displays as much detail about itself and its\nenvironment as possible. It can be used as a test tool, to understand\nthe type of environment a process runs in, and for comparing system\nenvironments.\n", "version": [ { "downloads": [ "https://github.com/jamesodhunt/procenv/archive/0.51.tar.gz" ], "version": "0.51" }, { "downloads": [ "https://github.com/jamesodhunt/procenv/archive/0.60.tar.gz" ], "version": "0.60" } ] }, "process-in-process": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "libxml2", "ncurses", "pigz", "systemtap", "texinfo" ], "downloads": [ "https://github.com/procinproc/PiP.git" ], "homepages": [ "https://github.com/procinproc/procinproc.github.io" ], "licenses": [ "BSD-2-Clause-FreeBSD" ], "maintainers": [ "ahori" ], "name": "process-in-process", "patches": [], "summary": "Process-in-Process\n", "version": [ { "repositories": [ { "branch": "pip-2", "type": "git", "url": "https://github.com/procinproc/PiP.git" } ], "version": "2" } ] }, "procps": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "dejagnu", "gettext", "gmake", "gnuconfig", "iconv", "libtool", "m4", "ncurses", "pkgconfig" ], "downloads": [ "https://gitlab.com/procps-ng/procps/-/archive/vmaster/procps-vmaster.tar.gz", "https://gitlab.com/procps-ng/procps/-/archive/v4.0.4/procps-v4.0.4.tar.gz", "https://gitlab.com/procps-ng/procps/-/archive/v4.0.3/procps-v4.0.3.tar.gz", "https://gitlab.com/procps-ng/procps/-/archive/v4.0.2/procps-v4.0.2.tar.gz", "https://gitlab.com/procps-ng/procps/-/archive/v4.0.1/procps-v4.0.1.tar.gz", "https://gitlab.com/procps-ng/procps/-/archive/v4.0.0/procps-v4.0.0.tar.gz", "https://gitlab.com/procps-ng/procps/-/archive/v3.3.17/procps-v3.3.17.tar.gz", "https://gitlab.com/procps-ng/procps/-/archive/v3.3.16/procps-v3.3.16.tar.gz", "https://gitlab.com/procps-ng/procps/-/archive/v3.3.15/procps-v3.3.15.tar.gz", "https://gitlab.com/procps-ng/procps/-/archive/v3.3.14/procps-v3.3.14.tar.gz", "https://gitlab.com/procps-ng/procps.git" ], "homepages": [ "https://gitlab.com/procps-ng/procps" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "procps", "patches": [ "libintl-3.3.14.patch when @3.3.14:3.3", "libintl-4.0.0.patch when @=4.0.0", "libintl-4.0.1.patch when @4.0.1:4.0.3" ], "summary": "Command line and full screen utilities for browsing procfs, a \"pseudo\"\nfile system dynamically generated by the kernel to provide information\nabout the status of entries in its process table.\n", "version": [ { "downloads": [ "https://gitlab.com/procps-ng/procps/-/archive/v3.3.14/procps-v3.3.14.tar.gz" ], "version": "3.3.14" }, { "downloads": [ "https://gitlab.com/procps-ng/procps/-/archive/v3.3.15/procps-v3.3.15.tar.gz" ], "version": "3.3.15" }, { "downloads": [ "https://gitlab.com/procps-ng/procps/-/archive/v3.3.16/procps-v3.3.16.tar.gz" ], "version": "3.3.16" }, { "downloads": [ "https://gitlab.com/procps-ng/procps/-/archive/v3.3.17/procps-v3.3.17.tar.gz" ], "version": "3.3.17" }, { "downloads": [ "https://gitlab.com/procps-ng/procps/-/archive/v4.0.0/procps-v4.0.0.tar.gz" ], "version": "4.0.0" }, { "downloads": [ "https://gitlab.com/procps-ng/procps/-/archive/v4.0.1/procps-v4.0.1.tar.gz" ], "version": "4.0.1" }, { "downloads": [ "https://gitlab.com/procps-ng/procps/-/archive/v4.0.2/procps-v4.0.2.tar.gz" ], "version": "4.0.2" }, { "downloads": [ "https://gitlab.com/procps-ng/procps/-/archive/v4.0.3/procps-v4.0.3.tar.gz" ], "version": "4.0.3" }, { "downloads": [ "https://gitlab.com/procps-ng/procps/-/archive/v4.0.4/procps-v4.0.4.tar.gz" ], "version": "4.0.4" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://gitlab.com/procps-ng/procps.git" } ], "version": "master" } ] }, "procps-ng": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://udomain.dl.sourceforge.net/project/procps-ng/Production/procps-ng-3.3.16.tar.xz" ], "homepages": [ "https://sourceforge.net/projects/procps-ng/" ], "licenses": [ "GPL-2.0-or-later AND LGPL-2.1-or-later" ], "maintainers": [], "name": "procps-ng", "patches": [], "summary": "Utilities that provide system information.\n", "version": [ { "downloads": [ "https://udomain.dl.sourceforge.net/project/procps-ng/Production/procps-ng-3.3.16.tar.xz" ], "version": "3.3.16" } ] }, "prod-util": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "fortran", "gmake", "ninja", "w3emc" ], "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-prod_util/archive/refs/tags/vdevelop.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-prod_util/archive/refs/tags/v2.1.2.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-prod_util/archive/refs/tags/v2.1.1.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-prod_util/archive/refs/tags/v2.1.0.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-prod_util" ], "homepages": [ "https://github.com/NOAA-EMC/NCEPLIBS-prod_util" ], "licenses": [], "maintainers": [ "AlexanderRichert-NOAA", "Hang-Lei-NOAA", "edwardhartnett" ], "name": "prod-util", "patches": [], "summary": " Product utilities for the NCEP models. This is part of NOAA's NCEPLIBS\nproject.\n", "version": [ { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-prod_util/archive/refs/tags/v2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-prod_util/archive/refs/tags/v2.1.1.tar.gz" ], "version": "2.1.1" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-prod_util/archive/refs/tags/v2.1.2.tar.gz" ], "version": "2.1.2" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/NOAA-EMC/NCEPLIBS-prod_util" } ], "version": "develop" } ] }, "prodigal": { "alias": [], "categories": [], "dependencies": [ "c", "gmake" ], "downloads": [ "https://github.com/hyattpd/Prodigal/archive/v2.6.3.tar.gz" ], "homepages": [ "https://github.com/hyattpd/Prodigal" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "prodigal", "patches": [], "summary": "Fast, reliable protein-coding gene prediction for prokaryotic genomes.\n", "version": [ { "downloads": [ "https://github.com/hyattpd/Prodigal/archive/v2.6.3.tar.gz" ], "version": "2.6.3" } ] }, "professor": { "alias": [], "categories": [], "dependencies": [ "cxx", "eigen", "gmake", "py-cython", "py-iminuit", "py-matplotlib", "python", "python-venv", "root", "yoda" ], "downloads": [ "https://professor.hepforge.org/downloads/?f=Professor-2.3.3.tar.gz" ], "homepages": [ "https://professor.hepforge.org/" ], "licenses": [], "maintainers": [ "mjk655" ], "name": "professor", "patches": [], "summary": "Professor Monte-Carlo tuning package\n", "version": [ { "downloads": [ "https://professor.hepforge.org/downloads/?f=Professor-2.3.3.tar.gz" ], "version": "2.3.3" } ] }, "profugusmc": { "alias": [], "categories": [], "dependencies": [ "blas", "c", "cmake", "cuda", "cxx", "gmake", "lapack", "mpi", "ninja" ], "downloads": [ "https://code.ornl.gov/ProfugusMC/ProfugusMC/-/archive/master/ProfugusMC-master.tar.gz", "https://code.ornl.gov/ProfugusMC/ProfugusMC.git" ], "homepages": [ "https://code.ornl.gov/ProfugusMC/ProfugusMC" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "profugusmc", "patches": [], "summary": "ProfugusMC is a Monte Carlo radiation transport mini-app. It is designed\nto be a minimal, self-contained version of the Profugus application.\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://code.ornl.gov/ProfugusMC/ProfugusMC.git" } ], "version": "master" } ] }, "proj": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "curl", "cxx", "gmake", "gnuconfig", "googletest", "libtiff", "ninja", "pkgconfig", "sqlite" ], "downloads": [ "https://download.osgeo.org/proj/proj-9.7.0.tar.gz", "https://download.osgeo.org/proj/proj-9.4.1.tar.gz", "https://download.osgeo.org/proj/proj-9.4.0.tar.gz", "https://download.osgeo.org/proj/proj-9.3.1.tar.gz", "https://download.osgeo.org/proj/proj-9.3.0.tar.gz", "https://download.osgeo.org/proj/proj-9.2.1.tar.gz", 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The package\nABAEnrichment is designed to test for enrichment of user defined\ncandidate genes in the set of expressed genes in different human brain\nregions. The core function 'aba_enrich' integrates the expression of the\ncandidate gene set (averaged across donors) and the structural\ninformation of the brain using an ontology, both provided by the Allen\nBrain Atlas project. 'aba_enrich' interfaces the ontology enrichment\nsoftware FUNC to perform the statistical analyses. Additional functions\nprovided in this package like 'get_expression' and 'plot_expression'\nfacilitate exploring the expression data, and besides the standard\ncandidate vs. background gene set enrichment, also three additional\ntests are implemented, e.g. for cases when genes are ranked instead of\ndivided into candidate and background.\n", "version": [ { "repositories": [ { "commit": "15f33ccb694a91d2d2067c937682c4bc952def6c", "type": "git", "url": "https://git.bioconductor.org/packages/ABAEnrichment" } ], "version": "1.10.0" }, { "repositories": [ { "commit": "1320e932deafd71d67c7a6f758d15b00d6d7f7d7", "type": "git", "url": "https://git.bioconductor.org/packages/ABAEnrichment" } ], "version": "1.12.0" }, { "repositories": [ { "commit": "e1ebfb5de816b924af16675a5ba9ed1a6b527b23", "type": "git", "url": "https://git.bioconductor.org/packages/ABAEnrichment" } ], "version": "1.14.1" }, { "repositories": [ { "commit": "608433a0b07e6dd99915dc536a038d960f1be1d5", "type": "git", "url": "https://git.bioconductor.org/packages/ABAEnrichment" } ], "version": "1.20.0" }, { "repositories": [ { "commit": "5d20752263ae8f18ea5f5a6cfbdd5921a0f236d7", "type": "git", "url": "https://git.bioconductor.org/packages/ABAEnrichment" } ], "version": "1.24.0" }, { "repositories": [ { "commit": "33df9e162aec07e2aae92cc058cbfb33720ba4b4", "type": "git", "url": "https://git.bioconductor.org/packages/ABAEnrichment" } ], "version": "1.26.0" }, { "repositories": [ { "commit": "d2a0467dcb7aa6e103e3b83dccd6510b0e142ac1", "type": "git", "url": "https://git.bioconductor.org/packages/ABAEnrichment" } ], "version": "1.6.0" }, { "repositories": [ { "commit": "cb8155ee9a04fb55b2a2e8c23df7c0be15bb2624", "type": "git", "url": "https://git.bioconductor.org/packages/ABAEnrichment" } ], "version": "1.8.0" } ] }, "r-abind": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/abind_1.4-8.tar.gz", "https://cloud.r-project.org/src/contrib/abind_1.4-5.tar.gz", "https://cloud.r-project.org/src/contrib/abind_1.4-3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=abind" ], "licenses": [ "LGPL-2.0-or-later" ], "maintainers": [], "name": "r-abind", "patches": [], "summary": " Combine Multidimensional Arrays. Combine multidimensional arrays into a\nsingle array. This is a generalization of 'cbind' and 'rbind'. Works\nwith vectors, matrices, and higher-dimensional arrays. Also provides\nfunctions 'adrop', 'asub', and 'afill' for manipulating, extracting and\nreplacing data in arrays.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/abind_1.4-3.tar.gz" ], "version": "1.4-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/abind_1.4-5.tar.gz" ], "version": "1.4-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/abind_1.4-8.tar.gz" ], "version": "1.4-8" } ] }, "r-absseq": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-limma", "r-locfit" ], "downloads": [ "https://git.bioconductor.org/packages/ABSSeq" ], "homepages": [ "https://bioconductor.org/packages/ABSSeq" ], "licenses": [], "maintainers": [], "name": "r-absseq", "patches": [], "summary": "ABSSeq: a new RNA-Seq analysis method based on modelling absolute\nexpression differences. Inferring differential expression genes by\nabsolute counts difference between two groups, utilizing Negative\nbinomial distribution and moderating fold-change according to\nheterogeneity of dispersion across expression level.\n", "version": [ { "repositories": [ { "commit": "a67ba49bc156a4522092519644f3ec83d58ebd6a", "type": "git", "url": "https://git.bioconductor.org/packages/ABSSeq" } ], "version": "1.22.8" }, { "repositories": [ { "commit": "189d81c3d70f957bf50780f76a6ddcee499b4784", "type": "git", "url": "https://git.bioconductor.org/packages/ABSSeq" } ], "version": "1.32.3" }, { "repositories": [ { "commit": "0c3a2514ef644c6e0de3714bc91959a302c9e006", "type": "git", "url": "https://git.bioconductor.org/packages/ABSSeq" } ], "version": "1.34.1" }, { "repositories": [ { "commit": "bd419072432cba4ef58b4b37b3c69c85d78b1c4a", "type": "git", "url": "https://git.bioconductor.org/packages/ABSSeq" } ], "version": "1.36.0" }, { "repositories": [ { "commit": "b686d92f0f0efdb835982efe761d059bc24b34ce", "type": "git", "url": "https://git.bioconductor.org/packages/ABSSeq" } ], "version": "1.38.0" }, { "repositories": [ { "commit": "c202b4a059021ed1228ccee7303c69b0aa4ca1ee", "type": "git", "url": "https://git.bioconductor.org/packages/ABSSeq" } ], "version": "1.44.0" }, { "repositories": [ { "commit": "b237c967d44d075ca306c35e92df8b66a60ce72d", "type": "git", "url": "https://git.bioconductor.org/packages/ABSSeq" } ], "version": "1.48.0" }, { "repositories": [ { "commit": "4f384d04ebaae6ea0b56e5cff9a9dcdcb6c8afb0", "type": "git", "url": "https://git.bioconductor.org/packages/ABSSeq" } ], "version": "1.50.0" }, { "repositories": [ { "commit": "07038c047775e17d5d29909927d2143efb63e9cb", "type": "git", "url": "https://git.bioconductor.org/packages/ABSSeq" } ], "version": "1.52.0" }, { "repositories": [ { "commit": "5e7de8c2a6532073012660f22243c9f7a5568ef6", "type": "git", "url": "https://git.bioconductor.org/packages/ABSSeq" } ], "version": "1.54.0" } ] }, "r-acde": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-boot" ], "downloads": [ "https://git.bioconductor.org/packages/acde" ], "homepages": [ "https://bioconductor.org/packages/acde" ], "licenses": [], "maintainers": [], "name": "r-acde", "patches": [], "summary": "Artificial Components Detection of Differentially Expressed Genes. This\npackage provides a multivariate inferential analysis method for\ndetecting differentially expressed genes in gene expression data. It\nuses artificial components, close to the data's principal components but\nwith an exact interpretation in terms of differential genetic\nexpression, to identify differentially expressed genes while controlling\nthe false discovery rate (FDR). The methods on this package are\ndescribed in the vignette or in the article 'Multivariate Method for\nInferential Identification of Differentially Expressed Genes in Gene\nExpression Experiments' by J. P. Acosta, L. Lopez-Kleine and S. Restrepo\n(2015, pending publication).\n", "version": [ { "repositories": [ { "commit": "2c303dec45f3c70bf333a6eacae568a08d5ca010", "type": "git", "url": "https://git.bioconductor.org/packages/acde" } ], "version": "1.10.0" }, { "repositories": [ { "commit": "f6ce5926ac915c2d73436f47daf7f9791645dad4", "type": "git", "url": "https://git.bioconductor.org/packages/acde" } ], "version": "1.12.0" }, { "repositories": [ { "commit": "6017c7436a46f186b2a3cea9d2b93274f6dd3417", "type": "git", "url": "https://git.bioconductor.org/packages/acde" } ], "version": "1.14.0" }, { "repositories": [ { "commit": "cefb4f2e2b0ef3c5f51944c0ece7a71294020350", "type": "git", "url": "https://git.bioconductor.org/packages/acde" } ], "version": "1.20.0" }, { "repositories": [ { "commit": "0c3c4d47af7eaff37420032ea5245743a65124cf", "type": "git", "url": "https://git.bioconductor.org/packages/acde" } ], "version": "1.24.0" }, { "repositories": [ { "commit": "dfef9a435062e948efd5eda22942a0d500baa992", "type": "git", "url": "https://git.bioconductor.org/packages/acde" } ], "version": "1.26.0" }, { "repositories": [ { "commit": "0edccca7be2475fa2ae3b3c36d0d64924c37b3c0", "type": "git", "url": "https://git.bioconductor.org/packages/acde" } ], "version": "1.28.0" }, { "repositories": [ { "commit": "4c16b9fd6c91a433bf1345252e022571c4983cb5", "type": "git", "url": "https://git.bioconductor.org/packages/acde" } ], "version": "1.30.0" }, { "repositories": [ { "commit": "244c81f435a077bf7895ea565fa6695e8b079f67", "type": "git", "url": "https://git.bioconductor.org/packages/acde" } ], "version": "1.6.0" }, { "repositories": [ { "commit": "f7fc3e1dce958445f920d3b28b56abde70bfb9de", "type": "git", "url": "https://git.bioconductor.org/packages/acde" } ], "version": "1.8.0" } ] }, "r-acepack": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/acepack_1.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/acepack_1.4.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=acepack" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-acepack", "patches": [], "summary": "ACE and AVAS for Selecting Multiple Regression Transformations. Two\nnonparametric methods for multiple regression transform selection are\nprovided. The first, Alternative Conditional Expectations (ACE), is an\nalgorithm to find the fixed point of maximal correlation, i.e. it finds\na set of transformed response variables that maximizes R^2 using\nsmoothing functions [see Breiman, L., and J.H. Friedman. 1985.\n\"Estimating Optimal Transformations for Multiple Regression and\nCorrelation\". Journal of the American Statistical Association.\n80:580-598. ]. Also included is the\nAdditivity Variance Stabilization (AVAS) method which works better than\nACE when correlation is low [see Tibshirani, R.. 1986. \"Estimating\nTransformations for Regression via Additivity and Variance\nStabilization\". Journal of the American Statistical Association.\n83:394-405. ]. A good introduction\nto these two methods is in chapter 16 of Frank Harrel's \"Regression\nModeling Strategies\" in the Springer Series in Statistics.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/acepack_1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/acepack_1.4.2.tar.gz" ], "version": "1.4.2" } ] }, "r-acgh": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-biobase", "r-cluster", "r-multtest", "r-survival" ], "downloads": [ "https://git.bioconductor.org/packages/aCGH" ], "homepages": [ "https://bioconductor.org/packages/aCGH" ], "licenses": [], "maintainers": [], "name": "r-acgh", "patches": [], "summary": "Classes and functions for Array Comparative Genomic Hybridization data.\nFunctions for reading aCGH data from image analysis output files and\nclone information files, creation of aCGH S3 objects for storing these\ndata. Basic methods for accessing/replacing, subsetting, printing and\nplotting aCGH objects.\n", "version": [ { "repositories": [ { "commit": "be2ed339449f55c8d218e10c435e4ad356683693", "type": "git", "url": "https://git.bioconductor.org/packages/aCGH" } ], "version": "1.54.0" }, { "repositories": [ { "commit": "f3531ec99fc181044bdcb6a01c9976029efb6235", "type": "git", "url": "https://git.bioconductor.org/packages/aCGH" } ], "version": "1.56.0" }, { "repositories": [ { "commit": "2decc79a21bff5a14d708cdc654e351515b20d3e", "type": "git", "url": "https://git.bioconductor.org/packages/aCGH" } ], "version": "1.58.0" }, { "repositories": [ { "commit": "ae581758aaa1755448f0cfef5adfb30d1e820b21", "type": "git", "url": "https://git.bioconductor.org/packages/aCGH" } ], "version": "1.60.0" }, { "repositories": [ { "commit": "3b68b69c3380fa3b66dfb060457628a4a9c22d4f", "type": "git", "url": "https://git.bioconductor.org/packages/aCGH" } ], "version": "1.62.0" }, { "repositories": [ { "commit": "91f41a3917ddce43eb05e11c90eb99c467ba2247", "type": "git", "url": "https://git.bioconductor.org/packages/aCGH" } ], "version": "1.68.0" }, { "repositories": [ { "commit": "b5d4022ac487125194d3913f1b8c2948db6e2792", "type": "git", "url": "https://git.bioconductor.org/packages/aCGH" } ], "version": "1.72.0" }, { "repositories": [ { "commit": "e7ba380af0da138788eb6c86f5dbe453269c0810", "type": "git", "url": "https://git.bioconductor.org/packages/aCGH" } ], "version": "1.74.0" }, { "repositories": [ { "commit": "c6068522854ed0b1c3feb006619ef25590f70ad6", "type": "git", "url": "https://git.bioconductor.org/packages/aCGH" } ], "version": "1.76.0" }, { "repositories": [ { "commit": "75df3a4839af66ce177d1bbc3cec4ac03c21dc8e", "type": "git", "url": "https://git.bioconductor.org/packages/aCGH" } ], "version": "1.78.0" } ] }, "r-acme": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-biobase", "r-biocgenerics" ], "downloads": [ "https://git.bioconductor.org/packages/ACME" ], "homepages": [ "https://bioconductor.org/packages/ACME" ], "licenses": [], "maintainers": [], "name": "r-acme", "patches": [], "summary": "Algorithms for Calculating Microarray Enrichment (ACME). ACME\n(Algorithms for Calculating Microarray Enrichment) is a set of tools for\nanalysing tiling array ChIP/chip, DNAse hypersensitivity, or other\nexperiments that result in regions of the genome showing \"enrichment\".\nIt does not rely on a specific array technology (although the array\nshould be a \"tiling\" array), is very general (can be applied in\nexperiments resulting in regions of enrichment), and is very insensitive\nto array noise or normalization methods. It is also very fast and can be\napplied on whole-genome tiling array experiments quite easily with\nenough memory.\n", "version": [ { "repositories": [ { "commit": "76372255d7714a0c8128a11c028bf70214dac407", "type": "git", "url": "https://git.bioconductor.org/packages/ACME" } ], "version": "2.32.0" }, { "repositories": [ { "commit": "1f53d43e420e245423fdf2711d0dcb345f829469", "type": "git", "url": "https://git.bioconductor.org/packages/ACME" } ], "version": "2.34.0" }, { "repositories": [ { "commit": "39e056435b9775d35e7f7fc5446c2c3cafe15670", "type": "git", "url": "https://git.bioconductor.org/packages/ACME" } ], "version": "2.36.0" }, { "repositories": [ { "commit": "cd03196428e8adf62e84f25c4d4545429e2c908b", "type": "git", "url": "https://git.bioconductor.org/packages/ACME" } ], "version": "2.38.0" }, { "repositories": [ { "commit": "38499e512998d54d874a0bfdc173f4ba5de5f01a", "type": "git", "url": "https://git.bioconductor.org/packages/ACME" } ], "version": "2.40.0" }, { "repositories": [ { "commit": "68f45c9f7d34c28adf6a0fc4245fdf63881109de", "type": "git", "url": "https://git.bioconductor.org/packages/ACME" } ], "version": "2.46.0" }, { "repositories": [ { "commit": "d55a19a8c091e8ea5fd35041520107a7f7603e14", "type": "git", "url": "https://git.bioconductor.org/packages/ACME" } ], "version": "2.50.0" }, { "repositories": [ { "commit": "14a97c722d0201654af9e583e7e462b458c28a77", "type": "git", "url": "https://git.bioconductor.org/packages/ACME" } ], "version": "2.52.0" }, { "repositories": [ { "commit": "8d39d9d6623adf427f5eba308790e1de01213870", "type": "git", "url": "https://git.bioconductor.org/packages/ACME" } ], "version": "2.54.0" }, { "repositories": [ { "commit": "083af1249e67db11fd471babe67b146eb9c1700c", "type": "git", "url": "https://git.bioconductor.org/packages/ACME" } ], "version": "2.56.0" } ] }, "r-ada": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-rpart" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ada_2.0-5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ada" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-ada", "patches": [], "summary": "The R Package Ada for Stochastic Boosting. Performs discrete, real, and\ngentle boost under both exponential and logistic loss on a given data\nset. The package ada provides a straightforward, well-documented, and\nbroad boosting routine for classification, ideally suited for small to\nmoderate-sized data sets.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ada_2.0-5.tar.gz" ], "version": "2.0-5" } ] }, "r-adabag": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-caret", "r-consrank", "r-doparallel", "r-dplyr", "r-foreach", "r-mlbench", "r-rpart", "r-tidyr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/adabag_5.0.tar.gz", "https://cloud.r-project.org/src/contrib/adabag_4.2.tar.gz", "https://cloud.r-project.org/src/contrib/adabag_4.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=adabag" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-adabag", "patches": [], "summary": "Applies Multiclass AdaBoost.M1, SAMME and Bagging. It implements Freund\nand Schapire's Adaboost.M1 algorithm and Breiman's Bagging algorithm\nusing classification trees as individual classifiers. Once these\nclassifiers have been trained, they can be used to predict on new data.\nAlso, cross validation estimation of the error can be done. Since\nversion 2.0 the function margins() is available to calculate the margins\nfor these classifiers. Also a higher flexibility is achieved giving\naccess to the rpart.control() argument of 'rpart'. Four important new\nfeatures were introduced on version 3.0, AdaBoost-SAMME (Zhu et al.,\n2009) is implemented and a new function errorevol() shows the error of\nthe ensembles as a function of the number of iterations. In addition,\nthe ensembles can be pruned using the option 'newmfinal' in the\npredict.bagging() and predict.boosting() functions and the posterior\nprobability of each class for observations can be obtained. Version 3.1\nmodifies the relative importance measure to take into account the gain\nof the Gini index given by a variable in each tree and the weights of\nthese trees. Version 4.0 includes the margin-based ordered aggregation\nfor Bagging pruning (Guo and Boukir, 2013) and a function to auto prune\nthe 'rpart' tree. Moreover, three new plots are also available\nimportanceplot(), plot.errorevol() and plot.margins(). Version 4.1\nallows to predict on unlabeled data. Version 4.2 includes the parallel\ncomputation option for some of the functions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/adabag_4.1.tar.gz" ], "version": "4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/adabag_4.2.tar.gz" ], "version": "4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/adabag_5.0.tar.gz" ], "version": "5.0" } ] }, "r-ade4": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-mass", "r-pixmap", "r-progress", "r-rcpp", "r-rcpparmadillo", "r-sp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ade4_1.7-22.tar.gz", "https://cloud.r-project.org/src/contrib/ade4_1.7-20.tar.gz", "https://cloud.r-project.org/src/contrib/ade4_1.7-19.tar.gz", "https://cloud.r-project.org/src/contrib/ade4_1.7-18.tar.gz", "https://cloud.r-project.org/src/contrib/ade4_1.7-16.tar.gz", "https://cloud.r-project.org/src/contrib/ade4_1.7-13.tar.gz", "https://cloud.r-project.org/src/contrib/ade4_1.7-11.tar.gz", "https://cloud.r-project.org/src/contrib/ade4_1.7-6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ade4" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-ade4", "patches": [], "summary": "Analysis of Ecological Data : Exploratory and Euclidean Methods in\nEnvironmental Sciences. Tools for multivariate data analysis. Several\nmethods are provided for the analysis (i.e., ordination) of one-table\n(e.g., principal component analysis, correspondence analysis), two-table\n(e.g., coinertia analysis, redundancy analysis), three-table (e.g., RLQ\nanalysis) and K-table (e.g., STATIS, multiple coinertia analysis). The\nphilosophy of the package is described in Dray and Dufour (2007)\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ade4_1.7-11.tar.gz" ], "version": "1.7-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ade4_1.7-13.tar.gz" ], "version": "1.7-13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ade4_1.7-16.tar.gz" ], "version": "1.7-16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ade4_1.7-18.tar.gz" ], "version": "1.7-18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ade4_1.7-19.tar.gz" ], "version": "1.7-19" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ade4_1.7-20.tar.gz" ], "version": "1.7-20" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ade4_1.7-22.tar.gz" ], "version": "1.7-22" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ade4_1.7-6.tar.gz" ], "version": "1.7-6" } ] }, "r-adegenet": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-ade4", "r-ape", "r-boot", "r-dplyr", "r-ggplot2", "r-igraph", "r-mass", "r-reshape2", "r-seqinr", "r-shiny", "r-spdep", "r-vegan" ], "downloads": [ "https://cloud.r-project.org/src/contrib/adegenet_2.1.10.tar.gz", "https://cloud.r-project.org/src/contrib/adegenet_2.1.8.tar.gz", "https://cloud.r-project.org/src/contrib/adegenet_2.1.6.tar.gz", "https://cloud.r-project.org/src/contrib/adegenet_2.1.5.tar.gz", "https://cloud.r-project.org/src/contrib/adegenet_2.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/adegenet_2.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/adegenet_2.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/adegenet_2.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=adegenet" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-adegenet", "patches": [], "summary": "Exploratory Analysis of Genetic and Genomic Data. Toolset for the\nexploration of genetic and genomic data. Adegenet provides formal (S4)\nclasses for storing and handling various genetic data, including genetic\nmarkers with varying ploidy and hierarchical population structure\n('genind' class), alleles counts by populations ('genpop'), and genome-\nwide SNP data ('genlight'). It also implements original multivariate\nmethods (DAPC, sPCA), graphics, statistical tests, simulation tools,\ndistance and similarity measures, and several spatial methods. A range\nof both empirical and simulated datasets is also provided to illustrate\nvarious methods.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/adegenet_2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/adegenet_2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/adegenet_2.1.1.tar.gz" ], "version": "2.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/adegenet_2.1.10.tar.gz" ], "version": "2.1.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/adegenet_2.1.3.tar.gz" ], "version": "2.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/adegenet_2.1.5.tar.gz" ], "version": "2.1.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/adegenet_2.1.6.tar.gz" ], "version": "2.1.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/adegenet_2.1.8.tar.gz" ], "version": "2.1.8" } ] }, "r-adegraphics": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ade4", "r-kernsmooth", "r-lattice", "r-latticeextra", "r-rcolorbrewer", "r-sp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/adegraphics_1.0-21.tar.gz", "https://cloud.r-project.org/src/contrib/adegraphics_1.0-18.tar.gz", "https://cloud.r-project.org/src/contrib/adegraphics_1.0-16.tar.gz", "https://cloud.r-project.org/src/contrib/adegraphics_1.0-15.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=adegraphics" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-adegraphics", "patches": [], "summary": "An S4 Lattice-Based Package for the Representation of Multivariate Data.\nGraphical functionalities for the representation of multivariate data.\nIt is a complete re-implementation of the functions available in the\n'ade4' package.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/adegraphics_1.0-15.tar.gz" ], "version": "1.0-15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/adegraphics_1.0-16.tar.gz" ], "version": "1.0-16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/adegraphics_1.0-18.tar.gz" ], "version": "1.0-18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/adegraphics_1.0-21.tar.gz" ], "version": "1.0-21" } ] }, "r-adephylo": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-ade4", "r-adegenet", "r-ape", "r-phylobase" ], "downloads": [ "https://cloud.r-project.org/src/contrib/adephylo_1.1-16.tar.gz", "https://cloud.r-project.org/src/contrib/adephylo_1.1-13.tar.gz", "https://cloud.r-project.org/src/contrib/adephylo_1.1-11.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=adephylo" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-adephylo", "patches": [], "summary": "Exploratory Analyses for the Phylogenetic Comparative Method.\nMultivariate tools to analyze comparative data, i.e. a phylogeny and\nsome traits measured for each taxa.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/adephylo_1.1-11.tar.gz" ], "version": "1.1-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/adephylo_1.1-13.tar.gz" ], "version": "1.1-13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/adephylo_1.1-16.tar.gz" ], "version": "1.1-16" } ] }, "r-adespatial": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-ade4", "r-adegraphics", "r-adephylo", "r-lattice", "r-mass", "r-shiny", "r-sp", "r-spdep", "r-vegan" ], "downloads": [ "https://cloud.r-project.org/src/contrib/adespatial_0.3-23.tar.gz", "https://cloud.r-project.org/src/contrib/adespatial_0.3-21.tar.gz", "https://cloud.r-project.org/src/contrib/adespatial_0.3-20.tar.gz", "https://cloud.r-project.org/src/contrib/adespatial_0.3-19.tar.gz", "https://cloud.r-project.org/src/contrib/adespatial_0.3-16.tar.gz", "https://cloud.r-project.org/src/contrib/adespatial_0.3-14.tar.gz", "https://cloud.r-project.org/src/contrib/adespatial_0.3-8.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=adespatial" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-adespatial", "patches": [], "summary": "Multivariate Multiscale Spatial Analysis. Tools for the multiscale\nspatial analysis of multivariate data. Several methods are based on the\nuse of a spatial weighting matrix and its eigenvector decomposition\n(Moran's Eigenvectors Maps, MEM). Several approaches are described in\nthe review Dray et al (2012) .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/adespatial_0.3-14.tar.gz" ], "version": "0.3-14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/adespatial_0.3-16.tar.gz" ], "version": "0.3-16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/adespatial_0.3-19.tar.gz" ], "version": "0.3-19" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/adespatial_0.3-20.tar.gz" ], "version": "0.3-20" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/adespatial_0.3-21.tar.gz" ], "version": "0.3-21" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/adespatial_0.3-23.tar.gz" ], "version": "0.3-23" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/adespatial_0.3-8.tar.gz" ], "version": "0.3-8" } ] }, "r-adgoftest": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ADGofTest_0.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ADGofTest" ], "licenses": [], "maintainers": [], "name": "r-adgoftest", "patches": [], "summary": "Anderson-Darling GoF test. Anderson-Darling GoF test with p-value\ncalculation based on Marsaglia's 2004 paper 'Evaluating the Anderson-\nDarling Distribution'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ADGofTest_0.3.tar.gz" ], "version": "0.3" } ] }, "r-adsplit": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-annotationdbi", "r-biobase", "r-cluster", "r-go-db", "r-keggrest", "r-multtest" ], "downloads": [ "https://git.bioconductor.org/packages/adSplit" ], "homepages": [ "https://bioconductor.org/packages/adSplit" ], "licenses": [], "maintainers": [], "name": "r-adsplit", "patches": [], "summary": "Annotation-Driven Clustering. This package implements clustering of\nmicroarray gene expression profiles according to functional annotations.\nFor each term genes are annotated to, splits into two subclasses are\ncomputed and a significance of the supporting gene set is determined.\n", "version": [ { "repositories": [ { "commit": "32f150eb51c66b867301dceeb527de5b97f9f490", "type": "git", "url": "https://git.bioconductor.org/packages/adSplit" } ], "version": "1.64.0" }, { "repositories": [ { "commit": "64580a6f7a9bc6b16334267c90df48fbb839cc16", "type": "git", "url": "https://git.bioconductor.org/packages/adSplit" } ], "version": "1.66.0" }, { "repositories": [ { "commit": "705977b5e1cb7dd69793cc673fa215baaba42af5", "type": "git", "url": "https://git.bioconductor.org/packages/adSplit" } ], "version": "1.68.0" }, { "repositories": [ { "commit": "a08a994215a459b856eae051c778e2b9144f52d9", "type": "git", "url": "https://git.bioconductor.org/packages/adSplit" } ], "version": "1.70.0" } ] }, "r-aer": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-car", "r-formula", "r-lmtest", "r-sandwich", "r-survival", "r-zoo" ], "downloads": [ "https://cloud.r-project.org/src/contrib/AER_1.2-12.tar.gz", "https://cloud.r-project.org/src/contrib/AER_1.2-10.tar.gz", "https://cloud.r-project.org/src/contrib/AER_1.2-9.tar.gz", "https://cloud.r-project.org/src/contrib/AER_1.2-7.tar.gz", "https://cloud.r-project.org/src/contrib/AER_1.2-6.tar.gz", "https://cloud.r-project.org/src/contrib/AER_1.2-5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=AER" ], "licenses": [], "maintainers": [], "name": "r-aer", "patches": [], "summary": "Applied Econometrics with R. Functions, data sets, examples, demos, and\nvignettes for the book Christian Kleiber and Achim Zeileis (2008),\nApplied Econometrics with R, Springer-Verlag, New York. ISBN\n978-0-387-77316-2.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/AER_1.2-10.tar.gz" ], "version": "1.2-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/AER_1.2-12.tar.gz" ], "version": "1.2-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/AER_1.2-5.tar.gz" ], "version": "1.2-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/AER_1.2-6.tar.gz" ], "version": "1.2-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/AER_1.2-7.tar.gz" ], "version": "1.2-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/AER_1.2-9.tar.gz" ], "version": "1.2-9" } ] }, "r-afex": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-car", "r-lme4", "r-lmertest", "r-pbkrtest", "r-reformulas", "r-reshape2", "r-rlang" ], "downloads": [ "https://cloud.r-project.org/src/contrib/afex_1.5-0.tar.gz", "https://cloud.r-project.org/src/contrib/afex_1.3-1.tar.gz", "https://cloud.r-project.org/src/contrib/afex_1.3-0.tar.gz", "https://cloud.r-project.org/src/contrib/afex_1.2-1.tar.gz", "https://cloud.r-project.org/src/contrib/afex_1.2-0.tar.gz", "https://cloud.r-project.org/src/contrib/afex_1.1-1.tar.gz", "https://cloud.r-project.org/src/contrib/afex_1.0-1.tar.gz", "https://cloud.r-project.org/src/contrib/afex_0.28-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=afex" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-afex", "patches": [], "summary": "Analysis of Factorial Experiments. Convenience functions for analyzing\nfactorial experiments using ANOVA or mixed models. aov_ez(), aov_car(),\nand aov_4() allow specification of between, within (i.e., repeated-\nmeasures), or mixed (i.e., split-plot) ANOVAs for data in long format\n(i.e., one observation per row), automatically aggregating multiple\nobservations per individual and cell of the design. mixed() fits mixed\nmodels using lme4::lmer() and computes p-values for all fixed effects\nusing either Kenward-Roger or Satterthwaite approximation for degrees of\nfreedom (LMM only), parametric bootstrap (LMMs and GLMMs), or likelihood\nratio tests (LMMs and GLMMs). afex_plot() provides a high-level\ninterface for interaction or one-way plots using ggplot2, combining raw\ndata and model estimates. afex uses type 3 sums of squares as default\n(imitating commercial statistical software).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/afex_0.28-1.tar.gz" ], "version": "0.28-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/afex_1.0-1.tar.gz" ], "version": "1.0-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/afex_1.1-1.tar.gz" ], "version": "1.1-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/afex_1.2-0.tar.gz" ], "version": "1.2-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/afex_1.2-1.tar.gz" ], "version": "1.2-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/afex_1.3-0.tar.gz" ], "version": "1.3-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/afex_1.3-1.tar.gz" ], "version": "1.3-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/afex_1.5-0.tar.gz" ], "version": "1.5-0" } ] }, "r-affxparser": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r" ], "downloads": [ "https://git.bioconductor.org/packages/affxparser" ], "homepages": [ "https://bioconductor.org/packages/affxparser" ], "licenses": [], "maintainers": [], "name": "r-affxparser", "patches": [], "summary": "Affymetrix File Parsing SDK. Package for parsing Affymetrix files (CDF,\nCEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient\nparsing of Affymetrix files using the Affymetrix' Fusion SDK. Both\nASCII- and binary-based files are supported. Currently, there are\nmethods for reading chip definition file (CDF) and a cell intensity file\n(CEL). These files can be read either in full or in part. 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These\nmethods can be used standalone, be utilized in other packages, or be\nwrapped up in higher-level classes.\n", "version": [ { "repositories": [ { "commit": "fc16179fc4bee8954c5415d7cd13e3112b75b4fd", "type": "git", "url": "https://git.bioconductor.org/packages/aroma.light" } ], "version": "3.16.0" }, { "repositories": [ { "commit": "02cde7fa166259bce73c396a87dca2ecc8249c39", "type": "git", "url": "https://git.bioconductor.org/packages/aroma.light" } ], "version": "3.20.0" }, { "repositories": [ { "commit": "3ff48b8f546acc9803b3c652363cac78d3b81ae5", "type": "git", "url": "https://git.bioconductor.org/packages/aroma.light" } ], "version": "3.24.0" }, { "repositories": [ { "commit": "7ead7517a77bc8b4b4b42aace69957a17e8fe016", "type": "git", "url": "https://git.bioconductor.org/packages/aroma.light" } ], "version": "3.26.0" }, { "repositories": [ { "commit": "7749dd7033e9885ec2546a5cac0562bac2fea04d", "type": "git", "url": "https://git.bioconductor.org/packages/aroma.light" } ], "version": "3.28.0" }, { "repositories": [ { "commit": "a1882c2126622cb389a7ef1ef5b5c565e603a282", "type": "git", "url": "https://git.bioconductor.org/packages/aroma.light" } ], "version": "3.30.0" } ] }, "r-arrangements": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gmp", "r", "r-gmp", "r-r6" ], "downloads": [ "https://cloud.r-project.org/src/contrib/arrangements_1.1.9.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=arrangements" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-arrangements", "patches": [], "summary": "Fast Generators and Iterators for Permutations, Combinations, Integer\nPartitions and Compositions. Fast generators and iterators for\npermutations, combinations, integer partitions and compositions. The\narrangements are in lexicographical order and generated iteratively in a\nmemory efficient manner. It has been demonstrated that 'arrangements'\noutperforms most existing packages of similar kind. Benchmarks could be\nfound at\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/arrangements_1.1.9.tar.gz" ], "version": "1.1.9" } ] }, "r-ash": { "alias": [], "categories": [], "dependencies": [ "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ash_1.0-15.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ash" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-ash", "patches": [], "summary": "David Scott's ASH Routines. David Scott's ASH routines ported from\nS-PLUS to R.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ash_1.0-15.tar.gz" ], "version": "1.0-15" } ] }, "r-askpass": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-sys" ], "downloads": [ "https://cloud.r-project.org/src/contrib/askpass_1.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/askpass_1.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/askpass_1.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=askpass" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-askpass", "patches": [], "summary": "Safe Password Entry for R, Git, and SSH. Cross-platform utilities for\nprompting the user for credentials or a passphrase, for example to\nauthenticate with a server or read a protected key. Includes native\nprograms for MacOS and Windows, hence no 'tcltk' is required. Password\nentry can be invoked in two different ways: directly from R via the\naskpass() function, or indirectly as password-entry back-end for 'ssh-\nagent' or 'git-credential' via the SSH_ASKPASS and GIT_ASKPASS\nenvironment variables. Thereby the user can be prompted for credentials\nor a passphrase if needed when R calls out to git or ssh.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/askpass_1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/askpass_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/askpass_1.2.1.tar.gz" ], "version": "1.2.1" } ] }, "r-asreml": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-data-table", "r-ggplot2", "r-jsonlite" ], "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io//asreml_4.2.0.302_R43_x86_64-pc-linux-gnu.tar.gz", null ], "homepages": [ "https://vsni.co.uk/software/asreml-r" ], "licenses": [ "UNKNOWN" ], "maintainers": [ "snehring" ], "name": "r-asreml", "patches": [], "summary": "ASReml-R is a statistical package that fits linear mixed models using\nResidual Maximum Likelihood (REML) in the R environment.\n", "version": [ { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io//asreml_4.2.0.302_R43_x86_64-pc-linux-gnu.tar.gz" ], "version": "4.2.0.302_R43" } ] }, "r-assertive": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-assertive-base", "r-assertive-code", "r-assertive-data", "r-assertive-data-uk", "r-assertive-data-us", "r-assertive-datetimes", "r-assertive-files", "r-assertive-matrices", "r-assertive-models", "r-assertive-numbers", "r-assertive-properties", "r-assertive-reflection", "r-assertive-sets", "r-assertive-strings", "r-assertive-types", "r-knitr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/assertive_0.3-6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=assertive" ], "licenses": [], "maintainers": [], "name": "r-assertive", "patches": [], "summary": "Readable Check Functions to Ensure Code Integrity. Lots of predicates\n(is_* functions) to check the state of your variables, and assertions\n(assert_* functions) to throw errors if they aren't in the right form.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/assertive_0.3-6.tar.gz" ], "version": "0.3-6" } ] }, "r-assertive-base": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.base_0.0-9.tar.gz", "https://cloud.r-project.org/src/contrib/assertive.base_0.0-7.tar.gz", "https://cloud.r-project.org/src/contrib/assertive.base_0.0-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=assertive.base" ], "licenses": [], "maintainers": [], "name": "r-assertive-base", "patches": [], "summary": "A Lightweight Core of the 'assertive' Package. A minimal set of\npredicates and assertions used by the assertive package. This is mainly\nfor use by other package developers who want to include run-time testing\nfeatures in their own packages. End-users will usually want to use\nassertive directly.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.base_0.0-1.tar.gz" ], "version": "0.0-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.base_0.0-7.tar.gz" ], "version": "0.0-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.base_0.0-9.tar.gz" ], "version": "0.0-9" } ] }, "r-assertive-code": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-assertive-base", "r-assertive-properties", "r-assertive-types" ], "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.code_0.0-4.tar.gz", "https://cloud.r-project.org/src/contrib/assertive.code_0.0-3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=assertive.code" ], "licenses": [], "maintainers": [], "name": "r-assertive-code", "patches": [], "summary": "Assertions to Check Properties of Code. A set of predicates and\nassertions for checking the properties of code. This is mainly for use\nby other package developers who want to include run-time testing\nfeatures in their own packages. End-users will usually want to use\nassertive directly.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.code_0.0-3.tar.gz" ], "version": "0.0-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.code_0.0-4.tar.gz" ], "version": "0.0-4" } ] }, "r-assertive-data": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-assertive-base", "r-assertive-strings" ], "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.data_0.0-3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=assertive.data" ], "licenses": [], "maintainers": [], "name": "r-assertive-data", "patches": [], "summary": "Assertions to Check Properties of Data. A set of predicates and\nassertions for checking the properties of (country independent) complex\ndata types. This is mainly for use by other package developers who want\nto include run-time testing features in their own packages. End-users\nwill usually want to use assertive directly.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.data_0.0-3.tar.gz" ], "version": "0.0-3" } ] }, "r-assertive-data-uk": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-assertive-base", "r-assertive-strings" ], "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.data.uk_0.0-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=assertive.data.uk" ], "licenses": [], "maintainers": [], "name": "r-assertive-data-uk", "patches": [], "summary": "Assertions to Check Properties of Strings. A set of predicates and\nassertions for checking the properties of UK-specific complex data\ntypes. This is mainly for use by other package developers who want to\ninclude run-time testing features in their own packages. End-users will\nusually want to use assertive directly.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.data.uk_0.0-2.tar.gz" ], "version": "0.0-2" } ] }, "r-assertive-data-us": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-assertive-base", "r-assertive-strings" ], "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.data.us_0.0-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=assertive.data.us" ], "licenses": [], "maintainers": [], "name": "r-assertive-data-us", "patches": [], "summary": "Assertions to Check Properties of Strings. A set of predicates and\nassertions for checking the properties of US-specific complex data\ntypes. This is mainly for use by other package developers who want to\ninclude run-time testing features in their own packages. End-users will\nusually want to use assertive directly.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.data.us_0.0-2.tar.gz" ], "version": "0.0-2" } ] }, "r-assertive-datetimes": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-assertive-base", "r-assertive-types" ], "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.datetimes_0.0-3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=assertive.datetimes" ], "licenses": [], "maintainers": [], "name": "r-assertive-datetimes", "patches": [], "summary": "Assertions to Check Properties of Dates and Times. A set of predicates\nand assertions for checking the properties of dates and times. This is\nmainly for use by other package developers who want to include run-time\ntesting features in their own packages. End-users will usually want to\nuse assertive directly.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.datetimes_0.0-3.tar.gz" ], "version": "0.0-3" } ] }, "r-assertive-files": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-assertive-base", "r-assertive-numbers" ], "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.files_0.0-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=assertive.files" ], "licenses": [], "maintainers": [], "name": "r-assertive-files", "patches": [], "summary": "Assertions to Check Properties of Files. A set of predicates and\nassertions for checking the properties of files and connections. This is\nmainly for use by other package developers who want to include run-time\ntesting features in their own packages. End-users will usually want to\nuse assertive directly.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.files_0.0-2.tar.gz" ], "version": "0.0-2" } ] }, "r-assertive-matrices": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-assertive-base" ], "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.matrices_0.0-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=assertive.matrices" ], "licenses": [], "maintainers": [], "name": "r-assertive-matrices", "patches": [], "summary": "Assertions to Check Properties of Matrices. A set of predicates and\nassertions for checking the properties of matrices. This is mainly for\nuse by other package developers who want to include run-time testing\nfeatures in their own packages. End-users will usually want to use\nassertive directly.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.matrices_0.0-2.tar.gz" ], "version": "0.0-2" } ] }, "r-assertive-models": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-assertive-base" ], "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.models_0.0-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=assertive.models" ], "licenses": [], "maintainers": [], "name": "r-assertive-models", "patches": [], "summary": "Assertions to Check Properties of Models. A set of predicates and\nassertions for checking the properties of models. This is mainly for use\nby other package developers who want to include run-time testing\nfeatures in their own packages. End-users will usually want to use\nassertive directly.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.models_0.0-2.tar.gz" ], "version": "0.0-2" } ] }, "r-assertive-numbers": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-assertive-base" ], "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.numbers_0.0-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=assertive.numbers" ], "licenses": [], "maintainers": [], "name": "r-assertive-numbers", "patches": [], "summary": "Assertions to Check Properties of Numbers. A set of predicates and\nassertions for checking the properties of numbers. This is mainly for\nuse by other package developers who want to include run-time testing\nfeatures in their own packages. End-users will usually want to use\nassertive directly.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.numbers_0.0-2.tar.gz" ], "version": "0.0-2" } ] }, "r-assertive-properties": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-assertive-base" ], "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.properties_0.0-5.tar.gz", "https://cloud.r-project.org/src/contrib/assertive.properties_0.0-4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=assertive.properties" ], "licenses": [], "maintainers": [], "name": "r-assertive-properties", "patches": [], "summary": "Assertions to Check Properties of Variables. A set of predicates and\nassertions for checking the properties of variables, such as length,\nnames and attributes. This is mainly for use by other package developers\nwho want to include run-time testing features in their own packages.\nEnd-users will usually want to use assertive directly.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.properties_0.0-4.tar.gz" ], "version": "0.0-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.properties_0.0-5.tar.gz" ], "version": "0.0-5" } ] }, "r-assertive-reflection": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-assertive-base" ], "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.reflection_0.0-5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=assertive.reflection" ], "licenses": [], "maintainers": [], "name": "r-assertive-reflection", "patches": [], "summary": "Assertions for Checking the State of R. A set of predicates and\nassertions for checking the state and capabilities of R, the operating\nsystem it is running on, and the IDE being used. This is mainly for use\nby other package developers who want to include run-time testing\nfeatures in their own packages. End-users will usually want to use\nassertive directly.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.reflection_0.0-5.tar.gz" ], "version": "0.0-5" } ] }, "r-assertive-sets": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-assertive-base" ], "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.sets_0.0-3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=assertive.sets" ], "licenses": [], "maintainers": [], "name": "r-assertive-sets", "patches": [], "summary": "Assertions to Check Properties of Sets. A set of predicates and\nassertions for checking the properties of sets. This is mainly for use\nby other package developers who want to include run-time testing\nfeatures in their own packages. End-users will usually want to use\nassertive directly.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.sets_0.0-3.tar.gz" ], "version": "0.0-3" } ] }, "r-assertive-strings": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-assertive-base", "r-assertive-types", "r-stringi" ], "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.strings_0.0-3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=assertive.strings" ], "licenses": [], "maintainers": [], "name": "r-assertive-strings", "patches": [], "summary": "Assertions to Check Properties of Strings. A set of predicates and\nassertions for checking the properties of strings. This is mainly for\nuse by other package developers who want to include run-time testing\nfeatures in their own packages. End-users will usually want to use\nassertive directly.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.strings_0.0-3.tar.gz" ], "version": "0.0-3" } ] }, "r-assertive-types": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-assertive-base", "r-assertive-properties", "r-codetools" ], "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.types_0.0-3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=assertive.types" ], "licenses": [], "maintainers": [], "name": "r-assertive-types", "patches": [], "summary": "Assertions to Check Types of Variables. A set of predicates and\nassertions for checking the types of variables. This is mainly for use\nby other package developers who want to include run-time testing\nfeatures in their own packages. End-users will usually want to use\nassertive directly.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/assertive.types_0.0-3.tar.gz" ], "version": "0.0-3" } ] }, "r-assertthat": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/assertthat_0.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/assertthat_0.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/assertthat_0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=assertthat" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-assertthat", "patches": [], "summary": "Easy Pre and Post Assertions. An extension to stopifnot() that makes it\neasy to declare the pre and post conditions that you code should\nsatisfy, while also producing friendly error messages so that your users\nknow what's gone wrong.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/assertthat_0.1.tar.gz" ], "version": "0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/assertthat_0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/assertthat_0.2.1.tar.gz" ], "version": "0.2.1" } ] }, "r-automap": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ggplot2", "r-gstat", "r-lattice", "r-reshape", "r-sf", "r-sp", "r-stars" ], "downloads": [ "https://cloud.r-project.org/src/contrib/automap_1.1-9.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=automap" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-automap", "patches": [], "summary": "Automatic Interpolation Package. 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This allows us to avoid re-writing the same R code in both the\nconfigure script (for centrally administered R installations) and in the\nlazy installation mechanism (for distributed package binaries). It is\nhighly unlikely that developers - or, heaven forbid, end-users! - will\nneed to interact with this package directly; they should be using the\nbasilisk package instead.\n", "version": [ { "repositories": [ { "commit": "8314f9a72ecc0f20b180431aec93647320de8c2c", "type": "git", "url": "https://git.bioconductor.org/packages/basilisk.utils" } ], "version": "1.12.0" } ] }, "r-bayesm": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-rcpp", "r-rcpparmadillo" ], "downloads": [ "https://cloud.r-project.org/src/contrib/bayesm_3.1-6.tar.gz", "https://cloud.r-project.org/src/contrib/bayesm_3.1-5.tar.gz", "https://cloud.r-project.org/src/contrib/bayesm_3.1-4.tar.gz", "https://cloud.r-project.org/src/contrib/bayesm_3.1-3.tar.gz", "https://cloud.r-project.org/src/contrib/bayesm_3.1-2.tar.gz", "https://cloud.r-project.org/src/contrib/bayesm_3.1-1.tar.gz", "https://cloud.r-project.org/src/contrib/bayesm_3.1-0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=bayesm" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-bayesm", "patches": [], "summary": "Bayesian Inference for Marketing/Micro-Econometrics. Covers many\nimportant models used in marketing and micro-econometrics applications.\nThe package includes: Bayes Regression (univariate or multivariate dep\nvar), Bayes Seemingly Unrelated Regression (SUR), Binary and Ordinal\nProbit, Multinomial Logit (MNL) and Multinomial Probit (MNP),\nMultivariate Probit, Negative Binomial (Poisson) Regression,\nMultivariate Mixtures of Normals (including clustering), Dirichlet\nProcess Prior Density Estimation with normal base, Hierarchical Linear\nModels with normal prior and covariates, Hierarchical Linear Models with\na mixture of normals prior and covariates, Hierarchical Multinomial\nLogits with a mixture of normals prior and covariates, Hierarchical\nMultinomial Logits with a Dirichlet Process prior and covariates,\nHierarchical Negative Binomial Regression Models, Bayesian analysis of\nchoice-based conjoint data, Bayesian treatment of linear instrumental\nvariables models, Analysis of Multivariate Ordinal survey data with\nscale usage heterogeneity (as in Rossi et al, JASA (01)), Bayesian\nAnalysis of Aggregate Random Coefficient Logit Models as in BLP (see\nJiang, Manchanda, Rossi 2009) For further reference, consult our book,\nBayesian Statistics and Marketing by Rossi, Allenby and McCulloch (Wiley\n2005) and Bayesian Non- and Semi-Parametric Methods and Applications\n(Princeton U Press 2014).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/bayesm_3.1-0.1.tar.gz" ], "version": "3.1-0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bayesm_3.1-1.tar.gz" ], "version": "3.1-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bayesm_3.1-2.tar.gz" ], "version": "3.1-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bayesm_3.1-3.tar.gz" ], "version": "3.1-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bayesm_3.1-4.tar.gz" ], "version": "3.1-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bayesm_3.1-5.tar.gz" ], "version": "3.1-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bayesm_3.1-6.tar.gz" ], "version": "3.1-6" } ] }, "r-bayesplot": { "alias": [], "categories": [], "dependencies": [ "gmake", "pandoc", "r", "r-dplyr", "r-ggplot2", "r-ggridges", "r-glue", "r-posterior", "r-reshape2", "r-rlang", "r-tibble", "r-tidyr", "r-tidyselect" ], "downloads": [ "https://cloud.r-project.org/src/contrib/bayesplot_1.14.0.tar.gz", "https://cloud.r-project.org/src/contrib/bayesplot_1.11.1.tar.gz", "https://cloud.r-project.org/src/contrib/bayesplot_1.10.0.tar.gz", "https://cloud.r-project.org/src/contrib/bayesplot_1.9.0.tar.gz", "https://cloud.r-project.org/src/contrib/bayesplot_1.8.1.tar.gz", "https://cloud.r-project.org/src/contrib/bayesplot_1.8.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=bayesplot" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-bayesplot", "patches": [], "summary": "Plotting for Bayesian Models. Plotting functions for posterior analysis,\nMCMC diagnostics, prior and posterior predictive checks, and other\nvisualizations to support the applied Bayesian workflow advocated in\nGabry, Simpson, Vehtari, Betancourt, and Gelman (2019)\n. 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Provides a consistent\nC++ class interface for reading from and writing data to a variety of\ncommonly used matrix types. Ordinary matrices and several sparse/dense\nMatrix classes are directly supported, third-party S4 classes may be\nsupported by external linkage, while all other matrices are handled by\nDelayedArray block processing.\n", "version": [ { "repositories": [ { "commit": "6bd57b91d6428ac916f46572d685d3cb01a757f7", "type": "git", "url": "https://git.bioconductor.org/packages/beachmat" } ], "version": "1.0.2" }, { "repositories": [ { "commit": "ebae81772045a314e568c2f7d73ea3b27e7bf7d8", "type": "git", "url": "https://git.bioconductor.org/packages/beachmat" } ], "version": "1.2.1" }, { "repositories": [ { "commit": "e3b7a21cae0080d077a0d40e35d1d148f088720a", "type": "git", "url": "https://git.bioconductor.org/packages/beachmat" } ], "version": "1.4.0" }, { "repositories": [ { "commit": "2bdac6ce7b636fd16f78641a0bcc2181670107ab", "type": "git", "url": "https://git.bioconductor.org/packages/beachmat" } ], "version": "2.0.0" }, { "repositories": [ { "commit": "b7cc532d4a5b26d9073135cc9945258ea08e5079", "type": "git", "url": "https://git.bioconductor.org/packages/beachmat" } ], "version": "2.10.0" }, { "repositories": [ { "commit": "3e6af145bdcdf0a0b722d8256ba1a38b8a36b2f5", "type": "git", "url": "https://git.bioconductor.org/packages/beachmat" } ], "version": "2.12.0" }, { "repositories": [ { "commit": "5a4b85f4a22f3447f12d03157ab95de73f6137c6", "type": "git", "url": "https://git.bioconductor.org/packages/beachmat" } ], "version": "2.14.0" }, { "repositories": [ { "commit": "4cc8e50dcae767a2ef84ffc7a581ea182f05f300", "type": "git", "url": "https://git.bioconductor.org/packages/beachmat" } ], "version": "2.16.0" }, { "repositories": [ { "commit": "7d9dc6379017d723dda3e8dc9fd1f6de7fd33cdb", "type": "git", "url": "https://git.bioconductor.org/packages/beachmat" } ], "version": "2.6.4" } ] }, "r-beanplot": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/beanplot_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/beanplot_1.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=beanplot" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-beanplot", "patches": [], "summary": "Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot). 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Decomposition of time series into\ntrend, seasonal, and remainder components with methods for detecting and\ncharacterizing abrupt changes within the trend and seasonal components.\n'BFAST' can be used to analyze different types of satellite image time\nseries and can be applied to other disciplines dealing with seasonal or\nnon-seasonal time series, such as hydrology, climatology, and\neconometrics. The algorithm can be extended to label detected changes\nwith information on the parameters of the fitted piecewise linear\nmodels. 'BFAST' monitoring functionality is described in Verbesselt et\nal. (2010) . 'BFAST monitor' provides\nfunctionality to detect disturbance in near real-time based on 'BFAST'-\ntype models, and is described in Verbesselt et al. (2012)\n. 'BFAST Lite' approach is a flexible\napproach that handles missing data without interpolation, and will be\ndescribed in an upcoming paper. Furthermore, different models can now be\nused to fit the time series data and detect structural changes (breaks).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/bfast_1.5.7.tar.gz" ], "version": "1.5.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bfast_1.6.1.tar.gz" ], "version": "1.6.1" } ] }, "r-bfastspatial": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-bfast", "r-bitops", "r-gdalutils", "r-raster", "r-rgdal", "r-sp", "r-stringr", "r-zoo" ], "downloads": [ "https://github.com/loicdtx/bfastSpatial/archive/0.6.2.tar.gz", null ], "homepages": [ "https://github.com/loicdtx/bfastSpatial" ], "licenses": [], "maintainers": [], "name": "r-bfastspatial", "patches": [], "summary": "Pre-process gridded time-series data in order for them to be analyzed\nwith change detection algorithms such as bfast. Uses classes from the\nraster package and includes utilities to run the algorithms and post-\nprocess the results.\n", "version": [ { "downloads": [ "https://github.com/loicdtx/bfastSpatial/archive/0.6.2.tar.gz" ], "version": "0.6.2" } ] }, "r-bglr": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-mass", "r-truncnorm" ], "downloads": [ "https://cloud.r-project.org/src/contrib/BGLR_1.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/BGLR_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/BGLR_1.0.9.tar.gz", "https://cloud.r-project.org/src/contrib/BGLR_1.0.8.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=BGLR" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-bglr", "patches": [], "summary": "Bayesian Generalized Linear Regression.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/BGLR_1.0.8.tar.gz" ], "version": "1.0.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/BGLR_1.0.9.tar.gz" ], "version": "1.0.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/BGLR_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/BGLR_1.1.2.tar.gz" ], "version": "1.1.2" } ] }, "r-bh": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/BH_1.87.0-1.tar.gz", "https://cloud.r-project.org/src/contrib/BH_1.84.0-0.tar.gz", "https://cloud.r-project.org/src/contrib/BH_1.81.0-1.tar.gz", "https://cloud.r-project.org/src/contrib/BH_1.78.0-0.tar.gz", "https://cloud.r-project.org/src/contrib/BH_1.75.0-0.tar.gz", "https://cloud.r-project.org/src/contrib/BH_1.72.0-3.tar.gz", "https://cloud.r-project.org/src/contrib/BH_1.69.0-1.tar.gz", "https://cloud.r-project.org/src/contrib/BH_1.65.0-1.tar.gz", "https://cloud.r-project.org/src/contrib/BH_1.60.0-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=BH" ], "licenses": [], "maintainers": [], "name": "r-bh", "patches": [], "summary": "Boost C++ Header Files. Boost provides free peer-reviewed portable C++\nsource libraries. A large part of Boost is provided as C++ template code\nwhich is resolved entirely at compile-time without linking. This package\naims to provide the most useful subset of Boost libraries for template\nuse among CRAN package. By placing these libraries in this package, we\noffer a more efficient distribution system for CRAN as replication of\nthis code in the sources of other packages is avoided. As of release\n1.60.0-2, the following Boost libraries are included: 'algorithm' 'any'\n'bimap' 'bind' 'circular_buffer' 'concept' 'config' 'container'\n'date'_'time' 'detail' 'dynamic_bitset' 'exception' 'filesystem'\n'flyweight' 'foreach' 'functional' 'fusion' 'geometry' 'graph' 'heap'\n'icl' 'integer' 'interprocess' 'intrusive' 'io' 'iostreams' 'iterator'\n'math' 'move' 'mpl' 'multiprcecision' 'numeric' 'pending' 'phoenix'\n'preprocessor' 'random' 'range' 'smart_ptr' 'spirit' 'tuple'\n'type_trains' 'typeof' 'unordered' 'utility' 'uuid'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/BH_1.60.0-2.tar.gz" ], "version": "1.60.0-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/BH_1.65.0-1.tar.gz" ], "version": "1.65.0-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/BH_1.69.0-1.tar.gz" ], "version": "1.69.0-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/BH_1.72.0-3.tar.gz" ], "version": "1.72.0-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/BH_1.75.0-0.tar.gz" ], "version": "1.75.0-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/BH_1.78.0-0.tar.gz" ], "version": "1.78.0-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/BH_1.81.0-1.tar.gz" ], "version": "1.81.0-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/BH_1.84.0-0.tar.gz" ], "version": "1.84.0-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/BH_1.87.0-1.tar.gz" ], "version": "1.87.0-1" } ] }, "r-biasedurn": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/BiasedUrn_2.0.12.tar.gz", "https://cloud.r-project.org/src/contrib/BiasedUrn_2.0.9.tar.gz", "https://cloud.r-project.org/src/contrib/BiasedUrn_2.0.8.tar.gz", "https://cloud.r-project.org/src/contrib/BiasedUrn_1.07.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=BiasedUrn" ], "licenses": [], "maintainers": [], "name": "r-biasedurn", "patches": [], "summary": "Biased Urn Model Distributions. Statistical models of biased sampling in\nthe form of univariate and multivariate noncentral hypergeometric\ndistributions, including Wallenius' noncentral hypergeometric\ndistribution and Fisher's noncentral hypergeometric distribution (also\ncalled extended hypergeometric distribution). See vignette(\"UrnTheory\")\nfor explanation of these distributions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/BiasedUrn_1.07.tar.gz" ], "version": "1.07" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/BiasedUrn_2.0.12.tar.gz" ], "version": "2.0.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/BiasedUrn_2.0.8.tar.gz" ], "version": "2.0.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/BiasedUrn_2.0.9.tar.gz" ], "version": "2.0.9" } ] }, "r-bibtex": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-backports", "r-stringr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/bibtex_0.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/bibtex_0.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/bibtex_0.4.2.3.tar.gz", "https://cloud.r-project.org/src/contrib/bibtex_0.4.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=bibtex" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-bibtex", "patches": [], "summary": "Bibtex Parser. Utility to parse a bibtex file.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/bibtex_0.4.2.tar.gz" ], "version": "0.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bibtex_0.4.2.3.tar.gz" ], "version": "0.4.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bibtex_0.5.0.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bibtex_0.5.1.tar.gz" ], "version": "0.5.1" } ] }, "r-bigalgebra": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "fortran", "gmake", "r", "r-bh", "r-bigmemory", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/bigalgebra_1.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/bigalgebra_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/bigalgebra_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/bigalgebra_1.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/bigalgebra_0.8.4.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=bigalgebra" ], "licenses": [ "LGPL-3.0-only OR Apache-2.0" ], "maintainers": [], "name": "r-bigalgebra", "patches": [], "summary": "'BLAS' and 'LAPACK' Routines for Native R Matrices and 'big.matrix'\nObjects. Provides arithmetic functions for R matrix and 'big.matrix'\nobjects as well as functions for QR factorization, Cholesky\nfactorization, General eigenvalue, and Singular value decomposition\n(SVD). A method matrix multiplication and an arithmetic method -for\nmatrix addition, matrix difference- allows for mixed type operation -a\nmatrix class object and a big.matrix class object- and pure type\noperation for two big.matrix class objects.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/bigalgebra_0.8.4.2.tar.gz" ], "version": "0.8.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bigalgebra_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bigalgebra_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bigalgebra_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bigalgebra_1.1.1.tar.gz" ], "version": "1.1.1" } ] }, "r-biglm": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-dbi" ], "downloads": [ "https://cloud.r-project.org/src/contrib/biglm_0.9-3.tar.gz", null ], "homepages": [ "https://cran.r-project.org/web/packages/biglm/index.html" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-biglm", "patches": [], "summary": "Regression for data too large to fit in memory.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/biglm_0.9-3.tar.gz" ], "version": "0.9-3" } ] }, "r-bigmemory": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-bh", "r-bigmemory-sri", "r-rcpp", "r-uuid", "uuid" ], "downloads": [ "https://cloud.r-project.org/src/contrib/bigmemory_4.6.4.tar.gz", "https://cloud.r-project.org/src/contrib/bigmemory_4.6.1.tar.gz", "https://cloud.r-project.org/src/contrib/bigmemory_4.5.36.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=bigmemory" ], "licenses": [ "LGPL-3.0-only OR Apache-2.0" ], "maintainers": [], "name": "r-bigmemory", "patches": [], "summary": "Manage Massive Matrices with Shared Memory and Memory-Mapped. Files\nCreate, store, access, and manipulate massive matrices. Matrices are\nallocated to shared memory and may use memory-mapped files. Packages\n'biganalytics', 'bigtabulate', 'synchronicity', and 'bigalgebra' provide\nadvanced functionality.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/bigmemory_4.5.36.tar.gz" ], "version": "4.5.36" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bigmemory_4.6.1.tar.gz" ], "version": "4.6.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bigmemory_4.6.4.tar.gz" ], "version": "4.6.4" } ] }, "r-bigmemory-sri": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/bigmemory.sri_0.1.8.tar.gz", "https://cloud.r-project.org/src/contrib/bigmemory.sri_0.1.6.tar.gz", "https://cloud.r-project.org/src/contrib/bigmemory.sri_0.1.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=bigmemory.sri" ], "licenses": [], "maintainers": [], "name": "r-bigmemory-sri", "patches": [], "summary": "A shared resource interface for Bigmemory Project packages. This package\nprovides a shared resource interface for the bigmemory and synchronicity\npackages.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/bigmemory.sri_0.1.3.tar.gz" ], "version": "0.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bigmemory.sri_0.1.6.tar.gz" ], "version": "0.1.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bigmemory.sri_0.1.8.tar.gz" ], "version": "0.1.8" } ] }, "r-bindr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/bindr_0.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/bindr_0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=bindr" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-bindr", "patches": [], "summary": "Parametrized Active Bindings. Provides a simple interface for creating\nactive bindings where the bound function accepts additional arguments.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/bindr_0.1.tar.gz" ], "version": "0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bindr_0.1.1.tar.gz" ], "version": "0.1.1" } ] }, "r-bindrcpp": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-bindr", "r-plogr", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/bindrcpp_0.2.3.tar.gz", "https://cloud.r-project.org/src/contrib/bindrcpp_0.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/bindrcpp_0.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=bindrcpp" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-bindrcpp", "patches": [], "summary": "An 'Rcpp' Interface to Active Bindings. Provides an easy way to fill an\nenvironment with active bindings that call a C++ function.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/bindrcpp_0.2.tar.gz" ], "version": "0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bindrcpp_0.2.2.tar.gz" ], "version": "0.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bindrcpp_0.2.3.tar.gz" ], "version": "0.2.3" } ] }, "r-bio3d": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-rcpp", "zlib-api" ], "downloads": [ "https://cloud.r-project.org/src/contrib/bio3d_2.4-4.tar.gz", "https://cloud.r-project.org/src/contrib/bio3d_2.4-3.tar.gz", "https://cloud.r-project.org/src/contrib/bio3d_2.4-2.tar.gz", "https://cloud.r-project.org/src/contrib/bio3d_2.4-1.tar.gz", "https://cloud.r-project.org/src/contrib/bio3d_2.3-4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=bio3d" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-bio3d", "patches": [], "summary": "Biological Structure Analysis. Utilities to process, organize and\nexplore protein structure, sequence and dynamics data. Features include\nthe ability to read and write structure, sequence and dynamic trajectory\ndata, perform sequence and structure database searches, data summaries,\natom selection, alignment, superposition, rigid core identification,\nclustering, torsion analysis, distance matrix analysis, structure and\nsequence conservation analysis, normal mode analysis, principal\ncomponent analysis of heterogeneous structure data, and correlation\nnetwork analysis from normal mode and molecular dynamics data. In\naddition, various utility functions are provided to enable the\nstatistical and graphical power of the R environment to work with\nbiological sequence and structural data. Please refer to the URLs below\nfor more information.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/bio3d_2.3-4.tar.gz" ], "version": "2.3-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bio3d_2.4-1.tar.gz" ], "version": "2.4-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bio3d_2.4-2.tar.gz" ], "version": "2.4-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bio3d_2.4-3.tar.gz" ], "version": "2.4-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bio3d_2.4-4.tar.gz" ], "version": "2.4-4" } ] }, "r-biobase": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-biocgenerics" ], "downloads": [ "https://git.bioconductor.org/packages/Biobase" ], "homepages": [ "https://bioconductor.org/packages/Biobase" ], "licenses": [], "maintainers": [], "name": "r-biobase", "patches": [], "summary": "Biobase: Base functions for Bioconductor. Functions that are needed by\nmany other packages or which replace R functions.\n", "version": [ { "repositories": [ { "commit": "15f50912f3fa08ccb15c33b7baebe6b8a59ce075", "type": "git", "url": "https://git.bioconductor.org/packages/Biobase" } ], "version": "2.36.2" }, { "repositories": [ { "commit": "83f89829e0278ac014b0bc6664e621ac147ba424", "type": "git", "url": "https://git.bioconductor.org/packages/Biobase" } ], "version": "2.38.0" }, { "repositories": [ { "commit": "6555edbbcb8a04185ef402bfdea7ed8ac72513a5", "type": "git", "url": "https://git.bioconductor.org/packages/Biobase" } ], "version": "2.40.0" }, { "repositories": [ { "commit": "3e5bd466b99e3cc4af1b0c3b32687fa56d6f8e4d", "type": "git", "url": "https://git.bioconductor.org/packages/Biobase" } ], "version": "2.42.0" }, { "repositories": [ { "commit": "bde2077f66047986297ec35a688751cdce150dd3", "type": "git", "url": "https://git.bioconductor.org/packages/Biobase" } ], "version": "2.44.0" }, { "repositories": [ { "commit": "9927f90d0676382f2f99e099d8d2c8e2e6f1b4de", "type": "git", "url": "https://git.bioconductor.org/packages/Biobase" } ], "version": "2.50.0" }, { "repositories": [ { "commit": "8215d76ce44899e6d10fe8a2f503821a94ef6b40", "type": "git", "url": "https://git.bioconductor.org/packages/Biobase" } ], "version": "2.54.0" }, { "repositories": [ { "commit": "3b2dd91b333677c2f27257c7624014a55e73c52b", "type": "git", "url": "https://git.bioconductor.org/packages/Biobase" } ], "version": "2.56.0" }, { "repositories": [ { "commit": "767f2f33f158f233616178e12ce08cdb03d2a5a2", "type": "git", "url": "https://git.bioconductor.org/packages/Biobase" } ], "version": "2.58.0" }, { "repositories": [ { "commit": "8dc10d2d26dc0847740ff2b4f16cc1ae2e936464", "type": "git", "url": "https://git.bioconductor.org/packages/Biobase" } ], "version": "2.60.0" }, { "repositories": [ { "commit": "9fd33eac9ba400994ea1786c3d9b2ea3be5b71ee", "type": "git", "url": "https://git.bioconductor.org/packages/Biobase" } ], "version": "2.68.0" } ] }, "r-biocfilecache": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-curl", "r-dbi", "r-dbplyr", "r-dplyr", "r-filelock", "r-httr", "r-rappdirs", "r-rsqlite" ], "downloads": [ "https://git.bioconductor.org/packages/BiocFileCache" ], "homepages": [ "https://bioconductor.org/packages/BiocFileCache" ], "licenses": [], "maintainers": [], "name": "r-biocfilecache", "patches": [], "summary": "Manage Files Across Sessions. 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The most prominent examples of BioMart databases\nare maintain by Ensembl, which provides biomaRt users direct access to a\ndiverse set of data and enables a wide range of powerful online queries\nfrom gene annotation to database mining.\n", "version": [ { "repositories": [ { "commit": "f84d74424fa599f6d08f8db4612ca09914a9087f", "type": "git", "url": "https://git.bioconductor.org/packages/biomaRt" } ], "version": "2.32.1" }, { "repositories": [ { "commit": "a7030915fbc6120cc6812aefdedba423a207459b", "type": "git", "url": "https://git.bioconductor.org/packages/biomaRt" } ], "version": "2.34.2" }, { "repositories": [ { "commit": "5634e57e20199f9dc1f8b927eb3893143fc02f4f", "type": "git", "url": "https://git.bioconductor.org/packages/biomaRt" } ], "version": "2.36.1" }, { "repositories": [ { "commit": "16b997aba19a90a1c5fa64c442b1e7fcff99a658", "type": "git", "url": "https://git.bioconductor.org/packages/biomaRt" } ], "version": "2.38.0" }, { "repositories": [ { "commit": "ed9ddafb0d620168ea8e3ab4884f3457b8525c68", "type": "git", "url": "https://git.bioconductor.org/packages/biomaRt" } ], "version": "2.40.5" }, { "repositories": [ { "commit": "90d6abfdfa04259006f7b47efb10271ada76aec1", "type": "git", "url": "https://git.bioconductor.org/packages/biomaRt" } ], "version": "2.46.2" }, { "repositories": [ { "commit": "83a519ac13d73dc545cb6aafde5f4b5001e9e08f", "type": "git", "url": "https://git.bioconductor.org/packages/biomaRt" } ], "version": "2.50.3" }, { "repositories": [ { "commit": "cf4932ac02686da45ea36ff5137fa63cead8860b", "type": "git", "url": "https://git.bioconductor.org/packages/biomaRt" } ], "version": "2.52.0" }, { "repositories": [ { "commit": "4fb88fb56c684d5678f8288ba05db193e4881758", "type": "git", "url": "https://git.bioconductor.org/packages/biomaRt" } ], "version": "2.54.0" }, { "repositories": [ { "commit": "91ca89eff52e63c225f7e4eb24b765d08faf3ed9", "type": "git", "url": "https://git.bioconductor.org/packages/biomaRt" } ], "version": "2.56.0" } ] }, "r-biomartr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-biomart", "r-biostrings", "r-curl", "r-data-table", "r-downloader", "r-dplyr", "r-fs", "r-httr", "r-jsonlite", "r-philentropy", "r-purrr", "r-r-utils", "r-rcurl", "r-readr", "r-stringr", "r-tibble", "r-withr", "r-xml" ], "downloads": [ "https://cloud.r-project.org/src/contrib/biomartr_1.0.7.tar.gz", "https://cloud.r-project.org/src/contrib/biomartr_1.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/biomartr_0.9.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=biomartr" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-biomartr", "patches": [], "summary": "Genomic Data Retrieval. Perform large scale genomic data retrieval and\nfunctional annotation retrieval. This package aims to provide users with\na standardized way to automate genome, proteome, 'RNA', coding sequence\n('CDS'), 'GFF', and metagenome retrieval from 'NCBI RefSeq', 'NCBI\nGenbank', 'ENSEMBL', 'ENSEMBLGENOMES', and 'UniProt' databases.\nFurthermore, an interface to the 'BioMart' database (Smedley et al.\n(2009) ) allows users to retrieve\nfunctional annotation for genomic loci. In addition, users can download\nentire databases such as 'NCBI RefSeq' (Pruitt et al. (2007)\n), 'NCBI nr', 'NCBI nt', 'NCBI Genbank' (Benson\net al. (2013) ), etc. as well as 'ENSEMBL' and\n'ENSEMBLGENOMES' with only one command.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/biomartr_0.9.2.tar.gz" ], "version": "0.9.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/biomartr_1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/biomartr_1.0.7.tar.gz" ], "version": "1.0.7" } ] }, "r-biomformat": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-jsonlite", "r-matrix", "r-plyr", "r-rhdf5" ], "downloads": [ "https://git.bioconductor.org/packages/biomformat" ], "homepages": [ "https://bioconductor.org/packages/biomformat" ], "licenses": [], "maintainers": [], "name": "r-biomformat", "patches": [], "summary": "An interface package for the BIOM file format. This is an R package for\ninterfacing with the BIOM format. This package includes basic tools for\nreading biom-format files, accessing and subsetting data tables from a\nbiom object (which is more complex than a single table), as well as\nlimited support for writing a biom-object back to a biom-format file.\nThe design of this API is intended to match the python API and other\ntools included with the biom-format project, but with a decidedly \"R\nflavor\" that should be familiar to R users. 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The\nbiovizBase package is designed to provide a set of utilities, color\nschemes and conventions for genomic data. It serves as the base for\nvarious high-level packages for biological data visualization. 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Package 'bit64' provides\nserializable S3 atomic 64bit (signed) integers. These are useful for\nhandling database keys and exact counting in +-2^63. WARNING: do not use\nthem as replacement for 32bit integers, integer64 are not supported for\nsubscripting by R-core and they have different semantics when combined\nwith double, e.g. integer64 + double => integer64. Class integer64 can\nbe used in vectors, matrices, arrays and data.frames. Methods are\navailable for coercion from and to logicals, integers, doubles,\ncharacters and factors as well as many elementwise and summary\nfunctions. Many fast algorithmic operations such as 'match' and 'order'\nsupport inter- active data exploration and manipulation and optionally\nleverage caching.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/bit64_0.9-7.tar.gz" ], "version": "0.9-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bit64_4.0.5.tar.gz" ], "version": "4.0.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bit64_4.6.0-1.tar.gz" ], "version": "4.6.0-1" } ] }, "r-bitops": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/bitops_1.0-8.tar.gz", "https://cloud.r-project.org/src/contrib/bitops_1.0-7.tar.gz", "https://cloud.r-project.org/src/contrib/bitops_1.0-6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=bitops" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-bitops", "patches": [], "summary": "Bitwise Operations. 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The blob package provides\nthe blob object, a list of raw vectors, suitable for use as a column in\ndata frame.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/blob_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/blob_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/blob_1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/blob_1.2.2.tar.gz" ], "version": "1.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/blob_1.2.3.tar.gz" ], "version": "1.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/blob_1.2.4.tar.gz" ], "version": "1.2.4" } ] }, "r-blockmodeling": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-doparallel", "r-dorng", "r-foreach", "r-matrix" ], "downloads": [ "https://cloud.r-project.org/src/contrib/blockmodeling_1.1.5.tar.gz", "https://cloud.r-project.org/src/contrib/blockmodeling_1.1.4.tar.gz", "https://cloud.r-project.org/src/contrib/blockmodeling_1.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/blockmodeling_1.0.5.tar.gz", "https://cloud.r-project.org/src/contrib/blockmodeling_1.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/blockmodeling_0.3.4.tar.gz", "https://cloud.r-project.org/src/contrib/blockmodeling_0.3.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=blockmodeling" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-blockmodeling", "patches": [], "summary": "Generalized and Classical Blockmodeling of Valued Networks. This is\nprimarily meant as an implementation of generalized blockmodeling for\nvalued networks.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/blockmodeling_0.3.1.tar.gz" ], "version": "0.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/blockmodeling_0.3.4.tar.gz" ], "version": "0.3.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/blockmodeling_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/blockmodeling_1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/blockmodeling_1.1.3.tar.gz" ], "version": "1.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/blockmodeling_1.1.4.tar.gz" ], "version": "1.1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/blockmodeling_1.1.5.tar.gz" ], "version": "1.1.5" } ] }, "r-bluster": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-biocneighbors", "r-biocparallel", "r-cluster", "r-igraph", "r-matrix", "r-rcpp", "r-s4vectors" ], "downloads": [ "https://git.bioconductor.org/packages/bluster" ], "homepages": [ "https://bioconductor.org/packages/bluster" ], "licenses": [], "maintainers": [], "name": "r-bluster", "patches": [], "summary": "Clustering Algorithms for Bioconductor. Wraps common clustering\nalgorithms in an easily extended S4 framework. Backends are implemented\nfor hierarchical, k-means and graph-based clustering. Several utilities\nare also provided to compare and evaluate clustering results.\n", "version": [ { "repositories": [ { "commit": "32340420e67a184e39238e46143c00151057924c", "type": "git", "url": "https://git.bioconductor.org/packages/bluster" } ], "version": "1.10.0" }, { "repositories": [ { "commit": "ff86c7d8d36233e838d4f00e6a4e173e7bf16816", "type": "git", "url": "https://git.bioconductor.org/packages/bluster" } ], "version": "1.6.0" }, { "repositories": [ { "commit": "156115c8960c0b66b2c588d9fd8bbdfe56e5f0be", "type": "git", "url": "https://git.bioconductor.org/packages/bluster" } ], "version": "1.8.0" } ] }, "r-bmp": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/bmp_0.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=bmp" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-bmp", "patches": [], "summary": "Read Windows Bitmap (BMP) Images. Reads Windows BMP format images.\nCurrently limited to 8 bit greyscale images and 24,32 bit (A)RGB images.\nPure R implementation without external dependencies.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/bmp_0.3.tar.gz" ], "version": "0.3" } ] }, "r-bookdown": { "alias": [], "categories": [], "dependencies": [ "gmake", "pandoc", "r", "r-htmltools", "r-jquerylib", "r-knitr", "r-rmarkdown", "r-tinytex", "r-xfun", "r-yaml" ], "downloads": [ "https://cloud.r-project.org/src/contrib/bookdown_0.40.tar.gz", "https://cloud.r-project.org/src/contrib/bookdown_0.33.tar.gz", "https://cloud.r-project.org/src/contrib/bookdown_0.29.tar.gz", "https://cloud.r-project.org/src/contrib/bookdown_0.26.tar.gz", "https://cloud.r-project.org/src/contrib/bookdown_0.24.tar.gz", "https://cloud.r-project.org/src/contrib/bookdown_0.21.tar.gz", "https://cloud.r-project.org/src/contrib/bookdown_0.12.tar.gz", "https://cloud.r-project.org/src/contrib/bookdown_0.5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=bookdown" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-bookdown", "patches": [], "summary": "Authoring Books and Technical Documents with R Markdown. Output formats\nand utilities for authoring books and technical documents with R\nMarkdown.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/bookdown_0.12.tar.gz" ], "version": "0.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bookdown_0.21.tar.gz" ], "version": "0.21" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bookdown_0.24.tar.gz" ], "version": "0.24" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bookdown_0.26.tar.gz" ], "version": "0.26" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bookdown_0.29.tar.gz" ], "version": "0.29" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bookdown_0.33.tar.gz" ], "version": "0.33" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bookdown_0.40.tar.gz" ], "version": "0.40" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/bookdown_0.5.tar.gz" ], "version": "0.5" } ] }, "r-boot": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/boot_1.3-32.tar.gz", "https://cloud.r-project.org/src/contrib/boot_1.3-30.tar.gz", "https://cloud.r-project.org/src/contrib/boot_1.3-28.1.tar.gz", "https://cloud.r-project.org/src/contrib/boot_1.3-28.tar.gz", "https://cloud.r-project.org/src/contrib/boot_1.3-25.tar.gz", "https://cloud.r-project.org/src/contrib/boot_1.3-23.tar.gz", "https://cloud.r-project.org/src/contrib/boot_1.3-22.tar.gz", "https://cloud.r-project.org/src/contrib/boot_1.3-20.tar.gz", "https://cloud.r-project.org/src/contrib/boot_1.3-18.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=boot" ], "licenses": [ "custom" ], "maintainers": [], "name": "r-boot", "patches": [], "summary": "Bootstrap Functions (Originally by Angelo Canty for S). Functions and\ndatasets for bootstrapping from the book \"Bootstrap Methods and Their\nApplication\" by A. C. Davison and D. V. Hinkley (1997, CUP), originally\nwritten by Angelo Canty for S.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/boot_1.3-18.tar.gz" ], "version": "1.3-18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/boot_1.3-20.tar.gz" ], "version": "1.3-20" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/boot_1.3-22.tar.gz" ], "version": "1.3-22" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/boot_1.3-23.tar.gz" ], "version": "1.3-23" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/boot_1.3-25.tar.gz" ], "version": "1.3-25" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/boot_1.3-28.tar.gz" ], "version": "1.3-28" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/boot_1.3-28.1.tar.gz" ], "version": "1.3-28.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/boot_1.3-30.tar.gz" ], "version": "1.3-30" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/boot_1.3-32.tar.gz" ], "version": "1.3-32" } ] }, "r-boruta": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ranger" ], "downloads": [ "https://cloud.r-project.org/src/contrib/Boruta_8.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/Boruta_7.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/Boruta_6.0.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=Boruta" ], "licenses": [], "maintainers": [], "name": "r-boruta", "patches": [], "summary": "Wrapper Algorithm for All Relevant Feature Selection. An all relevant\nfeature selection wrapper algorithm. It finds relevant features by\ncomparing original attributes' importance with importance achievable at\nrandom, estimated using their permuted copies (shadows).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/Boruta_6.0.0.tar.gz" ], "version": "6.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Boruta_7.0.0.tar.gz" ], "version": "7.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Boruta_8.0.0.tar.gz" ], "version": "8.0.0" } ] }, "r-brew": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/brew_1.0-10.tar.gz", "https://cloud.r-project.org/src/contrib/brew_1.0-8.tar.gz", "https://cloud.r-project.org/src/contrib/brew_1.0-7.tar.gz", "https://cloud.r-project.org/src/contrib/brew_1.0-6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=brew" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-brew", "patches": [], "summary": "Templating Framework for Report Generation. Brew implements a templating\nframework for mixing text and R code for report generation. brew\ntemplate syntax is similar to PHP, Ruby's erb module, Java Server Pages,\nand Python's psp module.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/brew_1.0-10.tar.gz" ], "version": "1.0-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/brew_1.0-6.tar.gz" ], "version": "1.0-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/brew_1.0-7.tar.gz" ], "version": "1.0-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/brew_1.0-8.tar.gz" ], "version": "1.0-8" } ] }, "r-bridgesampling": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-brobdingnag", "r-coda", "r-matrix", "r-mvtnorm", "r-scales", "r-stringr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/bridgesampling_1.1-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=bridgesampling" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-bridgesampling", "patches": [], "summary": "Bridge Sampling for Marginal Likelihoods and Bayes Factors. Provides\nfunctions for estimating marginal likelihoods, Bayes factors, posterior\nmodel probabilities, and normalizing constants in general, via different\nversions of bridge sampling (Meng & Wong, 1996,\n).\nGronau, Singmann, & Wagenmakers (2020) .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/bridgesampling_1.1-2.tar.gz" ], "version": "1.1-2" } ] }, "r-brio": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/brio_1.1.5.tar.gz", "https://cloud.r-project.org/src/contrib/brio_1.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/brio_1.1.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=brio" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-brio", "patches": [], "summary": "Basic R Input Output. Functions to handle basic input output, these\nfunctions always read and write UTF-8 (8-bit Unicode Transformation\nFormat) files and provide more explicit control over line endings.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/brio_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/brio_1.1.3.tar.gz" ], "version": "1.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/brio_1.1.5.tar.gz" ], "version": "1.1.5" } ] }, "r-brms": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-abind", "r-backports", "r-bayesplot", "r-bridgesampling", "r-coda", "r-future", "r-future-apply", "r-ggplot2", "r-glue", "r-loo", "r-matrix", "r-matrixstats", "r-mgcv", "r-nleqslv", "r-nlme", "r-posterior", "r-projpred", "r-rcpp", "r-rlang", "r-rstan", "r-rstantools", "r-shinystan" ], "downloads": [ "https://cloud.r-project.org/src/contrib/brms_2.23.0.tar.gz", "https://cloud.r-project.org/src/contrib/brms_2.21.0.tar.gz", "https://cloud.r-project.org/src/contrib/brms_2.19.0.tar.gz", "https://cloud.r-project.org/src/contrib/brms_2.18.0.tar.gz", "https://cloud.r-project.org/src/contrib/brms_2.17.0.tar.gz", "https://cloud.r-project.org/src/contrib/brms_2.16.3.tar.gz", "https://cloud.r-project.org/src/contrib/brms_2.16.1.tar.gz", "https://cloud.r-project.org/src/contrib/brms_2.15.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=brms" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-brms", "patches": [], "summary": "Bayesian Regression Models using 'Stan'. Fit Bayesian generalized\n(non-)linear multivariate multilevel models using 'Stan' for full\nBayesian inference. A wide range of distributions and link functions are\nsupported, allowing users to fit - among others - linear, robust linear,\ncount data, survival, response times, ordinal, zero-inflated, hurdle,\nand even self-defined mixture models all in a multilevel context.\nFurther modeling options include non-linear and smooth terms, auto-\ncorrelation structures, censored data, meta-analytic standard errors,\nand quite a few more. In addition, all parameters of the response\ndistribution can be predicted in order to perform distributional\nregression. Prior specifications are flexible and explicitly encourage\nusers to apply prior distributions that actually reflect their beliefs.\nModel fit can easily be assessed and compared with posterior predictive\nchecks and leave-one-out cross-validation. References: Burkner (2017)\n; Burkner (2018) ;\nCarpenter et al. (2017) .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/brms_2.15.0.tar.gz" ], "version": "2.15.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/brms_2.16.1.tar.gz" ], "version": "2.16.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/brms_2.16.3.tar.gz" ], "version": "2.16.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/brms_2.17.0.tar.gz" ], "version": "2.17.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/brms_2.18.0.tar.gz" ], "version": "2.18.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/brms_2.19.0.tar.gz" ], "version": "2.19.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/brms_2.21.0.tar.gz" ], "version": "2.21.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/brms_2.23.0.tar.gz" ], "version": "2.23.0" } ] }, "r-brobdingnag": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-matrix" ], "downloads": [ "https://cloud.r-project.org/src/contrib/Brobdingnag_1.2-9.tar.gz", "https://cloud.r-project.org/src/contrib/Brobdingnag_1.2-7.tar.gz", "https://cloud.r-project.org/src/contrib/Brobdingnag_1.2-6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=Brobdingnag" ], "licenses": [], "maintainers": [], "name": "r-brobdingnag", "patches": [], "summary": "Very Large Numbers in R. Handles very large numbers in R. Real numbers\nare held using their natural logarithms, plus a logical flag indicating\nsign. The package includes a vignette that gives a step-by-step\nintroduction to using S4 methods.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/Brobdingnag_1.2-6.tar.gz" ], "version": "1.2-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Brobdingnag_1.2-7.tar.gz" ], "version": "1.2-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Brobdingnag_1.2-9.tar.gz" ], "version": "1.2-9" } ] }, "r-broom": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-backports", "r-cli", "r-dplyr", "r-ellipsis", "r-generics", "r-ggplot2", "r-glue", "r-lifecycle", "r-nlme", "r-plyr", "r-psych", "r-purrr", "r-reshape2", "r-rlang", "r-stringr", "r-tibble", "r-tidyr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/broom_1.0.10.tar.gz", "https://cloud.r-project.org/src/contrib/broom_1.0.6.tar.gz", "https://cloud.r-project.org/src/contrib/broom_1.0.4.tar.gz", "https://cloud.r-project.org/src/contrib/broom_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/broom_0.8.0.tar.gz", "https://cloud.r-project.org/src/contrib/broom_0.7.12.tar.gz", "https://cloud.r-project.org/src/contrib/broom_0.7.11.tar.gz", "https://cloud.r-project.org/src/contrib/broom_0.7.10.tar.gz", "https://cloud.r-project.org/src/contrib/broom_0.7.9.tar.gz", "https://cloud.r-project.org/src/contrib/broom_0.7.3.tar.gz", "https://cloud.r-project.org/src/contrib/broom_0.5.2.tar.gz", "https://cloud.r-project.org/src/contrib/broom_0.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/broom_0.4.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=broom" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-broom", "patches": [], "summary": "Convert Statistical Objects into Tidy Tibbles. Summarizes key\ninformation about statistical objects in tidy tibbles. This makes it\neasy to report results, create plots and consistently work with large\nnumbers of models at once. Broom provides three verbs that each provide\ndifferent types of information about a model. tidy() summarizes\ninformation about model components such as coefficients of a regression.\nglance() reports information about an entire model, such as goodness of\nfit measures like AIC and BIC. augment() adds information about\nindividual observations to a dataset, such as fitted values or influence\nmeasures.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/broom_0.4.2.tar.gz" ], "version": "0.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/broom_0.5.1.tar.gz" ], "version": "0.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/broom_0.5.2.tar.gz" ], "version": "0.5.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/broom_0.7.10.tar.gz" ], "version": "0.7.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/broom_0.7.11.tar.gz" ], "version": "0.7.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/broom_0.7.12.tar.gz" ], "version": "0.7.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/broom_0.7.3.tar.gz" ], "version": "0.7.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/broom_0.7.9.tar.gz" ], "version": "0.7.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/broom_0.8.0.tar.gz" ], "version": "0.8.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/broom_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/broom_1.0.10.tar.gz" ], "version": "1.0.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/broom_1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/broom_1.0.6.tar.gz" ], "version": "1.0.6" } ] }, "r-broom-helpers": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-broom", "r-cli", "r-dplyr", "r-labelled", "r-lifecycle", "r-purrr", "r-rlang", "r-stringr", "r-tibble", "r-tidyr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/broom.helpers_1.16.0.tar.gz", null ], "homepages": [ "https://larmarange.github.io/broom.helpers/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-broom-helpers", "patches": [], "summary": "Provides suite of functions to work with regression model\n'broom::tidy()' tibbles. The suite includes functions to group\nregression model terms by variable, insert reference and header rows for\ncategorical variables, add variable labels, and more.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/broom.helpers_1.16.0.tar.gz" ], "version": "1.16.0" } ] }, "r-bsgenome": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-biocgenerics", "r-biostrings", "r-genomeinfodb", "r-genomicranges", "r-iranges", "r-matrixstats", "r-rsamtools", "r-rtracklayer", "r-s4vectors", "r-xvector" ], "downloads": [ "https://git.bioconductor.org/packages/BSgenome" ], "homepages": [ "https://bioconductor.org/packages/BSgenome" ], "licenses": [], "maintainers": [], "name": "r-bsgenome", "patches": [], "summary": "Software infrastructure for efficient representation of full genomes and\ntheir SNPs. 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This\npackages does exactly that.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/callr_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/callr_3.0.0.tar.gz" ], "version": "3.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/callr_3.2.0.tar.gz" ], "version": "3.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/callr_3.3.1.tar.gz" ], "version": "3.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/callr_3.4.3.tar.gz" ], "version": "3.4.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/callr_3.5.1.tar.gz" ], "version": "3.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/callr_3.7.0.tar.gz" ], "version": "3.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/callr_3.7.2.tar.gz" ], "version": "3.7.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/callr_3.7.3.tar.gz" ], "version": "3.7.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/callr_3.7.6.tar.gz" ], "version": "3.7.6" } ] }, "r-car": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-abind", "r-cardata", "r-formula", "r-lme4", "r-maptools", "r-mass", "r-mgcv", "r-nlme", "r-nnet", "r-pbkrtest", "r-quantreg", "r-rio", "r-scales" ], "downloads": [ "https://cloud.r-project.org/src/contrib/car_3.1-3.tar.gz", "https://cloud.r-project.org/src/contrib/car_3.1-2.tar.gz", "https://cloud.r-project.org/src/contrib/car_3.1-1.tar.gz", "https://cloud.r-project.org/src/contrib/car_3.1-0.tar.gz", "https://cloud.r-project.org/src/contrib/car_3.0-13.tar.gz", "https://cloud.r-project.org/src/contrib/car_3.0-12.tar.gz", "https://cloud.r-project.org/src/contrib/car_3.0-11.tar.gz", "https://cloud.r-project.org/src/contrib/car_3.0-10.tar.gz", "https://cloud.r-project.org/src/contrib/car_3.0-3.tar.gz", "https://cloud.r-project.org/src/contrib/car_3.0-2.tar.gz", "https://cloud.r-project.org/src/contrib/car_2.1-4.tar.gz", "https://cloud.r-project.org/src/contrib/car_2.1-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=car" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-car", "patches": [], "summary": "Companion to Applied Regression. Functions and Datasets to Accompany J.\nFox and S. Weisberg, An R Companion to Applied Regression, Second\nEdition, Sage, 2011.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/car_2.1-2.tar.gz" ], "version": "2.1-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/car_2.1-4.tar.gz" ], "version": "2.1-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/car_3.0-10.tar.gz" ], "version": "3.0-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/car_3.0-11.tar.gz" ], "version": "3.0-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/car_3.0-12.tar.gz" ], "version": "3.0-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/car_3.0-13.tar.gz" ], "version": "3.0-13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/car_3.0-2.tar.gz" ], "version": "3.0-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/car_3.0-3.tar.gz" ], "version": "3.0-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/car_3.1-0.tar.gz" ], "version": "3.1-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/car_3.1-1.tar.gz" ], "version": "3.1-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/car_3.1-2.tar.gz" ], "version": "3.1-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/car_3.1-3.tar.gz" ], "version": "3.1-3" } ] }, "r-caracas": { "alias": [], "categories": [], "dependencies": [ "gmake", "python", "r", "r-doby", "r-magrittr", "r-matrix", "r-reticulate" ], "downloads": [ "https://cloud.r-project.org/src/contrib/caracas_2.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/caracas_2.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/caracas_1.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/caracas_1.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/caracas_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/caracas_1.0.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=caracas" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-caracas", "patches": [], "summary": "Computer Algebra. Computer algebra via the 'SymPy' library\n(). This makes it possible to solve equations\nsymbolically, find symbolic integrals, symbolic sums and other important\nquantities.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/caracas_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caracas_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caracas_1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caracas_1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caracas_2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caracas_2.1.1.tar.gz" ], "version": "2.1.1" } ] }, "r-cardata": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/carData_3.0-5.tar.gz", "https://cloud.r-project.org/src/contrib/carData_3.0-4.tar.gz", "https://cloud.r-project.org/src/contrib/carData_3.0-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=carData" ], "licenses": [], "maintainers": [], "name": "r-cardata", "patches": [], "summary": "Companion to Applied Regression Data Sets. Datasets to Accompany J. Fox\nand S. Weisberg, An R Companion to Applied Regression, Third Edition,\nSage (2019).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/carData_3.0-2.tar.gz" ], "version": "3.0-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/carData_3.0-4.tar.gz" ], "version": "3.0-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/carData_3.0-5.tar.gz" ], "version": "3.0-5" } ] }, "r-caret": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-car", "r-e1071", "r-foreach", "r-ggplot2", "r-lattice", "r-modelmetrics", "r-nlme", "r-plyr", "r-proc", "r-recipes", "r-reshape2", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/caret_6.0-94.tar.gz", "https://cloud.r-project.org/src/contrib/caret_6.0-93.tar.gz", "https://cloud.r-project.org/src/contrib/caret_6.0-92.tar.gz", "https://cloud.r-project.org/src/contrib/caret_6.0-90.tar.gz", "https://cloud.r-project.org/src/contrib/caret_6.0-86.tar.gz", "https://cloud.r-project.org/src/contrib/caret_6.0-84.tar.gz", "https://cloud.r-project.org/src/contrib/caret_6.0-83.tar.gz", "https://cloud.r-project.org/src/contrib/caret_6.0-73.tar.gz", "https://cloud.r-project.org/src/contrib/caret_6.0-70.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=caret" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-caret", "patches": [], "summary": "Classification and Regression Training. Misc functions for training and\nplotting classification and regression models.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/caret_6.0-70.tar.gz" ], "version": "6.0-70" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caret_6.0-73.tar.gz" ], "version": "6.0-73" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caret_6.0-83.tar.gz" ], "version": "6.0-83" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caret_6.0-84.tar.gz" ], "version": "6.0-84" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caret_6.0-86.tar.gz" ], "version": "6.0-86" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caret_6.0-90.tar.gz" ], "version": "6.0-90" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caret_6.0-92.tar.gz" ], "version": "6.0-92" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caret_6.0-93.tar.gz" ], "version": "6.0-93" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caret_6.0-94.tar.gz" ], "version": "6.0-94" } ] }, "r-caretensemble": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-caret", "r-data-table", "r-digest", "r-ggplot2", "r-gridextra", "r-lattice", "r-patchwork", "r-pbapply", "r-plyr", "r-rlang" ], "downloads": [ "https://cloud.r-project.org/src/contrib/caretEnsemble_4.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/caretEnsemble_2.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/caretEnsemble_2.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=caretEnsemble" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-caretensemble", "patches": [], "summary": "Ensembles of Caret Models. Functions for creating ensembles of caret\nmodels: caretList() and caretStack(). caretList() is a convenience\nfunction for fitting multiple caret::train() models to the same dataset.\ncaretStack() will make linear or non-linear combinations of these\nmodels, using a caret::train() model as a meta-model, and\ncaretEnsemble() will make a robust linear combination of models using a\nGLM.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/caretEnsemble_2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caretEnsemble_2.0.2.tar.gz" ], "version": "2.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caretEnsemble_4.0.0.tar.gz" ], "version": "4.0.0" } ] }, "r-caroline": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/caroline_0.9.2.tar.gz", "https://cloud.r-project.org/src/contrib/caroline_0.9.0.tar.gz", "https://cloud.r-project.org/src/contrib/caroline_0.8.0.tar.gz", "https://cloud.r-project.org/src/contrib/caroline_0.7.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=caroline" ], "licenses": [ "Artistic-2.0" ], "maintainers": [], "name": "r-caroline", "patches": [], "summary": "A Collection of Database, Data Structure, Visualization, andUtility\nFunctions for R. The caroline R library contains dozens of functions\nuseful for: database migration (dbWriteTable2), database style joins &\naggregation (nerge, groupBy & bestBy), data structure conversion (nv,\ntab2df), legend table making (sstable & leghead), plot annotation\n(labsegs & mvlabs), data visualization (violins, pies & raPlot),\ncharacter string manipulation (m & pad), file I/O (write.delim), batch\nscripting and more. The package's greatest contributions lie in the\ndatabase style merge, aggregation and interface functions as well as in\nit's extensive use and propagation of row, column and vector names in\nmost functions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/caroline_0.7.6.tar.gz" ], "version": "0.7.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caroline_0.8.0.tar.gz" ], "version": "0.8.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caroline_0.9.0.tar.gz" ], "version": "0.9.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caroline_0.9.2.tar.gz" ], "version": "0.9.2" } ] }, "r-category": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotate", "r-annotationdbi", "r-biobase", "r-biocgenerics", "r-dbi", "r-genefilter", "r-graph", "r-gseabase", "r-matrix", "r-rbgl" ], "downloads": [ "https://git.bioconductor.org/packages/Category" ], "homepages": [ "https://bioconductor.org/packages/Category" ], "licenses": [], "maintainers": [], "name": "r-category", "patches": [], "summary": "Category Analysis. A collection of tools for performing category (gene\nset enrichment) analysis.\n", "version": [ { "repositories": [ { "commit": "382c817a2371671a72f8f949dfb4050361ebabcd", "type": "git", "url": "https://git.bioconductor.org/packages/Category" } ], "version": "2.42.1" }, { "repositories": [ { "commit": "eaba50c1a801ba7983e6ffdf41ab0fc9cfe5a626", "type": "git", "url": "https://git.bioconductor.org/packages/Category" } ], "version": "2.44.0" }, { "repositories": [ { "commit": "c8aeee4dee3fb120f25e0647dd06e895a3ffbc2a", "type": "git", "url": "https://git.bioconductor.org/packages/Category" } ], "version": "2.46.0" }, { "repositories": [ { "commit": "941819a3d9dd129f47b4ea00fa74032e405be3a5", "type": "git", "url": "https://git.bioconductor.org/packages/Category" } ], "version": "2.48.1" }, { "repositories": [ { "commit": "d96f0b29cb778f6697b44d7ba7b0abd7086074a9", "type": "git", "url": "https://git.bioconductor.org/packages/Category" } ], "version": "2.50.0" }, { "repositories": [ { "commit": "ad478caa9d693dbc2770608e79dd852375b9a223", "type": "git", "url": "https://git.bioconductor.org/packages/Category" } ], "version": "2.56.0" }, { "repositories": [ { "commit": "55210d8c539474954d18cf913a219dce883eac2e", "type": "git", "url": "https://git.bioconductor.org/packages/Category" } ], "version": "2.60.0" }, { "repositories": [ { "commit": "0fe801c0c443aebd5d4cefa8c30e4e7d0931b673", "type": "git", "url": "https://git.bioconductor.org/packages/Category" } ], "version": "2.62.0" }, { "repositories": [ { "commit": "b512cbeb22fc50a2f6d767a2eef356fb143a974e", "type": "git", "url": "https://git.bioconductor.org/packages/Category" } ], "version": "2.64.0" }, { "repositories": [ { "commit": "404c5e4bebeb91b04ac62a821f9eea5610d98b96", "type": "git", "url": "https://git.bioconductor.org/packages/Category" } ], "version": "2.66.0" } ] }, "r-catools": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-bitops" ], "downloads": [ "https://cloud.r-project.org/src/contrib/caTools_1.18.3.tar.gz", "https://cloud.r-project.org/src/contrib/caTools_1.18.2.tar.gz", "https://cloud.r-project.org/src/contrib/caTools_1.18.1.tar.gz", "https://cloud.r-project.org/src/contrib/caTools_1.17.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/caTools_1.17.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/caTools_1.17.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=caTools" ], "licenses": [], "maintainers": [], "name": "r-catools", "patches": [], "summary": "Moving Window Statistics, GIF, Base64, ROC AUC, etc. Contains several\nbasic utility functions including: moving (rolling, running) window\nstatistic functions, read/write for GIF and ENVI binary files, fast\ncalculation of AUC, LogitBoost classifier, base64 encoder/decoder,\nround-off-error-free sum and cumsum, etc.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/caTools_1.17.1.tar.gz" ], "version": "1.17.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caTools_1.17.1.1.tar.gz" ], "version": "1.17.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caTools_1.17.1.2.tar.gz" ], "version": "1.17.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caTools_1.18.1.tar.gz" ], "version": "1.18.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caTools_1.18.2.tar.gz" ], "version": "1.18.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/caTools_1.18.3.tar.gz" ], "version": "1.18.3" } ] }, "r-cca": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-fda", "r-fields" ], "downloads": [ "https://cloud.r-project.org/src/contrib/CCA_1.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/CCA_1.2.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=CCA" ], "licenses": [], "maintainers": [], "name": "r-cca", "patches": [], "summary": "Canonical Correlation Analysis. Provides a set of functions that extend\nthe 'cancor' function with new numerical and graphical outputs. It also\ninclude a regularized extension of the canonical correlation analysis to\ndeal with datasets with more variables than observations.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/CCA_1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/CCA_1.2.2.tar.gz" ], "version": "1.2.2" } ] }, "r-ccp": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/CCP_1.2.tar.gz", "https://cloud.r-project.org/src/contrib/CCP_1.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=CCP" ], "licenses": [], "maintainers": [], "name": "r-ccp", "patches": [], "summary": "Significance Tests for Canonical Correlation Analysis (CCA).\nSignificance tests for canonical correlation analysis, including\nasymptotic tests and a Monte Carlo method\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/CCP_1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/CCP_1.2.tar.gz" ], "version": "1.2" } ] }, "r-cdcfluview": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-dplyr", "r-httr", "r-jsonlite", "r-mmwrweek", "r-progress", "r-purrr", "r-readr", "r-sf", "r-tibble", "r-units", "r-xml2" ], "downloads": [ "https://cloud.r-project.org/src/contrib/cdcfluview_0.9.4.tar.gz", "https://cloud.r-project.org/src/contrib/cdcfluview_0.9.2.tar.gz", "https://cloud.r-project.org/src/contrib/cdcfluview_0.9.0.tar.gz", "https://cloud.r-project.org/src/contrib/cdcfluview_0.7.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=cdcfluview" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-cdcfluview", "patches": [], "summary": "Retrieve Flu Season Data from the United States Centers for Disease\nControl and Prevention ('CDC') 'FluView' Portal. The 'U.S.' Centers for\nDisease Control ('CDC') maintains a portal\n for\naccessing state, regional and national influenza statistics as well as\nMortality Surveillance Data. The web interface makes it difficult and\ntime-consuming to select and retrieve influenza data. Tools are provided\nto access the data provided by the portal's underlying 'API'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/cdcfluview_0.7.0.tar.gz" ], "version": "0.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cdcfluview_0.9.0.tar.gz" ], "version": "0.9.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cdcfluview_0.9.2.tar.gz" ], "version": "0.9.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cdcfluview_0.9.4.tar.gz" ], "version": "0.9.4" } ] }, "r-cellranger": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-rematch", "r-tibble" ], "downloads": [ "https://cloud.r-project.org/src/contrib/cellranger_1.1.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=cellranger" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-cellranger", "patches": [], "summary": "Translate Spreadsheet Cell Ranges to Rows and Columns. Helper functions\nto work with spreadsheets and the \"A1:D10\" style of cell range\nspecification.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/cellranger_1.1.0.tar.gz" ], "version": "1.1.0" } ] }, "r-champ": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-bumphunter", "r-champdata", "r-combinat", "r-dendextend", "r-dmrcate", "r-dnacopy", "r-doparallel", "r-dt", "r-genomicranges", "r-ggplot2", "r-globaltest", "r-goseq", "r-hmisc", "r-illumina450probevariants-db", "r-illuminahumanmethylation450kmanifest", "r-illuminahumanmethylationepicanno-ilm10b4-hg19", "r-illuminahumanmethylationepicmanifest", "r-illuminaio", "r-impute", "r-isva", "r-kpmt", "r-limma", "r-marray", "r-matrixstats", "r-minfi", "r-missmethyl", "r-plotly", "r-plyr", "r-preprocesscore", "r-prettydoc", "r-quadprog", "r-qvalue", "r-rcolorbrewer", "r-rmarkdown", "r-rpmm", "r-shiny", "r-shinythemes", "r-sva", "r-watermelon" ], "downloads": [ "https://git.bioconductor.org/packages/ChAMP" ], "homepages": [ "https://bioconductor.org/packages/ChAMP" ], "licenses": [], "maintainers": [], "name": "r-champ", "patches": [], "summary": "Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and\nEPIC. The package includes quality control metrics, a selection of\nnormalization methods and novel methods to identify differentially\nmethylated regions and to highlight copy number alterations.\n", "version": [ { "repositories": [ { "commit": "99ea0463bce59f5b06bcc91f479dcd4065074896", "type": "git", "url": "https://git.bioconductor.org/packages/ChAMP" } ], "version": "2.20.1" }, { "repositories": [ { "commit": "7ba19da74b61e1c40ced162ba753f0f9b9c7647a", "type": "git", "url": "https://git.bioconductor.org/packages/ChAMP" } ], "version": "2.24.0" }, { "repositories": [ { "commit": "1548910bf53e1e5f7a8d80c83b742a94297d8a34", "type": "git", "url": "https://git.bioconductor.org/packages/ChAMP" } ], "version": "2.26.0" }, { "repositories": [ { "commit": "3d27ac67a738afea8cc9ece6ea1301120e4b48f7", "type": "git", "url": "https://git.bioconductor.org/packages/ChAMP" } ], "version": "2.28.0" }, { "repositories": [ { "commit": "b6ff6670d239c2517aa57144a793ea93da3c7b42", "type": "git", "url": "https://git.bioconductor.org/packages/ChAMP" } ], "version": "2.30.0" } ] }, "r-champdata": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-biocgenerics", "r-genomicranges" ], "downloads": [ "https://git.bioconductor.org/packages/ChAMPdata" ], "homepages": [ "https://bioconductor.org/packages/ChAMPdata" ], "licenses": [], "maintainers": [], "name": "r-champdata", "patches": [], "summary": "Packages for ChAMP package. Provides datasets needed for ChAMP including\na test dataset and blood controls for CNA analysis.\n", "version": [ { "repositories": [ { "commit": "eeedd4c477fac79f00743da8ff7da064221c5f3d", "type": "git", "url": "https://git.bioconductor.org/packages/ChAMPdata" } ], "version": "2.22.0" }, { "repositories": [ { "commit": "ea7882707921af33eefab5133a1ccd4a409f045d", "type": "git", "url": "https://git.bioconductor.org/packages/ChAMPdata" } ], "version": "2.26.0" }, { "repositories": [ { "commit": "601555bf599828b6cfa125beffa51aebccdc8503", "type": "git", "url": "https://git.bioconductor.org/packages/ChAMPdata" } ], "version": "2.28.0" }, { "repositories": [ { "commit": "6e05b8f7b004b1a5185ec4b387c32725e8bd95cb", "type": "git", "url": "https://git.bioconductor.org/packages/ChAMPdata" } ], "version": "2.30.0" }, { "repositories": [ { "commit": "98a94978001b6a28543257e72a036c43d61e67ef", "type": "git", "url": "https://git.bioconductor.org/packages/ChAMPdata" } ], "version": "2.32.0" } ] }, "r-checkmate": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-backports" ], "downloads": [ "https://cloud.r-project.org/src/contrib/checkmate_2.3.3.tar.gz", "https://cloud.r-project.org/src/contrib/checkmate_2.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/checkmate_2.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/checkmate_2.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/checkmate_1.9.4.tar.gz", "https://cloud.r-project.org/src/contrib/checkmate_1.8.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=checkmate" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "r-checkmate", "patches": [], "summary": "Fast and Versatile Argument Checks. Tests and assertions to perform\nfrequent argument checks. A substantial part of the package was written\nin C to minimize any worries about execution time overhead.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/checkmate_1.8.4.tar.gz" ], "version": "1.8.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/checkmate_1.9.4.tar.gz" ], "version": "1.9.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/checkmate_2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/checkmate_2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/checkmate_2.3.2.tar.gz" ], "version": "2.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/checkmate_2.3.3.tar.gz" ], "version": "2.3.3" } ] }, "r-checkpoint": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-jsonlite", "r-pkgdepends", "r-withr", "r-yaml" ], "downloads": [ "https://cloud.r-project.org/src/contrib/checkpoint_1.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/checkpoint_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/checkpoint_1.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/checkpoint_0.4.10.tar.gz", "https://cloud.r-project.org/src/contrib/checkpoint_0.4.6.tar.gz", "https://cloud.r-project.org/src/contrib/checkpoint_0.4.3.tar.gz", "https://cloud.r-project.org/src/contrib/checkpoint_0.3.15.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=checkpoint" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-checkpoint", "patches": [], "summary": "Install Packages from Snapshots on the Checkpoint Server for\nReproducibility. The goal of checkpoint is to solve the problem of\npackage reproducibility in R. Specifically, checkpoint allows you to\ninstall packages as they existed on CRAN on a specific snapshot date as\nif you had a CRAN time machine. To achieve reproducibility, the\ncheckpoint() function installs the packages required or called by your\nproject and scripts to a local library exactly as they existed at the\nspecified point in time. Only those packages are available to your\nproject, thereby avoiding any package updates that came later and may\nhave altered your results. In this way, anyone using checkpoint's\ncheckpoint() can ensure the reproducibility of your scripts or projects\nat any time. To create the snapshot archives, once a day (at midnight\nUTC) Microsoft refreshes the Austria CRAN mirror on the \"Microsoft R\nArchived Network\" server (). Immediately\nafter completion of the rsync mirror process, the process takes a\nsnapshot, thus creating the archive. Snapshot archives exist starting\nfrom 2014-09-17.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/checkpoint_0.3.15.tar.gz" ], "version": "0.3.15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/checkpoint_0.4.10.tar.gz" ], "version": "0.4.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/checkpoint_0.4.3.tar.gz" ], "version": "0.4.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/checkpoint_0.4.6.tar.gz" ], "version": "0.4.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/checkpoint_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/checkpoint_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/checkpoint_1.0.2.tar.gz" ], "version": "1.0.2" } ] }, "r-chemometrics": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-class", "r-e1071", "r-lars", "r-mass", "r-mclust", "r-nnet", "r-pcapp", "r-pls", "r-robustbase", "r-rpart", "r-som" ], "downloads": [ "https://cloud.r-project.org/src/contrib/chemometrics_1.4.4.tar.gz", "https://cloud.r-project.org/src/contrib/chemometrics_1.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/chemometrics_1.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/chemometrics_1.3.9.tar.gz", "https://cloud.r-project.org/src/contrib/chemometrics_1.3.8.tar.gz", "https://cloud.r-project.org/src/contrib/chemometrics_1.3.7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=chemometrics" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-chemometrics", "patches": [], "summary": "Multivariate Statistical Analysis in Chemometrics. R companion to the\nbook \"Introduction to Multivariate Statistical Analysis in Chemometrics\"\nwritten by K. Varmuza and P. Filzmoser (2009).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/chemometrics_1.3.7.tar.gz" ], "version": "1.3.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/chemometrics_1.3.8.tar.gz" ], "version": "1.3.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/chemometrics_1.3.9.tar.gz" ], "version": "1.3.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/chemometrics_1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/chemometrics_1.4.2.tar.gz" ], "version": "1.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/chemometrics_1.4.4.tar.gz" ], "version": "1.4.4" } ] }, "r-chipseq": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-biocgenerics", "r-genomicranges", "r-iranges", "r-lattice", "r-s4vectors", "r-shortread" ], "downloads": [ "https://git.bioconductor.org/packages/chipseq" ], "homepages": [ "https://bioconductor.org/packages/chipseq" ], "licenses": [], "maintainers": [ "dorton21" ], "name": "r-chipseq", "patches": [], "summary": "A package for analyzing chipseq data, Tools for helping process short\nread data for chipseq experiments\n", "version": [ { "repositories": [ { "commit": "84bcbc0b7ad732730b5989a308f1624a6a358df1", "type": "git", "url": "https://git.bioconductor.org/packages/chipseq" } ], "version": "1.40.0" }, { "repositories": [ { "commit": "b64d0d28e9fcf0fdab9a7f9c521baf729426a594", "type": "git", "url": "https://git.bioconductor.org/packages/chipseq" } ], "version": "1.44.0" }, { "repositories": [ { "commit": "76b00397cd117d5432158f50fc1032d50485bd24", "type": "git", "url": "https://git.bioconductor.org/packages/chipseq" } ], "version": "1.46.0" }, { "repositories": [ { "commit": "9c78296001b6dd4102318879c8504dac70015822", "type": "git", "url": "https://git.bioconductor.org/packages/chipseq" } ], "version": "1.48.0" }, { "repositories": [ { "commit": "0bdfa25828b1d65f629e96c8e832061fd7ff7935", "type": "git", "url": "https://git.bioconductor.org/packages/chipseq" } ], "version": "1.50.0" } ] }, "r-chron": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/chron_2.3-61.tar.gz", "https://cloud.r-project.org/src/contrib/chron_2.3-60.tar.gz", "https://cloud.r-project.org/src/contrib/chron_2.3-58.tar.gz", "https://cloud.r-project.org/src/contrib/chron_2.3-57.tar.gz", "https://cloud.r-project.org/src/contrib/chron_2.3-56.tar.gz", "https://cloud.r-project.org/src/contrib/chron_2.3-53.tar.gz", "https://cloud.r-project.org/src/contrib/chron_2.3-52.tar.gz", "https://cloud.r-project.org/src/contrib/chron_2.3-47.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=chron" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-chron", "patches": [], "summary": "Chronological objects which can handle dates and times. Provides\nchronological objects which can handle dates and times.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/chron_2.3-47.tar.gz" ], "version": "2.3-47" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/chron_2.3-52.tar.gz" ], "version": "2.3-52" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/chron_2.3-53.tar.gz" ], "version": "2.3-53" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/chron_2.3-56.tar.gz" ], "version": "2.3-56" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/chron_2.3-57.tar.gz" ], "version": "2.3-57" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/chron_2.3-58.tar.gz" ], "version": "2.3-58" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/chron_2.3-60.tar.gz" ], "version": "2.3-60" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/chron_2.3-61.tar.gz" ], "version": "2.3-61" } ] }, "r-circlize": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-colorspace", "r-globaloptions", "r-shape" ], "downloads": [ "https://cloud.r-project.org/src/contrib/circlize_0.4.16.tar.gz", "https://cloud.r-project.org/src/contrib/circlize_0.4.15.tar.gz", "https://cloud.r-project.org/src/contrib/circlize_0.4.13.tar.gz", "https://cloud.r-project.org/src/contrib/circlize_0.4.12.tar.gz", "https://cloud.r-project.org/src/contrib/circlize_0.4.6.tar.gz", "https://cloud.r-project.org/src/contrib/circlize_0.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/circlize_0.4.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=circlize" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-circlize", "patches": [], "summary": "Circular Visualization. Circular layout is an efficient way for the\nvisualization of huge amounts of information. Here this package provides\nan implementation of circular layout generation in R as well as an\nenhancement of available software. The flexibility of the package is\nbased on the usage of low-level graphics functions such that self-\ndefined high-level graphics can be easily implemented by users for\nspecific purposes. Together with the seamless connection between the\npowerful computational and visual environment in R, it gives users more\nconvenience and freedom to design figures for better understanding\ncomplex patterns behind multiple dimensional data. The package is\ndescribed in Gu et al. 2014 .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/circlize_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/circlize_0.4.1.tar.gz" ], "version": "0.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/circlize_0.4.12.tar.gz" ], "version": "0.4.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/circlize_0.4.13.tar.gz" ], "version": "0.4.13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/circlize_0.4.15.tar.gz" ], "version": "0.4.15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/circlize_0.4.16.tar.gz" ], "version": "0.4.16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/circlize_0.4.6.tar.gz" ], "version": "0.4.6" } ] }, "r-circstats": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-boot", "r-mass" ], "downloads": [ "https://cloud.r-project.org/src/contrib/CircStats_0.2-6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=CircStats" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [ "dorton21" ], "name": "r-circstats", "patches": [], "summary": "Circular Statistics, from \"Topics in Circular Statistics\" (2001).\nCircular Statistics, from \"Topics in Circular Statistics\" (2001) S. Rao\nJammalamadaka and A. SenGupta, World Scientific.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/CircStats_0.2-6.tar.gz" ], "version": "0.2-6" } ] }, "r-clarabel": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "rust" ], "downloads": [ "https://cloud.r-project.org/src/contrib/clarabel_0.9.0.tar.gz", null ], "homepages": [ "https://oxfordcontrol.github.io/clarabel-r/" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "r-clarabel", "patches": [], "summary": "A versatile interior point solver that solves linear programs (LPs),\nquadratic programs (QPs), second-order cone programs (SOCPs),\nsemidefinite programs (SDPs), and problems with exponential and power\ncone constraints (). For quadratic\nobjectives, unlike interior point solvers based on the standard\nhomogeneous self-dual embedding (HSDE) model, 'Clarabel' handles\nquadratic objective without requiring any epigraphical reformulation of\nits objective function. It can therefore be significantly faster than\nother HSDE-based solvers for problems with quadratic objective\nfunctions. Infeasible problems are detected using using a homogeneous\nembedding technique.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/clarabel_0.9.0.tar.gz" ], "version": "0.9.0" } ] }, "r-class": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-mass" ], "downloads": [ "https://cloud.r-project.org/src/contrib/class_7.3-22.tar.gz", "https://cloud.r-project.org/src/contrib/class_7.3-21.tar.gz", "https://cloud.r-project.org/src/contrib/class_7.3-20.tar.gz", "https://cloud.r-project.org/src/contrib/class_7.3-19.tar.gz", "https://cloud.r-project.org/src/contrib/class_7.3-17.tar.gz", "https://cloud.r-project.org/src/contrib/class_7.3-15.tar.gz", "https://cloud.r-project.org/src/contrib/class_7.3-14.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=class" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-class", "patches": [], "summary": "Functions for Classification. Various functions for classification,\nincluding k-nearest neighbour, Learning Vector Quantization and Self-\nOrganizing Maps.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/class_7.3-14.tar.gz" ], "version": "7.3-14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/class_7.3-15.tar.gz" ], "version": "7.3-15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/class_7.3-17.tar.gz" ], "version": "7.3-17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/class_7.3-19.tar.gz" ], "version": "7.3-19" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/class_7.3-20.tar.gz" ], "version": "7.3-20" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/class_7.3-21.tar.gz" ], "version": "7.3-21" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/class_7.3-22.tar.gz" ], "version": "7.3-22" } ] }, "r-classint": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-class", "r-e1071", "r-kernsmooth" ], "downloads": [ "https://cloud.r-project.org/src/contrib/classInt_0.4-10.tar.gz", "https://cloud.r-project.org/src/contrib/classInt_0.4-9.tar.gz", "https://cloud.r-project.org/src/contrib/classInt_0.4-8.tar.gz", "https://cloud.r-project.org/src/contrib/classInt_0.4-3.tar.gz", "https://cloud.r-project.org/src/contrib/classInt_0.4-1.tar.gz", "https://cloud.r-project.org/src/contrib/classInt_0.3-3.tar.gz", "https://cloud.r-project.org/src/contrib/classInt_0.3-1.tar.gz", "https://cloud.r-project.org/src/contrib/classInt_0.1-24.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=classInt" ], "licenses": [], "maintainers": [], "name": "r-classint", "patches": [], "summary": "Choose Univariate Class Intervals. Selected commonly used methods for\nchoosing univariate class intervals for mapping or other graphics\npurposes.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/classInt_0.1-24.tar.gz" ], "version": "0.1-24" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/classInt_0.3-1.tar.gz" ], "version": "0.3-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/classInt_0.3-3.tar.gz" ], "version": "0.3-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/classInt_0.4-1.tar.gz" ], "version": "0.4-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/classInt_0.4-10.tar.gz" ], "version": "0.4-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/classInt_0.4-3.tar.gz" ], "version": "0.4-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/classInt_0.4-8.tar.gz" ], "version": "0.4-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/classInt_0.4-9.tar.gz" ], "version": "0.4-9" } ] }, "r-cli": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-assertthat", "r-crayon", "r-fansi", "r-glue" ], "downloads": [ "https://cloud.r-project.org/src/contrib/cli_3.6.3.tar.gz", "https://cloud.r-project.org/src/contrib/cli_3.6.1.tar.gz", "https://cloud.r-project.org/src/contrib/cli_3.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/cli_3.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/cli_3.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/cli_3.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/cli_3.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/cli_3.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/cli_2.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/cli_2.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/cli_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/cli_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/cli_1.0.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=cli" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-cli", "patches": [], "summary": "Helpers for Developing Command Line Interfaces. A suite of tools to\nbuild attractive command line interfaces ('CLIs'), from semantic\nelements: headings, lists, alerts, paragraphs, etc. Supports custom\nthemes via a 'CSS'-like language. It also contains a number of lower\nlevel 'CLI' elements: rules, boxes, trees, and 'Unicode' symbols with\n'ASCII' alternatives. It integrates with the 'crayon' package to support\n'ANSI' terminal colors.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/cli_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cli_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cli_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cli_2.0.2.tar.gz" ], "version": "2.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cli_2.2.0.tar.gz" ], "version": "2.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cli_3.0.1.tar.gz" ], "version": "3.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cli_3.1.0.tar.gz" ], "version": "3.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cli_3.1.1.tar.gz" ], "version": "3.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cli_3.2.0.tar.gz" ], "version": "3.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cli_3.3.0.tar.gz" ], "version": "3.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cli_3.4.1.tar.gz" ], "version": "3.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cli_3.6.1.tar.gz" ], "version": "3.6.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cli_3.6.3.tar.gz" ], "version": "3.6.3" } ] }, "r-clipr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "xclip" ], "downloads": [ "https://cloud.r-project.org/src/contrib/clipr_0.8.0.tar.gz", "https://cloud.r-project.org/src/contrib/clipr_0.7.1.tar.gz", "https://cloud.r-project.org/src/contrib/clipr_0.7.0.tar.gz", "https://cloud.r-project.org/src/contrib/clipr_0.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/clipr_0.4.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=clipr" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-clipr", "patches": [], "summary": "Read and Write from the System Clipboard. Simple utility functions to\nread from and write to the Windows, OS X, and X11 clipboards.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/clipr_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/clipr_0.5.0.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/clipr_0.7.0.tar.gz" ], "version": "0.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/clipr_0.7.1.tar.gz" ], "version": "0.7.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/clipr_0.8.0.tar.gz" ], "version": "0.8.0" } ] }, "r-clisymbols": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/clisymbols_1.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=clisymbols" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-clisymbols", "patches": [], "summary": "Unicode Symbols at the R Prompt. A small subset of Unicode symbols, that\nare useful when building command line applications. They fall back to\nalternatives on terminals that do not support Unicode. Many symbols were\ntaken from the 'figures' 'npm' package (see\n).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/clisymbols_1.2.0.tar.gz" ], "version": "1.2.0" } ] }, "r-clock": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-cli", "r-cpp11", "r-lifecycle", "r-rlang", "r-tzdb", "r-vctrs" ], "downloads": [ "https://cloud.r-project.org/src/contrib/clock_0.7.1.tar.gz", "https://cloud.r-project.org/src/contrib/clock_0.6.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=clock" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-clock", "patches": [], "summary": "Date-Time Types and Tools. Provides a comprehensive library for date-\ntime manipulations using a new family of orthogonal date-time classes\n(durations, time points, zoned-times, and calendars) that partition\nresponsibilities so that the complexities of time zones are only\nconsidered when they are really needed. Capabilities include: date-time\nparsing, formatting, arithmetic, extraction and updating of components,\nand rounding.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/clock_0.6.1.tar.gz" ], "version": "0.6.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/clock_0.7.1.tar.gz" ], "version": "0.7.1" } ] }, "r-clue": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-cluster" ], "downloads": [ "https://cloud.r-project.org/src/contrib/clue_0.3-65.tar.gz", "https://cloud.r-project.org/src/contrib/clue_0.3-64.tar.gz", "https://cloud.r-project.org/src/contrib/clue_0.3-62.tar.gz", "https://cloud.r-project.org/src/contrib/clue_0.3-61.tar.gz", "https://cloud.r-project.org/src/contrib/clue_0.3-60.tar.gz", "https://cloud.r-project.org/src/contrib/clue_0.3-58.tar.gz", "https://cloud.r-project.org/src/contrib/clue_0.3-57.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=clue" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-clue", "patches": [], "summary": "Cluster Ensembles.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/clue_0.3-57.tar.gz" ], "version": "0.3-57" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/clue_0.3-58.tar.gz" ], "version": "0.3-58" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/clue_0.3-60.tar.gz" ], "version": "0.3-60" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/clue_0.3-61.tar.gz" ], "version": "0.3-61" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/clue_0.3-62.tar.gz" ], "version": "0.3-62" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/clue_0.3-64.tar.gz" ], "version": "0.3-64" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/clue_0.3-65.tar.gz" ], "version": "0.3-65" } ] }, "r-cluster": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/cluster_2.1.6.tar.gz", "https://cloud.r-project.org/src/contrib/cluster_2.1.4.tar.gz", "https://cloud.r-project.org/src/contrib/cluster_2.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/cluster_2.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/cluster_2.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/cluster_2.0.7-1.tar.gz", "https://cloud.r-project.org/src/contrib/cluster_2.0.5.tar.gz", "https://cloud.r-project.org/src/contrib/cluster_2.0.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=cluster" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-cluster", "patches": [], "summary": " \"Finding Groups in Data\": Cluster Analysis Extended Rousseeuw et al.\nMethods for Cluster analysis. Much extended the original from Peter\nRousseeuw, Anja Struyf and Mia Hubert, based on Kaufman and Rousseeuw\n(1990) \"Finding Groups in Data\".\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/cluster_2.0.4.tar.gz" ], "version": "2.0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cluster_2.0.5.tar.gz" ], "version": "2.0.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cluster_2.0.7-1.tar.gz" ], "version": "2.0.7-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cluster_2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cluster_2.1.2.tar.gz" ], "version": "2.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cluster_2.1.3.tar.gz" ], "version": "2.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cluster_2.1.4.tar.gz" ], "version": "2.1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cluster_2.1.6.tar.gz" ], "version": "2.1.6" } ] }, "r-clustergeneration": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-mass" ], "downloads": [ "https://cloud.r-project.org/src/contrib/clusterGeneration_1.3.8.tar.gz", "https://cloud.r-project.org/src/contrib/clusterGeneration_1.3.7.tar.gz", "https://cloud.r-project.org/src/contrib/clusterGeneration_1.3.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=clusterGeneration" ], "licenses": [], "maintainers": [], "name": "r-clustergeneration", "patches": [], "summary": "Random Cluster Generation (with Specified Degree of Separation). We\ndeveloped the clusterGeneration package to provide functions for\ngenerating random clusters, generating random covariance/correlation\nmatrices, calculating a separation index (data and population version)\nfor pairs of clusters or cluster distributions, and 1-D and 2-D\nprojection plots to visualize clusters. The package also contains a\nfunction to generate random clusters based on factorial designs with\nfactors such as degree of separation, number of clusters, number of\nvariables, number of noisy variables.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/clusterGeneration_1.3.4.tar.gz" ], "version": "1.3.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/clusterGeneration_1.3.7.tar.gz" ], "version": "1.3.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/clusterGeneration_1.3.8.tar.gz" ], "version": "1.3.8" } ] }, "r-clusterprofiler": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotationdbi", "r-dose", "r-downloader", "r-dplyr", "r-enrichplot", "r-ggplot2", "r-go-db", "r-gosemsim", "r-gson", "r-magrittr", "r-plyr", "r-qvalue", "r-rlang", "r-rvcheck", "r-tidyr", "r-yulab-utils" ], "downloads": [ "https://git.bioconductor.org/packages/clusterProfiler" ], "homepages": [ "https://bioconductor.org/packages/clusterProfiler" ], "licenses": [], "maintainers": [], "name": "r-clusterprofiler", "patches": [], "summary": "statistical analysis and visualization of functional profiles for genes\nand gene clusters. This package implements methods to analyze and\nvisualize functional profiles (GO and KEGG) of gene and gene clusters.\n", "version": [ { "repositories": [ { "commit": "39927ef7ff6f97e27557bcf4147e2133b364fd3c", "type": "git", "url": "https://git.bioconductor.org/packages/clusterProfiler" } ], "version": "3.10.1" }, { "repositories": [ { "commit": "6ec88d10832bdfd938e9c065b377015eedb7eee2", "type": "git", "url": "https://git.bioconductor.org/packages/clusterProfiler" } ], "version": "3.12.0" }, { "repositories": [ { "commit": "064a6e612ce27e260e33af78b907bee4065ff821", "type": "git", "url": "https://git.bioconductor.org/packages/clusterProfiler" } ], "version": "3.18.0" }, { "repositories": [ { "commit": "b86b00e8405fe130e439362651a5567736e2d9d7", "type": "git", "url": "https://git.bioconductor.org/packages/clusterProfiler" } ], "version": "3.4.4" }, { "repositories": [ { "commit": "ff15e3dba69b93bc872d5f5d07821cd9ae20d829", "type": "git", "url": "https://git.bioconductor.org/packages/clusterProfiler" } ], "version": "3.6.0" }, { "repositories": [ { "commit": "81e1a7ac49e4713703c55f87f945b20de5e7ab36", "type": "git", "url": "https://git.bioconductor.org/packages/clusterProfiler" } ], "version": "3.8.1" }, { "repositories": [ { "commit": "4ebb9de8e03eedc971f54a57cf5bf1b250ed43d5", "type": "git", "url": "https://git.bioconductor.org/packages/clusterProfiler" } ], "version": "4.2.2" }, { "repositories": [ { "commit": "daad11fb80be2dd9b825e0b484815a0a2b1592a4", "type": "git", "url": "https://git.bioconductor.org/packages/clusterProfiler" } ], "version": "4.4.1" }, { "repositories": [ { "commit": "9fca9a45ca1793884d8dcfd0f077353dbf75df29", "type": "git", "url": "https://git.bioconductor.org/packages/clusterProfiler" } ], "version": "4.4.4" }, { "repositories": [ { "commit": "2644118c36a3aa14408bc0c97ac20a545e40344d", "type": "git", "url": "https://git.bioconductor.org/packages/clusterProfiler" } ], "version": "4.6.0" }, { "repositories": [ { "commit": "35a69cf05855b01775658def2f3f26596902f5db", "type": "git", "url": "https://git.bioconductor.org/packages/clusterProfiler" } ], "version": "4.8.0" } ] }, "r-cmdstanr": { "alias": [], "categories": [], "dependencies": [ "cmdstan", "gmake", "r", "r-checkmate", "r-data-table", "r-jsonlite", "r-posterior", "r-processx", "r-r6", "r-withr" ], "downloads": [ "https://github.com/stan-dev/cmdstanr/archive/refs/tags/v0.5.3.tar.gz", "https://github.com/stan-dev/cmdstanr/archive/refs/tags/v0.5.2.tar.gz", "https://github.com/stan-dev/cmdstanr/archive/refs/tags/v0.5.1.tar.gz", null ], "homepages": [ "https://mc-stan.org/cmdstanr/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "r-cmdstanr", "patches": [], "summary": "R Interface to 'CmdStan'. A lightweight interface to 'Stan' . The 'CmdStanR' interface is an alternative to 'RStan' that\ncalls the command line interface for compilation and running algorithms\ninstead of interfacing with C++ via 'Rcpp'. This has many benefits\nincluding always being compatible with the latest version of Stan, fewer\ninstallation errors, fewer unexpected crashes in RStudio, and a more\npermissive license.\n", "version": [ { "downloads": [ "https://github.com/stan-dev/cmdstanr/archive/refs/tags/v0.5.1.tar.gz" ], "version": "0.5.1" }, { "downloads": [ "https://github.com/stan-dev/cmdstanr/archive/refs/tags/v0.5.2.tar.gz" ], "version": "0.5.2" }, { "downloads": [ "https://github.com/stan-dev/cmdstanr/archive/refs/tags/v0.5.3.tar.gz" ], "version": "0.5.3" } ] }, "r-cner": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-annotate", "r-biocgenerics", "r-biostrings", "r-dbi", "r-genomeinfodb", "r-genomicalignments", "r-genomicranges", "r-ggplot2", "r-go-db", "r-iranges", "r-keggrest", "r-powerlaw", "r-r-utils", "r-readr", "r-reshape2", "r-rsqlite", "r-rtracklayer", "r-s4vectors", "r-xvector", "zlib-api" ], "downloads": [ "https://git.bioconductor.org/packages/CNEr" ], "homepages": [ "https://bioconductor.org/packages/CNEr" ], "licenses": [], "maintainers": [], "name": "r-cner", "patches": [], "summary": "CNE Detection and Visualization. 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A normalization and copy number variation calling\nprocedure for whole exome DNA sequencing data. CODEX relies on the\navailability of multiple samples processed using the same sequencing\npipeline for normalization, and does not require matched controls. The\nnormalization model in CODEX includes terms that specifically remove\nbiases due to GC content, exon length and targeting and amplification\nefficiency, and latent systemic artifacts. 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A more generic Colour Picker 'RStudio' Addin is also provided to\nlet you select colours to use in your R code.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/colourpicker_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/colourpicker_1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/colourpicker_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/colourpicker_1.3.0.tar.gz" ], "version": "1.3.0" } ] }, "r-combinat": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/combinat_0.0-8.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=combinat" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-combinat", "patches": [], "summary": "combinatorics utilities. routines for combinatorics.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/combinat_0.0-8.tar.gz" ], "version": "0.0-8" } ] }, "r-commonmark": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/commonmark_1.9.1.tar.gz", "https://cloud.r-project.org/src/contrib/commonmark_1.9.0.tar.gz", "https://cloud.r-project.org/src/contrib/commonmark_1.8.1.tar.gz", "https://cloud.r-project.org/src/contrib/commonmark_1.8.0.tar.gz", "https://cloud.r-project.org/src/contrib/commonmark_1.7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=commonmark" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "r-commonmark", "patches": [], "summary": "High Performance CommonMark and Github Markdown Rendering in R. 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Complex heatmaps are efficient to visualize\nassociations between different sources of data sets and reveal potential\npatterns. 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Provides functions for the consistent\nanalysis of compositional data (e.g. portions of substances) and\npositive numbers (e.g. concentrations) in the way proposed by J.\nAitchison and V. Pawlowsky-Glahn.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/compositions_1.40-2.tar.gz" ], "version": "1.40-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/compositions_2.0-1.tar.gz" ], "version": "2.0-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/compositions_2.0-4.tar.gz" ], "version": "2.0-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/compositions_2.0-6.tar.gz" ], "version": "2.0-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/compositions_2.0-8.tar.gz" ], "version": "2.0-8" } ] }, "r-compquadform": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/CompQuadForm_1.4.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=CompQuadForm" ], "licenses": [], "maintainers": [], "name": "r-compquadform", "patches": [], "summary": "Distribution Function of Quadratic Forms in Normal Variables. Computes\nthe distribution function of quadratic forms in normal variables using\nImhof's method, Davies's algorithm, Farebrother's algorithm or Liu et\nal.'s algorithm.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/CompQuadForm_1.4.3.tar.gz" ], "version": "1.4.3" } ] }, "r-condop": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-earth", "r-genomeinfodb", "r-genomicranges", "r-iranges", "r-mclust", "r-plyr", "r-randomforest", "r-rminer", "r-s4vectors", "r-seqinr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/CONDOP_1.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=CONDOP" ], "licenses": [], "maintainers": [], "name": "r-condop", "patches": [], "summary": "Condition-Dependent Operon Predictions. An implementation of the\ncomputational strategy for the comprehensive analysis of condition-\ndependent operon maps in prokaryotes proposed by Fortino et al. (2014)\n. It uses RNA-seq transcriptome profiles\nto improve prokaryotic operon map inference.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/CONDOP_1.0.tar.gz" ], "version": "1.0" } ] }, "r-conflicted": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-memoise", "r-rlang" ], "downloads": [ "https://cloud.r-project.org/src/contrib/conflicted_1.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=conflicted" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-conflicted", "patches": [], "summary": "An Alternative Conflict Resolution Strategy. R's default conflict\nmanagement system gives the most recently loaded package precedence.\nThis can make it hard to detect conflicts, particularly when they arise\nbecause a package update creates ambiguity that did not previously\nexist. 'conflicted' takes a different approach, making every conflict an\nerror and forcing you to choose which function to use.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/conflicted_1.2.0.tar.gz" ], "version": "1.2.0" } ] }, "r-conquer": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-caret", "r-matrix", "r-matrixstats", "r-rcpp", "r-rcpparmadillo" ], "downloads": [ "https://cloud.r-project.org/src/contrib/conquer_1.3.3.tar.gz", "https://cloud.r-project.org/src/contrib/conquer_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/conquer_1.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/conquer_1.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/conquer_1.0.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=conquer" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-conquer", "patches": [], "summary": "Convolution-Type Smoothed Quantile Regression. Fast and accurate\nconvolution-type smoothed quantile regression. Implemented using\nBarzilai-Borwein gradient descent with a Huber regression warm start.\nConstruct confidence intervals for regression coefficients using\nmultiplier bootstrap.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/conquer_1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/conquer_1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/conquer_1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/conquer_1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/conquer_1.3.3.tar.gz" ], "version": "1.3.3" } ] }, "r-consrank": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-gtools", "r-proxy", "r-rgl", "r-rlist", "r-tidyr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ConsRank_2.1.4.tar.gz", null ], "homepages": [ "https://www.r-project.org/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-consrank", "patches": [], "summary": "Compute the median ranking according to the Kemeny's axiomatic approach.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ConsRank_2.1.4.tar.gz" ], "version": "2.1.4" } ] }, "r-construct": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-bh", "r-caroline", "r-doparallel", "r-foreach", "r-gtools", "r-rcpp", "r-rcppeigen", "r-rcppparallel", "r-rstan", "r-rstantools", "r-stanheaders" ], "downloads": [ "https://cloud.r-project.org/src/contrib/conStruct_1.0.6.tar.gz", "https://cloud.r-project.org/src/contrib/conStruct_1.0.5.tar.gz", "https://cloud.r-project.org/src/contrib/conStruct_1.0.4.tar.gz", "https://cloud.r-project.org/src/contrib/conStruct_1.0.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=conStruct" ], "licenses": [], "maintainers": [], "name": "r-construct", "patches": [], "summary": "Models Spatially Continuous and Discrete Population GeneticStructure. A\nmethod for modeling genetic data as a combination of discrete layers,\nwithin each of which relatedness may decay continuously with geographic\ndistance. This package contains code for running analyses (which are\nimplemented in the modeling language 'rstan') and visualizing and\ninterpreting output. See the paper for more details on the model and its\nutility.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/conStruct_1.0.3.tar.gz" ], "version": "1.0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/conStruct_1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/conStruct_1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/conStruct_1.0.6.tar.gz" ], "version": "1.0.6" } ] }, "r-convevol": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ape", "r-cluster", "r-geiger", "r-magick", "r-mass", "r-phytools" ], "downloads": [ "https://cloud.r-project.org/src/contrib/convevol_2.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/convevol_2.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/convevol_1.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=convevol" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-convevol", "patches": [], "summary": "Analysis of Convergent Evolution. Quantifies and assesses the\nsignificance of convergent evolution using two different methods (and 5\ndifferent measures) as described in Stayton (2015)\n. Also displays results in a phylomorphospace\nframework.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/convevol_1.3.tar.gz" ], "version": "1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/convevol_2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/convevol_2.2.1.tar.gz" ], "version": "2.2.1" } ] }, "r-copula": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-adgoftest", "r-colorspace", "r-gsl", "r-lattice", "r-matrix", "r-mvtnorm", "r-numderiv", "r-pcapp", "r-pspline", "r-stabledist" ], "downloads": [ "https://cloud.r-project.org/src/contrib/copula_1.1-4.tar.gz", "https://cloud.r-project.org/src/contrib/copula_1.1-2.tar.gz", "https://cloud.r-project.org/src/contrib/copula_1.1-0.tar.gz", "https://cloud.r-project.org/src/contrib/copula_1.0-1.tar.gz", "https://cloud.r-project.org/src/contrib/copula_0.999-20.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=copula" ], "licenses": [ "GPL-3.0-or-later OR custom" ], "maintainers": [], "name": "r-copula", "patches": [], "summary": "Multivariate Dependence with Copulas. Classes (S4) of commonly used\nelliptical, Archimedean, extreme-value and other copula families, as\nwell as their rotations, mixtures and asymmetrizations. Nested\nArchimedean copulas, related tools and special functions. Methods for\ndensity, distribution, random number generation, bivariate dependence\nmeasures, Rosenblatt transform, Kendall distribution function,\nperspective and contour plots. Fitting of copula models with potentially\npartly fixed parameters, including standard errors. Serial independence\ntests, copula specification tests (independence, exchangeability, radial\nsymmetry, extreme-value dependence, goodness-of-fit) and model selection\nbased on cross-validation. Empirical copula, smoothed versions, and non-\nparametric estimators of the Pickands dependence function.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/copula_0.999-20.tar.gz" ], "version": "0.999-20" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/copula_1.0-1.tar.gz" ], "version": "1.0-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/copula_1.1-0.tar.gz" ], "version": "1.1-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/copula_1.1-2.tar.gz" ], "version": "1.1-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/copula_1.1-4.tar.gz" ], "version": "1.1-4" } ] }, "r-corhmm": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ape", "r-corpcor", "r-expm", "r-gensa", "r-igraph", "r-mass", "r-nloptr", "r-nnet", "r-numderiv", "r-phangorn", "r-phytools", "r-rmpfr", "r-viridis" ], "downloads": [ "https://cloud.r-project.org/src/contrib/corHMM_2.8.tar.gz", "https://cloud.r-project.org/src/contrib/corHMM_2.7.tar.gz", "https://cloud.r-project.org/src/contrib/corHMM_2.6.tar.gz", "https://cloud.r-project.org/src/contrib/corHMM_1.22.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=corHMM" ], "licenses": [], "maintainers": [], "name": "r-corhmm", "patches": [], "summary": "Hidden Markov Models of Character Evolution. Fits hidden Markov models\nof discrete character evolution which allow different transition rate\nclasses on different portions of a phylogeny. Beaulieu et al (2013)\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/corHMM_1.22.tar.gz" ], "version": "1.22" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/corHMM_2.6.tar.gz" ], "version": "2.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/corHMM_2.7.tar.gz" ], "version": "2.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/corHMM_2.8.tar.gz" ], "version": "2.8" } ] }, "r-corpcor": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/corpcor_1.6.10.tar.gz", "https://cloud.r-project.org/src/contrib/corpcor_1.6.9.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=corpcor" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-corpcor", "patches": [], "summary": "Efficient Estimation of Covariance and (Partial) Correlation. Implements\na James-Stein-type shrinkage estimator for the covariance matrix, with\nseparate shrinkage for variances and correlations. The details of the\nmethod are explained in Schafer and Strimmer (2005)\n and Opgen-Rhein and Strimmer (2007)\n. The approach is both computationally as\nwell as statistically very efficient, it is applicable to \"small n,\nlarge p\" data, and always returns a positive definite and well-\nconditioned covariance matrix. In addition to inferring the covariance\nmatrix the package also provides shrinkage estimators for partial\ncorrelations and partial variances. The inverse of the covariance and\ncorrelation matrix can be efficiently computed, as well as any arbitrary\npower of the shrinkage correlation matrix. Furthermore, functions are\navailable for fast singular value decomposition, for computing the\npseudoinverse, and for checking the rank and positive definiteness of a\nmatrix.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/corpcor_1.6.10.tar.gz" ], "version": "1.6.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/corpcor_1.6.9.tar.gz" ], "version": "1.6.9" } ] }, "r-corrplot": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/corrplot_0.94.tar.gz", "https://cloud.r-project.org/src/contrib/corrplot_0.92.tar.gz", "https://cloud.r-project.org/src/contrib/corrplot_0.84.tar.gz", "https://cloud.r-project.org/src/contrib/corrplot_0.77.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=corrplot" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-corrplot", "patches": [], "summary": "Visualization of a Correlation Matrix. Provides a visual exploratory\ntool on correlation matrix that supports automatic variable reordering\nto help detect hidden patterns among variables.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/corrplot_0.77.tar.gz" ], "version": "0.77" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/corrplot_0.84.tar.gz" ], "version": "0.84" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/corrplot_0.92.tar.gz" ], "version": "0.92" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/corrplot_0.94.tar.gz" ], "version": "0.94" } ] }, "r-countrycode": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/countrycode_1.6.0.tar.gz", "https://cloud.r-project.org/src/contrib/countrycode_1.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/countrycode_1.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/countrycode_1.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=countrycode" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-countrycode", "patches": [], "summary": "Convert Country Names and Country Codes. Countrycode standardizes\ncountry names, converts them into ~40 different coding schemes, and\nassigns region descriptors.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/countrycode_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/countrycode_1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/countrycode_1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/countrycode_1.6.0.tar.gz" ], "version": "1.6.0" } ] }, "r-covr": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-crayon", "r-digest", "r-httr", "r-jsonlite", "r-rex", "r-withr", "r-yaml" ], "downloads": [ "https://cloud.r-project.org/src/contrib/covr_3.6.4.tar.gz", "https://cloud.r-project.org/src/contrib/covr_3.6.2.tar.gz", "https://cloud.r-project.org/src/contrib/covr_3.6.1.tar.gz", "https://cloud.r-project.org/src/contrib/covr_3.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/covr_3.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/covr_3.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/covr_3.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/covr_3.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/covr_3.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=covr" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-covr", "patches": [], "summary": "Test Coverage for Packages. Track and report code coverage for your\npackage and (optionally) upload the results to a coverage service like\n'Codecov' or 'Coveralls' .\nCode coverage is a measure of the amount of code being exercised by a\nset of tests. It is an indirect measure of test quality and\ncompleteness. This package is compatible with any testing methodology or\nframework and tracks coverage of both R code and compiled C/C++/FORTRAN\ncode.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/covr_3.0.1.tar.gz" ], "version": "3.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/covr_3.2.0.tar.gz" ], "version": "3.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/covr_3.2.1.tar.gz" ], "version": "3.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/covr_3.3.0.tar.gz" ], "version": "3.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/covr_3.5.0.tar.gz" ], "version": "3.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/covr_3.5.1.tar.gz" ], "version": "3.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/covr_3.6.1.tar.gz" ], "version": "3.6.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/covr_3.6.2.tar.gz" ], "version": "3.6.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/covr_3.6.4.tar.gz" ], "version": "3.6.4" } ] }, "r-cowplot": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ggplot2", "r-gtable", "r-plyr", "r-rlang", "r-scales" ], "downloads": [ "https://cloud.r-project.org/src/contrib/cowplot_1.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/cowplot_1.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/cowplot_1.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/cowplot_0.9.3.tar.gz", "https://cloud.r-project.org/src/contrib/cowplot_0.9.2.tar.gz", "https://cloud.r-project.org/src/contrib/cowplot_0.9.1.tar.gz", "https://cloud.r-project.org/src/contrib/cowplot_0.9.0.tar.gz", "https://cloud.r-project.org/src/contrib/cowplot_0.8.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=cowplot" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-cowplot", "patches": [], "summary": "Streamlined Plot Theme and Plot Annotations for 'ggplot2'. Provides\nvarious features that help with creating publication-quality figures\nwith 'ggplot2', such as a set of themes, functions to align plots and\narrange them into complex compound figures, and functions that make it\neasy to annotate plots and or mix plots with images. The package was\noriginally written for internal use in the Wilke lab, hence the name\n(Claus O. Wilke's plot package). It has also been used extensively in\nthe book Fundamentals of Data Visualization.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/cowplot_0.8.0.tar.gz" ], "version": "0.8.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cowplot_0.9.0.tar.gz" ], "version": "0.9.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cowplot_0.9.1.tar.gz" ], "version": "0.9.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cowplot_0.9.2.tar.gz" ], "version": "0.9.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cowplot_0.9.3.tar.gz" ], "version": "0.9.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cowplot_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cowplot_1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cowplot_1.1.3.tar.gz" ], "version": "1.1.3" } ] }, "r-cpp11": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/cpp11_0.4.7.tar.gz", "https://cloud.r-project.org/src/contrib/cpp11_0.4.3.tar.gz", "https://cloud.r-project.org/src/contrib/cpp11_0.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/cpp11_0.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/cpp11_0.2.5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=cpp11" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-cpp11", "patches": [], "summary": "A C++11 Interface for R's C Interface. Provides a header only, C++11\ninterface to R's C interface. Compared to other approaches 'cpp11'\nstrives to be safe against long jumps from the C API as well as C++\nexceptions, conform to normal R function semantics and supports\ninteraction with 'ALTREP' vectors.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/cpp11_0.2.5.tar.gz" ], "version": "0.2.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cpp11_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cpp11_0.4.2.tar.gz" ], "version": "0.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cpp11_0.4.3.tar.gz" ], "version": "0.4.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cpp11_0.4.7.tar.gz" ], "version": "0.4.7" } ] }, "r-crayon": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/crayon_1.5.3.tar.gz", "https://cloud.r-project.org/src/contrib/crayon_1.5.2.tar.gz", "https://cloud.r-project.org/src/contrib/crayon_1.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/crayon_1.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/crayon_1.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/crayon_1.3.4.tar.gz", "https://cloud.r-project.org/src/contrib/crayon_1.3.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=crayon" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-crayon", "patches": [], "summary": "Colored Terminal Output. Colored terminal output on terminals that\nsupport 'ANSI' color and highlight codes. It also works in 'Emacs'\n'ESS'. 'ANSI' color support is automatically detected. Colors and\nhighlighting can be combined and nested. New styles can also be created\neasily. 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Setup and retrieve HTTPS and\nSSH credentials for use with 'git' and other services. For HTTPS remotes\nthe package interfaces the 'git-credential' utility which 'git' uses to\nstore HTTP usernames and passwords. For SSH remotes we provide\nconvenient functions to find or generate appropriate SSH keys. 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Provides building blocks\nfor allowing HTML widgets to communicate with each other, with Shiny or\nwithout (i.e. static .html files). 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A simple HTTP client, with tools for making HTTP requests,\nand mocking HTTP requests. The package is built on R6, and takes\ninspiration from Ruby's 'faraday' gem\n(). The package name is a play on\ncurl, the widely used command line tool for HTTP, and this package is\nbuilt on top of the R package 'curl', an interface to 'libcurl'\n().\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/crul_0.7.4.tar.gz" ], "version": "0.7.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/crul_0.8.4.tar.gz" ], "version": "0.8.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/crul_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/crul_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/crul_1.3.tar.gz" ], "version": "1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/crul_1.5.0.tar.gz" ], "version": "1.5.0" } ] }, "r-ctc": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-amap" ], "downloads": [ "https://git.bioconductor.org/packages/ctc" ], "homepages": [ "https://bioconductor.org/packages/ctc" ], "licenses": [], "maintainers": [], "name": "r-ctc", "patches": [], "summary": "Cluster and Tree Conversion. 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R wrappers around the\ncubature C library of Steven G. Johnson for adaptive multivariate\nintegration over hypercubes and the Cuba C library of Thomas Hahn for\ndeterministic and Monte Carlo integration. Scalar and vector interfaces\nfor cubature and Cuba routines are provided; the vector interfaces are\nhighly recommended as demonstrated in the package vignette.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/cubature_1.1-2.tar.gz" ], "version": "1.1-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cubature_2.0.2.tar.gz" ], "version": "2.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cubature_2.0.3.tar.gz" ], "version": "2.0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cubature_2.0.4.1.tar.gz" ], "version": "2.0.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cubature_2.0.4.2.tar.gz" ], "version": "2.0.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cubature_2.0.4.4.tar.gz" ], "version": "2.0.4.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cubature_2.0.4.5.tar.gz" ], "version": "2.0.4.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cubature_2.0.4.6.tar.gz" ], "version": "2.0.4.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/cubature_2.1.1.tar.gz" ], "version": "2.1.1" } ] }, "r-cubist": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-lattice", "r-reshape2" ], "downloads": [ "https://cloud.r-project.org/src/contrib/Cubist_0.4.4.tar.gz", "https://cloud.r-project.org/src/contrib/Cubist_0.4.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/Cubist_0.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/Cubist_0.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/Cubist_0.2.3.tar.gz", "https://cloud.r-project.org/src/contrib/Cubist_0.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/Cubist_0.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/Cubist_0.0.19.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=Cubist" ], "licenses": [], "maintainers": [], "name": "r-cubist", "patches": [], "summary": "Rule- And Instance-Based Regression Modeling. Regression modeling using\nrules with added instance-based corrections.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/Cubist_0.0.19.tar.gz" ], "version": "0.0.19" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Cubist_0.2.1.tar.gz" ], "version": "0.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Cubist_0.2.2.tar.gz" ], "version": "0.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Cubist_0.2.3.tar.gz" ], "version": "0.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Cubist_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Cubist_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Cubist_0.4.2.1.tar.gz" ], "version": "0.4.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Cubist_0.4.4.tar.gz" ], "version": "0.4.4" } ] }, "r-curl": { "alias": [], "categories": [], "dependencies": [ "c", "curl", "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/curl_6.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=curl" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-curl", "patches": [], "summary": "A Modern and Flexible Web Client for R. The curl() and curl_download()\nfunctions provide highly configurable drop-in replacements for base\nurl() and download.file() with better performance, support for\nencryption (https, ftps), gzip compression, authentication, and other\nlibcurl goodies. The core of the package implements a framework for\nperforming fully customized requests where data can be processed either\nin memory, on disk, or streaming via the callback or connection\ninterfaces. Some knowledge of libcurl is recommended; for a more-user-\nfriendly web client see the 'httr' package which builds on this package\nwith http specific tools and logic.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/curl_6.2.0.tar.gz" ], "version": "6.2.0" } ] }, "r-cvxr": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-bit64", "r-clarabel", "r-ecosolver", "r-gmp", "r-matrix", "r-osqp", "r-r6", "r-rcpp", "r-rcppeigen", "r-rmpfr", "r-scs" ], "downloads": [ "https://cloud.r-project.org/src/contrib/CVXR_1.0-14.tar.gz", "https://cloud.r-project.org/src/contrib/CVXR_1.0-11.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=CVXR" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "r-cvxr", "patches": [], "summary": "Disciplined Convex Optimization. An object-oriented modeling language\nfor disciplined convex programming (DCP) as described in Fu, Narasimhan,\nand Boyd (2020, ). 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In\nsome cases, this results in misleading visualisations, where the density\nof cells in the low-dimensional embedding does not represent the\ntranscriptional heterogeneity of data in the original high-dimensional\nspace. den-SNE and densMAP aim to enable more accurate visual\ninterpretation of high-dimensional datasets by producing lower-\ndimensional embeddings that accurately represent the heterogeneity of\nthe original high-dimensional space, enabling the identification of\nhomogeneous and heterogeneous cell states. This accuracy is accomplished\nby including in the optimisation process a term which considers the\nlocal density of points in the original high-dimensional space. 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Differential Evolution\n(DE) stochastic algorithms for global optimization of problems with and\nwithout constraints. The aim is to curate a collection of its state-of-\nthe-art variants that (1) do not sacrifice simplicity of design, (2) are\nessentially tuning-free, and (3) can be efficiently implemented directly\nin the R language. Currently, it only provides an implementation of the\n'jDE' algorithm by Brest et al. 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Functions that solve initial value problems of a system\nof first-order ordinary differential equations ('ODE'), of partial\ndifferential equations ('PDE'), of differential algebraic equations\n('DAE'), and of delay differential equations. The functions provide an\ninterface to the FORTRAN functions 'lsoda', 'lsodar', 'lsode', 'lsodes'\nof the 'ODEPACK' collection, to the FORTRAN functions 'dvode', 'zvode'\nand 'daspk' and a C-implementation of solvers of the 'Runge-Kutta'\nfamily with fixed or variable time steps. The package contains routines\ndesigned for solving 'ODEs' resulting from 1-D, 2-D and 3-D partial\ndifferential equations ('PDE') that have been converted to 'ODEs' by\nnumerical differencing.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/deSolve_1.20.tar.gz" ], "version": "1.20" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/deSolve_1.21.tar.gz" ], "version": "1.21" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/deSolve_1.24.tar.gz" ], "version": "1.24" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/deSolve_1.28.tar.gz" ], "version": "1.28" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/deSolve_1.30.tar.gz" ], "version": "1.30" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/deSolve_1.32.tar.gz" ], "version": "1.32" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/deSolve_1.33.tar.gz" ], "version": "1.33" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/deSolve_1.34.tar.gz" ], "version": "1.34" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/deSolve_1.35.tar.gz" ], "version": "1.35" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/deSolve_1.40.tar.gz" ], "version": "1.40" } ] }, "r-devtools": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-callr", "r-cli", "r-covr", "r-crayon", "r-desc", "r-digest", "r-dt", "r-ellipsis", "r-fs", "r-git2r", "r-glue", "r-httr", "r-jsonlite", "r-lifecycle", "r-memoise", "r-miniui", "r-pkgbuild", "r-pkgdown", "r-pkgload", "r-profvis", "r-rcmdcheck", "r-remotes", "r-rlang", "r-roxygen2", "r-rstudioapi", "r-rversions", "r-sessioninfo", "r-testthat", "r-urlchecker", "r-usethis", "r-whisker", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/devtools_2.4.5.tar.gz", "https://cloud.r-project.org/src/contrib/devtools_2.4.4.tar.gz", "https://cloud.r-project.org/src/contrib/devtools_2.4.3.tar.gz", "https://cloud.r-project.org/src/contrib/devtools_2.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/devtools_2.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/devtools_2.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/devtools_2.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/devtools_1.12.0.tar.gz", "https://cloud.r-project.org/src/contrib/devtools_1.11.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=devtools" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-devtools", "patches": [], "summary": "Tools to Make Developing R Packages Easier. Collection of package\ndevelopment tools.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/devtools_1.11.1.tar.gz" ], "version": "1.11.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/devtools_1.12.0.tar.gz" ], "version": "1.12.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/devtools_2.0.2.tar.gz" ], "version": "2.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/devtools_2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/devtools_2.3.0.tar.gz" ], "version": "2.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/devtools_2.3.2.tar.gz" ], "version": "2.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/devtools_2.4.3.tar.gz" ], "version": "2.4.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/devtools_2.4.4.tar.gz" ], "version": "2.4.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/devtools_2.4.5.tar.gz" ], "version": "2.4.5" } ] }, "r-dexseq": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotationdbi", "r-biobase", "r-biocgenerics", "r-biocparallel", "r-biomart", "r-deseq2", "r-genefilter", "r-geneplotter", "r-genomicranges", "r-hwriter", "r-iranges", "r-rcolorbrewer", "r-rsamtools", "r-s4vectors", "r-statmod", "r-stringr", "r-summarizedexperiment" ], "downloads": [ "https://git.bioconductor.org/packages/DEXSeq" ], "homepages": [ "https://bioconductor.org/packages/DEXSeq" ], "licenses": [], "maintainers": [ "dorton21" ], "name": "r-dexseq", "patches": [], "summary": "Inference of differential exon usage in RNA-Seq. The package is focused\non finding differential exon usage using RNA-seq exon counts between\nsamples with different experimental designs. It provides functions that\nallows the user to make the necessary statistical tests based on a model\nthat uses the negative binomial distribution to estimate the variance\nbetween biological replicates and generalized linear models for testing.\nThe package also provides functions for the visualization and\nexploration of the results.\n", "version": [ { "repositories": [ { "commit": "f0a361af6954fcc2abb2db801c26e303570669b2", "type": "git", "url": "https://git.bioconductor.org/packages/DEXSeq" } ], "version": "1.36.0" }, { "repositories": [ { "commit": "7d2d639b3a157e443058fc557132cd2629bb36f3", "type": "git", "url": "https://git.bioconductor.org/packages/DEXSeq" } ], "version": "1.40.0" }, { "repositories": [ { "commit": "d91de62a27d0cab2ef12ef1a5f23dc2f7a0cfadd", "type": "git", "url": "https://git.bioconductor.org/packages/DEXSeq" } ], "version": "1.42.0" }, { "repositories": [ { "commit": "9660d7372d5ced1a7e324ed9a61b935023b7d135", "type": "git", "url": "https://git.bioconductor.org/packages/DEXSeq" } ], "version": "1.44.0" }, { "repositories": [ { "commit": "074c0bf6776eea69e58a788a0f6904dd632a1b74", "type": "git", "url": "https://git.bioconductor.org/packages/DEXSeq" } ], "version": "1.46.0" } ] }, "r-diagram": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-shape" ], "downloads": [ "https://cloud.r-project.org/src/contrib/diagram_1.6.5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=diagram" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-diagram", "patches": [], "summary": "Functions for Visualising Simple Graphs (Networks), Plotting Flow\nDiagrams. Visualises simple graphs (networks) based on a transition\nmatrix, utilities to plot flow diagrams, visualising webs, electrical\nnetworks, etc. Support for the book \"A practical guide to ecological\nmodelling - using R as a simulation platform\" by Karline Soetaert and\nPeter M.J. Herman (2009), Springer. and the book \"Solving Differential\nEquations in R\" by Karline Soetaert, Jeff Cash and Francesca Mazzia\n(2012), Springer. 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Build graph/network structures using\nfunctions for stepwise addition and deletion of nodes and edges. Work\nwith data available in tables for bulk addition of nodes, edges, and\nassociated metadata. Use graph selections and traversals to apply\nchanges to specific nodes or edges. A wide selection of graph algorithms\nallow for the analysis of graphs. Visualize the graphs and take\nadvantage of any aesthetic properties assigned to nodes and edges.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/DiagrammeR_0.8.4.tar.gz" ], "version": "0.8.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/DiagrammeR_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/DiagrammeR_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/DiagrammeR_1.0.11.tar.gz" ], "version": "1.0.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/DiagrammeR_1.0.6.1.tar.gz" ], "version": "1.0.6.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/DiagrammeR_1.0.7.tar.gz" ], "version": "1.0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/DiagrammeR_1.0.8.tar.gz" ], "version": "1.0.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/DiagrammeR_1.0.9.tar.gz" ], "version": "1.0.9" } ] }, "r-dicekriging": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/DiceKriging_1.6.0.tar.gz", "https://cloud.r-project.org/src/contrib/DiceKriging_1.5.8.tar.gz", "https://cloud.r-project.org/src/contrib/DiceKriging_1.5.6.tar.gz", "https://cloud.r-project.org/src/contrib/DiceKriging_1.5.5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=DiceKriging" ], "licenses": [], "maintainers": [], "name": "r-dicekriging", "patches": [], "summary": "Kriging Methods for Computer Experiments. Estimation, validation and\nprediction of kriging models. Important functions: km, print.km,\nplot.km, predict.km.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/DiceKriging_1.5.5.tar.gz" ], "version": "1.5.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/DiceKriging_1.5.6.tar.gz" ], "version": "1.5.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/DiceKriging_1.5.8.tar.gz" ], "version": "1.5.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/DiceKriging_1.6.0.tar.gz" ], "version": "1.6.0" } ] }, "r-dichromat": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/dichromat_2.0-0.1.tar.gz", "https://cloud.r-project.org/src/contrib/dichromat_2.0-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=dichromat" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-dichromat", "patches": [], "summary": "Color Schemes for Dichromats. Collapse red-green or green-blue\ndistinctions to simulate the effects of different types of color-\nblindness.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/dichromat_2.0-0.tar.gz" ], "version": "2.0-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dichromat_2.0-0.1.tar.gz" ], "version": "2.0-0.1" } ] }, "r-diffobj": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-crayon" ], "downloads": [ "https://cloud.r-project.org/src/contrib/diffobj_0.3.5.tar.gz", "https://cloud.r-project.org/src/contrib/diffobj_0.3.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=diffobj" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-diffobj", "patches": [], "summary": "Diffs for R Objects. Generate a colorized diff of two R objects for an\nintuitive visualization of their differences.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/diffobj_0.3.3.tar.gz" ], "version": "0.3.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/diffobj_0.3.5.tar.gz" ], "version": "0.3.5" } ] }, "r-diffusionmap": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-igraph", "r-matrix", "r-scatterplot3d" ], "downloads": [ "https://cloud.r-project.org/src/contrib/diffusionMap_1.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/diffusionMap_1.1-0.1.tar.gz", "https://cloud.r-project.org/src/contrib/diffusionMap_1.1-0.tar.gz", "https://cloud.r-project.org/src/contrib/diffusionMap_1.0-0.tar.gz", "https://cloud.r-project.org/src/contrib/diffusionMap_0.0-2.tar.gz", "https://cloud.r-project.org/src/contrib/diffusionMap_0.0-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=diffusionMap" ], "licenses": [], "maintainers": [], "name": "r-diffusionmap", "patches": [], "summary": "Diffusion Map. Implements diffusion map method of data parametrization,\nincluding creation and visualization of diffusion map, clustering with\ndiffusion K-means and regression using adaptive regression model.\nRichards (2009) .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/diffusionMap_0.0-1.tar.gz" ], "version": "0.0-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/diffusionMap_0.0-2.tar.gz" ], "version": "0.0-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/diffusionMap_1.0-0.tar.gz" ], "version": "1.0-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/diffusionMap_1.1-0.tar.gz" ], "version": "1.1-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/diffusionMap_1.1-0.1.tar.gz" ], "version": "1.1-0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/diffusionMap_1.2.0.tar.gz" ], "version": "1.2.0" } ] }, "r-digest": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/digest_0.6.37.tar.gz", "https://cloud.r-project.org/src/contrib/digest_0.6.31.tar.gz", "https://cloud.r-project.org/src/contrib/digest_0.6.30.tar.gz", "https://cloud.r-project.org/src/contrib/digest_0.6.29.tar.gz", "https://cloud.r-project.org/src/contrib/digest_0.6.28.tar.gz", "https://cloud.r-project.org/src/contrib/digest_0.6.27.tar.gz", "https://cloud.r-project.org/src/contrib/digest_0.6.25.tar.gz", "https://cloud.r-project.org/src/contrib/digest_0.6.20.tar.gz", "https://cloud.r-project.org/src/contrib/digest_0.6.19.tar.gz", "https://cloud.r-project.org/src/contrib/digest_0.6.12.tar.gz", "https://cloud.r-project.org/src/contrib/digest_0.6.11.tar.gz", "https://cloud.r-project.org/src/contrib/digest_0.6.9.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=digest" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-digest", "patches": [], "summary": "Create Compact Hash Digests of R Objects. Implementation of a function\n'digest()' for the creation of hash digests of arbitrary R objects\n(using the md5, sha-1, sha-256, crc32, xxhash and murmurhash algorithms)\npermitting easy comparison of R language objects, as well as a function\n'hmac()' to create hash-based message authentication code. The md5\nalgorithm by Ron Rivest is specified in RFC 1321, the sha-1 and sha-256\nalgorithms are specified in FIPS-180-1 and FIPS-180-2, and the crc32\nalgorithm is described in\nftp://ftp.rocksoft.com/cliens/rocksoft/papers/crc_v3.txt. For md5,\nsha-1, sha-256 and aes, this package uses small standalone\nimplementations that were provided by Christophe Devine. For crc32, code\nfrom the zlib library is used. For sha-512, an implementation by Aaron\nD. Gifford is used. For xxhash, the implementation by Yann Collet is\nused. For murmurhash, an implementation by Shane Day is used. Please\nnote that this package is not meant to be deployed for cryptographic\npurposes for which more comprehensive (and widely tested) libraries such\nas OpenSSL should be used.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/digest_0.6.11.tar.gz" ], "version": "0.6.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/digest_0.6.12.tar.gz" ], "version": "0.6.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/digest_0.6.19.tar.gz" ], "version": "0.6.19" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/digest_0.6.20.tar.gz" ], "version": "0.6.20" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/digest_0.6.25.tar.gz" ], "version": "0.6.25" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/digest_0.6.27.tar.gz" ], "version": "0.6.27" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/digest_0.6.28.tar.gz" ], "version": "0.6.28" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/digest_0.6.29.tar.gz" ], "version": "0.6.29" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/digest_0.6.30.tar.gz" ], "version": "0.6.30" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/digest_0.6.31.tar.gz" ], "version": "0.6.31" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/digest_0.6.37.tar.gz" ], "version": "0.6.37" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/digest_0.6.9.tar.gz" ], "version": "0.6.9" } ] }, "r-diptest": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/diptest_0.77-1.tar.gz", "https://cloud.r-project.org/src/contrib/diptest_0.76-0.tar.gz", "https://cloud.r-project.org/src/contrib/diptest_0.75-7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=diptest" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-diptest", "patches": [], "summary": "Hartigan's Dip Test Statistic for Unimodality - Corrected. 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This package is an interface\nto code originally made available by Holmes, Harris, and Quince, 2012,\nPLoS ONE 7(2): 1-15, as discussed further in the man page for this\npackage, ?DirichletMultinomial.\n", "version": [ { "repositories": [ { "commit": "81ccc8d83b8ef84f5d3e877bc0a04233a0f63c51", "type": "git", "url": "https://git.bioconductor.org/packages/DirichletMultinomial" } ], "version": "1.18.0" }, { "repositories": [ { "commit": "251529f301da1482551142240aeb6baf8dab2272", "type": "git", "url": "https://git.bioconductor.org/packages/DirichletMultinomial" } ], "version": "1.20.0" }, { "repositories": [ { "commit": "5864f4298105d12f345f27df77ad13bae4061ca5", "type": "git", "url": "https://git.bioconductor.org/packages/DirichletMultinomial" } ], "version": "1.22.0" }, { "repositories": [ { "commit": "50195d9b1986852da29100e77f6f09df5d6e2a35", "type": "git", "url": "https://git.bioconductor.org/packages/DirichletMultinomial" } ], "version": "1.24.1" }, { "repositories": [ { "commit": "7daa84948020811bb8a27d2e633fccfdcdd1018f", "type": "git", "url": "https://git.bioconductor.org/packages/DirichletMultinomial" } ], "version": "1.26.0" }, { "repositories": [ { "commit": "6949abab2462b2c09f7a0ca5b5cbf0c95a40ad16", "type": "git", "url": "https://git.bioconductor.org/packages/DirichletMultinomial" } ], "version": "1.32.0" }, { "repositories": [ { "commit": "926baff6c75cb498945c5895f25cc143c907a357", "type": "git", "url": "https://git.bioconductor.org/packages/DirichletMultinomial" } ], "version": "1.36.0" }, { "repositories": [ { "commit": "b4de83d354e974fdb7cb3526d029487f24aab670", "type": "git", "url": "https://git.bioconductor.org/packages/DirichletMultinomial" } ], "version": "1.38.0" }, { "repositories": [ { "commit": "200176f8c72ff127788c500629b71872bc6b1f83", "type": "git", "url": "https://git.bioconductor.org/packages/DirichletMultinomial" } ], "version": "1.40.0" }, { "repositories": [ { "commit": "c388536bed4bdc57724b704edec04b28acbf48db", "type": "git", "url": "https://git.bioconductor.org/packages/DirichletMultinomial" } ], "version": "1.42.0" } ] }, "r-dismo": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "java", "r", "r-raster", "r-rcpp", "r-sp", "r-terra" ], "downloads": [ "https://cloud.r-project.org/src/contrib/dismo_1.3-14.tar.gz", "https://cloud.r-project.org/src/contrib/dismo_1.3-9.tar.gz", "https://cloud.r-project.org/src/contrib/dismo_1.3-5.tar.gz", "https://cloud.r-project.org/src/contrib/dismo_1.3-3.tar.gz", "https://cloud.r-project.org/src/contrib/dismo_1.1-4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=dismo" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-dismo", "patches": [], "summary": "Species Distribution Modeling. 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Vectorised\ndistribution objects with tools for manipulating, visualising, and using\nprobability distributions. Designed to allow model prediction outputs to\nreturn distributions rather than their parameters, allowing users to\ndirectly interact with predictive distributions in a data-oriented\nworkflow. In addition to providing generic replacements for p/d/q/r\nfunctions, other useful statistics can be computed including means,\nvariances, intervals, and highest density regions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/distributional_0.2.2.tar.gz" ], "version": "0.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/distributional_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/distributional_0.3.1.tar.gz" ], "version": "0.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/distributional_0.3.2.tar.gz" ], "version": "0.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/distributional_0.4.0.tar.gz" ], "version": "0.4.0" } ] }, "r-diversitree": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "fftw", "gmake", "gsl", "r", "r-ape", "r-desolve", "r-rcpp", "r-subplex" ], "downloads": [ "https://cloud.r-project.org/src/contrib/diversitree_0.10-0.tar.gz", "https://cloud.r-project.org/src/contrib/diversitree_0.9-16.tar.gz", "https://cloud.r-project.org/src/contrib/diversitree_0.9-15.tar.gz", "https://cloud.r-project.org/src/contrib/diversitree_0.9-11.tar.gz", "https://cloud.r-project.org/src/contrib/diversitree_0.9-10.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=diversitree" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-diversitree", "patches": [], "summary": "Comparative 'Phylogenetic' Analyses of Diversification. Mostly focusing\non analysing diversification and character evolution. Contains\nimplementations of 'BiSSE' (Binary State 'Speciation' and Extinction)\nand its unresolved tree extensions, 'MuSSE' (Multiple State 'Speciation'\nand Extinction), 'QuaSSE', 'GeoSSE', and 'BiSSE-ness' Other included\nmethods include Markov models of discrete and continuous trait evolution\nand constant rate 'speciation' and extinction.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/diversitree_0.10-0.tar.gz" ], "version": "0.10-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/diversitree_0.9-10.tar.gz" ], "version": "0.9-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/diversitree_0.9-11.tar.gz" ], "version": "0.9-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/diversitree_0.9-15.tar.gz" ], "version": "0.9-15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/diversitree_0.9-16.tar.gz" ], "version": "0.9-16" } ] }, "r-dmrcate": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotationhub", "r-biomart", "r-bsseq", "r-dss", "r-edger", "r-experimenthub", "r-genomeinfodb", "r-genomicranges", "r-gviz", "r-iranges", "r-limma", "r-minfi", "r-missmethyl", "r-plyr", "r-s4vectors", "r-summarizedexperiment" ], "downloads": [ "https://git.bioconductor.org/packages/DMRcate" ], "homepages": [ "https://bioconductor.org/packages/DMRcate" ], "licenses": [], "maintainers": [], "name": "r-dmrcate", "patches": [], "summary": "Methylation array and sequencing spatial analysis methods. De novo\nidentification and extraction of differentially methylated regions\n(DMRs) from the human genome using Whole Genome Bisulfite Sequencing\n(WGBS) and Illumina Infinium Array (450K and EPIC) data. Provides\nfunctionality for filtering probes possibly confounded by SNPs and\ncross-hybridisation. Includes GRanges generation and plotting functions.\n", "version": [ { "repositories": [ { "commit": "81e83701da5c55ac83d0e0b5e640a9d431f09551", "type": "git", "url": "https://git.bioconductor.org/packages/DMRcate" } ], "version": "2.10.0" }, { "repositories": [ { "commit": "560dd5067b05715631739d0fb58ef9cebdbf7078", "type": "git", "url": "https://git.bioconductor.org/packages/DMRcate" } ], "version": "2.12.0" }, { "repositories": [ { "commit": "6e7bae0917001e7664f01c3f8d261f9fe28c2f4d", "type": "git", "url": "https://git.bioconductor.org/packages/DMRcate" } ], "version": "2.14.0" }, { "repositories": [ { "commit": "9e42d8c8eb26dbd2d36a70bf32be322062ecc850", "type": "git", "url": "https://git.bioconductor.org/packages/DMRcate" } ], "version": "2.16.0" }, { "repositories": [ { "commit": "bc6242a0291a9b997872f575a4417d38550c9550", "type": "git", "url": "https://git.bioconductor.org/packages/DMRcate" } ], "version": "2.4.1" }, { "repositories": [ { "commit": "c65dc79a33a047c10932a98b3383709a6bcb8903", "type": "git", "url": "https://git.bioconductor.org/packages/DMRcate" } ], "version": "2.8.5" }, { "repositories": [ { "commit": "9cd77dedef76528990487b931ae0cc314423c3b9", "type": "git", "url": "https://git.bioconductor.org/packages/DMRcate" } ], "version": "3.0.0" }, { "repositories": [ { "commit": "1f46517bcdea269a2c9726d1156495d6dd172067", "type": "git", "url": "https://git.bioconductor.org/packages/DMRcate" } ], "version": "3.2.0" } ] }, "r-dnacopy": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://git.bioconductor.org/packages/DNAcopy" ], "homepages": [ "https://bioconductor.org/packages/DNAcopy" ], "licenses": [], "maintainers": [], "name": "r-dnacopy", "patches": [], "summary": "DNA copy number data analysis. Implements the circular binary\nsegmentation (CBS) algorithm to segment DNA copy number data and\nidentify genomic regions with abnormal copy number.\n", "version": [ { "repositories": [ { "commit": "a20153029e28c009df813dbaf13d9f519fafa4e8", "type": "git", "url": "https://git.bioconductor.org/packages/DNAcopy" } ], "version": "1.50.1" }, { "repositories": [ { "commit": "2632fbecec4cef3705b85676942a59188ae9bba4", "type": "git", "url": "https://git.bioconductor.org/packages/DNAcopy" } ], "version": "1.52.0" }, { "repositories": [ { "commit": "fe2657936afbce8ee03221461dff4265e3ded4c4", "type": "git", "url": "https://git.bioconductor.org/packages/DNAcopy" } ], "version": "1.54.0" }, { "repositories": [ { "commit": "e521826f2515b309921272f65db421cbe2ff961a", "type": "git", "url": "https://git.bioconductor.org/packages/DNAcopy" } ], "version": "1.56.0" }, { "repositories": [ { "commit": "1954745eafca990d6ddeefe84059c54a8c37df23", "type": "git", "url": "https://git.bioconductor.org/packages/DNAcopy" } ], "version": "1.58.0" }, { "repositories": [ { "commit": "01650266ea7a4e5c600de545fe70a1103e79b2d8", "type": "git", "url": "https://git.bioconductor.org/packages/DNAcopy" } ], "version": "1.64.0" }, { "repositories": [ { "commit": "08f039f58bc2f5ed2cc3117ae817dbac333002a6", "type": "git", "url": "https://git.bioconductor.org/packages/DNAcopy" } ], "version": "1.68.0" }, { "repositories": [ { "commit": "9595d0ad7c78af4ed568cbd210b894d3350eae0a", "type": "git", "url": "https://git.bioconductor.org/packages/DNAcopy" } ], "version": "1.70.0" }, { "repositories": [ { "commit": "1a1ae854c3425aee68b060e3e7ab788db5bed08c", "type": "git", "url": "https://git.bioconductor.org/packages/DNAcopy" } ], "version": "1.72.0" }, { "repositories": [ { "commit": "7d22a81570c0fe76f4b5a5c25d0b8fd3696ec70e", "type": "git", "url": "https://git.bioconductor.org/packages/DNAcopy" } ], "version": "1.74.0" } ] }, "r-do-db": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotationdbi" ], "downloads": [ "https://www.bioconductor.org/packages/3.5/data/annotation/src/contrib/DO.db_2.9.tar.gz", "https://git.bioconductor.org/packages/DO.db" ], "homepages": [ "https://bioconductor.org/packages/DO.db" ], "licenses": [], "maintainers": [], "name": "r-do-db", "patches": [], "summary": "A set of annotation maps describing the entire Disease Ontology. A set\nof annotation maps describing the entire Disease Ontology assembled\nusing data from DO.\n", "version": [ { "downloads": [ "https://www.bioconductor.org/packages/3.5/data/annotation/src/contrib/DO.db_2.9.tar.gz" ], "version": "2.9" } ] }, "r-doby": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-boot", "r-broom", "r-cowplot", "r-deriv", "r-dplyr", "r-ggplot2", "r-magrittr", "r-mass", "r-matrix", "r-microbenchmark", "r-modelr", "r-pbkrtest", "r-rlang", "r-tibble", "r-tidyr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/doBy_4.6.22.tar.gz", "https://cloud.r-project.org/src/contrib/doBy_4.6.16.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=doBy" ], "licenses": [], "maintainers": [], "name": "r-doby", "patches": [], "summary": "Groupwise Statistics, LSmeans, Linear Estimates, Utilities. Utility\npackage containing: 1) Facilities for working with grouped data: 'do'\nsomething to data stratified 'by' some variables. 2) LSmeans (least-\nsquares means), general linear estimates. 3) Restrict functions to a\nsmaller domain. 4) Miscellaneous other utilities.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/doBy_4.6.16.tar.gz" ], "version": "4.6.16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/doBy_4.6.22.tar.gz" ], "version": "4.6.22" } ] }, "r-domc": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-foreach", "r-iterators" ], "downloads": [ "https://cloud.r-project.org/src/contrib/doMC_1.3.8.tar.gz", "https://cloud.r-project.org/src/contrib/doMC_1.3.7.tar.gz", "https://cloud.r-project.org/src/contrib/doMC_1.3.6.tar.gz", "https://cloud.r-project.org/src/contrib/doMC_1.3.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=doMC" ], "licenses": [], "maintainers": [], "name": "r-domc", "patches": [], "summary": "Foreach Parallel Adaptor for 'parallel'. Provides a parallel backend for\nthe %dopar% function using the multicore functionality of the parallel\npackage.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/doMC_1.3.4.tar.gz" ], "version": "1.3.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/doMC_1.3.6.tar.gz" ], "version": "1.3.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/doMC_1.3.7.tar.gz" ], "version": "1.3.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/doMC_1.3.8.tar.gz" ], "version": "1.3.8" } ] }, "r-doparallel": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-foreach", "r-iterators" ], "downloads": [ "https://cloud.r-project.org/src/contrib/doParallel_1.0.17.tar.gz", "https://cloud.r-project.org/src/contrib/doParallel_1.0.16.tar.gz", "https://cloud.r-project.org/src/contrib/doParallel_1.0.15.tar.gz", "https://cloud.r-project.org/src/contrib/doParallel_1.0.11.tar.gz", "https://cloud.r-project.org/src/contrib/doParallel_1.0.10.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=doParallel" ], "licenses": [], "maintainers": [], "name": "r-doparallel", "patches": [], "summary": "Foreach Parallel Adaptor for the 'parallel' Package. Provides a parallel\nbackend for the %dopar% function using the parallel package.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/doParallel_1.0.10.tar.gz" ], "version": "1.0.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/doParallel_1.0.11.tar.gz" ], "version": "1.0.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/doParallel_1.0.15.tar.gz" ], "version": "1.0.15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/doParallel_1.0.16.tar.gz" ], "version": "1.0.16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/doParallel_1.0.17.tar.gz" ], "version": "1.0.17" } ] }, "r-dorng": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-foreach", "r-iterators", "r-pkgmaker", "r-rngtools" ], "downloads": [ "https://cloud.r-project.org/src/contrib/doRNG_1.8.6.tar.gz", "https://cloud.r-project.org/src/contrib/doRNG_1.8.2.tar.gz", "https://cloud.r-project.org/src/contrib/doRNG_1.7.1.tar.gz", "https://cloud.r-project.org/src/contrib/doRNG_1.6.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=doRNG" ], "licenses": [], "maintainers": [], "name": "r-dorng", "patches": [], "summary": "Generic Reproducible Parallel Backend for 'foreach' Loops. Provides\nfunctions to perform reproducible parallel foreach loops, using\nindependent random streams as generated by L'Ecuyer's combined multiple-\nrecursive generator (L'Ecuyer (1999), ). It\nenables to easily convert standard %dopar% loops into fully reproducible\nloops, independently of the number of workers, the task scheduling\nstrategy, or the chosen parallel environment and associated foreach\nbackend.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/doRNG_1.6.6.tar.gz" ], "version": "1.6.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/doRNG_1.7.1.tar.gz" ], "version": "1.7.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/doRNG_1.8.2.tar.gz" ], "version": "1.8.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/doRNG_1.8.6.tar.gz" ], "version": "1.8.6" } ] }, "r-dose": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotationdbi", "r-biocparallel", "r-do-db", "r-fgsea", "r-ggplot2", "r-gosemsim", "r-hdo-db", "r-igraph", "r-qvalue", "r-reshape2", "r-rvcheck", "r-s4vectors", "r-scales" ], "downloads": [ "https://git.bioconductor.org/packages/DOSE" ], "homepages": [ "https://bioconductor.org/packages/DOSE" ], "licenses": [], "maintainers": [], "name": "r-dose", "patches": [], "summary": "Disease Ontology Semantic and Enrichment analysis. This package\nimplements five methods proposed by Resnik, Schlicker, Jiang, Lin and\nWang respectively for measuring semantic similarities among DO terms and\ngene products. Enrichment analyses including hypergeometric model and\ngene set enrichment analysis are also implemented for discovering\ndisease associations of high-throughput biological data.\n", "version": [ { "repositories": [ { "commit": "5ea51a2e2a04b4f3cc974cecb4537e14efd6a7e3", "type": "git", "url": "https://git.bioconductor.org/packages/DOSE" } ], "version": "3.10.2" }, { "repositories": [ { "commit": "a534a4f2ef1e54e8b92079cf1bbedb5042fd90cd", "type": "git", "url": "https://git.bioconductor.org/packages/DOSE" } ], "version": "3.16.0" }, { "repositories": [ { "commit": "71f563fc39d02dfdf65184c94e0890a63b96b86b", "type": "git", "url": "https://git.bioconductor.org/packages/DOSE" } ], "version": "3.2.0" }, { "repositories": [ { "commit": "bf434f24d035217822cb1b0ab08a486b9a53edb4", "type": "git", "url": "https://git.bioconductor.org/packages/DOSE" } ], "version": "3.20.1" }, { "repositories": [ { "commit": "242ac1b746c44fbbf281fbe6e5e4424a8dc74375", "type": "git", "url": "https://git.bioconductor.org/packages/DOSE" } ], "version": "3.22.0" }, { "repositories": [ { "commit": "6b711a0f076a9fefcb00ddef66e8f198039e6dfa", "type": "git", "url": "https://git.bioconductor.org/packages/DOSE" } ], "version": "3.22.1" }, { "repositories": [ { "commit": "a78995d3b12bd4baabb69c497102687814cd4c68", "type": "git", "url": "https://git.bioconductor.org/packages/DOSE" } ], "version": "3.24.1" }, { "repositories": [ { "commit": "9c91fb45a2ab9a875a6a7259610b7d5bc86933f6", "type": "git", "url": "https://git.bioconductor.org/packages/DOSE" } ], "version": "3.26.0" }, { "repositories": [ { "commit": "dabb70de1a0f91d1767601e871f2f1c16d29a612", "type": "git", "url": "https://git.bioconductor.org/packages/DOSE" } ], "version": "3.4.0" }, { "repositories": [ { "commit": "f2967f0482cea39222bfd15767d0f4a5994f241b", "type": "git", "url": "https://git.bioconductor.org/packages/DOSE" } ], "version": "3.6.1" }, { "repositories": [ { "commit": "4d3d1ca710aa7e4288a412c8d52b054b86a57639", "type": "git", "url": "https://git.bioconductor.org/packages/DOSE" } ], "version": "3.8.2" } ] }, "r-dosnow": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-foreach", "r-iterators", "r-snow" ], "downloads": [ "https://cloud.r-project.org/src/contrib/doSNOW_1.0.20.tar.gz", "https://cloud.r-project.org/src/contrib/doSNOW_1.0.19.tar.gz", "https://cloud.r-project.org/src/contrib/doSNOW_1.0.18.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=doSNOW" ], "licenses": [], "maintainers": [], "name": "r-dosnow", "patches": [], "summary": "Foreach Parallel Adaptor for the 'snow' Package. Provides a parallel\nbackend for the %dopar% function using the snow package of Tierney,\nRossini, Li, and Sevcikova.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/doSNOW_1.0.18.tar.gz" ], "version": "1.0.18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/doSNOW_1.0.19.tar.gz" ], "version": "1.0.19" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/doSNOW_1.0.20.tar.gz" ], "version": "1.0.20" } ] }, "r-dotcall64": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/dotCall64_1.1-1.tar.gz", "https://cloud.r-project.org/src/contrib/dotCall64_1.0-2.tar.gz", "https://cloud.r-project.org/src/contrib/dotCall64_1.0-1.tar.gz", "https://cloud.r-project.org/src/contrib/dotCall64_1.0-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=dotCall64" ], "licenses": [], "maintainers": [], "name": "r-dotcall64", "patches": [], "summary": "Enhanced Foreign Function Interface Supporting Long Vectors. Provides\n.C64(), which is an enhanced version of .C() and .Fortran() from the\nforeign function interface. .C64() supports long vectors, arguments of\ntype 64-bit integer, and provides a mechanism to avoid unnecessary\ncopies of read-only and write-only arguments. This makes it a convenient\nand fast interface to C/C++ and Fortran code.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/dotCall64_1.0-0.tar.gz" ], "version": "1.0-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dotCall64_1.0-1.tar.gz" ], "version": "1.0-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dotCall64_1.0-2.tar.gz" ], "version": "1.0-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dotCall64_1.1-1.tar.gz" ], "version": "1.1-1" } ] }, "r-downlit": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-brio", "r-desc", "r-digest", "r-evaluate", "r-fansi", "r-memoise", "r-rlang", "r-vctrs", "r-withr", "r-yaml" ], "downloads": [ "https://cloud.r-project.org/src/contrib/downlit_0.4.4.tar.gz", "https://cloud.r-project.org/src/contrib/downlit_0.4.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=downlit" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-downlit", "patches": [], "summary": "Syntax Highlighting and Automatic Linking. Syntax highlighting of R\ncode, specifically designed for the needs of 'RMarkdown' packages like\n'pkgdown', 'hugodown', and 'bookdown'. It includes linking of function\ncalls to their documentation on the web, and automatic translation of\nANSI escapes in output to the equivalent HTML.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/downlit_0.4.2.tar.gz" ], "version": "0.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/downlit_0.4.4.tar.gz" ], "version": "0.4.4" } ] }, "r-downloader": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-digest" ], "downloads": [ "https://cloud.r-project.org/src/contrib/downloader_0.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=downloader" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-downloader", "patches": [], "summary": "Download Files over HTTP and HTTPS. Provides a wrapper for the\ndownload.file function, making it possible to download files over HTTPS\non Windows, Mac OS X, and other Unix-like platforms. The 'RCurl' package\nprovides this functionality (and much more) but can be difficult to\ninstall because it must be compiled with external dependencies. This\npackage has no external dependencies, so it is much easier to install.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/downloader_0.4.tar.gz" ], "version": "0.4" } ] }, "r-dplyr": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-assertthat", "r-bh", "r-bindrcpp", "r-cli", "r-ellipsis", "r-generics", "r-glue", "r-lifecycle", "r-magrittr", "r-pillar", "r-pkgconfig", "r-plogr", "r-r6", "r-rcpp", "r-rlang", "r-tibble", "r-tidyselect", "r-vctrs" ], "downloads": [ "https://cloud.r-project.org/src/contrib/dplyr_1.1.4.tar.gz", "https://cloud.r-project.org/src/contrib/dplyr_1.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/dplyr_1.0.10.tar.gz", "https://cloud.r-project.org/src/contrib/dplyr_1.0.9.tar.gz", "https://cloud.r-project.org/src/contrib/dplyr_1.0.7.tar.gz", "https://cloud.r-project.org/src/contrib/dplyr_1.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/dplyr_0.8.3.tar.gz", "https://cloud.r-project.org/src/contrib/dplyr_0.8.2.tar.gz", "https://cloud.r-project.org/src/contrib/dplyr_0.7.7.tar.gz", "https://cloud.r-project.org/src/contrib/dplyr_0.7.6.tar.gz", "https://cloud.r-project.org/src/contrib/dplyr_0.7.5.tar.gz", "https://cloud.r-project.org/src/contrib/dplyr_0.7.4.tar.gz", "https://cloud.r-project.org/src/contrib/dplyr_0.7.3.tar.gz", "https://cloud.r-project.org/src/contrib/dplyr_0.7.2.tar.gz", "https://cloud.r-project.org/src/contrib/dplyr_0.7.1.tar.gz", "https://cloud.r-project.org/src/contrib/dplyr_0.7.0.tar.gz", "https://cloud.r-project.org/src/contrib/dplyr_0.5.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=dplyr" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-dplyr", "patches": [], "summary": "A Grammar of Data Manipulation. A fast, consistent tool for working with\ndata frame like objects, both in memory and out of memory.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/dplyr_0.5.0.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dplyr_0.7.0.tar.gz" ], "version": "0.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dplyr_0.7.1.tar.gz" ], "version": "0.7.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dplyr_0.7.2.tar.gz" ], "version": "0.7.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dplyr_0.7.3.tar.gz" ], "version": "0.7.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dplyr_0.7.4.tar.gz" ], "version": "0.7.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dplyr_0.7.5.tar.gz" ], "version": "0.7.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dplyr_0.7.6.tar.gz" ], "version": "0.7.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dplyr_0.7.7.tar.gz" ], "version": "0.7.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dplyr_0.8.2.tar.gz" ], "version": "0.8.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dplyr_0.8.3.tar.gz" ], "version": "0.8.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dplyr_1.0.10.tar.gz" ], "version": "1.0.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dplyr_1.0.3.tar.gz" ], "version": "1.0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dplyr_1.0.7.tar.gz" ], "version": "1.0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dplyr_1.0.9.tar.gz" ], "version": "1.0.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dplyr_1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dplyr_1.1.4.tar.gz" ], "version": "1.1.4" } ] }, "r-dqrng": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-bh", "r-rcpp", "r-sitmo" ], "downloads": [ "https://cloud.r-project.org/src/contrib/dqrng_0.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/dqrng_0.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/dqrng_0.2.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=dqrng" ], "licenses": [ "AGPL-3.0-only OR custom" ], "maintainers": [], "name": "r-dqrng", "patches": [], "summary": "Fast Pseudo Random Number Generators. Several fast random number\ngenerators are provided as C++ header only libraries: The PCG family by\nO'Neill (2014 ) as well\nas Xoroshiro128+ and Xoshiro256+ by Blackman and Vigna (2018\n). In addition fast functions for generating random\nnumbers according to a uniform, normal and exponential distribution are\nincluded. The latter two use the Ziggurat algorithm originally proposed\nby Marsaglia and Tsang (2000, ). These\nfunctions are exported to R and as a C++ interface and are enabled for\nuse with the default 64 bit generator from the PCG family, Xoroshiro128+\nand Xoshiro256+ as well as the 64 bit version of the 20 rounds Threefry\nengine (Salmon et al., 2011 ) as provided\nby the package 'sitmo'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/dqrng_0.2.1.tar.gz" ], "version": "0.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dqrng_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/dqrng_0.4.1.tar.gz" ], "version": "0.4.1" } ] }, "r-dss": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-biobase", "r-biocparallel", "r-bsseq", "r-delayedarray", "r-matrixstats" ], "downloads": [ "https://git.bioconductor.org/packages/DSS" ], "homepages": [ "https://bioconductor.org/packages/DSS" ], "licenses": [], "maintainers": [], "name": "r-dss", "patches": [], "summary": "Dispersion shrinkage for sequencing data. DSS is an R library performing\ndifferntial analysis for count-based sequencing data. It detectes\ndifferentially expressed genes (DEGs) from RNA-seq, and differentially\nmethylated loci or regions (DML/DMRs) from bisulfite sequencing (BS-\nseq). The core of DSS is a new dispersion shrinkage method for\nestimating the dispersion parameter from Gamma-Poisson or Beta-Binomial\ndistributions.\n", "version": [ { "repositories": [ { "commit": "ffb502d20810a873c2376199d44adedf7c83912d", "type": "git", "url": "https://git.bioconductor.org/packages/DSS" } ], "version": "2.32.0" }, { "repositories": [ { "commit": "f9819c7d7927c8e6d9963632cdeab36c8c22caa8", "type": "git", "url": "https://git.bioconductor.org/packages/DSS" } ], "version": "2.34.0" }, { "repositories": [ { "commit": "841c7ed72a138a458ee2df52336050dbe581e727", "type": "git", "url": "https://git.bioconductor.org/packages/DSS" } ], "version": "2.36.0" }, { "repositories": [ { "commit": "82e65b92e6e227f1f99620362db8b03059e07e98", "type": "git", "url": "https://git.bioconductor.org/packages/DSS" } ], "version": "2.38.0" }, { "repositories": [ { "commit": "33e87450fbb64bb3e321688ff613e83cd40efe48", "type": "git", "url": "https://git.bioconductor.org/packages/DSS" } ], "version": "2.42.0" }, { "repositories": [ { "commit": "b9f44106f139c93564dfb4afab50555d24a657ba", "type": "git", "url": "https://git.bioconductor.org/packages/DSS" } ], "version": "2.44.0" }, { "repositories": [ { "commit": "debfbac4bc741961ba57915d4f2d98534f02cc21", "type": "git", "url": "https://git.bioconductor.org/packages/DSS" } ], "version": "2.46.0" }, { "repositories": [ { "commit": "03ceee2656e57b717e4fd7f22ff389f118421ae1", "type": "git", "url": "https://git.bioconductor.org/packages/DSS" } ], "version": "2.48.0" } ] }, "r-dt": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-crosstalk", "r-htmltools", "r-htmlwidgets", "r-httpuv", "r-jquerylib", "r-jsonlite", "r-magrittr", "r-promises" ], "downloads": [ "https://cloud.r-project.org/src/contrib/DT_0.33.tar.gz", "https://cloud.r-project.org/src/contrib/DT_0.27.tar.gz", "https://cloud.r-project.org/src/contrib/DT_0.26.tar.gz", "https://cloud.r-project.org/src/contrib/DT_0.25.tar.gz", "https://cloud.r-project.org/src/contrib/DT_0.23.tar.gz", "https://cloud.r-project.org/src/contrib/DT_0.20.tar.gz", "https://cloud.r-project.org/src/contrib/DT_0.17.tar.gz", "https://cloud.r-project.org/src/contrib/DT_0.13.tar.gz", "https://cloud.r-project.org/src/contrib/DT_0.8.tar.gz", "https://cloud.r-project.org/src/contrib/DT_0.7.tar.gz", "https://cloud.r-project.org/src/contrib/DT_0.6.tar.gz", "https://cloud.r-project.org/src/contrib/DT_0.4.tar.gz", "https://cloud.r-project.org/src/contrib/DT_0.3.tar.gz", "https://cloud.r-project.org/src/contrib/DT_0.2.tar.gz", "https://cloud.r-project.org/src/contrib/DT_0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=DT" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "r-dt", "patches": [], "summary": "A Wrapper of the JavaScript Library 'DataTables'. Data objects in R can\nbe rendered as HTML tables using the JavaScript library 'DataTables'\n(typically via R Markdown or Shiny). The 'DataTables' library has been\nincluded in this R package. 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Provides a data.table backend for\n'dplyr'. 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A comprehensive implementation of\ndynamic time warping (DTW) algorithms in R. DTW computes the optimal\n(least cumulative distance) alignment between points of two time series.\nCommon DTW variants covered include local (slope) and global (window)\nconstraints, subsequence matches, arbitrary distance definitions,\nnormalizations, minimum variance matching, and so on. 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An R\ninterface to the 'dygraphs' JavaScript charting library (a copy of which\nis included in the package). 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Functions for latent class analysis, short\ntime Fourier transform, fuzzy clustering, support vector machines,\nshortest path computation, bagged clustering, naive Bayes classifier,\ngeneralized k-nearest neighbour ...\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/e1071_1.6-7.tar.gz" ], "version": "1.6-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/e1071_1.7-1.tar.gz" ], "version": "1.7-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/e1071_1.7-11.tar.gz" ], "version": "1.7-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/e1071_1.7-12.tar.gz" ], "version": "1.7-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/e1071_1.7-13.tar.gz" ], "version": "1.7-13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/e1071_1.7-14.tar.gz" ], "version": "1.7-14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/e1071_1.7-2.tar.gz" ], "version": "1.7-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/e1071_1.7-4.tar.gz" ], "version": "1.7-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/e1071_1.7-9.tar.gz" ], "version": "1.7-9" } ] }, "r-earth": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-formula", "r-plotmo", "r-teachingdemos" ], "downloads": [ "https://cloud.r-project.org/src/contrib/earth_5.3.3.tar.gz", "https://cloud.r-project.org/src/contrib/earth_5.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/earth_5.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/earth_5.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/earth_5.1.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=earth" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-earth", "patches": [], "summary": "Multivariate Adaptive Regression Splines. Build regression models using\nthe techniques in Friedman's papers \"Fast MARS\" and \"Multivariate\nAdaptive Regression Splines\" .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/earth_5.1.2.tar.gz" ], "version": "5.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/earth_5.3.0.tar.gz" ], "version": "5.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/earth_5.3.1.tar.gz" ], "version": "5.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/earth_5.3.2.tar.gz" ], "version": "5.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/earth_5.3.3.tar.gz" ], "version": "5.3.3" } ] }, "r-ebseq": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-bh", "r-blockmodeling", "r-gplots", "r-rcpp", "r-rcppeigen", "r-testthat" ], "downloads": [ "https://git.bioconductor.org/packages/EBSeq" ], "homepages": [ "https://bioconductor.org/packages/EBSeq" ], "licenses": [], "maintainers": [ "pabloaledo" ], "name": "r-ebseq", "patches": [], "summary": "An R package for gene and isoform differential expression analysis of\nRNA-seq data. R/EBSeq is an R package for identifying genes and isoforms\ndifferentially expressed (DE) across two or more biological conditions\nin an RNA-seq experiment. Details can be found in Leng et al., 2013. It\nprovides the syntax required for identifying DE genes and isoforms in a\ntwo-group RNA-seq experiment as well for identifying DE genes across\nmore than two conditions (the commands for identifying DE isoforms\nacross more than two conditions are the same as those required for gene-\nlevel analysis).\n", "version": [ { "repositories": [ { "commit": "7d1d2a2b4ea0df8cddfb5e57d6431f3948c5c4ca", "type": "git", "url": "https://git.bioconductor.org/packages/EBSeq" } ], "version": "1.40.0" }, { "repositories": [ { "commit": "f1d4e4419988ab98540739c9349559fd437cb59f", "type": "git", "url": "https://git.bioconductor.org/packages/EBSeq" } ], "version": "2.0.0" } ] }, "r-ecosolver": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ECOSolveR_0.5.5.tar.gz", "https://cloud.r-project.org/src/contrib/ECOSolveR_0.5.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ECOSolveR" ], "licenses": [], "maintainers": [], "name": "r-ecosolver", "patches": [], "summary": "Embedded Conic Solver in R. R interface to the Embedded COnic Solver\n(ECOS), an efficient and robust C library for convex problems. Conic and\nequality constraints can be specified in addition to integer and boolean\nvariable constraints for mixed-integer problems. This R interface is\ninspired by the python interface and has similar calling conventions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ECOSolveR_0.5.4.tar.gz" ], "version": "0.5.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ECOSolveR_0.5.5.tar.gz" ], "version": "0.5.5" } ] }, "r-ecp": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ecp_3.1.5.tar.gz", "https://cloud.r-project.org/src/contrib/ecp_3.1.4.tar.gz", "https://cloud.r-project.org/src/contrib/ecp_3.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/ecp_3.1.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ecp" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-ecp", "patches": [], "summary": "Non-Parametric Multiple Change-Point Analysis of MultivariateData.\nImplements various procedures for finding multiple change-points from\nMatteson D. et al (2013) , Zhang W. et\nal (2017) , Arlot S. et al (2019). Two\nmethods make use of dynamic programming and pruning, with no\ndistributional assumptions other than the existence of certain absolute\nmoments in one method. Hierarchical and exact search methods are\nincluded. All methods return the set of estimated change-points as well\nas other summary information.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ecp_3.1.1.tar.gz" ], "version": "3.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ecp_3.1.3.tar.gz" ], "version": "3.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ecp_3.1.4.tar.gz" ], "version": "3.1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ecp_3.1.5.tar.gz" ], "version": "3.1.5" } ] }, "r-edger": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-limma", "r-locfit", "r-rcpp" ], "downloads": [ "https://git.bioconductor.org/packages/edgeR" ], "homepages": [ "https://bioconductor.org/packages/edgeR" ], "licenses": [], "maintainers": [], "name": "r-edger", "patches": [], "summary": "Empirical Analysis of Digital Gene Expression Data in R. Differential\nexpression analysis of RNA-seq expression profiles with biological\nreplication. Implements a range of statistical methodology based on the\nnegative binomial distributions, including empirical Bayes estimation,\nexact tests, generalized linear models and quasi-likelihood tests. As\nwell as RNA-seq, it be applied to differential signal analysis of other\ntypes of genomic data that produce counts, including ChIP-seq,\nBisulfite-seq, SAGE and CAGE.\n", "version": [ { "repositories": [ { "commit": "101106f3fdd9e2c45d4a670c88f64c12e97a0495", "type": "git", "url": "https://git.bioconductor.org/packages/edgeR" } ], "version": "3.18.1" }, { "repositories": [ { "commit": "acbcbbee939f399673678653678cd9cb4917c4dc", "type": "git", "url": "https://git.bioconductor.org/packages/edgeR" } ], "version": "3.20.9" }, { "repositories": [ { "commit": "44461aa0412ef4a0d955730f365e44fc64fe1902", "type": "git", "url": "https://git.bioconductor.org/packages/edgeR" } ], "version": "3.22.5" }, { "repositories": [ { "commit": "d1260a2aeba67b9ab7a9b8b197b746814ad0716d", "type": "git", "url": "https://git.bioconductor.org/packages/edgeR" } ], "version": "3.24.3" }, { "repositories": [ { "commit": "836809e043535f2264e5db8b5c0eabcffe85613f", "type": "git", "url": "https://git.bioconductor.org/packages/edgeR" } ], "version": "3.26.8" }, { "repositories": [ { "commit": "b881d801d60e5b38413d27f149384c218621c55a", "type": "git", "url": "https://git.bioconductor.org/packages/edgeR" } ], "version": "3.32.1" }, { "repositories": [ { "commit": "c7db03addfc42138a1901834409c02da9d873026", "type": "git", "url": "https://git.bioconductor.org/packages/edgeR" } ], "version": "3.36.0" }, { "repositories": [ { "commit": "e58bf52f34ec451096f593126922ad7e5d517f7e", "type": "git", "url": "https://git.bioconductor.org/packages/edgeR" } ], "version": "3.38.1" }, { "repositories": [ { "commit": "f5a3bb568a23b34146ac66329a95ee4785093536", "type": "git", "url": "https://git.bioconductor.org/packages/edgeR" } ], "version": "3.38.4" }, { "repositories": [ { "commit": "0b25adcc6b3cb0a8c641964d1274536ee07ee162", "type": "git", "url": "https://git.bioconductor.org/packages/edgeR" } ], "version": "3.40.0" }, { "repositories": [ { "commit": "197b9a8ccc27016611b262c2c31ca22f991661c5", "type": "git", "url": "https://git.bioconductor.org/packages/edgeR" } ], "version": "3.42.0" } ] }, "r-effects": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cardata", "r-colorspace", "r-estimability", "r-insight", "r-lattice", "r-lme4", "r-nnet", "r-survey" ], "downloads": [ "https://cloud.r-project.org/src/contrib/effects_4.2-2.tar.gz", "https://cloud.r-project.org/src/contrib/effects_4.2-1.tar.gz", "https://cloud.r-project.org/src/contrib/effects_4.2-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=effects" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-effects", "patches": [], "summary": "Effect Displays for Linear, Generalized Linear, and Other Models.\nGraphical and tabular effect displays, e.g., of interactions, for\nvarious statistical models with linear predictors.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/effects_4.2-0.tar.gz" ], "version": "4.2-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/effects_4.2-1.tar.gz" ], "version": "4.2-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/effects_4.2-2.tar.gz" ], "version": "4.2-2" } ] }, "r-elemstatlearn": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ElemStatLearn_2015.6.26.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ElemStatLearn" ], "licenses": [], "maintainers": [], "name": "r-elemstatlearn", "patches": [], "summary": "Data Sets, Functions and Examples from the Book: \"The Elements of\nStatistical Learning, Data Mining, Inference, and Prediction\" by Trevor\nHastie, Robert Tibshirani and Jerome Friedman\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ElemStatLearn_2015.6.26.2.tar.gz" ], "version": "2015.6.26.2" } ] }, "r-ellipse": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ellipse_0.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/ellipse_0.4.5.tar.gz", "https://cloud.r-project.org/src/contrib/ellipse_0.4.3.tar.gz", "https://cloud.r-project.org/src/contrib/ellipse_0.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/ellipse_0.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/ellipse_0.3-8.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ellipse" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-ellipse", "patches": [], "summary": "Functions for Drawing Ellipses and Ellipse-Like Confidence Regions.\nContains various routines for drawing ellipses and ellipse-like\nconfidence regions, implementing the plots described in Murdoch and Chow\n(1996), A graphical display of large correlation matrices, The American\nStatistician 50, 178-180. There are also routines implementing the\nprofile plots described in Bates and Watts (1988), Nonlinear Regression\nAnalysis and its Applications.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ellipse_0.3-8.tar.gz" ], "version": "0.3-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ellipse_0.4.1.tar.gz" ], "version": "0.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ellipse_0.4.2.tar.gz" ], "version": "0.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ellipse_0.4.3.tar.gz" ], "version": "0.4.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ellipse_0.4.5.tar.gz" ], "version": "0.4.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ellipse_0.5.0.tar.gz" ], "version": "0.5.0" } ] }, "r-ellipsis": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-rlang" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ellipsis_0.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/ellipsis_0.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/ellipsis_0.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/ellipsis_0.2.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ellipsis" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-ellipsis", "patches": [], "summary": "Tools for Working with ... The ellipsis is a powerful tool for extending\nfunctions. Unfortunately this power comes at a cost: misspelled\narguments will be silently ignored. The ellipsis package provides a\ncollection of functions to catch problems and alert the user.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ellipsis_0.2.0.1.tar.gz" ], "version": "0.2.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ellipsis_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ellipsis_0.3.1.tar.gz" ], "version": "0.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ellipsis_0.3.2.tar.gz" ], "version": "0.3.2" } ] }, "r-emmeans": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-estimability", "r-mvtnorm", "r-numderiv", "r-plyr", "r-rlang", "r-xtable" ], "downloads": [ "https://cloud.r-project.org/src/contrib/emmeans_2.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/emmeans_1.10.4.tar.gz", "https://cloud.r-project.org/src/contrib/emmeans_1.8.5.tar.gz", "https://cloud.r-project.org/src/contrib/emmeans_1.8.2.tar.gz", "https://cloud.r-project.org/src/contrib/emmeans_1.8.1-1.tar.gz", "https://cloud.r-project.org/src/contrib/emmeans_1.7.4-1.tar.gz", "https://cloud.r-project.org/src/contrib/emmeans_1.7.2.tar.gz", "https://cloud.r-project.org/src/contrib/emmeans_1.7.1-1.tar.gz", "https://cloud.r-project.org/src/contrib/emmeans_1.7.0.tar.gz", "https://cloud.r-project.org/src/contrib/emmeans_1.6.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=emmeans" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-emmeans", "patches": [], "summary": "Estimated Marginal Means, aka Least-Squares Means. Obtain estimated\nmarginal means (EMMs) for many linear, generalized linear, and mixed\nmodels. Compute contrasts or linear functions of EMMs, trends, and\ncomparisons of slopes. Plots and other displays. Least-squares means are\ndiscussed, and the term \"estimated marginal means\" is suggested, in\nSearle, Speed, and Milliken (1980) Population marginal means in the\nlinear model: An alternative to least squares means, The American\nStatistician 34(4), 216-221 .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/emmeans_1.10.4.tar.gz" ], "version": "1.10.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/emmeans_1.6.0.tar.gz" ], "version": "1.6.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/emmeans_1.7.0.tar.gz" ], "version": "1.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/emmeans_1.7.1-1.tar.gz" ], "version": "1.7.1-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/emmeans_1.7.2.tar.gz" ], "version": "1.7.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/emmeans_1.7.4-1.tar.gz" ], "version": "1.7.4-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/emmeans_1.8.1-1.tar.gz" ], "version": "1.8.1-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/emmeans_1.8.2.tar.gz" ], "version": "1.8.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/emmeans_1.8.5.tar.gz" ], "version": "1.8.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/emmeans_2.0.0.tar.gz" ], "version": "2.0.0" } ] }, "r-emmli": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/EMMLi_0.0.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=EMMLi" ], "licenses": [], "maintainers": [], "name": "r-emmli", "patches": [], "summary": "A Maximum Likelihood Approach to the Analysis of Modularity. Fit models\nof modularity to morphological landmarks. Perform model selection on\nresults. Fit models with a single within-module correlation or with\nseparate within-module correlations fitted to each module.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/EMMLi_0.0.3.tar.gz" ], "version": "0.0.3" } ] }, "r-energy": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-boot", "r-gsl", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/energy_1.7-11.tar.gz", "https://cloud.r-project.org/src/contrib/energy_1.7-10.tar.gz", "https://cloud.r-project.org/src/contrib/energy_1.7-9.tar.gz", "https://cloud.r-project.org/src/contrib/energy_1.7-8.tar.gz", "https://cloud.r-project.org/src/contrib/energy_1.7-7.tar.gz", "https://cloud.r-project.org/src/contrib/energy_1.7-6.tar.gz", "https://cloud.r-project.org/src/contrib/energy_1.7-5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=energy" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-energy", "patches": [], "summary": "E-Statistics: Multivariate Inference via the Energy of Data.\nE-statistics (energy) tests and statistics for multivariate and\nunivariate inference, including distance correlation, one-sample, two-\nsample, and multi-sample tests for comparing multivariate distributions,\nare implemented. Measuring and testing multivariate independence based\non distance correlation, partial distance correlation, multivariate\ngoodness-of-fit tests, k-groups and hierarchical clustering based on\nenergy distance, testing for multivariate normality, distance components\n(disco) for non-parametric analysis of structured data, and other energy\nstatistics/methods are implemented.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/energy_1.7-10.tar.gz" ], "version": "1.7-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/energy_1.7-11.tar.gz" ], "version": "1.7-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/energy_1.7-5.tar.gz" ], "version": "1.7-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/energy_1.7-6.tar.gz" ], "version": "1.7-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/energy_1.7-7.tar.gz" ], "version": "1.7-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/energy_1.7-8.tar.gz" ], "version": "1.7-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/energy_1.7-9.tar.gz" ], "version": "1.7-9" } ] }, "r-enrichplot": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotationdbi", "r-aplot", "r-cowplot", "r-dose", "r-europepmc", "r-ggnewscale", "r-ggplot2", "r-ggplotify", "r-ggraph", "r-ggridges", "r-ggtree", "r-gosemsim", "r-gridextra", "r-igraph", "r-magrittr", "r-plyr", "r-purrr", "r-rcolorbrewer", "r-reshape2", "r-rlang", "r-scatterpie", "r-shadowtext", "r-upsetr", "r-yulab-utils" ], "downloads": [ "https://git.bioconductor.org/packages/enrichplot" ], "homepages": [ "https://bioconductor.org/packages/enrichplot" ], "licenses": [], "maintainers": [], "name": "r-enrichplot", "patches": [], "summary": "Visualization of Functional Enrichment Result. The 'enrichplot' package\nimplements several visualization methods for interpreting functional\nenrichment results obtained from ORA or GSEA analysis. All the\nvisualization methods are developed based on 'ggplot2' graphics.\n", "version": [ { "repositories": [ { "commit": "ba7726fa0d4b581b7514dcbb04889cdbdd75ff29", "type": "git", "url": "https://git.bioconductor.org/packages/enrichplot" } ], "version": "1.0.2" }, { "repositories": [ { "commit": "77ee04f60a07cc31151f8f47f8ee64f3a43c9760", "type": "git", "url": "https://git.bioconductor.org/packages/enrichplot" } ], "version": "1.10.2" }, { "repositories": [ { "commit": "ccf3a6d9b7cd9cffd8de6d6263efdffe59d2ec36", "type": "git", "url": "https://git.bioconductor.org/packages/enrichplot" } ], "version": "1.14.1" }, { "repositories": [ { "commit": "cff77b622b2312be546714ec437aa4bc585bac87", "type": "git", "url": "https://git.bioconductor.org/packages/enrichplot" } ], "version": "1.16.1" }, { "repositories": [ { "commit": "eeb21345288d96c116ac308649fa772d03760259", "type": "git", "url": "https://git.bioconductor.org/packages/enrichplot" } ], "version": "1.16.2" }, { "repositories": [ { "commit": "61ea941784a1ed6cc604af1c1cc4532b8b5fcea7", "type": "git", "url": "https://git.bioconductor.org/packages/enrichplot" } ], "version": "1.18.0" }, { "repositories": [ { "commit": "2eeaafb571d35a106eba8ae7df014f3201066e8b", "type": "git", "url": "https://git.bioconductor.org/packages/enrichplot" } ], "version": "1.2.0" }, { "repositories": [ { "commit": "ae72efe5f2ded561958f95bc8b1b41c0fc79840e", "type": "git", "url": "https://git.bioconductor.org/packages/enrichplot" } ], "version": "1.20.0" }, { "repositories": [ { "commit": "6ffe5d9c5dbe5cbea29f2e0941595475bbbcea0e", "type": "git", "url": "https://git.bioconductor.org/packages/enrichplot" } ], "version": "1.4.0" } ] }, "r-ensembldb": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotationdbi", "r-annotationfilter", "r-annotationhub", "r-biobase", "r-biocgenerics", "r-biostrings", "r-curl", "r-dbi", "r-genomeinfodb", "r-genomicfeatures", "r-genomicranges", "r-iranges", "r-protgenerics", "r-rsamtools", "r-rsqlite", "r-rtracklayer", "r-s4vectors" ], "downloads": [ "https://git.bioconductor.org/packages/ensembldb" ], "homepages": [ "https://bioconductor.org/packages/ensembldb" ], "licenses": [], "maintainers": [], "name": "r-ensembldb", "patches": [], "summary": "Utilities to create and use Ensembl-based annotation databases. The\npackage provides functions to create and use transcript centric\nannotation databases/packages. The annotation for the databases are\ndirectly fetched from Ensembl using their Perl API. The functionality\nand data is similar to that of the TxDb packages from the\nGenomicFeatures package, but, in addition to retrieve all\ngene/transcript models and annotations from the database, ensembldb\nprovides a filter framework allowing to retrieve annotations for\nspecific entries like genes encoded on a chromosome region or transcript\nmodels of lincRNA genes. EnsDb databases built with ensembldb contain\nalso protein annotations and mappings between proteins and their\nencoding transcripts. 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Major environmental\nstatistical methods found in the literature and regulatory guidance\ndocuments, with extensive help that explains what these methods do, how\nto use them, and where to find them in the literature. Numerous built-in\ndata sets from regulatory guidance documents and environmental\nstatistics literature. 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Calls copy\nnumber variants (CNVs) from targeted sequence data, typically exome\nsequencing experiments designed to identify the genetic basis of\nMendelian disorders.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ExomeDepth_1.1.15.tar.gz" ], "version": "1.1.15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ExomeDepth_1.1.16.tar.gz" ], "version": "1.1.16" } ] }, "r-experimenthub": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotationhub", "r-biocfilecache", "r-biocgenerics", "r-biocmanager", "r-curl", "r-rappdirs", "r-s4vectors" ], "downloads": [ "https://git.bioconductor.org/packages/ExperimentHub" ], "homepages": [ "https://bioconductor.org/packages/ExperimentHub" ], "licenses": [], "maintainers": [], "name": "r-experimenthub", "patches": [], "summary": "Client to access ExperimentHub resources. This package provides a client\nfor the Bioconductor ExperimentHub web resource. ExperimentHub provides\na central location where curated data from experiments, publications or\ntraining courses can be accessed. Each resource has associated metadata,\ntags and date of modification. The client creates and manages a local\ncache of files retrieved enabling quick and reproducible access.\n", "version": [ { "repositories": [ { "commit": "61d51b7ca968d6cc1befe299e0784d9a19ca51f6", "type": "git", "url": "https://git.bioconductor.org/packages/ExperimentHub" } ], "version": "1.16.1" }, { "repositories": [ { "commit": "4e10686fa72baefef5d2990f41a7c44c527a7a7d", "type": "git", "url": "https://git.bioconductor.org/packages/ExperimentHub" } ], "version": "2.2.1" }, { "repositories": [ { "commit": "bdce35d3a89e8633cc395f28991e6b5d1eccbe8e", "type": "git", "url": "https://git.bioconductor.org/packages/ExperimentHub" } ], "version": "2.4.0" }, { "repositories": [ { "commit": "557ba29720bce85902a85445dd0435b7356cdd7f", "type": "git", "url": "https://git.bioconductor.org/packages/ExperimentHub" } ], "version": "2.6.0" }, { "repositories": [ { "commit": "f25c854c51878844098290a05936cb35b235f30e", "type": "git", "url": "https://git.bioconductor.org/packages/ExperimentHub" } ], "version": "2.8.0" } ] }, "r-expint": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/expint_0.1-8.tar.gz", "https://cloud.r-project.org/src/contrib/expint_0.1-7.tar.gz", "https://cloud.r-project.org/src/contrib/expint_0.1-6.tar.gz", "https://cloud.r-project.org/src/contrib/expint_0.1-5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=expint" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-expint", "patches": [], "summary": "Exponential Integral and Incomplete Gamma Function. The exponential\nintegrals E_1(x), E_2(x), E_n(x) and Ei(x), and the incomplete gamma\nfunction G(a, x) defined for negative values of its first argument. The\npackage also gives easy access to the underlying C routines through an\nAPI; see the package vignette for details. A test package included in\nsub-directory example_API provides an implementation. C routines derived\nfrom the GNU Scientific Library .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/expint_0.1-5.tar.gz" ], "version": "0.1-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/expint_0.1-6.tar.gz" ], "version": "0.1-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/expint_0.1-7.tar.gz" ], "version": "0.1-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/expint_0.1-8.tar.gz" ], "version": "0.1-8" } ] }, "r-expm": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-matrix" ], "downloads": [ "https://cloud.r-project.org/src/contrib/expm_1.0-0.tar.gz", "https://cloud.r-project.org/src/contrib/expm_0.999-7.tar.gz", "https://cloud.r-project.org/src/contrib/expm_0.999-6.tar.gz", "https://cloud.r-project.org/src/contrib/expm_0.999-4.tar.gz", "https://cloud.r-project.org/src/contrib/expm_0.999-3.tar.gz", "https://cloud.r-project.org/src/contrib/expm_0.999-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=expm" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-expm", "patches": [], "summary": "Matrix Exponential, Log, 'etc'. Computation of the matrix exponential,\nlogarithm, sqrt, and related quantities.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/expm_0.999-2.tar.gz" ], "version": "0.999-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/expm_0.999-3.tar.gz" ], "version": "0.999-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/expm_0.999-4.tar.gz" ], "version": "0.999-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/expm_0.999-6.tar.gz" ], "version": "0.999-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/expm_0.999-7.tar.gz" ], "version": "0.999-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/expm_1.0-0.tar.gz" ], "version": "1.0-0" } ] }, "r-factoextra": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-abind", "r-cluster", "r-dendextend", "r-factominer", "r-ggplot2", "r-ggpubr", "r-ggrepel", "r-reshape2", "r-tidyr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/factoextra_1.0.7.tar.gz", "https://cloud.r-project.org/src/contrib/factoextra_1.0.5.tar.gz", "https://cloud.r-project.org/src/contrib/factoextra_1.0.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=factoextra" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-factoextra", "patches": [], "summary": "Extract and Visualize the Results of Multivariate Data Analyses.\nProvides some easy-to-use functions to extract and visualize the output\nof multivariate data analyses, including 'PCA' (Principal Component\nAnalysis), 'CA' (Correspondence Analysis), 'MCA' (Multiple\nCorrespondence Analysis), 'FAMD' (Factor Analysis of Mixed Data), 'MFA'\n(Multiple Factor Analysis) and 'HMFA' (Hierarchical Multiple Factor\nAnalysis) functions from different R packages. It contains also\nfunctions for simplifying some clustering analysis steps and provides\n'ggplot2' - based elegant data visualization.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/factoextra_1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/factoextra_1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/factoextra_1.0.7.tar.gz" ], "version": "1.0.7" } ] }, "r-factominer": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-car", "r-cluster", "r-dt", "r-ellipse", "r-emmeans", "r-flashclust", "r-ggplot2", "r-ggrepel", "r-lattice", "r-leaps", "r-mass", "r-multcompview", "r-scatterplot3d" ], "downloads": [ "https://cloud.r-project.org/src/contrib/FactoMineR_2.11.tar.gz", "https://cloud.r-project.org/src/contrib/FactoMineR_2.8.tar.gz", "https://cloud.r-project.org/src/contrib/FactoMineR_2.6.tar.gz", "https://cloud.r-project.org/src/contrib/FactoMineR_2.4.tar.gz", "https://cloud.r-project.org/src/contrib/FactoMineR_1.42.tar.gz", "https://cloud.r-project.org/src/contrib/FactoMineR_1.41.tar.gz", "https://cloud.r-project.org/src/contrib/FactoMineR_1.40.tar.gz", "https://cloud.r-project.org/src/contrib/FactoMineR_1.39.tar.gz", "https://cloud.r-project.org/src/contrib/FactoMineR_1.38.tar.gz", "https://cloud.r-project.org/src/contrib/FactoMineR_1.36.tar.gz", "https://cloud.r-project.org/src/contrib/FactoMineR_1.35.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=FactoMineR" ], "licenses": [], "maintainers": [], "name": "r-factominer", "patches": [], "summary": "Multivariate Exploratory Data Analysis and Data Mining. Exploratory data\nanalysis methods to summarize, visualize and describe datasets. The main\nprincipal component methods are available, those with the largest\npotential in terms of applications: principal component analysis (PCA)\nwhen variables are quantitative, correspondence analysis (CA) and\nmultiple correspondence analysis (MCA) when variables are categorical,\nMultiple Factor Analysis when variables are structured in groups, etc.\nand hierarchical cluster analysis. F. Husson, S. Le and J. Pages (2017).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/FactoMineR_1.35.tar.gz" ], "version": "1.35" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/FactoMineR_1.36.tar.gz" ], "version": "1.36" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/FactoMineR_1.38.tar.gz" ], "version": "1.38" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/FactoMineR_1.39.tar.gz" ], "version": "1.39" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/FactoMineR_1.40.tar.gz" ], "version": "1.40" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/FactoMineR_1.41.tar.gz" ], "version": "1.41" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/FactoMineR_1.42.tar.gz" ], "version": "1.42" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/FactoMineR_2.11.tar.gz" ], "version": "2.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/FactoMineR_2.4.tar.gz" ], "version": "2.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/FactoMineR_2.6.tar.gz" ], "version": "2.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/FactoMineR_2.8.tar.gz" ], "version": "2.8" } ] }, "r-fansi": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/fansi_1.0.6.tar.gz", "https://cloud.r-project.org/src/contrib/fansi_1.0.4.tar.gz", "https://cloud.r-project.org/src/contrib/fansi_1.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/fansi_1.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/fansi_0.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/fansi_0.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/fansi_0.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/fansi_0.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/fansi_0.2.3.tar.gz", "https://cloud.r-project.org/src/contrib/fansi_0.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/fansi_0.2.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=fansi" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-fansi", "patches": [], "summary": "ANSI Control Sequence Aware String Functions. Counterparts to R string\nmanipulation functions that account for the effects of ANSI text\nformatting control sequences.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/fansi_0.2.1.tar.gz" ], "version": "0.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fansi_0.2.2.tar.gz" ], "version": "0.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fansi_0.2.3.tar.gz" ], "version": "0.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fansi_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fansi_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fansi_0.4.1.tar.gz" ], "version": "0.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fansi_0.5.0.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fansi_1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fansi_1.0.3.tar.gz" ], "version": "1.0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fansi_1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fansi_1.0.6.tar.gz" ], "version": "1.0.6" } ] }, "r-farver": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/farver_2.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/farver_2.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/farver_2.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/farver_2.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/farver_2.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=farver" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-farver", "patches": [], "summary": "High Performance Colour Space Manipulation. The encoding of colour can\nbe handled in many different ways, using different colour spaces. As\ndifferent colour spaces have different uses, efficient conversion\nbetween these representations are important. The 'farver' package\nprovides a set of functions that gives access to very fast colour space\nconversion and comparisons implemented in C++, and offers speed\nimprovements over the 'convertColor' function in the 'grDevices'\npackage.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/farver_2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/farver_2.0.3.tar.gz" ], "version": "2.0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/farver_2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/farver_2.1.1.tar.gz" ], "version": "2.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/farver_2.1.2.tar.gz" ], "version": "2.1.2" } ] }, "r-fastcluster": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/fastcluster_1.2.6.tar.gz", "https://cloud.r-project.org/src/contrib/fastcluster_1.2.3.tar.gz", "https://cloud.r-project.org/src/contrib/fastcluster_1.1.25.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=fastcluster" ], "licenses": [ "BSD-2-Clause OR GPL-2.0-only OR custom" ], "maintainers": [], "name": "r-fastcluster", "patches": [], "summary": "Fast Hierarchical Clustering Routines for R and 'Python'. This is a two-\nin-one package which provides interfaces to both R and 'Python'. It\nimplements fast hierarchical, agglomerative clustering routines. Part of\nthe functionality is designed as drop-in replacement for existing\nroutines: linkage() in the 'SciPy' package 'scipy.cluster.hierarchy',\nhclust() in R's 'stats' package, and the 'flashClust' package. It\nprovides the same functionality with the benefit of a much faster\nimplementation. Moreover, there are memory-saving routines for\nclustering of vector data, which go beyond what the existing packages\nprovide. For information on how to install the 'Python' files, see the\nfile INSTALL in the source distribution.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/fastcluster_1.1.25.tar.gz" ], "version": "1.1.25" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fastcluster_1.2.3.tar.gz" ], "version": "1.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fastcluster_1.2.6.tar.gz" ], "version": "1.2.6" } ] }, "r-fastdigest": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/fastdigest_0.6-4.tar.gz", "https://cloud.r-project.org/src/contrib/fastdigest_0.6-3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=fastdigest" ], "licenses": [ "Artistic-2.0" ], "maintainers": [ "dorton21" ], "name": "r-fastdigest", "patches": [], "summary": "Fast, Low Memory-Footprint Digests of R Objects. Provides an R interface\nto Bob Jenkin's streaming, non-cryptographic 'SpookyHash' hash algorithm\nfor use in digest-based comparisons of R objects. 'fastdigest' plugs\ndirectly into R's internal serialization machinery, allowing digests of\nall R objects the serialize() function supports, including reference-\nstyle objects via custom hooks. Speed is high and scales linearly by\nobject size; memory usage is constant and negligible.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/fastdigest_0.6-3.tar.gz" ], "version": "0.6-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fastdigest_0.6-4.tar.gz" ], "version": "0.6-4" } ] }, "r-fastdummies": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-data-table", "r-stringr", "r-tibble" ], "downloads": [ "https://cloud.r-project.org/src/contrib/fastDummies_1.7.4.tar.gz", null ], "homepages": [ "https://jacobkap.github.io/fastDummies/" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-fastdummies", "patches": [], "summary": "Fast Creation of Dummy (Binary) Columns and Rows from Categorical\nVariables.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/fastDummies_1.7.4.tar.gz" ], "version": "1.7.4" } ] }, "r-fastica": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/fastICA_1.2-5.1.tar.gz", "https://cloud.r-project.org/src/contrib/fastICA_1.2-3.tar.gz", "https://cloud.r-project.org/src/contrib/fastICA_1.2-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=fastICA" ], "licenses": [], "maintainers": [], "name": "r-fastica", "patches": [], "summary": "FastICA Algorithms to Perform ICA and Projection Pursuit. Implementation\nof FastICA algorithm to perform Independent Component Analysis (ICA) and\nProjection Pursuit.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/fastICA_1.2-2.tar.gz" ], "version": "1.2-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fastICA_1.2-3.tar.gz" ], "version": "1.2-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fastICA_1.2-5.1.tar.gz" ], "version": "1.2-5.1" } ] }, "r-fastmap": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/fastmap_1.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/fastmap_1.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/fastmap_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/fastmap_1.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=fastmap" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-fastmap", "patches": [], "summary": "Fast Implementation of a Key-Value Store. Fast implementation of a key-\nvalue store. Environments are commonly used as key-value stores, but\nevery time a new key is used, it is added to R's global symbol table,\ncausing a small amount of memory leakage. This can be problematic in\ncases where many different keys are used. Fastmap avoids this memory\nleak issue by implementing the map using data structures in C++.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/fastmap_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fastmap_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fastmap_1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fastmap_1.2.0.tar.gz" ], "version": "1.2.0" } ] }, "r-fastmatch": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/fastmatch_1.1-4.tar.gz", "https://cloud.r-project.org/src/contrib/fastmatch_1.1-3.tar.gz", "https://cloud.r-project.org/src/contrib/fastmatch_1.1-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=fastmatch" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-fastmatch", "patches": [], "summary": "Fast 'match()' Function. Package providing a fast match() replacement\nfor cases that require repeated look-ups. It is slightly faster that R's\nbuilt-in match() function on first match against a table, but extremely\nfast on any subsequent lookup as it keeps the hash table in memory.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/fastmatch_1.1-0.tar.gz" ], "version": "1.1-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fastmatch_1.1-3.tar.gz" ], "version": "1.1-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fastmatch_1.1-4.tar.gz" ], "version": "1.1-4" } ] }, "r-fastmatrix": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/fastmatrix_0.5-772.tar.gz", "https://cloud.r-project.org/src/contrib/fastmatrix_0.5.tar.gz", "https://cloud.r-project.org/src/contrib/fastmatrix_0.4-1245.tar.gz", "https://cloud.r-project.org/src/contrib/fastmatrix_0.4-1.tar.gz", "https://cloud.r-project.org/src/contrib/fastmatrix_0.3-8196.tar.gz", "https://cloud.r-project.org/src/contrib/fastmatrix_0.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=fastmatrix" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-fastmatrix", "patches": [], "summary": "Fast Computation of some Matrices Useful in Statistics. Small set of\nfunctions to fast computation of some matrices and operations useful in\nstatistics and econometrics. Currently, there are functions for\nefficient computation of duplication, commutation and symmetrizer\nmatrices with minimal storage requirements. Some commonly used matrix\ndecompositions (LU and LDL), basic matrix operations (for instance,\nHadamard, Kronecker products and the Sherman-Morrison formula) and\niterative solvers for linear systems are also available. In addition,\nthe package includes a number of common statistical procedures such as\nthe sweep operator, weighted mean and covariance matrix using an online\nalgorithm, linear regression (using Cholesky, QR, SVD, sweep operator\nand conjugate gradients methods), ridge regression (with optimal\nselection of the ridge parameter considering the GCV procedure),\nfunctions to compute the multivariate skewness, kurtosis, Mahalanobis\ndistance (checking the positive defineteness) and the Wilson-Hilferty\ntransformation of chi squared variables. Furthermore, the package\nprovides interfaces to C code callable by another C code from other R\npackages.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/fastmatrix_0.3.tar.gz" ], "version": "0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fastmatrix_0.3-8196.tar.gz" ], "version": "0.3-8196" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fastmatrix_0.4-1.tar.gz" ], "version": "0.4-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fastmatrix_0.4-1245.tar.gz" ], "version": "0.4-1245" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fastmatrix_0.5.tar.gz" ], "version": "0.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fastmatrix_0.5-772.tar.gz" ], "version": "0.5-772" } ] }, "r-fda": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-desolve", "r-fds", "r-matrix" ], "downloads": [ "https://cloud.r-project.org/src/contrib/fda_6.1.8.tar.gz", "https://cloud.r-project.org/src/contrib/fda_6.0.5.tar.gz", "https://cloud.r-project.org/src/contrib/fda_6.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/fda_5.5.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=fda" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-fda", "patches": [], "summary": "Functional Data Analysis. These functions were developed to support\nfunctional data analysis as described in Ramsay, J. O. and Silverman, B.\nW. (2005) Functional Data Analysis. New York: Springer and in Ramsay, J.\nO., Hooker, Giles, and Graves, Spencer (2009).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/fda_5.5.1.tar.gz" ], "version": "5.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fda_6.0.3.tar.gz" ], "version": "6.0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fda_6.0.5.tar.gz" ], "version": "6.0.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fda_6.1.8.tar.gz" ], "version": "6.1.8" } ] }, "r-fdb-infiniummethylation-hg18": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotationdbi", "r-biostrings", "r-genomicfeatures", "r-org-hs-eg-db", "r-txdb-hsapiens-ucsc-hg18-knowngene" ], "downloads": [ "https://bioconductor.org/packages/release/data/annotation/src/contrib/FDb.InfiniumMethylation.hg18_2.2.0.tar.gz", "https://git.bioconductor.org/packages/FDb.InfiniumMethylation.hg18" ], "homepages": [ "https://bioconductor.org/packages/FDb.InfiniumMethylation.hg18" ], "licenses": [], "maintainers": [], "name": "r-fdb-infiniummethylation-hg18", "patches": [], "summary": "Annotation package for Illumina Infinium DNA methylation probes.\nCompiled HumanMethylation27 and HumanMethylation450 annotations\n", "version": [ { "downloads": [ "https://bioconductor.org/packages/release/data/annotation/src/contrib/FDb.InfiniumMethylation.hg18_2.2.0.tar.gz" ], "version": "2.2.0" } ] }, "r-fdb-infiniummethylation-hg19": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotationdbi", "r-biostrings", "r-genomicfeatures", "r-org-hs-eg-db", "r-txdb-hsapiens-ucsc-hg19-knowngene" ], "downloads": [ "https://bioconductor.org/packages/release/data/annotation/src/contrib/FDb.InfiniumMethylation.hg19_2.2.0.tar.gz", "https://git.bioconductor.org/packages/FDb.InfiniumMethylation.hg19" ], "homepages": [ "https://bioconductor.org/packages/FDb.InfiniumMethylation.hg19" ], "licenses": [], "maintainers": [], "name": "r-fdb-infiniummethylation-hg19", "patches": [], "summary": "Annotation package for Illumina Infinium DNA methylation probes.\nCompiled HumanMethylation27 and HumanMethylation450 annotations.\n", "version": [ { "downloads": [ "https://bioconductor.org/packages/release/data/annotation/src/contrib/FDb.InfiniumMethylation.hg19_2.2.0.tar.gz" ], "version": "2.2.0" } ] }, "r-fds": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-rainbow", "r-rcurl" ], "downloads": [ "https://cloud.r-project.org/src/contrib/fds_1.8.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=fds" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-fds", "patches": [], "summary": "Functional data sets.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/fds_1.8.tar.gz" ], "version": "1.8" } ] }, "r-ff": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-bit" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ff_4.0.12.tar.gz", "https://cloud.r-project.org/src/contrib/ff_4.0.9.tar.gz", "https://cloud.r-project.org/src/contrib/ff_4.0.7.tar.gz", "https://cloud.r-project.org/src/contrib/ff_4.0.5.tar.gz", "https://cloud.r-project.org/src/contrib/ff_4.0.4.tar.gz", "https://cloud.r-project.org/src/contrib/ff_2.2-14.tar.gz", "https://cloud.r-project.org/src/contrib/ff_2.2-13.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ff" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only OR custom" ], "maintainers": [], "name": "r-ff", "patches": [ "utk_platform_macros.hpp.patch when target=aarch64:" ], "summary": "Memory-Efficient Storage of Large Data on Disk and Fast Access\nFunctions. The ff package provides data structures that are stored on\ndisk but behave (almost) as if they were in RAM by transparently mapping\nonly a section (pagesize) in main memory - the effective virtual memory\nconsumption per ff object. ff supports R's standard atomic data types\n'double', 'logical', 'raw' and 'integer' and non-standard atomic types\nboolean (1 bit), quad (2 bit unsigned), nibble (4 bit unsigned), byte (1\nbyte signed with NAs), ubyte (1 byte unsigned), short (2 byte signed\nwith NAs), ushort (2 byte unsigned), single (4 byte float with NAs). For\nexample 'quad' allows efficient storage of genomic data as an\n'A','T','G','C' factor. The unsigned types support 'circular'\narithmetic. There is also support for close-to-atomic types 'factor',\n'ordered', 'POSIXct', 'Date' and custom close-to-atomic types. ff not\nonly has native C-support for vectors, matrices and arrays with flexible\ndimorder (major column-order, major row-order and generalizations for\narrays). There is also a ffdf class not unlike data.frames and\nimport/export filters for csv files. ff objects store raw data in binary\nflat files in native encoding, and complement this with metadata stored\nin R as physical and virtual attributes. ff objects have well-defined\nhybrid copying semantics, which gives rise to certain performance\nimprovements through virtualization. ff objects can be stored and\nreopened across R sessions. ff files can be shared by multiple ff R\nobjects (using different data en/de-coding schemes) in the same process\nor from multiple R processes to exploit parallelism. A wide choice of\nfinalizer options allows to work with 'permanent' files as well as\ncreating/removing 'temporary' ff files completely transparent to the\nuser. On certain OS/Filesystem combinations, creating the ff files works\nwithout notable delay thanks to using sparse file allocation. Several\naccess optimization techniques such as Hybrid Index Preprocessing and\nVirtualization are implemented to achieve good performance even with\nlarge datasets, for example virtual matrix transpose without touching a\nsingle byte on disk. Further, to reduce disk I/O, 'logicals' and non-\nstandard data types get stored native and compact on binary flat files\ni.e. logicals take up exactly 2 bits to represent TRUE, FALSE and NA.\nBeyond basic access functions, the ff package also provides\ncompatibility functions that facilitate writing code for ff and ram\nobjects and support for batch processing on ff objects (e.g. as.ram,\nas.ff, ffapply). ff interfaces closely with functionality from package\n'bit': chunked looping, fast bit operations and coercions between\ndifferent objects that can store subscript information ('bit',\n'bitwhich', ff 'boolean', ri range index, hi hybrid index). This allows\nto work interactively with selections of large datasets and quickly\nmodify selection criteria. Further high-performance enhancements can be\nmade available upon request.x\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ff_2.2-13.tar.gz" ], "version": "2.2-13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ff_2.2-14.tar.gz" ], "version": "2.2-14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ff_4.0.12.tar.gz" ], "version": "4.0.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ff_4.0.4.tar.gz" ], "version": "4.0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ff_4.0.5.tar.gz" ], "version": "4.0.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ff_4.0.7.tar.gz" ], "version": "4.0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ff_4.0.9.tar.gz" ], "version": "4.0.9" } ] }, "r-fftwtools": { "alias": [], "categories": [], "dependencies": [ "c", "fftw", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/fftwtools_0.9-11.tar.gz", "https://cloud.r-project.org/src/contrib/fftwtools_0.9-9.tar.gz", "https://cloud.r-project.org/src/contrib/fftwtools_0.9-8.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=fftwtools" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-fftwtools", "patches": [], "summary": "Wrapper for 'FFTW3' Includes: One-Dimensional Univariate, One-\nDimensional Multivariate, and Two-Dimensional Transform. Provides a\nwrapper for several 'FFTW' functions. This package provides access to\nthe two-dimensional 'FFT', the multivariate 'FFT', and the one-\ndimensional real to complex 'FFT' using the 'FFTW3' library. The package\nincludes the functions fftw() and mvfftw() which are designed to mimic\nthe functionality of the R functions fft() and mvfft(). The 'FFT'\nfunctions have a parameter that allows them to not return the redundant\ncomplex conjugate when the input is real data.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/fftwtools_0.9-11.tar.gz" ], "version": "0.9-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fftwtools_0.9-8.tar.gz" ], "version": "0.9-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fftwtools_0.9-9.tar.gz" ], "version": "0.9-9" } ] }, "r-fgsea": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-bh", "r-biocparallel", "r-cowplot", "r-data-table", "r-fastmatch", "r-ggplot2", "r-gridextra", "r-matrix", "r-rcpp", "r-scales" ], "downloads": [ "https://git.bioconductor.org/packages/fgsea" ], "homepages": [ "https://bioconductor.org/packages/fgsea" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-fgsea", "patches": [], "summary": "Fast Gene Set Enrichment Analysis. The package implements an algorithm\nfor fast gene set enrichment analysis. Using the fast algorithm allows\nto make more permutations and get more fine grained p-values, which\nallows to use accurate stantard approaches to multiple hypothesis\ncorrection.\n", "version": [ { "repositories": [ { "commit": "fb06a6ebfb4a195e77e37226d100a2148b90c5f3", "type": "git", "url": "https://git.bioconductor.org/packages/fgsea" } ], "version": "1.10.1" }, { "repositories": [ { "commit": "9d9df596c7e160afa18e067b7637cfc465494318", "type": "git", "url": "https://git.bioconductor.org/packages/fgsea" } ], "version": "1.16.0" }, { "repositories": [ { "commit": "99b04eef664204d0dca4b9f8027cd7eefb006b72", "type": "git", "url": "https://git.bioconductor.org/packages/fgsea" } ], "version": "1.2.1" }, { "repositories": [ { "commit": "b704f81687dc16afdaafc6d30108c62a067856b2", "type": "git", "url": "https://git.bioconductor.org/packages/fgsea" } ], "version": "1.20.0" }, { "repositories": [ { "commit": "e4e203aa64faa984e0406fed5d87a422d9df92f2", "type": "git", "url": "https://git.bioconductor.org/packages/fgsea" } ], "version": "1.22.0" }, { "repositories": [ { "commit": "ac74ccd935c15623b8584caa791835aec514144b", "type": "git", "url": "https://git.bioconductor.org/packages/fgsea" } ], "version": "1.24.0" }, { "repositories": [ { "commit": "102b439e2208ae415dc19d3d1ac8936f9c5999f1", "type": "git", "url": "https://git.bioconductor.org/packages/fgsea" } ], "version": "1.26.0" }, { "repositories": [ { "commit": "73de5ff364e520ac99507a9ee5a61a0d23d3c44e", "type": "git", "url": "https://git.bioconductor.org/packages/fgsea" } ], "version": "1.4.1" }, { "repositories": [ { "commit": "52b801b7c2dfd8238fa8f2b402fddb4fda60271d", "type": "git", "url": "https://git.bioconductor.org/packages/fgsea" } ], "version": "1.6.0" }, { "repositories": [ { "commit": "bb2898aca9fb23e90770671a83fe23f79bb1841b", "type": "git", "url": "https://git.bioconductor.org/packages/fgsea" } ], "version": "1.8.0" } ] }, "r-fields": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-maps", "r-spam", "r-viridis", "r-viridislite" ], "downloads": [ "https://cloud.r-project.org/src/contrib/fields_16.2.tar.gz", "https://cloud.r-project.org/src/contrib/fields_14.1.tar.gz", "https://cloud.r-project.org/src/contrib/fields_13.3.tar.gz", "https://cloud.r-project.org/src/contrib/fields_11.6.tar.gz", "https://cloud.r-project.org/src/contrib/fields_9.9.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=fields" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-fields", "patches": [], "summary": "Tools for Spatial Data. For curve, surface and function fitting with an\nemphasis; on splines, spatial data, geostatistics, and spatial\nstatistics. The major methods; include cubic, and thin plate splines,\nKriging, and compactly supported; covariance functions for large data\nsets. The splines and Kriging methods are; supported by functions that\ncan determine the smoothing parameter; (nugget and sill variance) and\nother covariance function parameters by cross; validation and also by\nrestricted maximum likelihood. For Kriging; there is an easy to use\nfunction that also estimates the correlation; scale (range parameter). A\nmajor feature is that any covariance function; implemented in R and\nfollowing a simple format can be used for; spatial prediction. There are\nalso many useful functions for plotting; and working with spatial data\nas images. This package also contains; an implementation of sparse\nmatrix methods for large spatial data; sets and currently requires the\nsparse matrix (spam) package. Use; help(fields) to get started and for\nan overview. The fields source; code is deliberately commented and\nprovides useful explanations of; numerical details as a companion to the\nmanual pages. The commented; source code can be viewed by expanding the\nsource code version; and looking in the R subdirectory. The reference\nfor fields can be generated; by the citation function in R and has DOI\n. Development; of this package was supported in\npart by the National Science Foundation Grant; 1417857, the National\nCenter for Atmospheric Research, and Colorado School of Mines.; See the\nFields URL; for a vignette on using this package and some background on\nspatial statistics.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/fields_11.6.tar.gz" ], "version": "11.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fields_13.3.tar.gz" ], "version": "13.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fields_14.1.tar.gz" ], "version": "14.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fields_16.2.tar.gz" ], "version": "16.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fields_9.9.tar.gz" ], "version": "9.9" } ] }, "r-filehash": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-digest" ], "downloads": [ "https://cloud.r-project.org/src/contrib/filehash_2.4-6.tar.gz", "https://cloud.r-project.org/src/contrib/filehash_2.4-5.tar.gz", "https://cloud.r-project.org/src/contrib/filehash_2.4-3.tar.gz", "https://cloud.r-project.org/src/contrib/filehash_2.4-2.tar.gz", "https://cloud.r-project.org/src/contrib/filehash_2.4-1.tar.gz", "https://cloud.r-project.org/src/contrib/filehash_2.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=filehash" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-filehash", "patches": [], "summary": "Simple Key-Value Database. Implements a simple key-value style database\nwhere character string keys are associated with data values that are\nstored on the disk. A simple interface is provided for inserting,\nretrieving, and deleting data from the database. Utilities are provided\nthat allow 'filehash' databases to be treated much like environments and\nlists are already used in R. These utilities are provided to encourage\ninteractive and exploratory analysis on large datasets. Three different\nfile formats for representing the database are currently available and\nnew formats can easily be incorporated by third parties for use in the\n'filehash' framework.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/filehash_2.3.tar.gz" ], "version": "2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/filehash_2.4-1.tar.gz" ], "version": "2.4-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/filehash_2.4-2.tar.gz" ], "version": "2.4-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/filehash_2.4-3.tar.gz" ], "version": "2.4-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/filehash_2.4-5.tar.gz" ], "version": "2.4-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/filehash_2.4-6.tar.gz" ], "version": "2.4-6" } ] }, "r-filelock": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/filelock_1.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/filelock_1.0.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=filelock" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-filelock", "patches": [], "summary": "Portable File Locking. Place an exclusive or shared lock on a file. It\nuses 'LockFile' on Windows and 'fcntl' locks on Unix-like systems.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/filelock_1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/filelock_1.0.3.tar.gz" ], "version": "1.0.3" } ] }, "r-findpython": { "alias": [], "categories": [], "dependencies": [ "gmake", "python", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/findpython_1.0.8.tar.gz", "https://cloud.r-project.org/src/contrib/findpython_1.0.7.tar.gz", "https://cloud.r-project.org/src/contrib/findpython_1.0.5.tar.gz", "https://cloud.r-project.org/src/contrib/findpython_1.0.4.tar.gz", "https://cloud.r-project.org/src/contrib/findpython_1.0.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=findpython" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-findpython", "patches": [], "summary": "Package designed to find an acceptable python binary.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/findpython_1.0.3.tar.gz" ], "version": "1.0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/findpython_1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/findpython_1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/findpython_1.0.7.tar.gz" ], "version": "1.0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/findpython_1.0.8.tar.gz" ], "version": "1.0.8" } ] }, "r-fit-models": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-lattice" ], "downloads": [ "https://cloud.r-project.org/src/contrib/fit.models_0.64.tar.gz", "https://cloud.r-project.org/src/contrib/fit.models_0.5-14.tar.gz", "https://cloud.r-project.org/src/contrib/fit.models_0.5-13.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=fit.models" ], "licenses": [], "maintainers": [], "name": "r-fit-models", "patches": [], "summary": "Compare Fitted Models. The fit.models function and its associated\nmethods (coefficients, print, summary, plot, etc.) were originally\nprovided in the robust package to compare robustly and classically\nfitted model objects. See chapters 2, 3, and 5 in Insightful (2002)\n'Robust Library User's Guide'\n). The aim of the\nfit.models package is to separate this fitted model object comparison\nfunctionality from the robust package and to extend it to support\nfitting methods (e.g., classical, robust, Bayesian, regularized, etc.)\nmore generally.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/fit.models_0.5-13.tar.gz" ], "version": "0.5-13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fit.models_0.5-14.tar.gz" ], "version": "0.5-14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fit.models_0.64.tar.gz" ], "version": "0.64" } ] }, "r-fitdistrplus": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-mass", "r-npsurv", "r-rlang", "r-survival" ], "downloads": [ "https://cloud.r-project.org/src/contrib/fitdistrplus_1.2-1.tar.gz", "https://cloud.r-project.org/src/contrib/fitdistrplus_1.1-11.tar.gz", "https://cloud.r-project.org/src/contrib/fitdistrplus_1.1-8.tar.gz", "https://cloud.r-project.org/src/contrib/fitdistrplus_1.1-6.tar.gz", "https://cloud.r-project.org/src/contrib/fitdistrplus_1.1-3.tar.gz", "https://cloud.r-project.org/src/contrib/fitdistrplus_1.0-14.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=fitdistrplus" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-fitdistrplus", "patches": [], "summary": "Help to Fit of a Parametric Distribution to Non-Censored or Censored\nData. Extends the fitdistr() function (of the MASS package) with several\nfunctions to help the fit of a parametric distribution to non-censored\nor censored data. Censored data may contain left censored, right\ncensored and interval censored values, with several lower and upper\nbounds. In addition to maximum likelihood estimation (MLE), the package\nprovides moment matching (MME), quantile matching (QME) and maximum\ngoodness-of-fit estimation (MGE) methods (available only for non-\ncensored data). Weighted versions of MLE, MME and QME are available. See\ne.g. Casella & Berger (2002). Statistical inference. Pacific Grove.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/fitdistrplus_1.0-14.tar.gz" ], "version": "1.0-14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fitdistrplus_1.1-11.tar.gz" ], "version": "1.1-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fitdistrplus_1.1-3.tar.gz" ], "version": "1.1-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fitdistrplus_1.1-6.tar.gz" ], "version": "1.1-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fitdistrplus_1.1-8.tar.gz" ], "version": "1.1-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fitdistrplus_1.2-1.tar.gz" ], "version": "1.2-1" } ] }, "r-flashclust": { "alias": [], "categories": [], "dependencies": [ "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/flashClust_1.01-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=flashClust" ], "licenses": [], "maintainers": [], "name": "r-flashclust", "patches": [], "summary": "Implementation of optimal hierarchical clustering.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/flashClust_1.01-2.tar.gz" ], "version": "1.01-2" } ] }, "r-flexclust": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-class", "r-lattice", "r-modeltools" ], "downloads": [ "https://cloud.r-project.org/src/contrib/flexclust_1.4-2.tar.gz", "https://cloud.r-project.org/src/contrib/flexclust_1.4-1.tar.gz", "https://cloud.r-project.org/src/contrib/flexclust_1.4-0.tar.gz", "https://cloud.r-project.org/src/contrib/flexclust_1.3-5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=flexclust" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-flexclust", "patches": [], "summary": "Flexible Cluster Algorithms. The main function kcca implements a general\nframework for k-centroids cluster analysis supporting arbitrary distance\nmeasures and centroid computation. Further cluster methods include hard\ncompetitive learning, neural gas, and QT clustering. There are numerous\nvisualization methods for cluster results (neighborhood graphs, convex\ncluster hulls, barcharts of centroids, ...), and bootstrap methods for\nthe analysis of cluster stability.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/flexclust_1.3-5.tar.gz" ], "version": "1.3-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/flexclust_1.4-0.tar.gz" ], "version": "1.4-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/flexclust_1.4-1.tar.gz" ], "version": "1.4-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/flexclust_1.4-2.tar.gz" ], "version": "1.4-2" } ] }, "r-flexmix": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-lattice", "r-modeltools", "r-nnet" ], "downloads": [ "https://cloud.r-project.org/src/contrib/flexmix_2.3-19.tar.gz", "https://cloud.r-project.org/src/contrib/flexmix_2.3-18.tar.gz", "https://cloud.r-project.org/src/contrib/flexmix_2.3-17.tar.gz", "https://cloud.r-project.org/src/contrib/flexmix_2.3-15.tar.gz", "https://cloud.r-project.org/src/contrib/flexmix_2.3-14.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=flexmix" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-flexmix", "patches": [], "summary": "Flexible Mixture Modeling. A general framework for finite mixtures of\nregression models using the EM algorithm is implemented. The E-step and\nall data handling are provided, while the M-step can be supplied by the\nuser to easily define new models. Existing drivers implement mixtures of\nstandard linear models, generalized linear models and model-based\nclustering.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/flexmix_2.3-14.tar.gz" ], "version": "2.3-14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/flexmix_2.3-15.tar.gz" ], "version": "2.3-15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/flexmix_2.3-17.tar.gz" ], "version": "2.3-17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/flexmix_2.3-18.tar.gz" ], "version": "2.3-18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/flexmix_2.3-19.tar.gz" ], "version": "2.3-19" } ] }, "r-fnn": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/FNN_1.1.4.tar.gz", "https://cloud.r-project.org/src/contrib/FNN_1.1.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/FNN_1.1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/FNN_1.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/FNN_1.1.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/FNN_1.1.tar.gz", "https://cloud.r-project.org/src/contrib/FNN_1.0.tar.gz", "https://cloud.r-project.org/src/contrib/FNN_0.6-4.tar.gz", "https://cloud.r-project.org/src/contrib/FNN_0.6-3.tar.gz", "https://cloud.r-project.org/src/contrib/FNN_0.6-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=FNN" ], "licenses": [], "maintainers": [], "name": "r-fnn", "patches": [], "summary": "Fast Nearest Neighbor Search Algorithms and Applications. Cover-tree and\nkd-tree fast k-nearest neighbor search algorithms and related\napplications including KNN classification, regression and information\nmeasures are implemented.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/FNN_0.6-2.tar.gz" ], "version": "0.6-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/FNN_0.6-3.tar.gz" ], "version": "0.6-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/FNN_0.6-4.tar.gz" ], "version": "0.6-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/FNN_1.0.tar.gz" ], "version": "1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/FNN_1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/FNN_1.1.2.2.tar.gz" ], "version": "1.1.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/FNN_1.1.3.tar.gz" ], "version": "1.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/FNN_1.1.3.1.tar.gz" ], "version": "1.1.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/FNN_1.1.3.2.tar.gz" ], "version": "1.1.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/FNN_1.1.4.tar.gz" ], "version": "1.1.4" } ] }, "r-fontawesome": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-htmltools", "r-rlang" ], "downloads": [ "https://cloud.r-project.org/src/contrib/fontawesome_0.5.2.tar.gz", "https://cloud.r-project.org/src/contrib/fontawesome_0.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/fontawesome_0.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/fontawesome_0.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/fontawesome_0.2.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=fontawesome" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-fontawesome", "patches": [], "summary": "Easily Work with 'Font Awesome' Icons. Easily and flexibly insert 'Font\nAwesome' icons into 'R Markdown' documents and 'Shiny' apps. These icons\ncan be inserted into HTML content through inline 'SVG' tags or 'i' tags.\nThere is also a utility function for exporting 'Font Awesome' icons as\n'PNG' images for those situations where raster graphics are needed.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/fontawesome_0.2.2.tar.gz" ], "version": "0.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fontawesome_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fontawesome_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fontawesome_0.5.1.tar.gz" ], "version": "0.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fontawesome_0.5.2.tar.gz" ], "version": "0.5.2" } ] }, "r-forcats": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-ellipsis", "r-glue", "r-lifecycle", "r-magrittr", "r-rlang", "r-tibble", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/forcats_1.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/forcats_0.5.2.tar.gz", "https://cloud.r-project.org/src/contrib/forcats_0.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/forcats_0.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/forcats_0.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/forcats_0.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/forcats_0.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=forcats" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-forcats", "patches": [], "summary": "Tools for Working with Categorical Variables (Factors). Helpers for\nreordering factor levels (including moving specified levels to front,\nordering by first appearance, reversing, and randomly shuffling), and\ntools for modifying factor levels (including collapsing rare levels into\nother, 'anonymising', and manually 'recoding').\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/forcats_0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/forcats_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/forcats_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/forcats_0.5.0.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/forcats_0.5.1.tar.gz" ], "version": "0.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/forcats_0.5.2.tar.gz" ], "version": "0.5.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/forcats_1.0.0.tar.gz" ], "version": "1.0.0" } ] }, "r-foreach": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-codetools", "r-iterators" ], "downloads": [ "https://cloud.r-project.org/src/contrib/foreach_1.5.2.tar.gz", "https://cloud.r-project.org/src/contrib/foreach_1.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/foreach_1.4.7.tar.gz", "https://cloud.r-project.org/src/contrib/foreach_1.4.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=foreach" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "r-foreach", "patches": [], "summary": "Provides Foreach Looping Construct. Support for the foreach looping\nconstruct. Foreach is an idiom that allows for iterating over elements\nin a collection, without the use of an explicit loop counter. This\npackage in particular is intended to be used for its return value,\nrather than for its side effects. In that sense, it is similar to the\nstandard lapply function, but doesn't require the evaluation of a\nfunction. Using foreach without side effects also facilitates executing\nthe loop in parallel.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/foreach_1.4.3.tar.gz" ], "version": "1.4.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/foreach_1.4.7.tar.gz" ], "version": "1.4.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/foreach_1.5.1.tar.gz" ], "version": "1.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/foreach_1.5.2.tar.gz" ], "version": "1.5.2" } ] }, "r-forecast": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-colorspace", "r-fracdiff", "r-generics", "r-ggplot2", "r-lmtest", "r-magrittr", "r-nnet", "r-rcpp", "r-rcpparmadillo", "r-timedate", "r-tseries", "r-urca", "r-withr", "r-zoo" ], "downloads": [ "https://cloud.r-project.org/src/contrib/forecast_8.23.0.tar.gz", "https://cloud.r-project.org/src/contrib/forecast_8.21.tar.gz", "https://cloud.r-project.org/src/contrib/forecast_8.18.tar.gz", "https://cloud.r-project.org/src/contrib/forecast_8.16.tar.gz", "https://cloud.r-project.org/src/contrib/forecast_8.15.tar.gz", "https://cloud.r-project.org/src/contrib/forecast_8.13.tar.gz", "https://cloud.r-project.org/src/contrib/forecast_8.8.tar.gz", "https://cloud.r-project.org/src/contrib/forecast_8.6.tar.gz", "https://cloud.r-project.org/src/contrib/forecast_8.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=forecast" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-forecast", "patches": [], "summary": "Forecasting Functions for Time Series and Linear Models. Methods and\ntools for displaying and analysing univariate time series forecasts\nincluding exponential smoothing via state space models and automatic\nARIMA modelling.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/forecast_8.13.tar.gz" ], "version": "8.13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/forecast_8.15.tar.gz" ], "version": "8.15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/forecast_8.16.tar.gz" ], "version": "8.16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/forecast_8.18.tar.gz" ], "version": "8.18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/forecast_8.2.tar.gz" ], "version": "8.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/forecast_8.21.tar.gz" ], "version": "8.21" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/forecast_8.23.0.tar.gz" ], "version": "8.23.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/forecast_8.6.tar.gz" ], "version": "8.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/forecast_8.8.tar.gz" ], "version": "8.8" } ] }, "r-foreign": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/foreign_0.8-87.tar.gz", "https://cloud.r-project.org/src/contrib/foreign_0.8-84.tar.gz", "https://cloud.r-project.org/src/contrib/foreign_0.8-83.tar.gz", "https://cloud.r-project.org/src/contrib/foreign_0.8-82.tar.gz", "https://cloud.r-project.org/src/contrib/foreign_0.8-81.tar.gz", "https://cloud.r-project.org/src/contrib/foreign_0.8-72.tar.gz", "https://cloud.r-project.org/src/contrib/foreign_0.8-70.2.tar.gz", "https://cloud.r-project.org/src/contrib/foreign_0.8-66.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=foreign" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-foreign", "patches": [], "summary": "Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat',\n'Weka', 'dBase', ... Reading and writing data stored by some versions of\n'Epi Info', 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka',\nand for reading and writing some 'dBase' files.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/foreign_0.8-66.tar.gz" ], "version": "0.8-66" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/foreign_0.8-70.2.tar.gz" ], "version": "0.8-70.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/foreign_0.8-72.tar.gz" ], "version": "0.8-72" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/foreign_0.8-81.tar.gz" ], "version": "0.8-81" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/foreign_0.8-82.tar.gz" ], "version": "0.8-82" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/foreign_0.8-83.tar.gz" ], "version": "0.8-83" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/foreign_0.8-84.tar.gz" ], "version": "0.8-84" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/foreign_0.8-87.tar.gz" ], "version": "0.8-87" } ] }, "r-formatr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/formatR_1.14.tar.gz", "https://cloud.r-project.org/src/contrib/formatR_1.12.tar.gz", "https://cloud.r-project.org/src/contrib/formatR_1.11.tar.gz", "https://cloud.r-project.org/src/contrib/formatR_1.7.tar.gz", "https://cloud.r-project.org/src/contrib/formatR_1.6.tar.gz", "https://cloud.r-project.org/src/contrib/formatR_1.5.tar.gz", "https://cloud.r-project.org/src/contrib/formatR_1.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=formatR" ], "licenses": [], "maintainers": [], "name": "r-formatr", "patches": [], "summary": "Format R Code Automatically. Provides a function tidy_source() to format\nR source code. Spaces and indent will be added to the code\nautomatically, and comments will be preserved under certain conditions,\nso that R code will be more human-readable and tidy. There is also a\nShiny app as a user interface in this package.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/formatR_1.11.tar.gz" ], "version": "1.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/formatR_1.12.tar.gz" ], "version": "1.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/formatR_1.14.tar.gz" ], "version": "1.14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/formatR_1.4.tar.gz" ], "version": "1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/formatR_1.5.tar.gz" ], "version": "1.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/formatR_1.6.tar.gz" ], "version": "1.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/formatR_1.7.tar.gz" ], "version": "1.7" } ] }, "r-formula": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/Formula_1.2-5.tar.gz", "https://cloud.r-project.org/src/contrib/Formula_1.2-4.tar.gz", "https://cloud.r-project.org/src/contrib/Formula_1.2-3.tar.gz", "https://cloud.r-project.org/src/contrib/Formula_1.2-2.tar.gz", "https://cloud.r-project.org/src/contrib/Formula_1.2-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=Formula" ], "licenses": [], "maintainers": [], "name": "r-formula", "patches": [], "summary": "Extended Model Formulas. Infrastructure for extended formulas with\nmultiple parts on the right-hand side and/or multiple responses on the\nleft-hand side (see ).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/Formula_1.2-1.tar.gz" ], "version": "1.2-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Formula_1.2-2.tar.gz" ], "version": "1.2-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Formula_1.2-3.tar.gz" ], "version": "1.2-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Formula_1.2-4.tar.gz" ], "version": "1.2-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Formula_1.2-5.tar.gz" ], "version": "1.2-5" } ] }, "r-fpc": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-class", "r-cluster", "r-diptest", "r-flexmix", "r-kernlab", "r-mass", "r-mclust", "r-mvtnorm", "r-prabclus", "r-robustbase", "r-trimcluster" ], "downloads": [ "https://cloud.r-project.org/src/contrib/fpc_2.2-12.tar.gz", "https://cloud.r-project.org/src/contrib/fpc_2.2-10.tar.gz", "https://cloud.r-project.org/src/contrib/fpc_2.2-9.tar.gz", "https://cloud.r-project.org/src/contrib/fpc_2.2-3.tar.gz", "https://cloud.r-project.org/src/contrib/fpc_2.2-2.tar.gz", "https://cloud.r-project.org/src/contrib/fpc_2.1-10.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=fpc" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-fpc", "patches": [], "summary": "Flexible Procedures for Clustering. Various methods for clustering and\ncluster validation. Fixed point clustering. Linear regression\nclustering. Clustering by merging Gaussian mixture components. Symmetric\nand asymmetric discriminant projections for visualisation of the\nseparation of groupings. Cluster validation statistics for distance\nbased clustering including corrected Rand index. Standardisation of\ncluster validation statistics by random clusterings and comparison\nbetween many clustering methods and numbers of clusters based on this.\nCluster-wise cluster stability assessment. Methods for estimation of the\nnumber of clusters: Calinski-Harabasz, Tibshirani and Walther's\nprediction strength, Fang and Wang's bootstrap stability.\nGaussian/multinomial mixture fitting for mixed continuous/categorical\nvariables. Variable-wise statistics for cluster interpretation. DBSCAN\nclustering. Interface functions for many clustering methods implemented\nin R, including estimating the number of clusters with kmeans, pam and\nclara. Modality diagnosis for Gaussian mixtures. For an overview see\npackage?fpc.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/fpc_2.1-10.tar.gz" ], "version": "2.1-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fpc_2.2-10.tar.gz" ], "version": "2.2-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fpc_2.2-12.tar.gz" ], "version": "2.2-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fpc_2.2-2.tar.gz" ], "version": "2.2-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fpc_2.2-3.tar.gz" ], "version": "2.2-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fpc_2.2-9.tar.gz" ], "version": "2.2-9" } ] }, "r-fpcompare": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/fpCompare_0.2.4.tar.gz", "https://cloud.r-project.org/src/contrib/fpCompare_0.2.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=fpCompare" ], "licenses": [], "maintainers": [ "dorton21" ], "name": "r-fpcompare", "patches": [], "summary": "Reliable Comparison of Floating Point Numbers. Comparisons of floating\npoint numbers are problematic due to errors associated with the binary\nrepresentation of decimal numbers. Despite being aware of these\nproblems, people still use numerical methods that fail to account for\nthese and other rounding errors (this pitfall is the first to be\nhighlighted in Circle 1 of Burns (2012) 'The R Inferno'\n). This package\nprovides new relational operators useful for performing floating point\nnumber comparisons with a set tolerance.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/fpCompare_0.2.3.tar.gz" ], "version": "0.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fpCompare_0.2.4.tar.gz" ], "version": "0.2.4" } ] }, "r-fracdiff": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/fracdiff_1.5-3.tar.gz", "https://cloud.r-project.org/src/contrib/fracdiff_1.5-2.tar.gz", "https://cloud.r-project.org/src/contrib/fracdiff_1.5-1.tar.gz", "https://cloud.r-project.org/src/contrib/fracdiff_1.4-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=fracdiff" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-fracdiff", "patches": [], "summary": "Fractionally Differenced ARIMA aka ARFIMA(P,d,q) Models. Maximum\nlikelihood estimation of the parameters of a fractionally differenced\nARIMA(p,d,q) model (Haslett and Raftery, Appl.Statistics, 1989);\nincluding inference and basic methods. Some alternative algorithms to\nestimate \"H\".\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/fracdiff_1.4-2.tar.gz" ], "version": "1.4-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fracdiff_1.5-1.tar.gz" ], "version": "1.5-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fracdiff_1.5-2.tar.gz" ], "version": "1.5-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fracdiff_1.5-3.tar.gz" ], "version": "1.5-3" } ] }, "r-fs": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/fs_1.6.4.tar.gz", "https://cloud.r-project.org/src/contrib/fs_1.6.2.tar.gz", "https://cloud.r-project.org/src/contrib/fs_1.5.2.tar.gz", "https://cloud.r-project.org/src/contrib/fs_1.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/fs_1.3.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=fs" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-fs", "patches": [], "summary": "Cross-Platform File System Operations Based on 'libuv'. A cross-platform\ninterface to file system operations, built on top of the 'libuv' C\nlibrary.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/fs_1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fs_1.5.0.tar.gz" ], "version": "1.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fs_1.5.2.tar.gz" ], "version": "1.5.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fs_1.6.2.tar.gz" ], "version": "1.6.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/fs_1.6.4.tar.gz" ], "version": "1.6.4" } ] }, "r-functional": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/functional_0.6.tar.gz", "https://cloud.r-project.org/src/contrib/functional_0.4.tar.gz", "https://cloud.r-project.org/src/contrib/functional_0.2.tar.gz", "https://cloud.r-project.org/src/contrib/functional_0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=functional" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [ "jgaeb" ], "name": "r-functional", "patches": [], "summary": "Curry, Compose, and other higher-order functions Curry, Compose, and\nother higher-order functions\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/functional_0.1.tar.gz" ], "version": "0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/functional_0.2.tar.gz" ], "version": "0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/functional_0.4.tar.gz" ], "version": "0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/functional_0.6.tar.gz" ], "version": "0.6" } ] }, "r-furrr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ellipsis", "r-future", "r-globals", "r-lifecycle", "r-purrr", "r-rlang", "r-vctrs" ], "downloads": [ "https://cloud.r-project.org/src/contrib/furrr_0.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/furrr_0.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/furrr_0.2.3.tar.gz", "https://cloud.r-project.org/src/contrib/furrr_0.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/furrr_0.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/furrr_0.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/furrr_0.1.0.tar.gz", null ], "homepages": [ "https://furrr.futureverse.org" ], "licenses": [ "MIT" ], "maintainers": [ "jgaeb" ], "name": "r-furrr", "patches": [], "summary": "Apply Mapping Functions in Parallel using Futures Implementations of the\nfamily of map() functions from 'purrr' that can be resolved using any\n'future'-supported backend, e.g. parallel on the local machine or\ndistributed on a compute cluster.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/furrr_0.1.0.tar.gz" ], "version": "0.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/furrr_0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/furrr_0.2.1.tar.gz" ], "version": "0.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/furrr_0.2.2.tar.gz" ], "version": "0.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/furrr_0.2.3.tar.gz" ], "version": "0.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/furrr_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/furrr_0.3.1.tar.gz" ], "version": "0.3.1" } ] }, "r-futile-logger": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-futile-options", "r-lambda-r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/futile.logger_1.4.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=futile.logger" ], "licenses": [], "maintainers": [], "name": "r-futile-logger", "patches": [], "summary": "A Logging Utility for R. Provides a simple yet powerful logging utility.\nBased loosely on log4j, futile.logger takes advantage of R idioms to\nmake logging a convenient and easy to use replacement for cat and print\nstatements.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/futile.logger_1.4.3.tar.gz" ], "version": "1.4.3" } ] }, "r-futile-options": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/futile.options_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/futile.options_1.0.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=futile.options" ], "licenses": [], "maintainers": [], "name": "r-futile-options", "patches": [], "summary": "Futile Options Management. A scoped options management framework.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/futile.options_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/futile.options_1.0.1.tar.gz" ], "version": "1.0.1" } ] }, "r-future": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-digest", "r-globals", "r-listenv", "r-parallelly" ], "downloads": [ "https://cloud.r-project.org/src/contrib/future_1.34.0.tar.gz", "https://cloud.r-project.org/src/contrib/future_1.32.0.tar.gz", "https://cloud.r-project.org/src/contrib/future_1.29.0.tar.gz", "https://cloud.r-project.org/src/contrib/future_1.28.0.tar.gz", "https://cloud.r-project.org/src/contrib/future_1.26.1.tar.gz", "https://cloud.r-project.org/src/contrib/future_1.24.0.tar.gz", "https://cloud.r-project.org/src/contrib/future_1.23.0.tar.gz", "https://cloud.r-project.org/src/contrib/future_1.22.1.tar.gz", "https://cloud.r-project.org/src/contrib/future_1.21.0.tar.gz", "https://cloud.r-project.org/src/contrib/future_1.14.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=future" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "r-future", "patches": [], "summary": "Unified Parallel and Distributed Processing in R for Everyone. The\npurpose of this package is to provide a lightweight and unified Future\nAPI for sequential and parallel processing of R expression via futures.\nThe simplest way to evaluate an expression in parallel is to use 'x %<-%\n{ expression }' with 'plan(multiprocess)'. This package implements\nsequential, multicore, multisession, and cluster futures. With these, R\nexpressions can be evaluated on the local machine, in parallel a set of\nlocal machines, or distributed on a mix of local and remote machines.\nExtensions to this package implement additional backends for processing\nfutures via compute cluster schedulers etc. Because of its unified API,\nthere is no need to modify any code in order switch from sequential on\nthe local machine to, say, distributed processing on a remote compute\ncluster. Another strength of this package is that global variables and\nfunctions are automatically identified and exported as needed, making it\nstraightforward to tweak existing code to make use of futures.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/future_1.14.0.tar.gz" ], "version": "1.14.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/future_1.21.0.tar.gz" ], "version": "1.21.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/future_1.22.1.tar.gz" ], "version": "1.22.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/future_1.23.0.tar.gz" ], "version": "1.23.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/future_1.24.0.tar.gz" ], "version": "1.24.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/future_1.26.1.tar.gz" ], "version": "1.26.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/future_1.28.0.tar.gz" ], "version": "1.28.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/future_1.29.0.tar.gz" ], "version": "1.29.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/future_1.32.0.tar.gz" ], "version": "1.32.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/future_1.34.0.tar.gz" ], "version": "1.34.0" } ] }, "r-future-apply": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-future", "r-globals" ], "downloads": [ "https://cloud.r-project.org/src/contrib/future.apply_1.11.2.tar.gz", "https://cloud.r-project.org/src/contrib/future.apply_1.10.0.tar.gz", "https://cloud.r-project.org/src/contrib/future.apply_1.9.1.tar.gz", "https://cloud.r-project.org/src/contrib/future.apply_1.9.0.tar.gz", "https://cloud.r-project.org/src/contrib/future.apply_1.8.1.tar.gz", "https://cloud.r-project.org/src/contrib/future.apply_1.7.0.tar.gz", "https://cloud.r-project.org/src/contrib/future.apply_1.3.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=future.apply" ], "licenses": [], "maintainers": [], "name": "r-future-apply", "patches": [], "summary": "Apply Function to Elements in Parallel using Futures. Implementations of\napply(), by(), eapply(), lapply(), Map(), mapply(), replicate(),\nsapply(), tapply(), and vapply() that can be resolved using any future-\nsupported backend, e.g. parallel on the local machine or distributed on\na compute cluster. These future_*apply() functions come with the same\npros and cons as the corresponding base-R *apply() functions but with\nthe additional feature of being able to be processed via the future\nframework.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/future.apply_1.10.0.tar.gz" ], "version": "1.10.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/future.apply_1.11.2.tar.gz" ], "version": "1.11.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/future.apply_1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/future.apply_1.7.0.tar.gz" ], "version": "1.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/future.apply_1.8.1.tar.gz" ], "version": "1.8.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/future.apply_1.9.0.tar.gz" ], "version": "1.9.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/future.apply_1.9.1.tar.gz" ], "version": "1.9.1" } ] }, "r-gamlss": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-gamlss-data", "r-gamlss-dist", "r-mass", "r-nlme", "r-survival" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss_5.4-22.tar.gz", "https://cloud.r-project.org/src/contrib/gamlss_5.4-12.tar.gz", "https://cloud.r-project.org/src/contrib/gamlss_5.4-3.tar.gz", "https://cloud.r-project.org/src/contrib/gamlss_5.3-4.tar.gz", "https://cloud.r-project.org/src/contrib/gamlss_5.2-0.tar.gz", "https://cloud.r-project.org/src/contrib/gamlss_5.1-4.tar.gz", "https://cloud.r-project.org/src/contrib/gamlss_5.1-3.tar.gz", "https://cloud.r-project.org/src/contrib/gamlss_5.1-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gamlss" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-gamlss", "patches": [], "summary": "Generalised Additive Models for Location Scale and Shape. Functions for\nfitting the Generalized Additive Models for Location Scale and Shape\nintroduced by Rigby and Stasinopoulos (2005),\n. The models use a distributional\nregression approach where all the parameters of the conditional\ndistribution of the response variable are modelled using explanatory\nvariables.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss_5.1-2.tar.gz" ], "version": "5.1-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss_5.1-3.tar.gz" ], "version": "5.1-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss_5.1-4.tar.gz" ], "version": "5.1-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss_5.2-0.tar.gz" ], "version": "5.2-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss_5.3-4.tar.gz" ], "version": "5.3-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss_5.4-12.tar.gz" ], "version": "5.4-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss_5.4-22.tar.gz" ], "version": "5.4-22" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss_5.4-3.tar.gz" ], "version": "5.4-3" } ] }, "r-gamlss-data": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss.data_6.0-6.tar.gz", "https://cloud.r-project.org/src/contrib/gamlss.data_6.0-2.tar.gz", "https://cloud.r-project.org/src/contrib/gamlss.data_5.1-4.tar.gz", "https://cloud.r-project.org/src/contrib/gamlss.data_5.1-3.tar.gz", "https://cloud.r-project.org/src/contrib/gamlss.data_5.1-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gamlss.data" ], "licenses": [], "maintainers": [], "name": "r-gamlss-data", "patches": [], "summary": "GAMLSS Data. Data used as examples in the current two books on\nGeneralised Additive Models for Location Scale and Shape introduced by\nRigby and Stasinopoulos (2005), .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss.data_5.1-0.tar.gz" ], "version": "5.1-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss.data_5.1-3.tar.gz" ], "version": "5.1-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss.data_5.1-4.tar.gz" ], "version": "5.1-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss.data_6.0-2.tar.gz" ], "version": "6.0-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss.data_6.0-6.tar.gz" ], "version": "6.0-6" } ] }, "r-gamlss-dist": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-mass" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss.dist_6.1-1.tar.gz", "https://cloud.r-project.org/src/contrib/gamlss.dist_6.0-5.tar.gz", "https://cloud.r-project.org/src/contrib/gamlss.dist_6.0-3.tar.gz", "https://cloud.r-project.org/src/contrib/gamlss.dist_6.0-1.tar.gz", "https://cloud.r-project.org/src/contrib/gamlss.dist_5.1-7.tar.gz", "https://cloud.r-project.org/src/contrib/gamlss.dist_5.1-4.tar.gz", "https://cloud.r-project.org/src/contrib/gamlss.dist_5.1-3.tar.gz", "https://cloud.r-project.org/src/contrib/gamlss.dist_5.1-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gamlss.dist" ], "licenses": [], "maintainers": [], "name": "r-gamlss-dist", "patches": [], "summary": "Distributions for Generalized Additive Models for Location Scale and\nShape. A set of distributions which can be used for modelling the\nresponse variables in Generalized Additive Models for Location Scale and\nShape, Rigby and Stasinopoulos (2005),\n. The distributions can be\ncontinuous, discrete or mixed distributions. Extra distributions can be\ncreated, by transforming, any continuous distribution defined on the\nreal line, to a distribution defined on ranges 0 to infinity or 0 to 1,\nby using a ''log'' or a ''logit' transformation respectively.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss.dist_5.1-1.tar.gz" ], "version": "5.1-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss.dist_5.1-3.tar.gz" ], "version": "5.1-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss.dist_5.1-4.tar.gz" ], "version": "5.1-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss.dist_5.1-7.tar.gz" ], "version": "5.1-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss.dist_6.0-1.tar.gz" ], "version": "6.0-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss.dist_6.0-3.tar.gz" ], "version": "6.0-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss.dist_6.0-5.tar.gz" ], "version": "6.0-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gamlss.dist_6.1-1.tar.gz" ], "version": "6.1-1" } ] }, "r-gamm4": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-lme4", "r-matrix", "r-mgcv" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gamm4_0.2-6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gamm4" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-gamm4", "patches": [], "summary": "Generalized Additive Mixed Models using 'mgcv' and 'lme4'. Estimate\ngeneralized additive mixed models via a version of function gamm() from\n'mgcv', using 'lme4' for estimation.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gamm4_0.2-6.tar.gz" ], "version": "0.2-6" } ] }, "r-gargle": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-fs", "r-glue", "r-httr", "r-jsonlite", "r-lifecycle", "r-openssl", "r-rappdirs", "r-rlang", "r-rstudioapi", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gargle_1.5.2.tar.gz", "https://cloud.r-project.org/src/contrib/gargle_1.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/gargle_1.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/gargle_1.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gargle" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-gargle", "patches": [], "summary": "Utilities for Working with Google APIs. Provides utilities for working\nwith Google APIs . This\nincludes functions and classes for handling common credential types and\nfor preparing, executing, and processing HTTP requests.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gargle_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gargle_1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gargle_1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gargle_1.5.2.tar.gz" ], "version": "1.5.2" } ] }, "r-gbm": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-gridextra", "r-lattice", "r-survival" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gbm_2.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/gbm_2.1.8.1.tar.gz", "https://cloud.r-project.org/src/contrib/gbm_2.1.8.tar.gz", "https://cloud.r-project.org/src/contrib/gbm_2.1.5.tar.gz", "https://cloud.r-project.org/src/contrib/gbm_2.1.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gbm" ], "licenses": [ "GPL-2.0-or-later OR custom" ], "maintainers": [], "name": "r-gbm", "patches": [], "summary": "Generalized Boosted Regression Models. An implementation of extensions\nto Freund and Schapire's AdaBoost algorithm and Friedman's gradient\nboosting machine. Includes regression methods for least squares,\nabsolute loss, t-distribution loss, quantile regression, logistic,\nmultinomial logistic, Poisson, Cox proportional hazards partial\nlikelihood, AdaBoost exponential loss, Huberized hinge loss, and\nLearning to Rank measures (LambdaMart). Originally developed by Greg\nRidgeway.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gbm_2.1.3.tar.gz" ], "version": "2.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gbm_2.1.5.tar.gz" ], "version": "2.1.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gbm_2.1.8.tar.gz" ], "version": "2.1.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gbm_2.1.8.1.tar.gz" ], "version": "2.1.8.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gbm_2.2.2.tar.gz" ], "version": "2.2.2" } ] }, "r-gbrd": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gbRd_0.4.12.tar.gz", "https://cloud.r-project.org/src/contrib/gbRd_0.4-11.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gbRd" ], "licenses": [], "maintainers": [], "name": "r-gbrd", "patches": [], "summary": "Utilities for processing Rd objects and files. Provides utilities for\nprocessing Rd objects and files. Extract argument descriptions and other\nparts of the help pages of functions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gbRd_0.4-11.tar.gz" ], "version": "0.4-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gbRd_0.4.12.tar.gz" ], "version": "0.4.12" } ] }, "r-gcrma": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-affy", "r-affyio", "r-biobase", "r-biocinstaller", "r-biocmanager", "r-biostrings", "r-xvector" ], "downloads": [ "https://git.bioconductor.org/packages/gcrma" ], "homepages": [ "https://bioconductor.org/packages/gcrma" ], "licenses": [], "maintainers": [], "name": "r-gcrma", "patches": [], "summary": "Background Adjustment Using Sequence Information. Background adjustment\nusing sequence information.\n", "version": [ { "repositories": [ { "commit": "3ea0eb0b5c15ffb24df76620667ae7996ed715b4", "type": "git", "url": "https://git.bioconductor.org/packages/gcrma" } ], "version": "2.48.0" }, { "repositories": [ { "commit": "cbba460d131e1073059500b8d7b168a78f963992", "type": "git", "url": "https://git.bioconductor.org/packages/gcrma" } ], "version": "2.50.0" }, { "repositories": [ { "commit": "d6e90b05432d2a8b0583d3fed001811ecdf49d7d", "type": "git", "url": "https://git.bioconductor.org/packages/gcrma" } ], "version": "2.52.0" }, { "repositories": [ { "commit": "9515fdbbc766a2a3b2ec61cf530c57bbded77ccc", "type": "git", "url": "https://git.bioconductor.org/packages/gcrma" } ], "version": "2.54.0" }, { "repositories": [ { "commit": "1f37bbfb4d3ed542b1e90704ab0fa8914d5e0224", "type": "git", "url": "https://git.bioconductor.org/packages/gcrma" } ], "version": "2.56.0" }, { "repositories": [ { "commit": "b91bdf5bf4e875defedb4d4e3e1e75867773287a", "type": "git", "url": "https://git.bioconductor.org/packages/gcrma" } ], "version": "2.62.0" }, { "repositories": [ { "commit": "ba134b392def89d36b5639a187e0c25a4353457b", "type": "git", "url": "https://git.bioconductor.org/packages/gcrma" } ], "version": "2.66.0" }, { "repositories": [ { "commit": "c14063ff5490fac8d60530826613d728e68b3d66", "type": "git", "url": "https://git.bioconductor.org/packages/gcrma" } ], "version": "2.68.0" }, { "repositories": [ { "commit": "095f38914525d8812524a3cb38db8075382f8121", "type": "git", "url": "https://git.bioconductor.org/packages/gcrma" } ], "version": "2.70.0" }, { "repositories": [ { "commit": "5cfccc7c684283dc3a82830bad75aad254efcb01", "type": "git", "url": "https://git.bioconductor.org/packages/gcrma" } ], "version": "2.72.0" } ] }, "r-gdalutilities": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-sf" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gdalUtilities_1.2.5.tar.gz", "https://cloud.r-project.org/src/contrib/gdalUtilities_1.2.4.tar.gz", "https://cloud.r-project.org/src/contrib/gdalUtilities_1.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/gdalUtilities_1.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gdalUtilities" ], "licenses": [], "maintainers": [], "name": "r-gdalutilities", "patches": [], "summary": "Wrappers for 'GDAL' Utilities Executables. R's 'sf' package ships with\nself-contained 'GDAL' executables, including a bare bones interface to\nseveral 'GDAL'-related utility programs collectively known as the 'GDAL\nutilities'. For each of those utilities, this package provides an R\nwrapper whose formal arguments closely mirror those of the 'GDAL'\ncommand line interface. The utilities operate on data stored in files\nand typically write their output to other files. Therefore, to process\ndata stored in any of R's more common spatial formats (i.e. those\nsupported by the 'sp', 'sf', and 'raster' packages), first write them to\ndisk, then process them with the package's wrapper functions before\nreading the outputted results back into R. GDAL function arguments\nintroduced in GDAL version 3.2.1 or earlier are supported.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gdalUtilities_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gdalUtilities_1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gdalUtilities_1.2.4.tar.gz" ], "version": "1.2.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gdalUtilities_1.2.5.tar.gz" ], "version": "1.2.5" } ] }, "r-gdalutils": { "alias": [], "categories": [], "dependencies": [ "gdal", "gmake", "r", "r-foreach", "r-r-utils", "r-raster", "r-rgdal", "r-sp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gdalUtils_2.0.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/gdalUtils_2.0.1.14.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gdalUtils" ], "licenses": [], "maintainers": [], "name": "r-gdalutils", "patches": [], "summary": "Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gdalUtils_2.0.1.14.tar.gz" ], "version": "2.0.1.14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gdalUtils_2.0.3.2.tar.gz" ], "version": "2.0.3.2" } ] }, "r-gdata": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "r", "r-gtools" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gdata_3.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/gdata_2.18.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/gdata_2.18.0.tar.gz", "https://cloud.r-project.org/src/contrib/gdata_2.17.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gdata" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-gdata", "patches": [], "summary": "Various R Programming Tools for Data Manipulation. Various R programming\ntools for data manipulation, including: [1] medical unit conversions\n('ConvertMedUnits', 'MedUnits'), [2] combining objects ('bindData',\n'cbindX', 'combine', 'interleave'), [3] character vector operations\n('centerText', 'startsWith', 'trim'), [4] factor manipulation ('levels',\n'reorder.factor', 'mapLevels'), [5] obtaining information about R\nobjects ('object.size', 'elem', 'env', 'humanReadable', 'is.what', 'll',\n'keep', 'ls.funs', 'Args','nPairs', 'nobs'), [6] manipulating MS-Excel\nformatted files ('read.xls', 'installXLSXsupport', 'sheetCount',\n'xlsFormats'), [7] generating fixed-width format files ('write.fwf'),\n[8] extricating components of date & time objects ('getYear',\n'getMonth', 'getDay', 'getHour', 'getMin', 'getSec'), [9] operations on\ncolumns of data frames ('matchcols', 'rename.vars'), [10] matrix\noperations ('unmatrix', 'upperTriangle', 'lowerTriangle'), [11]\noperations on vectors ('case', 'unknownToNA', 'duplicated2', 'trimSum'),\n[12] operations on data frames ('frameApply', 'wideByFactor'), [13]\nvalue of last evaluated expression ('ans'), and [14] wrapper for\n'sample' that ensures consistent behavior for both scalar and vector\narguments ('resample').\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gdata_2.17.0.tar.gz" ], "version": "2.17.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gdata_2.18.0.tar.gz" ], "version": "2.18.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gdata_2.18.0.1.tar.gz" ], "version": "2.18.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gdata_3.0.0.tar.gz" ], "version": "3.0.0" } ] }, "r-gdsfmt": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r" ], "downloads": [ "https://git.bioconductor.org/packages/gdsfmt" ], "homepages": [ "https://bioconductor.org/packages/gdsfmt" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "r-gdsfmt", "patches": [], "summary": "R Interface to CoreArray Genomic Data Structure (GDS) Files. This\npackage provides a high-level R interface to CoreArray Genomic Data\nStructure (GDS) data files, which are portable across platforms with\nhierarchical structure to store multiple scalable array-oriented data\nsets with metadata information. It is suited for large-scale datasets,\nespecially for data which are much larger than the available random-\naccess memory. The gdsfmt package offers the efficient operations\nspecifically designed for integers of less than 8 bits, since a diploid\ngenotype, like single-nucleotide polymorphism (SNP), usually occupies\nfewer bits than a byte. Data compression and decompression are available\nwith relatively efficient random access. 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Qhull does not support constrained\nDelaunay triangulations, or mesh generation of non-convex objects, but\nthe package does include some R functions that allow for this.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/geometry_0.4.6.tar.gz" ], "version": "0.4.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/geometry_0.4.6.1.tar.gz" ], "version": "0.4.6.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/geometry_0.4.7.tar.gz" ], "version": "0.4.7" } ] }, "r-geomorph": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ape", "r-geiger", "r-ggplot2", "r-jpeg", "r-matrix", "r-rgl", "r-rrpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/geomorph_4.0.8.tar.gz", "https://cloud.r-project.org/src/contrib/geomorph_4.0.5.tar.gz", "https://cloud.r-project.org/src/contrib/geomorph_4.0.4.tar.gz", "https://cloud.r-project.org/src/contrib/geomorph_4.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/geomorph_4.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/geomorph_3.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/geomorph_3.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/geomorph_3.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/geomorph_3.0.7.tar.gz", "https://cloud.r-project.org/src/contrib/geomorph_3.0.5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=geomorph" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-geomorph", "patches": [], "summary": "Geometric Morphometric Analyses of 2D/3D Landmark Data. Read,\nmanipulate, and digitize landmark data, generate shape variables via\nProcrustes analysis for points, curves and surfaces, perform shape\nanalyses, and provide graphical depictions of shapes and patterns of\nshape variation.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/geomorph_3.0.5.tar.gz" ], "version": "3.0.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/geomorph_3.0.7.tar.gz" ], "version": "3.0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/geomorph_3.1.1.tar.gz" ], "version": "3.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/geomorph_3.1.2.tar.gz" ], "version": "3.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/geomorph_3.3.2.tar.gz" ], "version": "3.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/geomorph_4.0.1.tar.gz" ], "version": "4.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/geomorph_4.0.3.tar.gz" ], "version": "4.0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/geomorph_4.0.4.tar.gz" ], "version": "4.0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/geomorph_4.0.5.tar.gz" ], "version": "4.0.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/geomorph_4.0.8.tar.gz" ], "version": "4.0.8" } ] }, "r-geonames": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-rjson" ], "downloads": [ "https://cloud.r-project.org/src/contrib/geonames_0.999.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=geonames" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-geonames", "patches": [], "summary": "Interface to the \"Geonames\" Spatial Query Web Service. The web service\nat provides a number of spatial data\nqueries, including administrative area hierarchies, city locations and\nsome country postal code queries. A (free) username is required and rate\nlimits exist.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/geonames_0.999.tar.gz" ], "version": "0.999" } ] }, "r-geoquery": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-biobase", "r-curl", "r-data-table", "r-dplyr", "r-httr", "r-limma", "r-magrittr", "r-r-utils", "r-rcurl", "r-readr", "r-tidyr", "r-xml", "r-xml2" ], "downloads": [ "https://git.bioconductor.org/packages/GEOquery" ], "homepages": [ "https://bioconductor.org/packages/GEOquery" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-geoquery", "patches": [], "summary": "Get data from NCBI Gene Expression Omnibus (GEO). The NCBI Gene\nExpression Omnibus (GEO) is a public repository of microarray data.\nGiven the rich and varied nature of this resource, it is only natural to\nwant to apply BioConductor tools to these data. 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Geostatistical analysis including\nvariogram-based, likelihood-based and Bayesian methods. Software\ncompanion for Diggle and Ribeiro (2007) .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/geoR_1.7-5.2.1.tar.gz" ], "version": "1.7-5.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/geoR_1.8-1.tar.gz" ], "version": "1.8-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/geoR_1.9-2.tar.gz" ], "version": "1.9-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/geoR_1.9-4.tar.gz" ], "version": "1.9-4" } ] }, "r-geosphere": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-rcpp", "r-sp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/geosphere_1.5-18.tar.gz", "https://cloud.r-project.org/src/contrib/geosphere_1.5-14.tar.gz", "https://cloud.r-project.org/src/contrib/geosphere_1.5-10.tar.gz", "https://cloud.r-project.org/src/contrib/geosphere_1.5-7.tar.gz", "https://cloud.r-project.org/src/contrib/geosphere_1.5-5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=geosphere" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-geosphere", "patches": [], "summary": "Spherical Trigonometry. Spherical trigonometry for geographic\napplications. That is, compute distances and related measures for\nangular (longitude/latitude) locations.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/geosphere_1.5-10.tar.gz" ], "version": "1.5-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/geosphere_1.5-14.tar.gz" ], "version": "1.5-14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/geosphere_1.5-18.tar.gz" ], "version": "1.5-18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/geosphere_1.5-5.tar.gz" ], "version": "1.5-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/geosphere_1.5-7.tar.gz" ], "version": "1.5-7" } ] }, "r-gert": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "libgit2", "r", "r-askpass", "r-credentials", "r-openssl", "r-rstudioapi", "r-sys", "r-zip" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gert_2.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/gert_1.9.2.tar.gz", "https://cloud.r-project.org/src/contrib/gert_1.9.1.tar.gz", "https://cloud.r-project.org/src/contrib/gert_1.6.0.tar.gz", "https://cloud.r-project.org/src/contrib/gert_1.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/gert_1.0.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gert" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-gert", "patches": [], "summary": "Simple Git Client for R. Simple git client for R based on 'libgit2' with\nsupport for SSH and HTTPS remotes. All functions in 'gert' use basic R\ndata types (such as vectors and data-frames) for their arguments and\nreturn values. User credentials are shared with command line 'git'\nthrough the git-credential store and ssh keys stored on disk or ssh-\nagent.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gert_1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gert_1.5.0.tar.gz" ], "version": "1.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gert_1.6.0.tar.gz" ], "version": "1.6.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gert_1.9.1.tar.gz" ], "version": "1.9.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gert_1.9.2.tar.gz" ], "version": "1.9.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gert_2.1.1.tar.gz" ], "version": "2.1.1" } ] }, "r-getopt": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/getopt_1.20.4.tar.gz", "https://cloud.r-project.org/src/contrib/getopt_1.20.3.tar.gz", "https://cloud.r-project.org/src/contrib/getopt_1.20.2.tar.gz", "https://cloud.r-project.org/src/contrib/getopt_1.20.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=getopt" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-getopt", "patches": [], "summary": "C-Like 'getopt' Behavior. Package designed to be used with Rscript to\nwrite \"#!\" shebang scripts that accept short and long flags/options.\nMany users will prefer using instead the packages optparse or argparse\nwhich add extra features like automatically generated help option and\nusage, support for default values, positional argument support, etc.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/getopt_1.20.1.tar.gz" ], "version": "1.20.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/getopt_1.20.2.tar.gz" ], "version": "1.20.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/getopt_1.20.3.tar.gz" ], "version": "1.20.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/getopt_1.20.4.tar.gz" ], "version": "1.20.4" } ] }, "r-getoptlong": { "alias": [], "categories": [], "dependencies": [ "gmake", "perl", "r", "r-crayon", "r-globaloptions", "r-rjson" ], "downloads": [ "https://cloud.r-project.org/src/contrib/GetoptLong_1.0.5.tar.gz", "https://cloud.r-project.org/src/contrib/GetoptLong_0.1.7.tar.gz", "https://cloud.r-project.org/src/contrib/GetoptLong_0.1.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=GetoptLong" ], "licenses": [], "maintainers": [], "name": "r-getoptlong", "patches": [], "summary": "Parsing Command-Line Arguments and Simple Variable Interpolation. This\nis yet another command-line argument parser which wraps the powerful\nPerl module Getopt::Long and with some adaptation for easier use in R.\nIt also provides a simple way for variable interpolation in R.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/GetoptLong_0.1.6.tar.gz" ], "version": "0.1.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GetoptLong_0.1.7.tar.gz" ], "version": "0.1.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GetoptLong_1.0.5.tar.gz" ], "version": "1.0.5" } ] }, "r-ggally": { "alias": [], "categories": [], "dependencies": [ "gmake", "openssl", "r", "r-dplyr", "r-forcats", "r-ggplot2", "r-ggstats", "r-gtable", "r-lifecycle", "r-magrittr", "r-plyr", "r-progress", "r-rcolorbrewer", "r-reshape", "r-rlang", "r-scales", "r-tidyr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/GGally_2.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/GGally_2.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/GGally_2.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/GGally_1.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/GGally_1.3.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=GGally" ], "licenses": [], "maintainers": [], "name": "r-ggally", "patches": [], "summary": "Extension to 'ggplot2'. The R package 'ggplot2' is a plotting system\nbased on the grammar of graphics. 'GGally' extends 'ggplot2' by adding\nseveral functions to reduce the complexity of combining geometric\nobjects with transformed data. Some of these functions include a\npairwise plot matrix, a two group pairwise plot matrix, a parallel\ncoordinates plot, a survival plot, and several functions to plot\nnetworks.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/GGally_1.3.2.tar.gz" ], "version": "1.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GGally_1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GGally_2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GGally_2.1.2.tar.gz" ], "version": "2.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GGally_2.2.1.tar.gz" ], "version": "2.2.1" } ] }, "r-ggbeeswarm": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-beeswarm", "r-cli", "r-ggplot2", "r-lifecycle", "r-vipor" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ggbeeswarm_0.7.2.tar.gz", "https://cloud.r-project.org/src/contrib/ggbeeswarm_0.7.1.tar.gz", "https://cloud.r-project.org/src/contrib/ggbeeswarm_0.6.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ggbeeswarm" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-ggbeeswarm", "patches": [], "summary": "Categorical Scatter (Violin Point) Plots. Provides two methods of\nplotting categorical scatter plots such that the arrangement of points\nwithin a category reflects the density of data at that region, and\navoids over-plotting.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ggbeeswarm_0.6.0.tar.gz" ], "version": "0.6.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggbeeswarm_0.7.1.tar.gz" ], "version": "0.7.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggbeeswarm_0.7.2.tar.gz" ], "version": "0.7.2" } ] }, "r-ggbio": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotationdbi", "r-annotationfilter", "r-biobase", "r-biocgenerics", "r-biostrings", "r-biovizbase", "r-bsgenome", "r-ensembldb", "r-genomeinfodb", "r-genomicalignments", "r-genomicfeatures", "r-genomicranges", "r-ggally", "r-ggplot2", "r-gridextra", "r-gtable", "r-hmisc", "r-iranges", "r-organismdbi", "r-reshape2", "r-rlang", "r-rsamtools", "r-rtracklayer", "r-s4vectors", "r-scales", "r-summarizedexperiment", "r-variantannotation" ], "downloads": [ "https://git.bioconductor.org/packages/ggbio" ], "homepages": [ "https://bioconductor.org/packages/ggbio" ], "licenses": [], "maintainers": [], "name": "r-ggbio", "patches": [], "summary": "Visualization tools for genomic data. The ggbio package extends and\nspecializes the grammar of graphics for biological data. The graphics\nare designed to answer common scientific questions, in particular those\noften asked of high throughput genomics data. All core Bioconductor data\nstructures are supported, where appropriate. The package supports\ndetailed views of particular genomic regions, as well as genome-wide\noverviews. Supported overviews include ideograms and grand linear views.\nHigh-level plots include sequence fragment length, edge-linked interval\nto data view, mismatch pileup, and several splicing summaries.\n", "version": [ { "repositories": [ { "commit": "ef04c1bca1330f37152bcc21080cbde94849a094", "type": "git", "url": "https://git.bioconductor.org/packages/ggbio" } ], "version": "1.24.1" }, { "repositories": [ { "commit": "b4f4c898c92aa1082aa7574f1e5c2a0dae943fbc", "type": "git", "url": "https://git.bioconductor.org/packages/ggbio" } ], "version": "1.26.1" }, { "repositories": [ { "commit": "594521ca556ef7d97cf4882ecfa54d22c2a2faba", "type": "git", "url": "https://git.bioconductor.org/packages/ggbio" } ], "version": "1.28.5" }, { "repositories": [ { "commit": "8b05258b089b06a743352e92058edda06c24cfb7", "type": "git", "url": "https://git.bioconductor.org/packages/ggbio" } ], "version": "1.30.0" }, { "repositories": [ { "commit": "04bd12fbe0b1c5c6b721a5f927e1352765f9bf88", "type": "git", "url": "https://git.bioconductor.org/packages/ggbio" } ], "version": "1.32.0" }, { "repositories": [ { "commit": "c39c51993f419cfc2f094e664477f25f5212a242", "type": "git", "url": "https://git.bioconductor.org/packages/ggbio" } ], "version": "1.38.0" }, { "repositories": [ { "commit": "3540047ef018957d59fba8af7d3c58e4659f8e26", "type": "git", "url": "https://git.bioconductor.org/packages/ggbio" } ], "version": "1.42.0" }, { "repositories": [ { "commit": "cb21284a9803917fa76e116adfc456525c95f660", "type": "git", "url": "https://git.bioconductor.org/packages/ggbio" } ], "version": "1.44.0" }, { "repositories": [ { "commit": "0301d9464e304a8113ea4479185cd358855ca365", "type": "git", "url": "https://git.bioconductor.org/packages/ggbio" } ], "version": "1.44.1" }, { "repositories": [ { "commit": "d9c6cb495c7268bcaaab141231a9038aec8498bc", "type": "git", "url": "https://git.bioconductor.org/packages/ggbio" } ], "version": "1.46.0" }, { "repositories": [ { "commit": "fd4ebca44151e8f8e20ad2a38292398a3a4bb948", "type": "git", "url": "https://git.bioconductor.org/packages/ggbio" } ], "version": "1.48.0" } ] }, "r-ggdendro": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ggplot2", "r-mass" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ggdendro_0.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/ggdendro_0.1.23.tar.gz", "https://cloud.r-project.org/src/contrib/ggdendro_0.1.22.tar.gz", "https://cloud.r-project.org/src/contrib/ggdendro_0.1-20.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ggdendro" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-ggdendro", "patches": [], "summary": "Create Dendrograms and Tree Diagrams Using 'ggplot2'. This is a set of\ntools for dendrograms and tree plots using 'ggplot2'. The 'ggplot2'\nphilosophy is to clearly separate data from the presentation.\nUnfortunately the plot method for dendrograms plots directly to a plot\ndevice without exposing the data. The 'ggdendro' package resolves this\nby making available functions that extract the dendrogram plot data. The\npackage provides implementations for tree, rpart, as well as diana and\nagnes cluster diagrams.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ggdendro_0.1-20.tar.gz" ], "version": "0.1-20" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggdendro_0.1.22.tar.gz" ], "version": "0.1.22" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggdendro_0.1.23.tar.gz" ], "version": "0.1.23" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggdendro_0.2.0.tar.gz" ], "version": "0.2.0" } ] }, "r-ggforce": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-cli", "r-ggplot2", "r-gtable", "r-lifecycle", "r-mass", "r-polyclip", "r-rcpp", "r-rcppeigen", "r-rlang", "r-scales", "r-systemfonts", "r-tidyselect", "r-tweenr", "r-vctrs", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ggforce_0.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/ggforce_0.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/ggforce_0.3.3.tar.gz", "https://cloud.r-project.org/src/contrib/ggforce_0.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/ggforce_0.3.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ggforce" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-ggforce", "patches": [], "summary": "Accelerating 'ggplot2'. The aim of 'ggplot2' is to aid in visual data\ninvestigations. This focus has led to a lack of facilities for composing\nspecialised plots. 'ggforce' aims to be a collection of mainly new stats\nand geoms that fills this gap. All additional functionality is aimed to\ncome through the official extension system so using 'ggforce' should be\na stable experience.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ggforce_0.3.1.tar.gz" ], "version": "0.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggforce_0.3.2.tar.gz" ], "version": "0.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggforce_0.3.3.tar.gz" ], "version": "0.3.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggforce_0.4.1.tar.gz" ], "version": "0.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggforce_0.4.2.tar.gz" ], "version": "0.4.2" } ] }, "r-ggfun": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-dplyr", "r-ggplot2", "r-rlang" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ggfun_0.1.5.tar.gz", "https://cloud.r-project.org/src/contrib/ggfun_0.0.9.tar.gz", "https://cloud.r-project.org/src/contrib/ggfun_0.0.8.tar.gz", "https://cloud.r-project.org/src/contrib/ggfun_0.0.7.tar.gz", "https://cloud.r-project.org/src/contrib/ggfun_0.0.6.tar.gz", "https://cloud.r-project.org/src/contrib/ggfun_0.0.5.tar.gz", "https://cloud.r-project.org/src/contrib/ggfun_0.0.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ggfun" ], "licenses": [ "Artistic-2.0" ], "maintainers": [], "name": "r-ggfun", "patches": [], "summary": "Miscellaneous Functions for 'ggplot2'. Useful functions to edit 'ggplot'\nobject (e.g., setting fonts for theme and layers, adding rounded\nrectangle as background for each of the legends).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ggfun_0.0.4.tar.gz" ], "version": "0.0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggfun_0.0.5.tar.gz" ], "version": "0.0.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggfun_0.0.6.tar.gz" ], "version": "0.0.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggfun_0.0.7.tar.gz" ], "version": "0.0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggfun_0.0.8.tar.gz" ], "version": "0.0.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggfun_0.0.9.tar.gz" ], "version": "0.0.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggfun_0.1.5.tar.gz" ], "version": "0.1.5" } ] }, "r-ggjoy": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ggplot2", "r-ggridges" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ggjoy_0.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/ggjoy_0.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/ggjoy_0.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/ggjoy_0.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ggjoy" ], "licenses": [ "GPL-2.0-only OR custom" ], "maintainers": [], "name": "r-ggjoy", "patches": [], "summary": "Joyplots in 'ggplot2'. Joyplots provide a convenient way of visualizing\nchanges in distributions over time or space.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ggjoy_0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggjoy_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggjoy_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggjoy_0.4.1.tar.gz" ], "version": "0.4.1" } ] }, "r-ggmap": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-bitops", "r-cli", "r-digest", "r-dplyr", "r-geosphere", "r-ggplot2", "r-glue", "r-httr", "r-jpeg", "r-magrittr", "r-mapproj", "r-plyr", "r-png", "r-proto", "r-purrr", "r-reshape2", "r-rgooglemaps", "r-rjson", "r-rlang", "r-scales", "r-stringr", "r-tibble", "r-tidyr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ggmap_4.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/ggmap_3.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/ggmap_3.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/ggmap_3.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/ggmap_2.6.2.tar.gz", "https://cloud.r-project.org/src/contrib/ggmap_2.6.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ggmap" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-ggmap", "patches": [], "summary": "Spatial Visualization with ggplot2. A collection of functions to\nvisualize spatial data and models on top of static maps from various\nonline sources (e.g Google Maps and Stamen Maps). It includes tools\ncommon to those tasks, including functions for geolocation and routing.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ggmap_2.6.1.tar.gz" ], "version": "2.6.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggmap_2.6.2.tar.gz" ], "version": "2.6.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggmap_3.0.0.tar.gz" ], "version": "3.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggmap_3.0.1.tar.gz" ], "version": "3.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggmap_3.0.2.tar.gz" ], "version": "3.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggmap_4.0.0.tar.gz" ], "version": "4.0.0" } ] }, "r-ggnewscale": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ggplot2" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ggnewscale_0.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/ggnewscale_0.4.8.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ggnewscale" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-ggnewscale", "patches": [], "summary": "Multiple Fill and Colour Scales in 'ggplot2'. Use multiple fill and\ncolour scales in 'ggplot2'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ggnewscale_0.4.8.tar.gz" ], "version": "0.4.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggnewscale_0.5.0.tar.gz" ], "version": "0.5.0" } ] }, "r-ggplot2": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-digest", "r-glue", "r-gtable", "r-isoband", "r-lazyeval", "r-lifecycle", "r-mass", "r-mgcv", "r-plyr", "r-reshape2", "r-rlang", "r-scales", "r-tibble", "r-vctrs", "r-viridislite", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ggplot2_3.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/ggplot2_3.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/ggplot2_3.4.4.tar.gz", "https://cloud.r-project.org/src/contrib/ggplot2_3.4.3.tar.gz", "https://cloud.r-project.org/src/contrib/ggplot2_3.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/ggplot2_3.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/ggplot2_3.3.6.tar.gz", "https://cloud.r-project.org/src/contrib/ggplot2_3.3.5.tar.gz", "https://cloud.r-project.org/src/contrib/ggplot2_3.3.3.tar.gz", "https://cloud.r-project.org/src/contrib/ggplot2_3.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/ggplot2_3.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/ggplot2_2.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/ggplot2_2.1.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ggplot2" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-ggplot2", "patches": [], "summary": "Create Elegant Data Visualisations Using the Grammar of Graphics. A\nsystem for 'declaratively' creating graphics, based on \"The Grammar of\nGraphics\". You provide the data, tell 'ggplot2' how to map variables to\naesthetics, what graphical primitives to use, and it takes care of the\ndetails.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ggplot2_2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggplot2_2.2.1.tar.gz" ], "version": "2.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggplot2_3.1.1.tar.gz" ], "version": "3.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggplot2_3.2.0.tar.gz" ], "version": "3.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggplot2_3.3.3.tar.gz" ], "version": "3.3.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggplot2_3.3.5.tar.gz" ], "version": "3.3.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggplot2_3.3.6.tar.gz" ], "version": "3.3.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggplot2_3.4.0.tar.gz" ], "version": "3.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggplot2_3.4.2.tar.gz" ], "version": "3.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggplot2_3.4.3.tar.gz" ], "version": "3.4.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggplot2_3.4.4.tar.gz" ], "version": "3.4.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggplot2_3.5.0.tar.gz" ], "version": "3.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggplot2_3.5.1.tar.gz" ], "version": "3.5.1" } ] }, "r-ggplotify": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ggplot2", "r-gridgraphics", "r-rvcheck", "r-yulab-utils" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ggplotify_0.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/ggplotify_0.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/ggplotify_0.0.5.tar.gz", "https://cloud.r-project.org/src/contrib/ggplotify_0.0.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ggplotify" ], "licenses": [ "Artistic-2.0" ], "maintainers": [], "name": "r-ggplotify", "patches": [], "summary": "Convert Plot to 'grob' or 'ggplot' Object. Convert plot function call\n(using expression or formula) to 'grob' or 'ggplot' object that\ncompatible to the 'grid' and 'ggplot2' ecosystem. With this package, we\nare able to e.g. using 'cowplot' to align plots produced by 'base'\ngraphics, 'ComplexHeatmap', 'eulerr', 'grid', 'lattice', 'magick',\n'pheatmap', 'vcd' etc. by converting them to 'ggplot' objects.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ggplotify_0.0.3.tar.gz" ], "version": "0.0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggplotify_0.0.5.tar.gz" ], "version": "0.0.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggplotify_0.1.0.tar.gz" ], "version": "0.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggplotify_0.1.2.tar.gz" ], "version": "0.1.2" } ] }, "r-ggpubr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cowplot", "r-dplyr", "r-ggplot2", "r-ggrepel", "r-ggsci", "r-ggsignif", "r-glue", "r-gridextra", "r-magrittr", "r-plyr", "r-polynom", "r-purrr", "r-rlang", "r-rstatix", "r-scales", "r-tibble", "r-tidyr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ggpubr_0.6.0.tar.gz", "https://cloud.r-project.org/src/contrib/ggpubr_0.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/ggpubr_0.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/ggpubr_0.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/ggpubr_0.2.tar.gz", "https://cloud.r-project.org/src/contrib/ggpubr_0.1.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ggpubr" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-ggpubr", "patches": [], "summary": "'ggplot2' Based Publication Ready Plots. The 'ggplot2' package is\nexcellent and flexible for elegant data visualization in R. However the\ndefault generated plots requires some formatting before we can send them\nfor publication. Furthermore, to customize a 'ggplot', the syntax is\nopaque and this raises the level of difficulty for researchers with no\nadvanced R programming skills. 'ggpubr' provides some easy-to-use\nfunctions for creating and customizing 'ggplot2'- based publication\nready plots.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ggpubr_0.1.2.tar.gz" ], "version": "0.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggpubr_0.2.tar.gz" ], "version": "0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggpubr_0.2.1.tar.gz" ], "version": "0.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggpubr_0.2.2.tar.gz" ], "version": "0.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggpubr_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggpubr_0.6.0.tar.gz" ], "version": "0.6.0" } ] }, "r-ggraph": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-cli", "r-cpp11", "r-digest", "r-dplyr", "r-ggforce", "r-ggplot2", "r-ggrepel", "r-graphlayouts", "r-gtable", "r-igraph", "r-lifecycle", "r-mass", "r-memoise", "r-rcpp", "r-rlang", "r-scales", "r-tidygraph", "r-vctrs", "r-viridis", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ggraph_2.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/ggraph_2.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/ggraph_2.0.6.tar.gz", "https://cloud.r-project.org/src/contrib/ggraph_2.0.5.tar.gz", "https://cloud.r-project.org/src/contrib/ggraph_2.0.4.tar.gz", "https://cloud.r-project.org/src/contrib/ggraph_2.0.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ggraph" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-ggraph", "patches": [], "summary": "An Implementation of Grammar of Graphics for Graphs and Networks. The\ngrammar of graphics as implemented in ggplot2 is a poor fit for graph\nand network visualizations due to its reliance on tabular data input.\nggraph is an extension of the ggplot2 API tailored to graph\nvisualizations and provides the same flexible approach to building up\nplots layer by layer.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ggraph_2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggraph_2.0.4.tar.gz" ], "version": "2.0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggraph_2.0.5.tar.gz" ], "version": "2.0.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggraph_2.0.6.tar.gz" ], "version": "2.0.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggraph_2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggraph_2.2.1.tar.gz" ], "version": "2.2.1" } ] }, "r-ggrastr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cairo", "r-ggbeeswarm", "r-ggplot2", "r-png", "r-ragg" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ggrastr_1.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/ggrastr_1.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ggrastr" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-ggrastr", "patches": [], "summary": "Rasterize Layers for 'ggplot2'. Rasterize only specific layers of a\n'ggplot2' plot while simultaneously keeping all labels and text in\nvector format. This allows users to keep plots within the reasonable\nsize limit without loosing vector properties of the scale-sensitive\ninformation.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ggrastr_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggrastr_1.0.2.tar.gz" ], "version": "1.0.2" } ] }, "r-ggrepel": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-ggplot2", "r-rcpp", "r-rlang", "r-scales", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ggrepel_0.9.5.tar.gz", "https://cloud.r-project.org/src/contrib/ggrepel_0.9.3.tar.gz", "https://cloud.r-project.org/src/contrib/ggrepel_0.9.2.tar.gz", "https://cloud.r-project.org/src/contrib/ggrepel_0.9.1.tar.gz", "https://cloud.r-project.org/src/contrib/ggrepel_0.9.0.tar.gz", "https://cloud.r-project.org/src/contrib/ggrepel_0.8.1.tar.gz", "https://cloud.r-project.org/src/contrib/ggrepel_0.8.0.tar.gz", "https://cloud.r-project.org/src/contrib/ggrepel_0.6.5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ggrepel" ], "licenses": [ "GPL-3.0-only OR custom" ], "maintainers": [], "name": "r-ggrepel", "patches": [], "summary": "Repulsive Text and Label Geoms for 'ggplot2'. Provides text and label\ngeoms for 'ggplot2' that help to avoid overlapping text labels. Labels\nrepel away from each other and away from the data points.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ggrepel_0.6.5.tar.gz" ], "version": "0.6.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggrepel_0.8.0.tar.gz" ], "version": "0.8.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggrepel_0.8.1.tar.gz" ], "version": "0.8.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggrepel_0.9.0.tar.gz" ], "version": "0.9.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggrepel_0.9.1.tar.gz" ], "version": "0.9.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggrepel_0.9.2.tar.gz" ], "version": "0.9.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggrepel_0.9.3.tar.gz" ], "version": "0.9.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggrepel_0.9.5.tar.gz" ], "version": "0.9.5" } ] }, "r-ggridges": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ggplot2", "r-plyr", "r-scales", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ggridges_0.5.6.tar.gz", "https://cloud.r-project.org/src/contrib/ggridges_0.5.4.tar.gz", "https://cloud.r-project.org/src/contrib/ggridges_0.5.3.tar.gz", "https://cloud.r-project.org/src/contrib/ggridges_0.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/ggridges_0.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/ggridges_0.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/ggridges_0.4.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ggridges" ], "licenses": [ "GPL-2.0-only OR custom" ], "maintainers": [], "name": "r-ggridges", "patches": [], "summary": "Ridgeline Plots in 'ggplot2'. Ridgeline plots provide a convenient way\nof visualizing changes in distributions over time or space. This package\nenables the creation of such plots in 'ggplot2'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ggridges_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggridges_0.4.1.tar.gz" ], "version": "0.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggridges_0.5.0.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggridges_0.5.1.tar.gz" ], "version": "0.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggridges_0.5.3.tar.gz" ], "version": "0.5.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggridges_0.5.4.tar.gz" ], "version": "0.5.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggridges_0.5.6.tar.gz" ], "version": "0.5.6" } ] }, "r-ggsci": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ggplot2", "r-scales" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ggsci_3.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/ggsci_3.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/ggsci_2.9.tar.gz", "https://cloud.r-project.org/src/contrib/ggsci_2.8.tar.gz", "https://cloud.r-project.org/src/contrib/ggsci_2.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ggsci" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-ggsci", "patches": [], "summary": "Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'.\ncollection of 'ggplot2' color palettes inspired by plots in scientific\njournals, data visualization libraries, science fiction movies, and TV\nshows.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ggsci_2.4.tar.gz" ], "version": "2.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggsci_2.8.tar.gz" ], "version": "2.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggsci_2.9.tar.gz" ], "version": "2.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggsci_3.0.0.tar.gz" ], "version": "3.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggsci_3.2.0.tar.gz" ], "version": "3.2.0" } ] }, "r-ggsignif": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ggplot2" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ggsignif_0.6.4.tar.gz", "https://cloud.r-project.org/src/contrib/ggsignif_0.6.3.tar.gz", "https://cloud.r-project.org/src/contrib/ggsignif_0.6.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ggsignif" ], "licenses": [ "GPL-3.0-only OR custom" ], "maintainers": [], "name": "r-ggsignif", "patches": [], "summary": "Significance Brackets for 'ggplot2'. Enrich your 'ggplots' with group-\nwise comparisons. This package provides an easy way to indicate if two\ngroups are significantly different. Commonly this is shown by a bracket\non top connecting the groups of interest which itself is annotated with\nthe level of significance (NS, *, **, ***). The package provides a\nsingle layer (geom_signif()) that takes the groups for comparison and\nthe test (t.test(), wilcox.text() etc.) as arguments and adds the\nannotation to the plot.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ggsignif_0.6.0.tar.gz" ], "version": "0.6.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggsignif_0.6.3.tar.gz" ], "version": "0.6.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggsignif_0.6.4.tar.gz" ], "version": "0.6.4" } ] }, "r-ggstats": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-broom-helpers", "r-cli", "r-dplyr", "r-forcats", "r-ggplot2", "r-lifecycle", "r-magrittr", "r-patchwork", "r-purrr", "r-rlang", "r-scales", "r-stringr", "r-tidyr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ggstats_0.6.0.tar.gz", null ], "homepages": [ "https://larmarange.github.io/ggstats/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-ggstats", "patches": [], "summary": "Provides new statistics, new geometries and new positions for 'ggplot2'\nand a suite of functions to facilitate the creation of statistical\nplots.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ggstats_0.6.0.tar.gz" ], "version": "0.6.0" } ] }, "r-ggthemes": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ggplot2", "r-lifecycle", "r-purrr", "r-scales", "r-stringr", "r-tibble" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ggthemes_5.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/ggthemes_4.2.4.tar.gz", "https://cloud.r-project.org/src/contrib/ggthemes_4.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ggthemes" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-ggthemes", "patches": [], "summary": "Extra Themes, Scales and Geoms for 'ggplot2'. Some extra themes, geoms,\nand scales for 'ggplot2'. Provides 'ggplot2' themes and scales that\nreplicate the look of plots by Edward Tufte, Stephen Few,\n'Fivethirtyeight', 'The Economist', 'Stata', 'Excel', and 'The Wall\nStreet Journal', among others. Provides 'geoms' for Tufte's box plot and\nrange frame.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ggthemes_4.2.0.tar.gz" ], "version": "4.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggthemes_4.2.4.tar.gz" ], "version": "4.2.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggthemes_5.1.0.tar.gz" ], "version": "5.1.0" } ] }, "r-ggtree": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ape", "r-aplot", "r-cli", "r-dplyr", "r-ggfun", "r-ggplot2", "r-magrittr", "r-purrr", "r-rlang", "r-scales", "r-tidyr", "r-tidytree", "r-treeio", "r-yulab-utils" ], "downloads": [ "https://git.bioconductor.org/packages/ggtree" ], "homepages": [ "https://bioconductor.org/packages/ggtree" ], "licenses": [], "maintainers": [], "name": "r-ggtree", "patches": [], "summary": "an R package for visualization of tree and annotation data. 'ggtree'\nextends the 'ggplot2' plotting system which implemented the grammar of\ngraphics. 'ggtree' is designed for visualization and annotation of\nphylogenetic trees and other tree-like structures with their annotation\ndata.\n", "version": [ { "repositories": [ { "commit": "d3747e636fe1a6a9e09b56a3a3899208ebd05547", "type": "git", "url": "https://git.bioconductor.org/packages/ggtree" } ], "version": "3.2.1" }, { "repositories": [ { "commit": "23f08a3da1829d1bbb6827ed1c4cf878daa4b539", "type": "git", "url": "https://git.bioconductor.org/packages/ggtree" } ], "version": "3.4.0" }, { "repositories": [ { "commit": "8e48d3e2ea445b6c2213f0471462108a7a72b333", "type": "git", "url": "https://git.bioconductor.org/packages/ggtree" } ], "version": "3.4.4" }, { "repositories": [ { "commit": "431ec37bc0f0159b08a7990ce1d9374e160b9f44", "type": "git", "url": "https://git.bioconductor.org/packages/ggtree" } ], "version": "3.6.2" }, { "repositories": [ { "commit": "e7c989085d0848e4d5f82aa8000422c71458a9a8", "type": "git", "url": "https://git.bioconductor.org/packages/ggtree" } ], "version": "3.8.0" } ] }, "r-ggvis": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-assertthat", "r-dplyr", "r-htmltools", "r-jsonlite", "r-lazyeval", "r-magrittr", "r-rlang", "r-shiny" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ggvis_0.4.9.tar.gz", "https://cloud.r-project.org/src/contrib/ggvis_0.4.8.tar.gz", "https://cloud.r-project.org/src/contrib/ggvis_0.4.7.tar.gz", "https://cloud.r-project.org/src/contrib/ggvis_0.4.4.tar.gz", "https://cloud.r-project.org/src/contrib/ggvis_0.4.3.tar.gz", "https://cloud.r-project.org/src/contrib/ggvis_0.4.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ggvis" ], "licenses": [ "GPL-2.0-only OR custom" ], "maintainers": [], "name": "r-ggvis", "patches": [], "summary": "Interactive Grammar of Graphics. An implementation of an interactive\ngrammar of graphics, taking the best parts of 'ggplot2', combining them\nwith the reactive framework from 'shiny' and web graphics from 'vega'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ggvis_0.4.2.tar.gz" ], "version": "0.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggvis_0.4.3.tar.gz" ], "version": "0.4.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggvis_0.4.4.tar.gz" ], "version": "0.4.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggvis_0.4.7.tar.gz" ], "version": "0.4.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggvis_0.4.8.tar.gz" ], "version": "0.4.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ggvis_0.4.9.tar.gz" ], "version": "0.4.9" } ] }, "r-gh": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-gitcreds", "r-glue", "r-httr", "r-httr2", "r-ini", "r-jsonlite", "r-lifecycle", "r-rlang" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gh_1.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/gh_1.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/gh_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/gh_1.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/gh_1.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/gh_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/gh_1.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gh" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-gh", "patches": [], "summary": "'GitHub' 'API'. Minimal client to access the 'GitHub' 'API'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gh_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gh_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gh_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gh_1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gh_1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gh_1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gh_1.4.1.tar.gz" ], "version": "1.4.1" } ] }, "r-gistr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-assertthat", "r-crul", "r-dplyr", "r-httr", "r-jsonlite", "r-knitr", "r-magrittr", "r-rmarkdown" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gistr_0.9.0.tar.gz", "https://cloud.r-project.org/src/contrib/gistr_0.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/gistr_0.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/gistr_0.3.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gistr" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-gistr", "patches": [], "summary": "Work with 'GitHub' 'Gists'. Work with 'GitHub' 'gists' from 'R' (e.g.,\n,\n).\nA 'gist' is simply one or more files with code/text/images/etc. This\npackage allows the user to create new 'gists', update 'gists' with new\nfiles, rename files, delete files, get and delete 'gists', star and 'un-\nstar' 'gists', fork 'gists', open a 'gist' in your default browser, get\nembed code for a 'gist', list 'gist' 'commits', and get rate limit\ninformation when 'authenticated'. Some requests require authentication\nand some do not. 'Gists' website: .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gistr_0.3.6.tar.gz" ], "version": "0.3.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gistr_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gistr_0.4.2.tar.gz" ], "version": "0.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gistr_0.9.0.tar.gz" ], "version": "0.9.0" } ] }, "r-git2r": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "libgit2", "libssh2", "openssl", "r", "zlib-api" ], "downloads": [ "https://cloud.r-project.org/src/contrib/git2r_0.33.0.tar.gz", "https://cloud.r-project.org/src/contrib/git2r_0.32.0.tar.gz", "https://cloud.r-project.org/src/contrib/git2r_0.31.0.tar.gz", "https://cloud.r-project.org/src/contrib/git2r_0.30.1.tar.gz", "https://cloud.r-project.org/src/contrib/git2r_0.29.0.tar.gz", "https://cloud.r-project.org/src/contrib/git2r_0.28.0.tar.gz", "https://cloud.r-project.org/src/contrib/git2r_0.27.1.tar.gz", "https://cloud.r-project.org/src/contrib/git2r_0.26.1.tar.gz", "https://cloud.r-project.org/src/contrib/git2r_0.26.0.tar.gz", "https://cloud.r-project.org/src/contrib/git2r_0.18.0.tar.gz", "https://cloud.r-project.org/src/contrib/git2r_0.15.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=git2r" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-git2r", "patches": [], "summary": "Provides Access to Git Repositories. Interface to the 'libgit2' library,\nwhich is a pure C implementation of the 'Git' core methods. Provides\naccess to 'Git' repositories to extract data and running some basic\n'Git' commands.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/git2r_0.15.0.tar.gz" ], "version": "0.15.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/git2r_0.18.0.tar.gz" ], "version": "0.18.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/git2r_0.26.0.tar.gz" ], "version": "0.26.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/git2r_0.26.1.tar.gz" ], "version": "0.26.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/git2r_0.27.1.tar.gz" ], "version": "0.27.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/git2r_0.28.0.tar.gz" ], "version": "0.28.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/git2r_0.29.0.tar.gz" ], "version": "0.29.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/git2r_0.30.1.tar.gz" ], "version": "0.30.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/git2r_0.31.0.tar.gz" ], "version": "0.31.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/git2r_0.32.0.tar.gz" ], "version": "0.32.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/git2r_0.33.0.tar.gz" ], "version": "0.33.0" } ] }, "r-gitcreds": { "alias": [], "categories": [], "dependencies": [ "git", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gitcreds_0.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/gitcreds_0.1.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gitcreds" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-gitcreds", "patches": [], "summary": "Query 'git' Credentials from 'R'. Query, set, delete credentials from\nthe 'git' credential store. Manage 'GitHub' tokens and other 'git'\ncredentials. This package is to be used by other packages that need to\nauthenticate to 'GitHub' and/or other 'git' repositories.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gitcreds_0.1.1.tar.gz" ], "version": "0.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gitcreds_0.1.2.tar.gz" ], "version": "0.1.2" } ] }, "r-glimma": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-biobase", "r-deseq2", "r-edger", "r-htmlwidgets", "r-jsonlite", "r-limma", "r-s4vectors", "r-scater", "r-summarizedexperiment" ], "downloads": [ "https://git.bioconductor.org/packages/Glimma" ], "homepages": [ "https://bioconductor.org/packages/Glimma" ], "licenses": [ "LGPL-3.0-only" ], "maintainers": [], "name": "r-glimma", "patches": [], "summary": "Interactive HTML graphics. This package generates interactive\nvisualisations for analysis of RNA- sequencing data using output from\nlimma, edgeR or DESeq2 packages in an HTML page. The interactions are\nbuilt on top of the popular static representations of analysis results\nin order to provide additional information.\n", "version": [ { "repositories": [ { "commit": "ffc7abc36190396598fadec5e9c653441e47be72", "type": "git", "url": "https://git.bioconductor.org/packages/Glimma" } ], "version": "1.10.1" }, { "repositories": [ { "commit": "d02174239fe0b47983d6947ed42a1a53b24caecb", "type": "git", "url": "https://git.bioconductor.org/packages/Glimma" } ], "version": "1.12.0" }, { "repositories": [ { "commit": "c613c5334ed7868f36d5716b97fdb6234fb291f8", "type": "git", "url": "https://git.bioconductor.org/packages/Glimma" } ], "version": "1.4.0" }, { "repositories": [ { "commit": "57572996982806aa7ac155eedb97b03249979610", "type": "git", "url": "https://git.bioconductor.org/packages/Glimma" } ], "version": "1.6.0" }, { "repositories": [ { "commit": "7696aca2c023f74d244b6c908a6e7ba52bfcb34b", "type": "git", "url": "https://git.bioconductor.org/packages/Glimma" } ], "version": "1.8.2" }, { "repositories": [ { "commit": "40bebaa79e8c87c5686cff7285def4461c11bca9", "type": "git", "url": "https://git.bioconductor.org/packages/Glimma" } ], "version": "2.0.0" }, { "repositories": [ { "commit": "ea1257614c5fca0cedf5805d5b9a21e8b7d15d18", "type": "git", "url": "https://git.bioconductor.org/packages/Glimma" } ], "version": "2.10.0" }, { "repositories": [ { "commit": "caa270e44ec6994035d2e915c0f68a14ccbb58db", "type": "git", "url": "https://git.bioconductor.org/packages/Glimma" } ], "version": "2.4.0" }, { "repositories": [ { "commit": "23220d9b90476059aab035b5de11b7ce04b331c8", "type": "git", "url": "https://git.bioconductor.org/packages/Glimma" } ], "version": "2.6.0" }, { "repositories": [ { "commit": "09cec82e9af9c6775192570f8c28f050c0df08ac", "type": "git", "url": "https://git.bioconductor.org/packages/Glimma" } ], "version": "2.8.0" } ] }, "r-glmgampoi": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-beachmat", "r-biocgenerics", "r-delayedarray", "r-delayedmatrixstats", "r-hdf5array", "r-matrixgenerics", "r-matrixstats", "r-rcpp", "r-rcpparmadillo", "r-rlang", "r-singlecellexperiment", "r-summarizedexperiment", "r-vctrs" ], "downloads": [ "https://git.bioconductor.org/packages/glmGamPoi" ], "homepages": [ "https://bioconductor.org/packages/glmGamPoi" ], "licenses": [], "maintainers": [], "name": "r-glmgampoi", "patches": [], "summary": "Fit a Gamma-Poisson Generalized Linear Model. Fit linear models to\noverdispersed count data. The package can estimate the overdispersion\nand fit repeated models for matrix input. It is designed to handle large\ninput datasets as they typically occur in single cell RNA-seq\nexperiments.\n", "version": [ { "repositories": [ { "commit": "048e17384209fc07031e09875ec6eea35e90ef46", "type": "git", "url": "https://git.bioconductor.org/packages/glmGamPoi" } ], "version": "1.10.0" }, { "repositories": [ { "commit": "5fdfa5ca1a56b19e51bc6e307ca6015cc56109a0", "type": "git", "url": "https://git.bioconductor.org/packages/glmGamPoi" } ], "version": "1.12.0" }, { "repositories": [ { "commit": "b723d61e05c1ad50a3cf6a6393ec3d97adc7edb4", "type": "git", "url": "https://git.bioconductor.org/packages/glmGamPoi" } ], "version": "1.8.0" } ] }, "r-glmnet": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "fortran", "gmake", "r", "r-foreach", "r-matrix", "r-rcpp", "r-rcppeigen", "r-shape", "r-survival" ], "downloads": [ "https://cloud.r-project.org/src/contrib/glmnet_4.1-8.tar.gz", "https://cloud.r-project.org/src/contrib/glmnet_4.1-7.tar.gz", "https://cloud.r-project.org/src/contrib/glmnet_4.1-4.tar.gz", "https://cloud.r-project.org/src/contrib/glmnet_4.1-3.tar.gz", "https://cloud.r-project.org/src/contrib/glmnet_4.1.tar.gz", "https://cloud.r-project.org/src/contrib/glmnet_2.0-18.tar.gz", "https://cloud.r-project.org/src/contrib/glmnet_2.0-13.tar.gz", "https://cloud.r-project.org/src/contrib/glmnet_2.0-5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=glmnet" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-glmnet", "patches": [], "summary": "Lasso and Elastic-Net Regularized Generalized Linear Models. Extremely\nefficient procedures for fitting the entire lasso or elastic-net\nregularization path for linear regression, logistic and multinomial\nregression models, Poisson regression and the Cox model. Two recent\nadditions are the multiple-response Gaussian, and the grouped\nmultinomial. The algorithm uses cyclical coordinate descent in a path-\nwise fashion, as described in the paper linked to via the URL below.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/glmnet_2.0-13.tar.gz" ], "version": "2.0-13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/glmnet_2.0-18.tar.gz" ], "version": "2.0-18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/glmnet_2.0-5.tar.gz" ], "version": "2.0-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/glmnet_4.1.tar.gz" ], "version": "4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/glmnet_4.1-3.tar.gz" ], "version": "4.1-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/glmnet_4.1-4.tar.gz" ], "version": "4.1-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/glmnet_4.1-7.tar.gz" ], "version": "4.1-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/glmnet_4.1-8.tar.gz" ], "version": "4.1-8" } ] }, "r-globaloptions": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/GlobalOptions_0.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/GlobalOptions_0.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/GlobalOptions_0.0.12.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=GlobalOptions" ], "licenses": [], "maintainers": [], "name": "r-globaloptions", "patches": [], "summary": "Generate Functions to Get or Set Global Options. It provides more\ncontrols on the option values such as validation and filtering on the\nvalues, making options invisible or private.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/GlobalOptions_0.0.12.tar.gz" ], "version": "0.0.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GlobalOptions_0.1.0.tar.gz" ], "version": "0.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GlobalOptions_0.1.2.tar.gz" ], "version": "0.1.2" } ] }, "r-globals": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-codetools" ], "downloads": [ "https://cloud.r-project.org/src/contrib/globals_0.16.3.tar.gz", "https://cloud.r-project.org/src/contrib/globals_0.16.2.tar.gz", "https://cloud.r-project.org/src/contrib/globals_0.16.1.tar.gz", "https://cloud.r-project.org/src/contrib/globals_0.15.0.tar.gz", "https://cloud.r-project.org/src/contrib/globals_0.14.0.tar.gz", "https://cloud.r-project.org/src/contrib/globals_0.12.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=globals" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "r-globals", "patches": [], "summary": "Identify Global Objects in R Expressions. Identifies global (\"unknown\"\nor \"free\") objects in R expressions by code inspection using various\nstrategies, e.g. conservative or liberal. The objective of this package\nis to make it as simple as possible to identify global objects for the\npurpose of exporting them in distributed compute environments.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/globals_0.12.4.tar.gz" ], "version": "0.12.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/globals_0.14.0.tar.gz" ], "version": "0.14.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/globals_0.15.0.tar.gz" ], "version": "0.15.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/globals_0.16.1.tar.gz" ], "version": "0.16.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/globals_0.16.2.tar.gz" ], "version": "0.16.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/globals_0.16.3.tar.gz" ], "version": "0.16.3" } ] }, "r-globaltest": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotate", "r-annotationdbi", "r-biobase", "r-survival" ], "downloads": [ "https://git.bioconductor.org/packages/globaltest" ], "homepages": [ "https://bioconductor.org/packages/globaltest" ], "licenses": [], "maintainers": [], "name": "r-globaltest", "patches": [], "summary": "Testing Groups of Covariates/Features for Association with a Response\nVariable, with Applications to Gene Set Testing. The global test tests\ngroups of covariates (or features) for association with a response\nvariable. This package implements the test with diagnostic plots and\nmultiple testing utilities, along with several functions to facilitate\nthe use of this test for gene set testing of GO and KEGG terms.\n", "version": [ { "repositories": [ { "commit": "571933d5c779a241740be913ff49ecdd59bcbc45", "type": "git", "url": "https://git.bioconductor.org/packages/globaltest" } ], "version": "5.44.0" }, { "repositories": [ { "commit": "86c2c8f35734dcbc8c8ca791d8a190dc525beac9", "type": "git", "url": "https://git.bioconductor.org/packages/globaltest" } ], "version": "5.48.0" }, { "repositories": [ { "commit": "08612a06eb1cc7381f9bf70f6fe198bb401a21df", "type": "git", "url": "https://git.bioconductor.org/packages/globaltest" } ], "version": "5.50.0" }, { "repositories": [ { "commit": "a1fc3ad206454d1151bcc940644fd8a5c4164d63", "type": "git", "url": "https://git.bioconductor.org/packages/globaltest" } ], "version": "5.52.0" }, { "repositories": [ { "commit": "bb8bc5f757c8b7c020da31b6a3f500075715ab8e", "type": "git", "url": "https://git.bioconductor.org/packages/globaltest" } ], "version": "5.54.0" } ] }, "r-glue": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/glue_1.7.0.tar.gz", "https://cloud.r-project.org/src/contrib/glue_1.6.2.tar.gz", "https://cloud.r-project.org/src/contrib/glue_1.6.1.tar.gz", "https://cloud.r-project.org/src/contrib/glue_1.6.0.tar.gz", "https://cloud.r-project.org/src/contrib/glue_1.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/glue_1.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/glue_1.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/glue_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/glue_1.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/glue_1.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=glue" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-glue", "patches": [], "summary": "Interpreted String Literals. An implementation of interpreted string\nliterals, inspired by Python's Literal String Interpolation\n and Docstrings\n and Julia's Triple-Quoted\nString Literals .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/glue_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/glue_1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/glue_1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/glue_1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/glue_1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/glue_1.4.2.tar.gz" ], "version": "1.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/glue_1.6.0.tar.gz" ], "version": "1.6.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/glue_1.6.1.tar.gz" ], "version": "1.6.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/glue_1.6.2.tar.gz" ], "version": "1.6.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/glue_1.7.0.tar.gz" ], "version": "1.7.0" } ] }, "r-gmodels": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-gdata", "r-mass" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gmodels_2.19.1.tar.gz", "https://cloud.r-project.org/src/contrib/gmodels_2.18.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/gmodels_2.18.1.tar.gz", "https://cloud.r-project.org/src/contrib/gmodels_2.16.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gmodels" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-gmodels", "patches": [], "summary": "Various R programming tools for model fitting.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gmodels_2.16.2.tar.gz" ], "version": "2.16.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gmodels_2.18.1.tar.gz" ], "version": "2.18.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gmodels_2.18.1.1.tar.gz" ], "version": "2.18.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gmodels_2.19.1.tar.gz" ], "version": "2.19.1" } ] }, "r-gmp": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "gmp", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gmp_0.7-4.tar.gz", "https://cloud.r-project.org/src/contrib/gmp_0.7-1.tar.gz", "https://cloud.r-project.org/src/contrib/gmp_0.6-7.tar.gz", "https://cloud.r-project.org/src/contrib/gmp_0.6-6.tar.gz", "https://cloud.r-project.org/src/contrib/gmp_0.6-5.tar.gz", "https://cloud.r-project.org/src/contrib/gmp_0.6-2.1.tar.gz", "https://cloud.r-project.org/src/contrib/gmp_0.6-2.tar.gz", "https://cloud.r-project.org/src/contrib/gmp_0.5-13.5.tar.gz", "https://cloud.r-project.org/src/contrib/gmp_0.5-13.4.tar.gz", "https://cloud.r-project.org/src/contrib/gmp_0.5-13.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gmp" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-gmp", "patches": [], "summary": "Multiple Precision Arithmetic. Multiple Precision Arithmetic (big\nintegers and rationals, prime number tests, matrix computation),\n\"arithmetic without limitations\" using the C library GMP (GNU Multiple\nPrecision Arithmetic).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gmp_0.5-13.1.tar.gz" ], "version": "0.5-13.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gmp_0.5-13.4.tar.gz" ], "version": "0.5-13.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gmp_0.5-13.5.tar.gz" ], "version": "0.5-13.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gmp_0.6-2.tar.gz" ], "version": "0.6-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gmp_0.6-2.1.tar.gz" ], "version": "0.6-2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gmp_0.6-5.tar.gz" ], "version": "0.6-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gmp_0.6-6.tar.gz" ], "version": "0.6-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gmp_0.6-7.tar.gz" ], "version": "0.6-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gmp_0.7-1.tar.gz" ], "version": "0.7-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gmp_0.7-4.tar.gz" ], "version": "0.7-4" } ] }, "r-go-db": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotationdbi" ], "downloads": [ "https://bioconductor.org/packages/3.17/data/annotation/src/contrib/GO.db_3.17.0.tar.gz", "https://bioconductor.org/packages/3.16/data/annotation/src/contrib/GO.db_3.16.0.tar.gz", "https://bioconductor.org/packages/3.15/data/annotation/src/contrib/GO.db_3.15.0.tar.gz", "https://bioconductor.org/packages/3.14/data/annotation/src/contrib/GO.db_3.14.0.tar.gz", "https://bioconductor.org/packages/3.12/data/annotation/src/contrib/GO.db_3.12.1.tar.gz", "https://bioconductor.org/packages/3.5/data/annotation/src/contrib/GO.db_3.4.1.tar.gz", "https://git.bioconductor.org/packages/GO.db" ], "homepages": [ "https://bioconductor.org/packages/GO.db" ], "licenses": [], "maintainers": [], "name": "r-go-db", "patches": [], "summary": "A set of annotation maps describing the entire Gene Ontology. A set of\nannotation maps describing the entire Gene Ontology assembled using data\nfrom GO.\n", "version": [ { "downloads": [ "https://bioconductor.org/packages/3.12/data/annotation/src/contrib/GO.db_3.12.1.tar.gz" ], "version": "3.12.1" }, { "downloads": [ "https://bioconductor.org/packages/3.14/data/annotation/src/contrib/GO.db_3.14.0.tar.gz" ], "version": "3.14.0" }, { "downloads": [ "https://bioconductor.org/packages/3.15/data/annotation/src/contrib/GO.db_3.15.0.tar.gz" ], "version": "3.15.0" }, { "downloads": [ "https://bioconductor.org/packages/3.16/data/annotation/src/contrib/GO.db_3.16.0.tar.gz" ], "version": "3.16.0" }, { "downloads": [ "https://bioconductor.org/packages/3.17/data/annotation/src/contrib/GO.db_3.17.0.tar.gz" ], "version": "3.17.0" }, { "downloads": [ "https://bioconductor.org/packages/3.5/data/annotation/src/contrib/GO.db_3.4.1.tar.gz" ], "version": "3.4.1" } ] }, "r-goftest": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/goftest_1.2-3.tar.gz", "https://cloud.r-project.org/src/contrib/goftest_1.2-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=goftest" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-goftest", "patches": [], "summary": "Classical Goodness-of-Fit Tests for Univariate Distributions. Cramer-Von\nMises and Anderson-Darling tests of goodness-of-fit for continuous\nunivariate distributions, using efficient algorithms.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/goftest_1.2-2.tar.gz" ], "version": "1.2-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/goftest_1.2-3.tar.gz" ], "version": "1.2-3" } ] }, "r-gofuncr": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-annotationdbi", "r-genomicranges", "r-gtools", "r-iranges", "r-mapplots", "r-rcpp", "r-vioplot" ], "downloads": [ "https://git.bioconductor.org/packages/GOfuncR" ], "homepages": [ "https://bioconductor.org/packages/GOfuncR" ], "licenses": [], "maintainers": [], "name": "r-gofuncr", "patches": [], "summary": "Gene ontology enrichment using FUNC. GOfuncR performs a gene ontology\nenrichment analysis based on the ontology enrichment software FUNC. GO-\nannotations are obtained from OrganismDb or OrgDb packages\n('Homo.sapiens' by default); the GO-graph is included in the package and\nupdated regularly (27-Mar-2019). GOfuncR provides the standard candidate\nvs. background enrichment analysis using the hypergeometric test, as\nwell as three additional tests: (i) the Wilcoxon rank-sum test that is\nused when genes are ranked, (ii) a binomial test that is used when genes\nare associated with two counts and (iii) a Chi-square or Fisher's exact\ntest that is used in cases when genes are associated with four counts.\nTo correct for multiple testing and interdependency of the tests,\nfamily-wise error rates are computed based on random permutations of the\ngene-associated variables. GOfuncR also provides tools for exploring the\nontology graph and the annotations, and options to take gene-length or\nspatial clustering of genes into account. 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R interface to Google Charts API, allowing\nusers to create interactive charts based on data frames. Charts are\ndisplayed locally via the R HTTP help server. A modern browser with an\nInternet connection is required and for some charts a Flash player. 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Implementation of\nmultilayered visualizations for enhanced graphical representation of\nfunctional analysis data. It combines and integrates omics data derived\nfrom expression and functional annotation enrichment analyses. Its\nplotting functions have been developed with an hierarchical structure in\nmind: starting from a general overview to identify the most enriched\ncategories (modified bar plot, bubble plot) to a more detailed one\ndisplaying different types of relevant information for the molecules in\na given set of categories (circle plot, chord plot, cluster plot, Venn\ndiagram, heatmap).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/GOplot_1.0.2.tar.gz" ], "version": "1.0.2" } ] }, "r-gosemsim": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-annotationdbi", "r-go-db", "r-rcpp" ], "downloads": [ "https://git.bioconductor.org/packages/GOSemSim" ], "homepages": [ "https://bioconductor.org/packages/GOSemSim" ], "licenses": [], "maintainers": [], "name": "r-gosemsim", "patches": [], "summary": "GO-terms Semantic Similarity Measures. 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Various R programming\ntools for plotting data, including: [1] calculating and plotting locally\nsmoothed summary function as ('bandplot', 'wapply'), [2] enhanced\nversions of standard plots ('barplot2', 'boxplot2', 'heatmap.2',\n'smartlegend'), [3] manipulating colors ('col2hex', 'colorpanel',\n'redgreen', 'greenred', 'bluered', 'redblue', 'rich.colors'), [4]\ncalculating and plotting two-dimensional data summaries ('ci2d',\n'hist2d'), [5] enhanced regression diagnostic plots ('lmplot2',\n'residplot'), [6] formula-enabled interface to 'stats::lowess' function\n('lowess'), [7] displaying textual data in plots ('textplot',\n'sinkplot'), [8] plotting a matrix where each cell contains a dot whose\nsize reflects the relative magnitude of the elements ('balloonplot'),\n[9] plotting \"Venn\" diagrams ('venn'), [10] displaying Open-Office style\nplots ('ooplot'), [11] plotting multiple data on same region, with\nseparate axes ('overplot'), [12] plotting means and confidence intervals\n('plotCI', 'plotmeans'), [13] spacing points in an x-y plot so they\ndon't overlap ('space').\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gplots_3.0.1.tar.gz" ], "version": "3.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gplots_3.0.1.1.tar.gz" ], "version": "3.0.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gplots_3.1.1.tar.gz" ], "version": "3.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gplots_3.1.3.tar.gz" ], "version": "3.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gplots_3.1.3.1.tar.gz" ], "version": "3.1.3.1" } ] }, "r-graph": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-biocgenerics" ], "downloads": [ "https://git.bioconductor.org/packages/graph" ], "homepages": [ "https://bioconductor.org/packages/graph" ], "licenses": [], "maintainers": [], "name": "r-graph", "patches": [], "summary": "A package to handle graph data structures. A package that implements\nsome simple graph handling capabilities.\n", "version": [ { "repositories": [ { "commit": "2a8b08520096241620421078fc1098f4569c7301", "type": "git", "url": "https://git.bioconductor.org/packages/graph" } ], "version": "1.54.0" }, { "repositories": [ { "commit": "c4abe227dac525757679743e6fb4f49baa34acad", "type": "git", "url": "https://git.bioconductor.org/packages/graph" } ], "version": "1.56.0" }, { "repositories": [ { "commit": "6455d8e7a5a45dc733915942cb71005c1016b6a0", "type": "git", "url": "https://git.bioconductor.org/packages/graph" } ], "version": "1.58.2" }, { "repositories": [ { "commit": "e2aecb0a862f32091b16e0036f53367d3edf4c1d", "type": "git", "url": "https://git.bioconductor.org/packages/graph" } ], "version": "1.60.0" }, { "repositories": [ { "commit": "95223bd63ceb66cfe8d881f992a441de8b8c89a3", "type": "git", "url": "https://git.bioconductor.org/packages/graph" } ], "version": "1.62.0" }, { "repositories": [ { "commit": "03ad9ed088095605e317510b8234501318994e94", "type": "git", "url": "https://git.bioconductor.org/packages/graph" } ], "version": "1.68.0" }, { "repositories": [ { "commit": "7afbd26ecd76e55e6bbd74915a561d7a9b15f907", "type": "git", "url": "https://git.bioconductor.org/packages/graph" } ], "version": "1.72.0" }, { "repositories": [ { "commit": "4af608a5d9e1de33fda6ae28fb73bff9272ee296", "type": "git", "url": "https://git.bioconductor.org/packages/graph" } ], "version": "1.74.0" }, { "repositories": [ { "commit": "e3efc108716e98bd3363621d17a6f9c3ef975d19", "type": "git", "url": "https://git.bioconductor.org/packages/graph" } ], "version": "1.76.0" }, { "repositories": [ { "commit": "9df68e8f74e2b807b033f991d21142edfd1bc090", "type": "git", "url": "https://git.bioconductor.org/packages/graph" } ], "version": "1.78.0" } ] }, "r-graphlayouts": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-igraph", "r-rcpp", "r-rcpparmadillo" ], "downloads": [ "https://cloud.r-project.org/src/contrib/graphlayouts_1.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/graphlayouts_0.8.4.tar.gz", "https://cloud.r-project.org/src/contrib/graphlayouts_0.8.3.tar.gz", "https://cloud.r-project.org/src/contrib/graphlayouts_0.8.2.tar.gz", "https://cloud.r-project.org/src/contrib/graphlayouts_0.8.0.tar.gz", "https://cloud.r-project.org/src/contrib/graphlayouts_0.7.1.tar.gz", "https://cloud.r-project.org/src/contrib/graphlayouts_0.5.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=graphlayouts" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-graphlayouts", "patches": [], "summary": "Additional Layout Algorithms for Network Visualizations. Several new\nlayout algorithms to visualize networks are provided which are not part\nof 'igraph'. Most are based on the concept of stress majorization by\nGansner et al. (2004) . Some more\nspecific algorithms allow to emphasize hidden group structures in\nnetworks or focus on specific nodes.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/graphlayouts_0.5.0.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/graphlayouts_0.7.1.tar.gz" ], "version": "0.7.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/graphlayouts_0.8.0.tar.gz" ], "version": "0.8.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/graphlayouts_0.8.2.tar.gz" ], "version": "0.8.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/graphlayouts_0.8.3.tar.gz" ], "version": "0.8.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/graphlayouts_0.8.4.tar.gz" ], "version": "0.8.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/graphlayouts_1.1.1.tar.gz" ], "version": "1.1.1" } ] }, "r-grbase": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-biocmanager", "r-graph", "r-igraph", "r-magrittr", "r-matrix", "r-rbgl", "r-rcpp", "r-rcpparmadillo", "r-rcppeigen", "r-rgraphviz" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gRbase_2.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/gRbase_1.8.9.tar.gz", "https://cloud.r-project.org/src/contrib/gRbase_1.8.8.tar.gz", "https://cloud.r-project.org/src/contrib/gRbase_1.8.7.tar.gz", "https://cloud.r-project.org/src/contrib/gRbase_1.8-6.7.tar.gz", "https://cloud.r-project.org/src/contrib/gRbase_1.8-3.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gRbase" ], "licenses": [], "maintainers": [], "name": "r-grbase", "patches": [], "summary": "A Package for Graphical Modelling in R. The 'gRbase' package provides\ngraphical modelling features used by e.g. the packages 'gRain', 'gRim'\nand 'gRc'. 'gRbase' implements graph algorithms including (i) maximum\ncardinality search (for marked and unmarked graphs). (ii) moralization,\n(iii) triangulation, (iv) creation of junction tree. 'gRbase'\nfacilitates array operations, 'gRbase' implements functions for testing\nfor conditional independence. 'gRbase' illustrates how hierarchical log-\nlinear models may be implemented and describes concept of graphical meta\ndata. The facilities of the package are documented in the book by\nHojsgaard, Edwards and Lauritzen (2012, )\nand in the paper by Dethlefsen and Hojsgaard, (2005,\n). Please see 'citation(\"gRbase\")' for\ncitation details. NOTICE 'gRbase' requires that the packages graph,\n'Rgraphviz' and 'RBGL' are installed from 'bioconductor'; for\ninstallation instructions please refer to the web page given below.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gRbase_1.8-3.4.tar.gz" ], "version": "1.8-3.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gRbase_1.8-6.7.tar.gz" ], "version": "1.8-6.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gRbase_1.8.7.tar.gz" ], "version": "1.8.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gRbase_1.8.8.tar.gz" ], "version": "1.8.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gRbase_1.8.9.tar.gz" ], "version": "1.8.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gRbase_2.0.2.tar.gz" ], "version": "2.0.2" } ] }, "r-gridbase": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gridBase_0.4-7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gridBase" ], "licenses": [], "maintainers": [], "name": "r-gridbase", "patches": [], "summary": "Integration of base and grid graphics.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gridBase_0.4-7.tar.gz" ], "version": "0.4-7" } ] }, "r-gridextra": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-gtable" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gridExtra_2.3.tar.gz", "https://cloud.r-project.org/src/contrib/gridExtra_2.2.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gridExtra" ], "licenses": [], "maintainers": [], "name": "r-gridextra", "patches": [], "summary": "Miscellaneous Functions for \"Grid\" Graphics. Provides a number of user-\nlevel functions to work with \"grid\" graphics, notably to arrange\nmultiple grid-based plots on a page, and draw tables.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gridExtra_2.2.1.tar.gz" ], "version": "2.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gridExtra_2.3.tar.gz" ], "version": "2.3" } ] }, "r-gridgraphics": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gridGraphics_0.5-1.tar.gz", "https://cloud.r-project.org/src/contrib/gridGraphics_0.4-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gridGraphics" ], "licenses": [], "maintainers": [], "name": "r-gridgraphics", "patches": [], "summary": "Redraw Base Graphics Using 'grid' Graphics. Functions to convert a page\nof plots drawn with the 'graphics' package into identical output drawn\nwith the 'grid' package. The result looks like the original\n'graphics'-based plot, but consists of 'grid' grobs and viewports that\ncan then be manipulated with 'grid' functions (e.g., edit grobs and\nrevisit viewports).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gridGraphics_0.4-1.tar.gz" ], "version": "0.4-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gridGraphics_0.5-1.tar.gz" ], "version": "0.5-1" } ] }, "r-gsa": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/GSA_1.03.3.tar.gz", "https://cloud.r-project.org/src/contrib/GSA_1.03.2.tar.gz", "https://cloud.r-project.org/src/contrib/GSA_1.03.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=GSA" ], "licenses": [], "maintainers": [], "name": "r-gsa", "patches": [], "summary": "Gene Set Analysis.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/GSA_1.03.1.tar.gz" ], "version": "1.03.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GSA_1.03.2.tar.gz" ], "version": "1.03.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GSA_1.03.3.tar.gz" ], "version": "1.03.3" } ] }, "r-gsalib": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gsalib_2.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/gsalib_2.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gsalib" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-gsalib", "patches": [], "summary": "Utility Functions For GATK. This package contains utility functions used\nby the Genome Analysis Toolkit (GATK) to load tables and plot data. The\nGATK is a toolkit for variant discovery in high-throughput sequencing\ndata.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gsalib_2.1.tar.gz" ], "version": "2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gsalib_2.2.1.tar.gz" ], "version": "2.2.1" } ] }, "r-gseabase": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotate", "r-annotationdbi", "r-biobase", "r-biocgenerics", "r-graph", "r-xml" ], "downloads": [ "https://git.bioconductor.org/packages/GSEABase" ], "homepages": [ "https://bioconductor.org/packages/GSEABase" ], "licenses": [], "maintainers": [], "name": "r-gseabase", "patches": [], "summary": "Gene set enrichment data structures and methods. This package provides\nclasses and methods to support Gene Set Enrichment Analysis (GSEA).\n", "version": [ { "repositories": [ { "commit": "84c9f10c316163118ca990900a7a67555b96e75b", "type": "git", "url": "https://git.bioconductor.org/packages/GSEABase" } ], "version": "1.38.2" }, { "repositories": [ { "commit": "3e5441708b80aab2c9642988bee709d5732831a6", "type": "git", "url": "https://git.bioconductor.org/packages/GSEABase" } ], "version": "1.40.1" }, { "repositories": [ { "commit": "5e40ce0fdd4dc0cff7601b169bbf6aa1430ae33e", "type": "git", "url": "https://git.bioconductor.org/packages/GSEABase" } ], "version": "1.42.0" }, { "repositories": [ { "commit": "7042ff64a98b05b9572231ee1b4f3ae4fc9c768e", "type": "git", "url": "https://git.bioconductor.org/packages/GSEABase" } ], "version": "1.44.0" }, { "repositories": [ { "commit": "edce83a9256a0c03206c2bce7c90ada0d90f6622", "type": "git", "url": "https://git.bioconductor.org/packages/GSEABase" } ], "version": "1.46.0" }, { "repositories": [ { "commit": "257dfccbc5b507d82099fac6b06bb03825e995e8", "type": "git", "url": "https://git.bioconductor.org/packages/GSEABase" } ], "version": "1.52.1" }, { "repositories": [ { "commit": "ee7c3ca4ad0f1f3e9b9162db1515413802860ecc", "type": "git", "url": "https://git.bioconductor.org/packages/GSEABase" } ], "version": "1.56.0" }, { "repositories": [ { "commit": "7de04442fb1ab63ffde29f4e3daf13ad32e90bdb", "type": "git", "url": "https://git.bioconductor.org/packages/GSEABase" } ], "version": "1.58.0" }, { "repositories": [ { "commit": "aae4e52b50b076550967601f98031e952fb97765", "type": "git", "url": "https://git.bioconductor.org/packages/GSEABase" } ], "version": "1.60.0" }, { "repositories": [ { "commit": "fc20cbcd85da0202eb0f2316dcf63f6fb1372b3e", "type": "git", "url": "https://git.bioconductor.org/packages/GSEABase" } ], "version": "1.62.0" } ] }, "r-gsl": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gsl", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gsl_2.1-8.tar.gz", "https://cloud.r-project.org/src/contrib/gsl_2.1-7.1.tar.gz", "https://cloud.r-project.org/src/contrib/gsl_2.1-6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gsl" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-gsl", "patches": [], "summary": "Wrapper for the Gnu Scientific Library. An R wrapper for some of the\nfunctionality of the Gnu Scientific Library.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gsl_2.1-6.tar.gz" ], "version": "2.1-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gsl_2.1-7.1.tar.gz" ], "version": "2.1-7.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gsl_2.1-8.tar.gz" ], "version": "2.1-8" } ] }, "r-gsodr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-countrycode", "r-curl", "r-data-table", "r-future-apply", "r-httr", "r-r-utils" ], "downloads": [ "https://cloud.r-project.org/src/contrib/GSODR_4.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/GSODR_3.1.8.tar.gz", "https://cloud.r-project.org/src/contrib/GSODR_3.1.6.tar.gz", "https://cloud.r-project.org/src/contrib/GSODR_3.1.5.tar.gz", "https://cloud.r-project.org/src/contrib/GSODR_3.1.4.tar.gz", "https://cloud.r-project.org/src/contrib/GSODR_2.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/GSODR_2.1.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=GSODR" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-gsodr", "patches": [], "summary": "A Global Surface Summary of the Day (GSOD) Weather Data Client for R.\nProvides automated downloading, parsing, cleaning, unit conversion and\nformatting of Global Surface Summary of the Day ('GSOD') weather data\nfrom the from the USA National Centers for Environmental Information\n('NCEI'). Units are converted from from United States Customary System\n('USCS') units to International System of Units ('SI'). Stations may be\nindividually checked for number of missing days defined by the user,\nwhere stations with too many missing observations are omitted. Only\nstations with valid reported latitude and longitude values are permitted\nin the final data. Additional useful elements, saturation vapour\npressure ('es'), actual vapour pressure ('ea') and relative humidity\n('RH') are calculated from the original data using the improved August-\nRoche-Magnus approximation (Alduchov & Eskridge 1996) and included in\nthe final data set. The resulting metadata include station\nidentification information, country, state, latitude, longitude,\nelevation, weather observations and associated flags. For information on\nthe 'GSOD' data from 'NCEI', please see the 'GSOD' 'readme.txt' file\navailable from, .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/GSODR_2.1.1.tar.gz" ], "version": "2.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GSODR_2.1.2.tar.gz" ], "version": "2.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GSODR_3.1.4.tar.gz" ], "version": "3.1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GSODR_3.1.5.tar.gz" ], "version": "3.1.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GSODR_3.1.6.tar.gz" ], "version": "3.1.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GSODR_3.1.8.tar.gz" ], "version": "3.1.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GSODR_4.1.1.tar.gz" ], "version": "4.1.1" } ] }, "r-gson": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-jsonlite", "r-rlang", "r-tidyr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gson_0.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/gson_0.0.9.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gson" ], "licenses": [ "Artistic-2.0" ], "maintainers": [], "name": "r-gson", "patches": [], "summary": "Base Class and Methods for 'gson' Format. Proposes a new file format\n('gson') for storing gene set and related information, and provides\nread, write and other utilities to process this file format.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gson_0.0.9.tar.gz" ], "version": "0.0.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gson_0.1.0.tar.gz" ], "version": "0.1.0" } ] }, "r-gss": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gss_2.2-7.tar.gz", "https://cloud.r-project.org/src/contrib/gss_2.2-4.tar.gz", "https://cloud.r-project.org/src/contrib/gss_2.2-3.tar.gz", "https://cloud.r-project.org/src/contrib/gss_2.2-2.tar.gz", "https://cloud.r-project.org/src/contrib/gss_2.1-10.tar.gz", "https://cloud.r-project.org/src/contrib/gss_2.1-7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gss" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-gss", "patches": [], "summary": "General Smoothing Splines. 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Variogram modelling; simple, ordinary and universal point or\nblock (co)kriging; spatio-temporal kriging; sequential Gaussian or\nindicator (co)simulation; variogram and variogram map plotting utility\nfunctions; supports sf and stars.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gstat_2.0-3.tar.gz" ], "version": "2.0-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gstat_2.0-6.tar.gz" ], "version": "2.0-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gstat_2.0-8.tar.gz" ], "version": "2.0-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gstat_2.0-9.tar.gz" ], "version": "2.0-9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gstat_2.1-0.tar.gz" ], "version": "2.1-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gstat_2.1-1.tar.gz" ], "version": "2.1-1" } ] }, "r-gsubfn": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-proto" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gsubfn_0.7.tar.gz", "https://cloud.r-project.org/src/contrib/gsubfn_0.6-6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gsubfn" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-gsubfn", "patches": [], "summary": "Utilities for Strings and Function Arguments. gsubfn is like gsub but\ncan take a replacement function or certain other objects instead of the\nreplacement string. Matches and back references are input to the\nreplacement function and replaced by the function output. gsubfn can be\nused to split strings based on content rather than delimiters and for\nquasi-perl-style string interpolation. The package also has facilities\nfor translating formulas to functions and allowing such formulas in\nfunction calls instead of functions. This can be used with R functions\nsuch as apply, sapply, lapply, optim, integrate, xyplot, Filter and any\nother function that expects another function as an input argument or\nfunctions like cat or sql calls that may involve strings where\nsubstitution is desirable.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gsubfn_0.6-6.tar.gz" ], "version": "0.6-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gsubfn_0.7.tar.gz" ], "version": "0.7" } ] }, "r-gtable": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-glue", "r-lifecycle", "r-rlang" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gtable_0.3.5.tar.gz", "https://cloud.r-project.org/src/contrib/gtable_0.3.3.tar.gz", "https://cloud.r-project.org/src/contrib/gtable_0.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/gtable_0.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/gtable_0.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gtable" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-gtable", "patches": [], "summary": "Arrange 'Grobs' in Tables. Tools to make it easier to work with \"tables\"\nof 'grobs'. The 'gtable' package defines a 'gtable' grob class that\nspecifies a grid along with a list of grobs and their placement in the\ngrid. Further the package makes it easy to manipulate and combine\n'gtable' objects so that complex compositions can be build up\nsequentially.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gtable_0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gtable_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gtable_0.3.1.tar.gz" ], "version": "0.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gtable_0.3.3.tar.gz" ], "version": "0.3.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gtable_0.3.5.tar.gz" ], "version": "0.3.5" } ] }, "r-gtools": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/gtools_3.9.5.tar.gz", "https://cloud.r-project.org/src/contrib/gtools_3.9.4.tar.gz", "https://cloud.r-project.org/src/contrib/gtools_3.9.3.tar.gz", "https://cloud.r-project.org/src/contrib/gtools_3.9.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/gtools_3.9.2.tar.gz", "https://cloud.r-project.org/src/contrib/gtools_3.8.2.tar.gz", "https://cloud.r-project.org/src/contrib/gtools_3.8.1.tar.gz", "https://cloud.r-project.org/src/contrib/gtools_3.5.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=gtools" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-gtools", "patches": [], "summary": "Various R Programming Tools. Functions to assist in R programming.\nIncluding: [1] assist in developing, updating, and maintaining R and R\npackages ('ask', 'checkRVersion', 'getDependencies', 'keywords',\n'scat'); [2] calculate the logit and inverse logit transformations\n('logit', 'inv.logit'); [3] test if a value is missing, empty or\ncontains only NA and NULL values ('invalid'); [4] manipulate R's .Last\nfunction ('addLast'); [5] define macros ('defmacro'); [6] detect odd and\neven integers ('odd', 'even'); [7] convert strings containing non-ASCII\ncharacters (like single quotes) to plain ASCII ('ASCIIfy'); [8] perform\na binary search ('binsearch'); [9] sort strings containing both numeric\nand character components ('mixedsort'); [10] create a factor variable\nfrom the quantiles of a continuous variable ('quantcut'); [11] enumerate\npermutations and combinations ('combinations', 'permutation'); [12]\ncalculate and convert between fold-change and log-ratio ('foldchange',\n'logratio2foldchange', 'foldchange2logratio'); [13] calculate\nprobabilities and generate random numbers from Dirichlet distributions\n('rdirichlet', 'ddirichlet'); [14] apply a function over adjacent\nsubsets of a vector ('running'); [15] modify the TCP_NODELAY ('de-\nNagle') flag for socket objects; [16] efficient 'rbind' of data frames,\neven if the column names don't match ('smartbind'); [17] generate\nsignificance stars from p-values ('stars.pval'); [18] convert characters\nto/from ASCII codes;\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/gtools_3.5.0.tar.gz" ], "version": "3.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gtools_3.8.1.tar.gz" ], "version": "3.8.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gtools_3.8.2.tar.gz" ], "version": "3.8.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gtools_3.9.2.tar.gz" ], "version": "3.9.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gtools_3.9.2.1.tar.gz" ], "version": "3.9.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gtools_3.9.3.tar.gz" ], "version": "3.9.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gtools_3.9.4.tar.gz" ], "version": "3.9.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/gtools_3.9.5.tar.gz" ], "version": "3.9.5" } ] }, "r-gtrellis": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-circlize", "r-genomicranges", "r-getoptlong", "r-iranges" ], "downloads": [ "https://git.bioconductor.org/packages/gtrellis" ], "homepages": [ "https://bioconductor.org/packages/gtrellis" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-gtrellis", "patches": [], "summary": "Genome Level Trellis Layout. Genome level Trellis graph visualizes\ngenomic data conditioned by genomic categories (e.g. chromosomes). For\neach genomic category, multiple dimensional data which are represented\nas tracks describe different features from different aspects. This\npackage provides high flexibility to arrange genomic categories and to\nadd self-defined graphics in the plot.\n", "version": [ { "repositories": [ { "commit": "ff47d99743fd697d5c724f7bb18131dfe76dee71", "type": "git", "url": "https://git.bioconductor.org/packages/gtrellis" } ], "version": "1.11.1" }, { "repositories": [ { "commit": "7f3941adddbbfa17f4cf474b703568678a38272d", "type": "git", "url": "https://git.bioconductor.org/packages/gtrellis" } ], "version": "1.12.1" }, { "repositories": [ { "commit": "93935fb34211d12b250e22291712e18a31b0208d", "type": "git", "url": "https://git.bioconductor.org/packages/gtrellis" } ], "version": "1.14.0" }, { "repositories": [ { "commit": "a9003ededc8f2a48c78d4545e2f214023c13a7da", "type": "git", "url": "https://git.bioconductor.org/packages/gtrellis" } ], "version": "1.16.1" }, { "repositories": [ { "commit": "c071c5631f3dedda212aed87d9c02954b5ed6611", "type": "git", "url": "https://git.bioconductor.org/packages/gtrellis" } ], "version": "1.22.0" }, { "repositories": [ { "commit": "f2c3121b31ad1b422e2cf503435d0590e903ff3f", "type": "git", "url": "https://git.bioconductor.org/packages/gtrellis" } ], "version": "1.26.0" }, { "repositories": [ { "commit": "d770a7b3441e4003869c88cfd8e21fd6508b86c4", "type": "git", "url": "https://git.bioconductor.org/packages/gtrellis" } ], "version": "1.28.0" }, { "repositories": [ { "commit": "da93b30ef812e231c47aa83da5c521f1801b3d14", "type": "git", "url": "https://git.bioconductor.org/packages/gtrellis" } ], "version": "1.30.0" }, { "repositories": [ { "commit": "4c2361bde90a556aa5a585d45f056b3ddc806f9b", "type": "git", "url": "https://git.bioconductor.org/packages/gtrellis" } ], "version": "1.32.0" }, { "repositories": [ { "commit": "f813b420a008c459f63a2a13e5e64c5507c4c472", "type": "git", "url": "https://git.bioconductor.org/packages/gtrellis" } ], "version": "1.8.0" } ] }, "r-gviz": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotationdbi", "r-biobase", "r-biocgenerics", "r-biomart", "r-biostrings", "r-biovizbase", "r-bsgenome", "r-digest", "r-ensembldb", "r-genomeinfodb", "r-genomicalignments", "r-genomicfeatures", "r-genomicranges", "r-iranges", "r-lattice", "r-latticeextra", "r-matrixstats", "r-rcolorbrewer", "r-rsamtools", "r-rtracklayer", "r-s4vectors", "r-xvector" ], "downloads": [ "https://git.bioconductor.org/packages/Gviz" ], "homepages": [ "https://bioconductor.org/packages/Gviz" ], "licenses": [ "Artistic-2.0" ], "maintainers": [], "name": "r-gviz", "patches": [], "summary": "Plotting data and annotation information along genomic coordinates.\nGenomic data analyses requires integrated visualization of known genomic\ninformation and new experimental data. Gviz uses the biomaRt and the\nrtracklayer packages to perform live annotation queries to Ensembl and\nUCSC and translates this to e.g. gene/transcript structures in viewports\nof the grid graphics package. This results in genomic information\nplotted together with your data.\n", "version": [ { "repositories": [ { "commit": "299b8255e1b03932cebe287c3690d58c88f5ba5c", "type": "git", "url": "https://git.bioconductor.org/packages/Gviz" } ], "version": "1.20.0" }, { "repositories": [ { "commit": "2238079d0a7017c474f010acb35d98ee7cc1c5d1", "type": "git", "url": "https://git.bioconductor.org/packages/Gviz" } ], "version": "1.22.3" }, { "repositories": [ { "commit": "3ee1eec97a56653c07c434a97f82cfe3c4281841", "type": "git", "url": "https://git.bioconductor.org/packages/Gviz" } ], "version": "1.24.0" }, { "repositories": [ { "commit": "430310b9d2e098f9757a71d26a2f69871071f30c", "type": "git", "url": "https://git.bioconductor.org/packages/Gviz" } ], "version": "1.26.5" }, { "repositories": [ { "commit": "20b9825af144cfc888629c34aa980b5bbd65bf86", "type": "git", "url": "https://git.bioconductor.org/packages/Gviz" } ], "version": "1.28.3" }, { "repositories": [ { "commit": "445fadff2aedd8734580fa908aa47ff1216a8182", "type": "git", "url": "https://git.bioconductor.org/packages/Gviz" } ], "version": "1.34.0" }, { "repositories": [ { "commit": "c4b352a16455a5744533c511e59354977814cb9e", "type": "git", "url": "https://git.bioconductor.org/packages/Gviz" } ], "version": "1.38.3" }, { "repositories": [ { "commit": "d21843710cd05135353de5cd4ce4d35cdd333b7c", "type": "git", "url": "https://git.bioconductor.org/packages/Gviz" } ], "version": "1.40.1" }, { "repositories": [ { "commit": "4eddb688bca3fdeb65fd536d653d7ba7f7976121", "type": "git", "url": "https://git.bioconductor.org/packages/Gviz" } ], "version": "1.42.0" }, { "repositories": [ { "commit": "e70aaa7dd27df8482ee854395475a87ec2121279", "type": "git", "url": "https://git.bioconductor.org/packages/Gviz" } ], "version": "1.44.0" } ] }, "r-gwmodel": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-fnn", "r-maptools", "r-rcpp", "r-rcpparmadillo", "r-rcppeigen", "r-robustbase", "r-sf", "r-sp", "r-spacetime", "r-spatialreg", "r-spdep" ], "downloads": [ "https://cloud.r-project.org/src/contrib/GWmodel_2.3-3.tar.gz", "https://cloud.r-project.org/src/contrib/GWmodel_2.2-9.tar.gz", "https://cloud.r-project.org/src/contrib/GWmodel_2.2-8.tar.gz", "https://cloud.r-project.org/src/contrib/GWmodel_2.2-2.tar.gz", "https://cloud.r-project.org/src/contrib/GWmodel_2.1-3.tar.gz", "https://cloud.r-project.org/src/contrib/GWmodel_2.1-1.tar.gz", "https://cloud.r-project.org/src/contrib/GWmodel_2.0-9.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=GWmodel" ], "licenses": [], "maintainers": [], "name": "r-gwmodel", "patches": [], "summary": "Geographically-Weighted Models. Techniques from a particular branch of\nspatial statistics,termed geographically-weighted (GW) models. GW models\nsuit situations when data are not described well by some global model,\nbut where there are spatial regions where a suitably localised\ncalibration provides a better description. 'GWmodel' includes functions\nto calibrate: GW summary statistics (Brunsdon et al., 2002)\n, GW principal components analysis\n(Harris et al., 2011) , GW\ndiscriminant analysis (Brunsdon et al., 2007)\n and various forms of GW\nregression (Brunsdon et al., 1996)\n; some of which are provided in\nbasic and robust (outlier resistant) forms.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/GWmodel_2.0-9.tar.gz" ], "version": "2.0-9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GWmodel_2.1-1.tar.gz" ], "version": "2.1-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GWmodel_2.1-3.tar.gz" ], "version": "2.1-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GWmodel_2.2-2.tar.gz" ], "version": "2.2-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GWmodel_2.2-8.tar.gz" ], "version": "2.2-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GWmodel_2.2-9.tar.gz" ], "version": "2.2-9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/GWmodel_2.3-3.tar.gz" ], "version": "2.3-3" } ] }, "r-hardhat": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-glue", "r-rlang", "r-tibble", "r-vctrs" ], "downloads": [ "https://cloud.r-project.org/src/contrib/hardhat_1.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/hardhat_1.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/hardhat_1.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/hardhat_1.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/hardhat_0.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=hardhat" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-hardhat", "patches": [], "summary": "Construct Modeling Packages. Building modeling packages is hard. A large\namount of effort generally goes into providing an implementation for a\nnew method that is efficient, fast, and correct, but often less emphasis\nis put on the user interface. A good interface requires specialized\nknowledge about S3 methods and formulas, which the average package\ndeveloper might not have. The goal of 'hardhat' is to reduce the burden\naround building new modeling packages by providing functionality for\npreprocessing, predicting, and validating input.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/hardhat_0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hardhat_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hardhat_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hardhat_1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hardhat_1.4.0.tar.gz" ], "version": "1.4.0" } ] }, "r-haven": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-cli", "r-cpp11", "r-forcats", "r-hms", "r-lifecycle", "r-rcpp", "r-readr", "r-rlang", "r-tibble", "r-tidyselect", "r-vctrs", "zlib-api" ], "downloads": [ "https://cloud.r-project.org/src/contrib/haven_2.5.4.tar.gz", "https://cloud.r-project.org/src/contrib/haven_2.5.3.tar.gz", "https://cloud.r-project.org/src/contrib/haven_2.5.2.tar.gz", "https://cloud.r-project.org/src/contrib/haven_2.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/haven_2.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/haven_2.4.3.tar.gz", "https://cloud.r-project.org/src/contrib/haven_2.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/haven_2.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/haven_2.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/haven_1.1.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=haven" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-haven", "patches": [], "summary": "Import and Export 'SPSS', 'Stata' and 'SAS' Files. Import foreign\nstatistical formats into R via the embedded 'ReadStat' C library,\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/haven_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/haven_2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/haven_2.1.1.tar.gz" ], "version": "2.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/haven_2.3.1.tar.gz" ], "version": "2.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/haven_2.4.3.tar.gz" ], "version": "2.4.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/haven_2.5.0.tar.gz" ], "version": "2.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/haven_2.5.1.tar.gz" ], "version": "2.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/haven_2.5.2.tar.gz" ], "version": "2.5.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/haven_2.5.3.tar.gz" ], "version": "2.5.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/haven_2.5.4.tar.gz" ], "version": "2.5.4" } ] }, "r-hdf5array": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-biocgenerics", "r-delayedarray", "r-iranges", "r-matrix", "r-rhdf5", "r-rhdf5filters", "r-rhdf5lib", "r-s4vectors", "zlib-api" ], "downloads": [ "https://git.bioconductor.org/packages/HDF5Array" ], "homepages": [ "https://bioconductor.org/packages/HDF5Array" ], "licenses": [], "maintainers": [], "name": "r-hdf5array", "patches": [], "summary": "HDF5 backend for DelayedArray objects. Implements the HDF5Array and\nTENxMatrix classes, 2 convenient and memory-efficient array-like\ncontainers for on-disk representation of HDF5 datasets. HDF5Array is for\ndatasets that use the conventional (i.e. dense) HDF5 representation.\nTENxMatrix is for datasets that use the HDF5-based sparse matrix\nrepresentation from 10x Genomics (e.g. the 1.3 Million Brain Cell\nDataset). Both containers being DelayedArray extensions, they support\nall operations supported by DelayedArray objects. These operations can\nbe either delayed or block-processed.\n", "version": [ { "repositories": [ { "commit": "0b8ae1dfb56e4203dd8e14781850370df46a5e2c", "type": "git", "url": "https://git.bioconductor.org/packages/HDF5Array" } ], "version": "1.10.1" }, { "repositories": [ { "commit": "21c6077f3f789748a18f2e579110576c5522e975", "type": "git", "url": "https://git.bioconductor.org/packages/HDF5Array" } ], "version": "1.12.3" }, { "repositories": [ { "commit": "d5bd55d170cb384fdebdf60751e1e28483782caa", "type": "git", "url": "https://git.bioconductor.org/packages/HDF5Array" } ], "version": "1.18.0" }, { "repositories": [ { "commit": "b3f091fbc159609e8e0792d2bf9fbef52c6ceede", "type": "git", "url": "https://git.bioconductor.org/packages/HDF5Array" } ], "version": "1.22.1" }, { "repositories": [ { "commit": "d002fe70c84baaadb62058ce467d6c1ea032d8f5", "type": "git", "url": "https://git.bioconductor.org/packages/HDF5Array" } ], "version": "1.24.1" }, { "repositories": [ { "commit": "fb213ba36631b04dfe754705f701f3a015c4fc82", "type": "git", "url": "https://git.bioconductor.org/packages/HDF5Array" } ], "version": "1.24.2" }, { "repositories": [ { "commit": "38b7bd603f7281245605048d8d57237e00b74d79", "type": "git", "url": "https://git.bioconductor.org/packages/HDF5Array" } ], "version": "1.26.0" }, { "repositories": [ { "commit": "8c839417c4a37c35330bd6f02b79dda9f48e76ae", "type": "git", "url": "https://git.bioconductor.org/packages/HDF5Array" } ], "version": "1.28.0" }, { "repositories": [ { "commit": "79ab96d123c8da8f8ead81f678fe714c0958ff45", "type": "git", "url": "https://git.bioconductor.org/packages/HDF5Array" } ], "version": "1.4.8" }, { "repositories": [ { "commit": "95f2f8d3648143abe9dc77c76340c5edf4114c82", "type": "git", "url": "https://git.bioconductor.org/packages/HDF5Array" } ], "version": "1.6.0" }, { "repositories": [ { "commit": "3c9aa23d117bf489b6341708dc80c943bd1af11a", "type": "git", "url": "https://git.bioconductor.org/packages/HDF5Array" } ], "version": "1.8.1" } ] }, "r-hdf5r": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "hdf5", "pkgconfig", "r", "r-bit64", "r-r6" ], "downloads": [ "https://cloud.r-project.org/src/contrib/hdf5r_1.3.11.tar.gz", "https://cloud.r-project.org/src/contrib/hdf5r_1.3.8.tar.gz", "https://cloud.r-project.org/src/contrib/hdf5r_1.3.7.tar.gz", "https://cloud.r-project.org/src/contrib/hdf5r_1.3.5.tar.gz", "https://cloud.r-project.org/src/contrib/hdf5r_1.3.3.tar.gz", "https://cloud.r-project.org/src/contrib/hdf5r_1.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=hdf5r" ], "licenses": [ "Apache-2.0 OR custom" ], "maintainers": [], "name": "r-hdf5r", "patches": [ "configure.patch when @:1.3.7" ], "summary": "Interface to the 'HDF5' Binary Data Format. 'HDF5' is a data model,\nlibrary and file format for storing and managing large amounts of data.\nThis package provides a nearly feature complete, object oriented wrapper\nfor the 'HDF5' API\n using R6\nclasses. Additionally, functionality is added so that 'HDF5' objects\nbehave very similar to their corresponding R counterparts.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/hdf5r_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hdf5r_1.3.11.tar.gz" ], "version": "1.3.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hdf5r_1.3.3.tar.gz" ], "version": "1.3.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hdf5r_1.3.5.tar.gz" ], "version": "1.3.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hdf5r_1.3.7.tar.gz" ], "version": "1.3.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hdf5r_1.3.8.tar.gz" ], "version": "1.3.8" } ] }, "r-hdo-db": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotationdbi" ], "downloads": [ "https://bioconductor.org/packages/release/data/annotation/src/contrib/HDO.db_0.99.1.tar.gz", "https://git.bioconductor.org/packages/HDO.db" ], "homepages": [ "https://bioconductor.org/packages/HDO.db" ], "licenses": [], "maintainers": [], "name": "r-hdo-db", "patches": [], "summary": "A set of annotation maps describing the entire Human Disease Ontology. A\nset of annotation maps describing the entire Human Disease Ontology\nassembled using data from DO. Its annotation data comes from https://git\nhub.com/DiseaseOntology/HumanDiseaseOntology/tree/main/src/ontology.\n", "version": [ { "downloads": [ "https://bioconductor.org/packages/release/data/annotation/src/contrib/HDO.db_0.99.1.tar.gz" ], "version": "0.99.1" } ] }, "r-hdrcde": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-ash", "r-ggplot2", "r-kernsmooth", "r-ks", "r-locfit", "r-rcolorbrewer" ], "downloads": [ "https://cloud.r-project.org/src/contrib/hdrcde_3.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=hdrcde" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-hdrcde", "patches": [], "summary": "Highest Density Regions and Conditional Density Estimation. Computation\nof highest density regions in one and two dimensions, kernel estimation\nof univariate density functions conditional on one covariate,and\nmultimodal regression.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/hdrcde_3.4.tar.gz" ], "version": "3.4" } ] }, "r-here": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-rprojroot" ], "downloads": [ "https://cloud.r-project.org/src/contrib/here_1.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=here" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-here", "patches": [], "summary": "A Simpler Way to Find Your Files. Constructs paths to your project's\nfiles. Declare the relative path of a file within your project with\n'i_am()'. Use the 'here()' function as a drop-in replacement for\n'file.path()', it will always locate the files relative to your project\nroot.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/here_1.0.1.tar.gz" ], "version": "1.0.1" } ] }, "r-hexbin": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-lattice" ], "downloads": [ "https://cloud.r-project.org/src/contrib/hexbin_1.28.3.tar.gz", "https://cloud.r-project.org/src/contrib/hexbin_1.28.2.tar.gz", "https://cloud.r-project.org/src/contrib/hexbin_1.27.3.tar.gz", "https://cloud.r-project.org/src/contrib/hexbin_1.27.2.tar.gz", "https://cloud.r-project.org/src/contrib/hexbin_1.27.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=hexbin" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-hexbin", "patches": [], "summary": "Hexagonal Binning Routines. Binning and plotting functions for hexagonal\nbins. Now uses and relies on grid graphics and formal (S4) classes and\nmethods.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/hexbin_1.27.1.tar.gz" ], "version": "1.27.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hexbin_1.27.2.tar.gz" ], "version": "1.27.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hexbin_1.27.3.tar.gz" ], "version": "1.27.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hexbin_1.28.2.tar.gz" ], "version": "1.28.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hexbin_1.28.3.tar.gz" ], "version": "1.28.3" } ] }, "r-hh": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-abind", "r-colorspace", "r-gridextra", "r-hmisc", "r-lattice", "r-latticeextra", "r-leaps", "r-multcomp", "r-rcolorbrewer", "r-reshape2", "r-rmpfr", "r-shiny", "r-vcd" ], "downloads": [ "https://cloud.r-project.org/src/contrib/HH_3.1-52.tar.gz", "https://cloud.r-project.org/src/contrib/HH_3.1-49.tar.gz", "https://cloud.r-project.org/src/contrib/HH_3.1-47.tar.gz", "https://cloud.r-project.org/src/contrib/HH_3.1-43.tar.gz", "https://cloud.r-project.org/src/contrib/HH_3.1-40.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=HH" ], "licenses": [], "maintainers": [], "name": "r-hh", "patches": [], "summary": "Statistical Analysis and Data Display: Heiberger and Holland. Support\nsoftware for Statistical Analysis and Data Display (Second Edition,\nSpringer, ISBN 978-1-4939-2121-8, 2015) and (First Edition, Springer,\nISBN 0-387-40270-5, 2004) by Richard M. Heiberger and Burt Holland. This\ncontemporary presentation of statistical methods features extensive use\nof graphical displays for exploring data and for displaying the\nanalysis. The second edition includes redesigned graphics and additional\nchapters. The authors emphasize how to construct and interpret graphs,\ndiscuss principles of graphical design, and show how accompanying\ntraditional tabular results are used to confirm the visual impressions\nderived directly from the graphs. Many of the graphical formats are\nnovel and appear here for the first time in print. All chapters have\nexercises. All functions introduced in the book are in the package. R\ncode for all examples, both graphs and tables, in the book is included\nin the scripts directory of the package.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/HH_3.1-40.tar.gz" ], "version": "3.1-40" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/HH_3.1-43.tar.gz" ], "version": "3.1-43" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/HH_3.1-47.tar.gz" ], "version": "3.1-47" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/HH_3.1-49.tar.gz" ], "version": "3.1-49" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/HH_3.1-52.tar.gz" ], "version": "3.1-52" } ] }, "r-highr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-xfun" ], "downloads": [ "https://cloud.r-project.org/src/contrib/highr_0.11.tar.gz", "https://cloud.r-project.org/src/contrib/highr_0.10.tar.gz", "https://cloud.r-project.org/src/contrib/highr_0.9.tar.gz", "https://cloud.r-project.org/src/contrib/highr_0.8.tar.gz", "https://cloud.r-project.org/src/contrib/highr_0.7.tar.gz", "https://cloud.r-project.org/src/contrib/highr_0.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=highr" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-highr", "patches": [], "summary": "Syntax Highlighting for R Source Code. Provides syntax highlighting for\nR source code. Currently it supports LaTeX and HTML output. Source code\nof other languages is supported via Andre Simon's highlight package.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/highr_0.10.tar.gz" ], "version": "0.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/highr_0.11.tar.gz" ], "version": "0.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/highr_0.6.tar.gz" ], "version": "0.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/highr_0.7.tar.gz" ], "version": "0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/highr_0.8.tar.gz" ], "version": "0.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/highr_0.9.tar.gz" ], "version": "0.9" } ] }, "r-hmisc": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-acepack", "r-base64enc", "r-cluster", "r-colorspace", "r-data-table", "r-foreign", "r-formula", "r-ggplot2", "r-gridextra", "r-gtable", "r-htmltable", "r-htmltools", "r-knitr", "r-lattice", "r-latticeextra", "r-nnet", "r-rmarkdown", "r-rpart", "r-survival", "r-viridis" ], "downloads": [ "https://cloud.r-project.org/src/contrib/Hmisc_5.1-3.tar.gz", "https://cloud.r-project.org/src/contrib/Hmisc_5.0-1.tar.gz", "https://cloud.r-project.org/src/contrib/Hmisc_4.7-1.tar.gz", "https://cloud.r-project.org/src/contrib/Hmisc_4.7-0.tar.gz", "https://cloud.r-project.org/src/contrib/Hmisc_4.6-0.tar.gz", "https://cloud.r-project.org/src/contrib/Hmisc_4.4-2.tar.gz", "https://cloud.r-project.org/src/contrib/Hmisc_4.4-0.tar.gz", "https://cloud.r-project.org/src/contrib/Hmisc_4.2-0.tar.gz", "https://cloud.r-project.org/src/contrib/Hmisc_4.1-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=Hmisc" ], "licenses": [], "maintainers": [], "name": "r-hmisc", "patches": [], "summary": "Harrell Miscellaneous. Contains many functions useful for data analysis,\nhigh-level graphics, utility operations, functions for computing sample\nsize and power, importing and annotating datasets, imputing missing\nvalues, advanced table making, variable clustering, character string\nmanipulation, conversion of R objects to LaTeX and html code, and\nrecoding variables.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/Hmisc_4.1-1.tar.gz" ], "version": "4.1-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Hmisc_4.2-0.tar.gz" ], "version": "4.2-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Hmisc_4.4-0.tar.gz" ], "version": "4.4-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Hmisc_4.4-2.tar.gz" ], "version": "4.4-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Hmisc_4.6-0.tar.gz" ], "version": "4.6-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Hmisc_4.7-0.tar.gz" ], "version": "4.7-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Hmisc_4.7-1.tar.gz" ], "version": "4.7-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Hmisc_5.0-1.tar.gz" ], "version": "5.0-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Hmisc_5.1-3.tar.gz" ], "version": "5.1-3" } ] }, "r-hms": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ellipsis", "r-lifecycle", "r-pkgconfig", "r-rlang", "r-vctrs" ], "downloads": [ "https://cloud.r-project.org/src/contrib/hms_1.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/hms_1.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/hms_1.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/hms_1.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/hms_0.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/hms_0.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=hms" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-hms", "patches": [], "summary": "Pretty Time of Day. Implements an S3 class for storing and formatting\ntime-of-day values, based on the 'difftime' class.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/hms_0.3.tar.gz" ], "version": "0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hms_0.5.0.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hms_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hms_1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hms_1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hms_1.1.3.tar.gz" ], "version": "1.1.3" } ] }, "r-hoardr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-digest", "r-r6", "r-rappdirs" ], "downloads": [ "https://cloud.r-project.org/src/contrib/hoardr_0.5.4.tar.gz", "https://cloud.r-project.org/src/contrib/hoardr_0.5.3.tar.gz", "https://cloud.r-project.org/src/contrib/hoardr_0.5.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=hoardr" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-hoardr", "patches": [], "summary": "Manage Cached Files. Suite of tools for managing cached files, targeting\nuse in other R packages. Uses 'rappdirs' for cross-platform paths.\nProvides utilities to manage cache directories, including targeting\nfiles by path or by key; cached directories can be compressed and\nuncompressed easily to save disk space.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/hoardr_0.5.2.tar.gz" ], "version": "0.5.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hoardr_0.5.3.tar.gz" ], "version": "0.5.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hoardr_0.5.4.tar.gz" ], "version": "0.5.4" } ] }, "r-htmltable": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-checkmate", "r-htmltools", "r-htmlwidgets", "r-knitr", "r-magrittr", "r-rstudioapi", "r-stringr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/htmlTable_2.4.3.tar.gz", "https://cloud.r-project.org/src/contrib/htmlTable_2.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/htmlTable_2.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/htmlTable_2.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/htmlTable_1.13.1.tar.gz", "https://cloud.r-project.org/src/contrib/htmlTable_1.11.2.tar.gz", "https://cloud.r-project.org/src/contrib/htmlTable_1.9.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=htmlTable" ], "licenses": [], "maintainers": [], "name": "r-htmltable", "patches": [], "summary": "Advanced Tables for Markdown/HTML. Tables with state-of-the-art layout\nelements such as row spanners, column spanners, table spanners, zebra\nstriping, and more. While allowing advanced layout, the underlying css-\nstructure is simple in order to maximize compatibility with word\nprocessors such as 'MS Word' or 'LibreOffice'. The package also contains\na few text formatting functions that help outputting text compatible\nwith HTML/'LaTeX'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/htmlTable_1.11.2.tar.gz" ], "version": "1.11.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/htmlTable_1.13.1.tar.gz" ], "version": "1.13.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/htmlTable_1.9.tar.gz" ], "version": "1.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/htmlTable_2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/htmlTable_2.4.0.tar.gz" ], "version": "2.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/htmlTable_2.4.1.tar.gz" ], "version": "2.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/htmlTable_2.4.3.tar.gz" ], "version": "2.4.3" } ] }, "r-htmltools": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-base64enc", "r-digest", "r-ellipsis", "r-fastmap", "r-rcpp", "r-rlang" ], "downloads": [ "https://cloud.r-project.org/src/contrib/htmltools_0.5.8.1.tar.gz", "https://cloud.r-project.org/src/contrib/htmltools_0.5.5.tar.gz", "https://cloud.r-project.org/src/contrib/htmltools_0.5.3.tar.gz", "https://cloud.r-project.org/src/contrib/htmltools_0.5.2.tar.gz", "https://cloud.r-project.org/src/contrib/htmltools_0.5.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/htmltools_0.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/htmltools_0.3.6.tar.gz", "https://cloud.r-project.org/src/contrib/htmltools_0.3.5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=htmltools" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-htmltools", "patches": [], "summary": "Tools for HTML. Tools for HTML generation and output.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/htmltools_0.3.5.tar.gz" ], "version": "0.3.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/htmltools_0.3.6.tar.gz" ], "version": "0.3.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/htmltools_0.5.1.tar.gz" ], "version": "0.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/htmltools_0.5.1.1.tar.gz" ], "version": "0.5.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/htmltools_0.5.2.tar.gz" ], "version": "0.5.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/htmltools_0.5.3.tar.gz" ], "version": "0.5.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/htmltools_0.5.5.tar.gz" ], "version": "0.5.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/htmltools_0.5.8.1.tar.gz" ], "version": "0.5.8.1" } ] }, "r-htmlwidgets": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-htmltools", "r-jsonlite", "r-knitr", "r-rmarkdown", "r-yaml" ], "downloads": [ "https://cloud.r-project.org/src/contrib/htmlwidgets_1.6.4.tar.gz", "https://cloud.r-project.org/src/contrib/htmlwidgets_1.6.2.tar.gz", "https://cloud.r-project.org/src/contrib/htmlwidgets_1.5.4.tar.gz", "https://cloud.r-project.org/src/contrib/htmlwidgets_1.5.3.tar.gz", "https://cloud.r-project.org/src/contrib/htmlwidgets_1.3.tar.gz", "https://cloud.r-project.org/src/contrib/htmlwidgets_0.9.tar.gz", "https://cloud.r-project.org/src/contrib/htmlwidgets_0.8.tar.gz", "https://cloud.r-project.org/src/contrib/htmlwidgets_0.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=htmlwidgets" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-htmlwidgets", "patches": [], "summary": "HTML Widgets for R. A framework for creating HTML widgets that render in\nvarious contexts including the R console, 'R Markdown' documents, and\n'Shiny' web applications.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/htmlwidgets_0.6.tar.gz" ], "version": "0.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/htmlwidgets_0.8.tar.gz" ], "version": "0.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/htmlwidgets_0.9.tar.gz" ], "version": "0.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/htmlwidgets_1.3.tar.gz" ], "version": "1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/htmlwidgets_1.5.3.tar.gz" ], "version": "1.5.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/htmlwidgets_1.5.4.tar.gz" ], "version": "1.5.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/htmlwidgets_1.6.2.tar.gz" ], "version": "1.6.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/htmlwidgets_1.6.4.tar.gz" ], "version": "1.6.4" } ] }, "r-httpcode": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/httpcode_0.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/httpcode_0.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=httpcode" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-httpcode", "patches": [], "summary": "'HTTP' Status Code Helper. Find and explain the meaning of 'HTTP' status\ncodes. Functions included for searching for codes by full or partial\nnumber, by message, and get appropriate dog and cat images for many\nstatus codes.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/httpcode_0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/httpcode_0.3.0.tar.gz" ], "version": "0.3.0" } ] }, "r-httpuv": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-bh", "r-later", "r-promises", "r-r6", "r-rcpp", "zip", "zlib-api" ], "downloads": [ "https://cloud.r-project.org/src/contrib/httpuv_1.6.15.tar.gz", "https://cloud.r-project.org/src/contrib/httpuv_1.6.9.tar.gz", "https://cloud.r-project.org/src/contrib/httpuv_1.6.6.tar.gz", "https://cloud.r-project.org/src/contrib/httpuv_1.6.5.tar.gz", "https://cloud.r-project.org/src/contrib/httpuv_1.5.5.tar.gz", "https://cloud.r-project.org/src/contrib/httpuv_1.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/httpuv_1.3.5.tar.gz", "https://cloud.r-project.org/src/contrib/httpuv_1.3.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=httpuv" ], "licenses": [ "GPL-2.0-or-later OR custom" ], "maintainers": [], "name": "r-httpuv", "patches": [], "summary": "HTTP and WebSocket Server Library. Provides low-level socket and\nprotocol support for handling HTTP and WebSocket requests directly from\nwithin R. It is primarily intended as a building block for other\npackages, rather than making it particularly easy to create complete web\napplications using httpuv alone. httpuv is built on top of the libuv and\nhttp-parser C libraries, both of which were developed by Joyent, Inc.\n(See LICENSE file for libuv and http-parser license information.)\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/httpuv_1.3.3.tar.gz" ], "version": "1.3.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/httpuv_1.3.5.tar.gz" ], "version": "1.3.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/httpuv_1.5.1.tar.gz" ], "version": "1.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/httpuv_1.5.5.tar.gz" ], "version": "1.5.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/httpuv_1.6.15.tar.gz" ], "version": "1.6.15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/httpuv_1.6.5.tar.gz" ], "version": "1.6.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/httpuv_1.6.6.tar.gz" ], "version": "1.6.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/httpuv_1.6.9.tar.gz" ], "version": "1.6.9" } ] }, "r-httr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-curl", "r-jsonlite", "r-mime", "r-openssl", "r-r6" ], "downloads": [ "https://cloud.r-project.org/src/contrib/httr_1.4.7.tar.gz", "https://cloud.r-project.org/src/contrib/httr_1.4.5.tar.gz", "https://cloud.r-project.org/src/contrib/httr_1.4.4.tar.gz", "https://cloud.r-project.org/src/contrib/httr_1.4.3.tar.gz", "https://cloud.r-project.org/src/contrib/httr_1.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/httr_1.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/httr_1.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/httr_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/httr_1.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/httr_1.1.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=httr" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-httr", "patches": [], "summary": "Tools for Working with URLs and HTTP. Useful tools for working with HTTP\norganised by HTTP verbs (GET(), POST(), etc). Configuration functions\nmake it easy to control additional request components (authenticate(),\nadd_headers() and so on).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/httr_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/httr_1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/httr_1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/httr_1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/httr_1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/httr_1.4.2.tar.gz" ], "version": "1.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/httr_1.4.3.tar.gz" ], "version": "1.4.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/httr_1.4.4.tar.gz" ], "version": "1.4.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/httr_1.4.5.tar.gz" ], "version": "1.4.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/httr_1.4.7.tar.gz" ], "version": "1.4.7" } ] }, "r-httr2": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-curl", "r-glue", "r-lifecycle", "r-magrittr", "r-openssl", "r-r6", "r-rappdirs", "r-rlang", "r-vctrs", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/httr2_1.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/httr2_0.2.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=httr2" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-httr2", "patches": [], "summary": "Perform HTTP Requests and Process the Responses. Tools for creating and\nmodifying HTTP requests, then performing them and processing the\nresults. 'httr2' is a modern re-imagining of 'httr' that uses a pipe-\nbased interface and solves more of the problems that API wrapping\npackages face.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/httr2_0.2.2.tar.gz" ], "version": "0.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/httr2_1.0.2.tar.gz" ], "version": "1.0.2" } ] }, "r-humaniformat": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/humaniformat_0.6.0.tar.gz", "https://cloud.r-project.org/src/contrib/humaniformat_0.5.0.tar.gz", null ], "homepages": [ "https://github.com/Ironholds/humaniformat" ], "licenses": [ "MIT" ], "maintainers": [ "jgaeb" ], "name": "r-humaniformat", "patches": [], "summary": "A Parser for Human Names Human names are complicated and nonstandard\nthings. Humaniformat, which is based on Anthony Ettinger's 'humanparser'\nproject (https://github.com/chovy/humanparser) provides functions for\nparsing human names, making a best- guess attempt to distinguish sub-\ncomponents such as prefixes, suffixes, middle names and salutations.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/humaniformat_0.5.0.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/humaniformat_0.6.0.tar.gz" ], "version": "0.6.0" } ] }, "r-hwriter": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/hwriter_1.3.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/hwriter_1.3.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=hwriter" ], "licenses": [ "LGPL-2.1-only" ], "maintainers": [], "name": "r-hwriter", "patches": [], "summary": "HTML Writer - Outputs R objects in HTML format. Easy-to-use and\nversatile functions to output R objects in HTML format.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/hwriter_1.3.2.tar.gz" ], "version": "1.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hwriter_1.3.2.1.tar.gz" ], "version": "1.3.2.1" } ] }, "r-hydrogof": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-hydrotsm", "r-xts", "r-zoo" ], "downloads": [ "https://cloud.r-project.org/src/contrib/hydroGOF_0.6-0.tar.gz", "https://cloud.r-project.org/src/contrib/hydroGOF_0.4-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=hydroGOF" ], "licenses": [], "maintainers": [], "name": "r-hydrogof", "patches": [], "summary": "Goodness-of-Fit Functions for Comparison of Simulated and Observed\nHydrological Time Series. S3 functions implementing both statistical and\ngraphical goodness-of-fit measures between observed and simulated\nvalues, mainly oriented to be used during the calibration, validation,\nand application of hydrological models. Missing values in observed\nand/or simulated values can be removed before computations. Comments /\nquestions / collaboration of any kind are very welcomed.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/hydroGOF_0.4-0.tar.gz" ], "version": "0.4-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hydroGOF_0.6-0.tar.gz" ], "version": "0.6-0" } ] }, "r-hydrotsm": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-automap", "r-classint", "r-e1071", "r-gstat", "r-lattice", "r-maptools", "r-sp", "r-xts", "r-zoo" ], "downloads": [ "https://cloud.r-project.org/src/contrib/hydroTSM_0.7-0.tar.gz", "https://cloud.r-project.org/src/contrib/hydroTSM_0.6-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=hydroTSM" ], "licenses": [], "maintainers": [], "name": "r-hydrotsm", "patches": [], "summary": "Time Series Management, Analysis and Interpolation for Hydrological\nModelling. S3 functions for management, analysis, interpolation and\nplotting of time series used in hydrology and related environmental\nsciences. In particular, this package is highly oriented to hydrological\nmodelling tasks. The focus of this package has been put in providing a\ncollection of tools useful for the daily work of hydrologists (although\nan effort was made to optimise each function as much as possible,\nfunctionality has had priority over speed). Bugs / comments / questions\n/ collaboration of any kind are very welcomed, and in particular,\ndatasets that can be included in this package for academic purposes.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/hydroTSM_0.6-0.tar.gz" ], "version": "0.6-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/hydroTSM_0.7-0.tar.gz" ], "version": "0.7-0" } ] }, "r-hypergraph": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-graph" ], "downloads": [ "https://git.bioconductor.org/packages/hypergraph" ], "homepages": [ "https://bioconductor.org/packages/hypergraph" ], "licenses": [], "maintainers": [], "name": "r-hypergraph", "patches": [], "summary": "A package providing hypergraph data structures. A package that\nimplements some simple capabilities for representing and manipulating\nhypergraphs.\n", "version": [ { "repositories": [ { "commit": "a4c19ea0b5f15204f706a7bfdea5363706382820", "type": "git", "url": "https://git.bioconductor.org/packages/hypergraph" } ], "version": "1.48.0" }, { "repositories": [ { "commit": "fb3d523caf1d5791ef6962dd3c1a142742025ad5", "type": "git", "url": "https://git.bioconductor.org/packages/hypergraph" } ], "version": "1.50.0" }, { "repositories": [ { "commit": "3e28d8e8ab4c3facb79857b4e4cfffd65e064aca", "type": "git", "url": "https://git.bioconductor.org/packages/hypergraph" } ], "version": "1.52.0" }, { "repositories": [ { "commit": "cf134b9221e9b5f6329a6786a366f57426c49e7c", "type": "git", "url": "https://git.bioconductor.org/packages/hypergraph" } ], "version": "1.54.0" }, { "repositories": [ { "commit": "f8b977fe068f15ecea49d30e77a871a35afcb97b", "type": "git", "url": "https://git.bioconductor.org/packages/hypergraph" } ], "version": "1.56.0" }, { "repositories": [ { "commit": "a286bbb70289e9f3cdf41407d52e5976bd6ed11e", "type": "git", "url": "https://git.bioconductor.org/packages/hypergraph" } ], "version": "1.62.0" }, { "repositories": [ { "commit": "e9c47336df6409006622818f541f258103163a39", "type": "git", "url": "https://git.bioconductor.org/packages/hypergraph" } ], "version": "1.66.0" }, { "repositories": [ { "commit": "7d53b5050f4ebe0a7007c02b76e93498195da3a4", "type": "git", "url": "https://git.bioconductor.org/packages/hypergraph" } ], "version": "1.68.0" }, { "repositories": [ { "commit": "a5ffeafa8b999b5e7e77f93f4e6284abafc81621", "type": "git", "url": "https://git.bioconductor.org/packages/hypergraph" } ], "version": "1.70.0" }, { "repositories": [ { "commit": "1b619b8dfeaf13dca7857013495d52dcfe4276b4", "type": "git", "url": "https://git.bioconductor.org/packages/hypergraph" } ], "version": "1.72.0" } ] }, "r-ica": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ica_1.0-3.tar.gz", "https://cloud.r-project.org/src/contrib/ica_1.0-2.tar.gz", "https://cloud.r-project.org/src/contrib/ica_1.0-1.tar.gz", "https://cloud.r-project.org/src/contrib/ica_1.0-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ica" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-ica", "patches": [], "summary": "Independent Component Analysis. 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The interactiveDisplayBase package contains the the basic\nmethods needed to generate interactive Shiny based display methods for\nBioconductor objects.\n", "version": [ { "repositories": [ { "commit": "e2ccc7eefdd904e3b1032dc6b3f4a28d08c1cd40", "type": "git", "url": "https://git.bioconductor.org/packages/interactiveDisplayBase" } ], "version": "1.14.0" }, { "repositories": [ { "commit": "a86aa586b589497f5449d36c2ce67a6b6055026d", "type": "git", "url": "https://git.bioconductor.org/packages/interactiveDisplayBase" } ], "version": "1.16.0" }, { "repositories": [ { "commit": "d07ea72a595877f27bf054f664f23e8f0304def8", "type": "git", "url": "https://git.bioconductor.org/packages/interactiveDisplayBase" } ], "version": "1.18.0" }, { "repositories": [ { "commit": "f40912c8af7afbaaf68c003a6e148d81cbe84df6", "type": "git", "url": "https://git.bioconductor.org/packages/interactiveDisplayBase" } ], "version": "1.20.0" }, { "repositories": [ { "commit": "4ce3cde1dabc01375c153ad614d77a5e28b96916", "type": "git", "url": "https://git.bioconductor.org/packages/interactiveDisplayBase" } ], "version": "1.22.0" }, { "repositories": [ { "commit": "a74c02c971c4f9c7086e14abd23f1a4190da4599", "type": "git", "url": "https://git.bioconductor.org/packages/interactiveDisplayBase" } ], "version": "1.28.0" }, { "repositories": [ { "commit": "0f88b2ac3689d51abb6ac0045b3207ca77963a5a", "type": "git", "url": "https://git.bioconductor.org/packages/interactiveDisplayBase" } ], "version": "1.32.0" }, { "repositories": [ { "commit": "fafbb13a42bb7549f17aa08cdb0e51728c5e825e", "type": "git", "url": "https://git.bioconductor.org/packages/interactiveDisplayBase" } ], "version": "1.34.0" }, { "repositories": [ { "commit": "79a0552bd467367866ceda2efc2b60a04a81f5fb", "type": "git", "url": "https://git.bioconductor.org/packages/interactiveDisplayBase" } ], "version": "1.36.0" }, { "repositories": [ { "commit": "3b3a3fdc4bafca767ae66c5f8869e2d93a9a4cb3", "type": "git", "url": "https://git.bioconductor.org/packages/interactiveDisplayBase" } ], "version": "1.38.0" } ] }, "r-interp": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "fortran", "gmake", "r", "r-deldir", "r-rcpp", "r-rcppeigen" ], "downloads": [ "https://cloud.r-project.org/src/contrib/interp_1.1-6.tar.gz", "https://cloud.r-project.org/src/contrib/interp_1.1-4.tar.gz", "https://cloud.r-project.org/src/contrib/interp_1.1-3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=interp" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-interp", "patches": [], "summary": "Interpolation Methods. Bivariate data interpolation on regular and\nirregular grids, either linear or using splines are the main part of\nthis package. It is intended to provide FOSS replacement functions for\nthe ACM licensed akima::interp and tripack::tri.mesh functions. Linear\ninterpolation is implemented in interp::interp(..., method=\"linear\"),\nthis corresponds to the call akima::interp(..., linear=TRUE) which is\nthe default setting and covers most of akima::interp use cases in\ndepending packages. A re-implementation of Akimas irregular grid spline\ninterpolation (akima::interp(..., linear=FALSE)) is now also available\nvia interp::interp(..., method=\"akima\"). Estimators for partial\nderivatives are now also available in interp::locpoly(), these are a\nprerequisite for the spline interpolation. The basic part is a GPLed\ntriangulation algorithm (sweep hull algorithm by David Sinclair)\nproviding the starting point for the irregular grid interpolator. As\nside effect this algorithm is also used to provide replacements for\nalmost all functions of the tripack package which also suffers from the\nsame ACM license restrictions. All functions are designed to be backward\ncompatible with their akima / tripack counterparts.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/interp_1.1-3.tar.gz" ], "version": "1.1-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/interp_1.1-4.tar.gz" ], "version": "1.1-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/interp_1.1-6.tar.gz" ], "version": "1.1-6" } ] }, "r-intervals": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/intervals_0.15.4.tar.gz", "https://cloud.r-project.org/src/contrib/intervals_0.15.3.tar.gz", "https://cloud.r-project.org/src/contrib/intervals_0.15.2.tar.gz", "https://cloud.r-project.org/src/contrib/intervals_0.15.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=intervals" ], "licenses": [ "Artistic-2.0" ], "maintainers": [], "name": "r-intervals", "patches": [], "summary": "Tools for working with and comparing sets of points and intervals.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/intervals_0.15.1.tar.gz" ], "version": "0.15.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/intervals_0.15.2.tar.gz" ], "version": "0.15.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/intervals_0.15.3.tar.gz" ], "version": "0.15.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/intervals_0.15.4.tar.gz" ], "version": "0.15.4" } ] }, "r-inum": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-libcoin" ], "downloads": [ "https://cloud.r-project.org/src/contrib/inum_1.0-5.tar.gz", "https://cloud.r-project.org/src/contrib/inum_1.0-4.tar.gz", "https://cloud.r-project.org/src/contrib/inum_1.0-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=inum" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-inum", "patches": [], "summary": "Interval and Enum-Type Representation of Vectors. Enum-type\nrepresentation of vectors and representation of intervals, including a\nmethod of coercing variables in data frames.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/inum_1.0-1.tar.gz" ], "version": "1.0-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/inum_1.0-4.tar.gz" ], "version": "1.0-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/inum_1.0-5.tar.gz" ], "version": "1.0-5" } ] }, "r-ipred": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-class", "r-mass", "r-nnet", "r-prodlim", "r-rpart", "r-survival" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ipred_0.9-15.tar.gz", "https://cloud.r-project.org/src/contrib/ipred_0.9-14.tar.gz", "https://cloud.r-project.org/src/contrib/ipred_0.9-13.tar.gz", "https://cloud.r-project.org/src/contrib/ipred_0.9-12.tar.gz", "https://cloud.r-project.org/src/contrib/ipred_0.9-9.tar.gz", "https://cloud.r-project.org/src/contrib/ipred_0.9-8.tar.gz", "https://cloud.r-project.org/src/contrib/ipred_0.9-5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ipred" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-ipred", "patches": [], "summary": "Improved Predictors. Improved predictive models by indirect\nclassification and bagging for classification, regression and survival\nproblems as well as resampling based estimators of prediction error.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ipred_0.9-12.tar.gz" ], "version": "0.9-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ipred_0.9-13.tar.gz" ], "version": "0.9-13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ipred_0.9-14.tar.gz" ], "version": "0.9-14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ipred_0.9-15.tar.gz" ], "version": "0.9-15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ipred_0.9-5.tar.gz" ], "version": "0.9-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ipred_0.9-8.tar.gz" ], "version": "0.9-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ipred_0.9-9.tar.gz" ], "version": "0.9-9" } ] }, "r-iranges": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-biocgenerics", "r-s4vectors" ], "downloads": [ "https://git.bioconductor.org/packages/IRanges" ], "homepages": [ "https://bioconductor.org/packages/IRanges" ], "licenses": [], "maintainers": [], "name": "r-iranges", "patches": [], "summary": "Foundation of integer range manipulation in Bioconductor. Provides\nefficient low-level and highly reusable S4 classes for storing,\nmanipulating and aggregating over annotated ranges of integers.\nImplements an algebra of range operations, including efficient\nalgorithms for finding overlaps and nearest neighbors. Defines efficient\nlist-like classes for storing, transforming and aggregating large\ngrouped data, i.e., collections of atomic vectors and DataFrames.\n", "version": [ { "repositories": [ { "commit": "b00d1d5025e3c480d17c13100f0da5a0132b1614", "type": "git", "url": "https://git.bioconductor.org/packages/IRanges" } ], "version": "2.10.5" }, { "repositories": [ { "commit": "1b1748655a8529ba87ad0f223f035ef0c08e7fcd", "type": "git", "url": "https://git.bioconductor.org/packages/IRanges" } ], "version": "2.12.0" }, { "repositories": [ { "commit": "00af02756c14771a23df9efcf379409ab6eb3041", "type": "git", "url": "https://git.bioconductor.org/packages/IRanges" } ], "version": "2.14.12" }, { "repositories": [ { "commit": "26834c6868d7c279dd8ac1bb9daa16e6fef273c2", "type": "git", "url": "https://git.bioconductor.org/packages/IRanges" } ], "version": "2.16.0" }, { "repositories": [ { "commit": "c98a7ba074e72f2e5ec98252dffe9d3392711972", "type": "git", "url": "https://git.bioconductor.org/packages/IRanges" } ], "version": "2.18.3" }, { "repositories": [ { "commit": "8c5e99131c419224f92921b9a13255b705a293ad", "type": "git", "url": "https://git.bioconductor.org/packages/IRanges" } ], "version": "2.22.2" }, { "repositories": [ { "commit": "6c61fddf4c5830f69a0f7f108888c67cd0a12b19", "type": "git", "url": "https://git.bioconductor.org/packages/IRanges" } ], "version": "2.24.1" }, { "repositories": [ { "commit": "d85ee908a379e12d1e32599e999c71ab37c25e57", "type": "git", "url": "https://git.bioconductor.org/packages/IRanges" } ], "version": "2.28.0" }, { "repositories": [ { "commit": "9b5f3ca12812fb76c23b1550aa3a794384384d9b", "type": "git", "url": "https://git.bioconductor.org/packages/IRanges" } ], "version": "2.30.0" }, { "repositories": [ { "commit": "ead506a14d6cc89ac2f14b55a4b04496755e4e50", "type": "git", "url": "https://git.bioconductor.org/packages/IRanges" } ], "version": "2.30.1" }, { "repositories": [ { "commit": "2b5c9fc706c8cdc96f0c46508087863df1502f81", "type": "git", "url": "https://git.bioconductor.org/packages/IRanges" } ], "version": "2.32.0" }, { "repositories": [ { "commit": "dcddf934384e05dccffb2a8a808147c963ff0c3e", "type": "git", "url": "https://git.bioconductor.org/packages/IRanges" } ], "version": "2.34.0" } ] }, "r-irdisplay": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-repr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/IRdisplay_1.1.tar.gz", "https://cloud.r-project.org/src/contrib/IRdisplay_0.7.0.tar.gz", "https://cloud.r-project.org/src/contrib/IRdisplay_0.4.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=IRdisplay" ], "licenses": [], "maintainers": [], "name": "r-irdisplay", "patches": [], "summary": "'Jupyter' Display Machinery. An interface to the rich display\ncapabilities of 'Jupyter' front-ends (e.g. 'Jupyter Notebook')\n. Designed to be used from a running 'IRkernel'\nsession .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/IRdisplay_0.4.4.tar.gz" ], "version": "0.4.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/IRdisplay_0.7.0.tar.gz" ], "version": "0.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/IRdisplay_1.1.tar.gz" ], "version": "1.1" } ] }, "r-irkernel": { "alias": [], "categories": [], "dependencies": [ "gmake", "py-jupyter-client", "r", "r-crayon", "r-devtools", "r-digest", "r-evaluate", "r-irdisplay", "r-jsonlite", "r-pbdzmq", "r-repr", "r-uuid" ], "downloads": [ "https://cloud.r-project.org/src/contrib/IRkernel_1.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/IRkernel_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/IRkernel_1.3.tar.gz", "https://cloud.r-project.org/src/contrib/IRkernel_1.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=IRkernel" ], "licenses": [], "maintainers": [], "name": "r-irkernel", "patches": [], "summary": "Native R Kernel for the 'Jupyter Notebook'. The R kernel for the\n'Jupyter' environment executes R code which the front-end ('Jupyter\nNotebook' or other front-ends) submits to the kernel via the network.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/IRkernel_1.2.tar.gz" ], "version": "1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/IRkernel_1.3.tar.gz" ], "version": "1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/IRkernel_1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/IRkernel_1.3.2.tar.gz" ], "version": "1.3.2" } ] }, "r-irlba": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-matrix" ], "downloads": [ "https://cloud.r-project.org/src/contrib/irlba_2.3.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/irlba_2.3.5.tar.gz", "https://cloud.r-project.org/src/contrib/irlba_2.3.3.tar.gz", "https://cloud.r-project.org/src/contrib/irlba_2.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/irlba_2.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/irlba_2.0.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=irlba" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-irlba", "patches": [], "summary": "Fast Truncated Singular Value Decomposition and Principal Components\nAnalysis for Large Dense and Sparse Matrices. Fast and memory efficient\nmethods for truncated singular value decomposition and principal\ncomponents analysis of large sparse and dense matrices.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/irlba_2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/irlba_2.1.2.tar.gz" ], "version": "2.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/irlba_2.3.2.tar.gz" ], "version": "2.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/irlba_2.3.3.tar.gz" ], "version": "2.3.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/irlba_2.3.5.tar.gz" ], "version": "2.3.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/irlba_2.3.5.1.tar.gz" ], "version": "2.3.5.1" } ] }, "r-isdparser": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-data-table", "r-lubridate", "r-tibble" ], "downloads": [ "https://cloud.r-project.org/src/contrib/isdparser_0.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/isdparser_0.3.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=isdparser" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-isdparser", "patches": [], "summary": "Parse 'NOAA' Integrated Surface Data Files. Tools for parsing 'NOAA'\nIntegrated Surface Data ('ISD') files, described at\n. Data includes for example, wind speed\nand direction, temperature, cloud data, sea level pressure, and more.\nIncludes data from approximately 35,000 stations worldwide, though best\ncoverage is in North America/Europe/Australia. Data is stored as\nvariable length ASCII character strings, with most fields optional.\nIncluded are tools for parsing entire files, or individual lines of\ndata.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/isdparser_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/isdparser_0.4.0.tar.gz" ], "version": "0.4.0" } ] }, "r-islr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ISLR_1.4.tar.gz", "https://cloud.r-project.org/src/contrib/ISLR_1.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ISLR" ], "licenses": [], "maintainers": [], "name": "r-islr", "patches": [], "summary": "Data for an Introduction to Statistical Learning with Applications in R.\nWe provide the collection of data-sets used in the book 'An Introduction\nto Statistical Learning with Applications in R'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ISLR_1.2.tar.gz" ], "version": "1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ISLR_1.4.tar.gz" ], "version": "1.4" } ] }, "r-iso": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/Iso_0.0-21.tar.gz", "https://cloud.r-project.org/src/contrib/Iso_0.0-18.1.tar.gz", "https://cloud.r-project.org/src/contrib/Iso_0.0-18.tar.gz", "https://cloud.r-project.org/src/contrib/Iso_0.0-17.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=Iso" ], "licenses": [], "maintainers": [], "name": "r-iso", "patches": [], "summary": "Functions to Perform Isotonic Regression. Linear order and unimodal\norder (univariate) isotonic regression; bivariate isotonic regression\nwith linear order on both variables.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/Iso_0.0-17.tar.gz" ], "version": "0.0-17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Iso_0.0-18.tar.gz" ], "version": "0.0-18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Iso_0.0-18.1.tar.gz" ], "version": "0.0-18.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Iso_0.0-21.tar.gz" ], "version": "0.0-21" } ] }, "r-isoband": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-testthat" ], "downloads": [ "https://cloud.r-project.org/src/contrib/isoband_0.2.7.tar.gz", "https://cloud.r-project.org/src/contrib/isoband_0.2.6.tar.gz", "https://cloud.r-project.org/src/contrib/isoband_0.2.5.tar.gz", "https://cloud.r-project.org/src/contrib/isoband_0.2.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=isoband" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-isoband", "patches": [], "summary": "Generate Isolines and Isobands from Regularly Spaced Elevation Grids. A\nfast C++ implementation to generate contour lines (isolines) and contour\npolygons (isobands) from regularly spaced grids containing elevation\ndata.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/isoband_0.2.3.tar.gz" ], "version": "0.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/isoband_0.2.5.tar.gz" ], "version": "0.2.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/isoband_0.2.6.tar.gz" ], "version": "0.2.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/isoband_0.2.7.tar.gz" ], "version": "0.2.7" } ] }, "r-isva": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-fastica", "r-jade", "r-qvalue" ], "downloads": [ "https://cloud.r-project.org/src/contrib/isva_1.9.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=isva" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-isva", "patches": [], "summary": "Independent Surrogate Variable Analysis. Independent Surrogate Variable\nAnalysis is an algorithm for feature selection in the presence of\npotential confounding factors (see Teschendorff AE et al 2011,\n).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/isva_1.9.tar.gz" ], "version": "1.9" } ] }, "r-iterators": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/iterators_1.0.14.tar.gz", "https://cloud.r-project.org/src/contrib/iterators_1.0.13.tar.gz", "https://cloud.r-project.org/src/contrib/iterators_1.0.12.tar.gz", "https://cloud.r-project.org/src/contrib/iterators_1.0.9.tar.gz", "https://cloud.r-project.org/src/contrib/iterators_1.0.8.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=iterators" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "r-iterators", "patches": [], "summary": "Provides Iterator Construct. Support for iterators, which allow a\nprogrammer to traverse through all the elements of a vector, list, or\nother collection of data.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/iterators_1.0.12.tar.gz" ], "version": "1.0.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/iterators_1.0.13.tar.gz" ], "version": "1.0.13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/iterators_1.0.14.tar.gz" ], "version": "1.0.14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/iterators_1.0.8.tar.gz" ], "version": "1.0.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/iterators_1.0.9.tar.gz" ], "version": "1.0.9" } ] }, "r-iterpc": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-arrangements", "r-gmp", "r-iterators" ], "downloads": [ "https://cloud.r-project.org/src/contrib/iterpc_0.4.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=iterpc" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-iterpc", "patches": [], "summary": "Efficient Iterator for Permutations and Combinations. Iterator for\ngenerating permutations and combinations. They can be either drawn with\nor without replacement, or with distinct/ non-distinct items (multiset).\nThe generated sequences are in lexicographical order (dictionary order).\nThe algorithms to generate permutations and combinations are memory\nefficient. These iterative algorithms enable users to process all\nsequences without putting all results in the memory at the same time.\nThe algorithms are written in C/C++ for faster performance. Note:\n'iterpc' is no longer being maintained. Users are recommended to switch\nto 'arrangements'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/iterpc_0.4.2.tar.gz" ], "version": "0.4.2" } ] }, "r-jade": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-clue" ], "downloads": [ "https://cloud.r-project.org/src/contrib/JADE_2.0-4.tar.gz", "https://cloud.r-project.org/src/contrib/JADE_2.0-3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=JADE" ], "licenses": [], "maintainers": [], "name": "r-jade", "patches": [], "summary": "Blind Source Separation Methods Based on Joint Diagonalization and Some\nBSS Performance Criteria. Cardoso's JADE algorithm as well as his\nfunctions for joint diagonalization are ported to R. Also several other\nblind source separation (BSS) methods, like AMUSE and SOBI, and some\ncriteria for performance evaluation of BSS algorithms, are given. The\npackage is described in Miettinen, Nordhausen and Taskinen (2017)\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/JADE_2.0-3.tar.gz" ], "version": "2.0-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/JADE_2.0-4.tar.gz" ], "version": "2.0-4" } ] }, "r-janitor": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-dplyr", "r-hms", "r-lifecycle", "r-lubridate", "r-magrittr", "r-purrr", "r-rlang", "r-snakecase", "r-stringi", "r-stringr", "r-tidyr", "r-tidyselect" ], "downloads": [ "https://cloud.r-project.org/src/contrib/janitor_2.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/janitor_2.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/janitor_1.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/janitor_1.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/janitor_0.3.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=janitor" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-janitor", "patches": [], "summary": "Simple Tools for Examining and Cleaning Dirty Data. The main janitor\nfunctions can: perfectly format data.frame column names; provide quick\none- and two-variable tabulations (i.e., frequency tables and\ncrosstabs); and isolate duplicate records. Other janitor functions\nnicely format the tabulation results. These tabulate-and-report\nfunctions approximate popular features of SPSS and Microsoft Excel. This\npackage follows the principles of the \"tidyverse\" and works well with\nthe pipe function %>%. janitor was built with beginning-to-intermediate\nR users in mind and is optimized for user-friendliness. Advanced R users\ncan already do everything covered here, but with janitor they can do it\nfaster and save their thinking for the fun stuff.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/janitor_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/janitor_1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/janitor_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/janitor_2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/janitor_2.2.0.tar.gz" ], "version": "2.2.0" } ] }, "r-jaspar2018": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://git.bioconductor.org/packages/JASPAR2018" ], "homepages": [ "https://bioconductor.org/packages/JASPAR2018" ], "licenses": [], "maintainers": [], "name": "r-jaspar2018", "patches": [], "summary": "Data package for JASPAR 2018. Data package for JASPAR 2018. To search\nthis databases, please use the package TFBSTools (>= 1.15.6).\n", "version": [ { "repositories": [ { "commit": "4c84092b3737bb1c57ab56f4321f2f5e4b0efeaa", "type": "git", "url": "https://git.bioconductor.org/packages/JASPAR2018" } ], "version": "1.0.0" }, { "repositories": [ { "commit": "cf8598d3c9054d85c43655cf82be17f74d800fa5", "type": "git", "url": "https://git.bioconductor.org/packages/JASPAR2018" } ], "version": "1.1.0" } ] }, "r-jomo": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-lme4", "r-mass", "r-ordinal", "r-survival", "r-tibble" ], "downloads": [ "https://cloud.r-project.org/src/contrib/jomo_2.7-6.tar.gz", "https://cloud.r-project.org/src/contrib/jomo_2.7-4.tar.gz", "https://cloud.r-project.org/src/contrib/jomo_2.7-3.tar.gz", "https://cloud.r-project.org/src/contrib/jomo_2.7-2.tar.gz", "https://cloud.r-project.org/src/contrib/jomo_2.6-9.tar.gz", "https://cloud.r-project.org/src/contrib/jomo_2.6-7.tar.gz", "https://cloud.r-project.org/src/contrib/jomo_2.6-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=jomo" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-jomo", "patches": [], "summary": "Multilevel Joint Modelling Multiple Imputation. Similarly to Schafer's\npackage 'pan', 'jomo' is a package for multilevel joint modelling\nmultiple imputation (Carpenter and Kenward, 2013)\n. Novel aspects of 'jomo' are the possibility\nof handling binary and categorical data through latent normal variables,\nthe option to use cluster-specific covariance matrices and to impute\ncompatibly with the substantive model.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/jomo_2.6-2.tar.gz" ], "version": "2.6-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jomo_2.6-7.tar.gz" ], "version": "2.6-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jomo_2.6-9.tar.gz" ], "version": "2.6-9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jomo_2.7-2.tar.gz" ], "version": "2.7-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jomo_2.7-3.tar.gz" ], "version": "2.7-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jomo_2.7-4.tar.gz" ], "version": "2.7-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jomo_2.7-6.tar.gz" ], "version": "2.7-6" } ] }, "r-jpeg": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "jpeg", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/jpeg_0.1-10.tar.gz", "https://cloud.r-project.org/src/contrib/jpeg_0.1-9.tar.gz", "https://cloud.r-project.org/src/contrib/jpeg_0.1-8.1.tar.gz", "https://cloud.r-project.org/src/contrib/jpeg_0.1-8.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=jpeg" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-jpeg", "patches": [], "summary": "Read and write JPEG images. This package provides an easy and simple way\nto read, write and display bitmap images stored in the JPEG format. It\ncan read and write both files and in-memory raw vectors.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/jpeg_0.1-10.tar.gz" ], "version": "0.1-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jpeg_0.1-8.tar.gz" ], "version": "0.1-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jpeg_0.1-8.1.tar.gz" ], "version": "0.1-8.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jpeg_0.1-9.tar.gz" ], "version": "0.1-9" } ] }, "r-jquerylib": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-htmltools" ], "downloads": [ "https://cloud.r-project.org/src/contrib/jquerylib_0.1.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=jquerylib" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-jquerylib", "patches": [], "summary": "Obtain 'jQuery' as an HTML Dependency Object. Obtain any major version\nof 'jQuery' () and use it in any webpage\ngenerated by 'htmltools' (e.g. 'shiny', 'htmlwidgets', and 'rmarkdown').\nMost R users don't need to use this package directly, but other R\npackages (e.g. 'shiny', 'rmarkdown', etc.) depend on this package to\navoid bundling redundant copies of 'jQuery'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/jquerylib_0.1.4.tar.gz" ], "version": "0.1.4" } ] }, "r-jsonify": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-rapidjsonr", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/jsonify_1.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/jsonify_1.2.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=jsonify" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-jsonify", "patches": [], "summary": "Convert Between 'R' Objects and Javascript Object Notation (JSON).\nConversions between 'R' objects and Javascript Object Notation (JSON)\nusing the 'rapidjsonr' library\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/jsonify_1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jsonify_1.2.2.tar.gz" ], "version": "1.2.2" } ] }, "r-jsonlite": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/jsonlite_1.8.8.tar.gz", "https://cloud.r-project.org/src/contrib/jsonlite_1.8.7.tar.gz", "https://cloud.r-project.org/src/contrib/jsonlite_1.8.5.tar.gz", "https://cloud.r-project.org/src/contrib/jsonlite_1.8.4.tar.gz", "https://cloud.r-project.org/src/contrib/jsonlite_1.8.3.tar.gz", "https://cloud.r-project.org/src/contrib/jsonlite_1.8.2.tar.gz", "https://cloud.r-project.org/src/contrib/jsonlite_1.8.0.tar.gz", "https://cloud.r-project.org/src/contrib/jsonlite_1.7.3.tar.gz", "https://cloud.r-project.org/src/contrib/jsonlite_1.7.2.tar.gz", "https://cloud.r-project.org/src/contrib/jsonlite_1.6.1.tar.gz", "https://cloud.r-project.org/src/contrib/jsonlite_1.6.tar.gz", "https://cloud.r-project.org/src/contrib/jsonlite_1.5.tar.gz", "https://cloud.r-project.org/src/contrib/jsonlite_1.2.tar.gz", "https://cloud.r-project.org/src/contrib/jsonlite_1.0.tar.gz", "https://cloud.r-project.org/src/contrib/jsonlite_0.9.21.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=jsonlite" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-jsonlite", "patches": [], "summary": "A Simple and Robust JSON Parser and Generator for R. A fast JSON parser\nand generator optimized for statistical data and the web. Started out as\na fork of 'RJSONIO', but has been completely rewritten in recent\nversions. The package offers flexible, robust, high performance tools\nfor working with JSON in R and is particularly powerful for building\npipelines and interacting with a web API. The implementation is based on\nthe mapping described in the vignette (Ooms, 2014). In addition to\nconverting JSON data from/to R objects, 'jsonlite' contains functions to\nstream, validate, and prettify JSON data. The unit tests included with\nthe package verify that all edge cases are encoded and decoded\nconsistently for use with dynamic data in systems and applications.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/jsonlite_0.9.21.tar.gz" ], "version": "0.9.21" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jsonlite_1.0.tar.gz" ], "version": "1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jsonlite_1.2.tar.gz" ], "version": "1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jsonlite_1.5.tar.gz" ], "version": "1.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jsonlite_1.6.tar.gz" ], "version": "1.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jsonlite_1.6.1.tar.gz" ], "version": "1.6.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jsonlite_1.7.2.tar.gz" ], "version": "1.7.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jsonlite_1.7.3.tar.gz" ], "version": "1.7.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jsonlite_1.8.0.tar.gz" ], "version": "1.8.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jsonlite_1.8.2.tar.gz" ], "version": "1.8.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jsonlite_1.8.3.tar.gz" ], "version": "1.8.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jsonlite_1.8.4.tar.gz" ], "version": "1.8.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jsonlite_1.8.5.tar.gz" ], "version": "1.8.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jsonlite_1.8.7.tar.gz" ], "version": "1.8.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/jsonlite_1.8.8.tar.gz" ], "version": "1.8.8" } ] }, "r-kableextra": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-digest", "r-glue", "r-htmltools", "r-knitr", "r-magrittr", "r-rmarkdown", "r-rstudioapi", "r-rvest", "r-scales", "r-stringr", "r-svglite", "r-viridislite", "r-webshot", "r-xml2" ], "downloads": [ "https://cloud.r-project.org/src/contrib/kableExtra_1.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/kableExtra_1.3.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=kableExtra" ], "licenses": [], "maintainers": [], "name": "r-kableextra", "patches": [], "summary": "Construct Complex Table with 'kable' and Pipe Syntax. Build complex HTML\nor 'LaTeX' tables using 'kable()' from 'knitr' and the piping syntax\nfrom 'magrittr'. Function 'kable()' is a light weight table generator\ncoming from 'knitr'. This package simplifies the way to manipulate the\nHTML or 'LaTeX' codes generated by 'kable()' and allows users to\nconstruct complex tables and customize styles using a readable syntax.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/kableExtra_1.3.4.tar.gz" ], "version": "1.3.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/kableExtra_1.4.0.tar.gz" ], "version": "1.4.0" } ] }, "r-kegggraph": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-graph", "r-rcurl", "r-rgraphviz", "r-xml" ], "downloads": [ "https://git.bioconductor.org/packages/KEGGgraph" ], "homepages": [ "https://bioconductor.org/packages/KEGGgraph" ], "licenses": [], "maintainers": [], "name": "r-kegggraph", "patches": [], "summary": "KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor.\nKEGGGraph is an interface between KEGG pathway and graph object as well\nas a collection of tools to analyze, dissect and visualize these graphs.\nIt parses the regularly updated KGML (KEGG XML) files into graph models\nmaintaining all essential pathway attributes. The package offers\nfunctionalities including parsing, graph operation, visualization and\netc.\n", "version": [ { "repositories": [ { "commit": "72f102e2611e3966362cfaa43646a6e66dd2ba27", "type": "git", "url": "https://git.bioconductor.org/packages/KEGGgraph" } ], "version": "1.38.0" }, { "repositories": [ { "commit": "dd31665beb36d5aad8ed09ed56c603633b6b2292", "type": "git", "url": "https://git.bioconductor.org/packages/KEGGgraph" } ], "version": "1.38.1" }, { "repositories": [ { "commit": "6351a1637276f71697b01a994ebda0d3d1cf6d7a", "type": "git", "url": "https://git.bioconductor.org/packages/KEGGgraph" } ], "version": "1.40.0" }, { "repositories": [ { "commit": "7d907e22a3ad7b4829a7cbaba5a8f8dc8013a609", "type": "git", "url": "https://git.bioconductor.org/packages/KEGGgraph" } ], "version": "1.42.0" }, { "repositories": [ { "commit": "2c24e8ec53fe34c72ea65f34e3c09905ab2e5c62", "type": "git", "url": "https://git.bioconductor.org/packages/KEGGgraph" } ], "version": "1.44.0" }, { "repositories": [ { "commit": "3335e85cdba264c04e6e36378578cf6c83a30eb8", "type": "git", "url": "https://git.bioconductor.org/packages/KEGGgraph" } ], "version": "1.50.0" }, { "repositories": [ { "commit": "135ee3dad30ca208e21acd0a2d81120b74b64079", "type": "git", "url": "https://git.bioconductor.org/packages/KEGGgraph" } ], "version": "1.54.0" }, { "repositories": [ { "commit": "e95cbf9f8a095d59b78a053463191b89c00d5ded", "type": "git", "url": "https://git.bioconductor.org/packages/KEGGgraph" } ], "version": "1.56.0" }, { "repositories": [ { "commit": "7c3f148b57903b8df517f94824f07f38bbd3b591", "type": "git", "url": "https://git.bioconductor.org/packages/KEGGgraph" } ], "version": "1.58.0" }, { "repositories": [ { "commit": "9fc1e371309193e7ff47b0e9d9937cbeed830a1c", "type": "git", "url": "https://git.bioconductor.org/packages/KEGGgraph" } ], "version": "1.60.0" } ] }, "r-keggrest": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-biostrings", "r-httr", "r-png" ], "downloads": [ "https://git.bioconductor.org/packages/KEGGREST" ], "homepages": [ "https://bioconductor.org/packages/KEGGREST" ], "licenses": [], "maintainers": [], "name": "r-keggrest", "patches": [], "summary": "Client-side REST access to KEGG. A package that provides a client\ninterface to the KEGG REST server. Based on KEGGSOAP by J. Zhang, R.\nGentleman, and Marc Carlson, and KEGG (python package) by Aurelien\nMazurie.\n", "version": [ { "repositories": [ { "commit": "ed48de0def57a909894e237fa4731c4a052d8849", "type": "git", "url": "https://git.bioconductor.org/packages/KEGGREST" } ], "version": "1.16.1" }, { "repositories": [ { "commit": "580c126eabc3c52145967708f67a428ca46b23b2", "type": "git", "url": "https://git.bioconductor.org/packages/KEGGREST" } ], "version": "1.18.1" }, { "repositories": [ { "commit": "62b4519367841f3548536c117e7e2bfe3fa4bf72", "type": "git", "url": "https://git.bioconductor.org/packages/KEGGREST" } ], "version": "1.20.2" }, { "repositories": [ { "commit": "4374507376be811d29416d0cbbfd9115a50494d9", "type": "git", "url": "https://git.bioconductor.org/packages/KEGGREST" } ], "version": "1.22.0" }, { "repositories": [ { "commit": "bbc3ef476e02147aad8e1f33178136cc797c1b3f", "type": "git", "url": "https://git.bioconductor.org/packages/KEGGREST" } ], "version": "1.24.1" }, { "repositories": [ { "commit": "fd9970ea9df117d625257b8c6351cf85098cfbc1", "type": "git", "url": "https://git.bioconductor.org/packages/KEGGREST" } ], "version": "1.30.1" }, { "repositories": [ { "commit": "2056750dc202fa04a34b84c6c712e884c7cad2bd", "type": "git", "url": "https://git.bioconductor.org/packages/KEGGREST" } ], "version": "1.34.0" }, { "repositories": [ { "commit": "591818bbc9195bfd0657cf4f5c7c771ea7f86830", "type": "git", "url": "https://git.bioconductor.org/packages/KEGGREST" } ], "version": "1.36.0" }, { "repositories": [ { "commit": "1827cde76863aa80c83264a0dd95514654358df3", "type": "git", "url": "https://git.bioconductor.org/packages/KEGGREST" } ], "version": "1.36.3" }, { "repositories": [ { "commit": "4dfbff9f6662227bd49d64d18a342f469dd88ad3", "type": "git", "url": "https://git.bioconductor.org/packages/KEGGREST" } ], "version": "1.38.0" }, { "repositories": [ { "commit": "1bdb0b57d7e9b708da14d2847c2a17ca35500b21", "type": "git", "url": "https://git.bioconductor.org/packages/KEGGREST" } ], "version": "1.40.0" } ] }, "r-kernlab": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/kernlab_0.9-33.tar.gz", "https://cloud.r-project.org/src/contrib/kernlab_0.9-32.tar.gz", "https://cloud.r-project.org/src/contrib/kernlab_0.9-31.tar.gz", "https://cloud.r-project.org/src/contrib/kernlab_0.9-30.tar.gz", "https://cloud.r-project.org/src/contrib/kernlab_0.9-29.tar.gz", "https://cloud.r-project.org/src/contrib/kernlab_0.9-27.tar.gz", "https://cloud.r-project.org/src/contrib/kernlab_0.9-26.tar.gz", "https://cloud.r-project.org/src/contrib/kernlab_0.9-25.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=kernlab" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-kernlab", "patches": [], "summary": "Kernel-Based Machine Learning Lab. Kernel-based machine learning methods\nfor classification, regression, clustering, novelty detection, quantile\nregression and dimensionality reduction. Among other methods 'kernlab'\nincludes Support Vector Machines, Spectral Clustering, Kernel PCA,\nGaussian Processes and a QP solver.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/kernlab_0.9-25.tar.gz" ], "version": "0.9-25" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/kernlab_0.9-26.tar.gz" ], "version": "0.9-26" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/kernlab_0.9-27.tar.gz" ], "version": "0.9-27" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/kernlab_0.9-29.tar.gz" ], "version": "0.9-29" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/kernlab_0.9-30.tar.gz" ], "version": "0.9-30" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/kernlab_0.9-31.tar.gz" ], "version": "0.9-31" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/kernlab_0.9-32.tar.gz" ], "version": "0.9-32" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/kernlab_0.9-33.tar.gz" ], "version": "0.9-33" } ] }, "r-kernsmooth": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/KernSmooth_2.23-24.tar.gz", "https://cloud.r-project.org/src/contrib/KernSmooth_2.23-20.tar.gz", "https://cloud.r-project.org/src/contrib/KernSmooth_2.23-18.tar.gz", "https://cloud.r-project.org/src/contrib/KernSmooth_2.23-15.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=KernSmooth" ], "licenses": [], "maintainers": [], "name": "r-kernsmooth", "patches": [], "summary": "Functions for Kernel Smoothing Supporting Wand & Jones (1995). Functions\nfor kernel smoothing (and density estimation) corresponding to the book:\nWand, M.P. and Jones, M.C. (1995) \"Kernel Smoothing\".\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/KernSmooth_2.23-15.tar.gz" ], "version": "2.23-15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/KernSmooth_2.23-18.tar.gz" ], "version": "2.23-18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/KernSmooth_2.23-20.tar.gz" ], "version": "2.23-20" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/KernSmooth_2.23-24.tar.gz" ], "version": "2.23-24" } ] }, "r-kknn": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-igraph", "r-matrix" ], "downloads": [ "https://cloud.r-project.org/src/contrib/kknn_1.3.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=kknn" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-kknn", "patches": [], "summary": "Weighted k-Nearest Neighbors. Weighted k-Nearest Neighbors for\nClassification, Regression and Clustering.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/kknn_1.3.1.tar.gz" ], "version": "1.3.1" } ] }, "r-klar": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-combinat", "r-mass", "r-questionr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/klaR_1.7-3.tar.gz", "https://cloud.r-project.org/src/contrib/klaR_1.7-2.tar.gz", "https://cloud.r-project.org/src/contrib/klaR_1.7-1.tar.gz", "https://cloud.r-project.org/src/contrib/klaR_1.7-0.tar.gz", "https://cloud.r-project.org/src/contrib/klaR_0.6-15.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=klaR" ], "licenses": [], "maintainers": [], "name": "r-klar", "patches": [], "summary": "Classification and Visualization. Miscellaneous functions for\nclassification and visualization, e.g. regularized discriminant\nanalysis, sknn() kernel-density naive Bayes, an interface to 'svmlight'\nand stepclass() wrapper variable selection for supervised\nclassification, partimat() visualization of classification rules and\nshardsplot() of cluster results as well as kmodes() clustering for\ncategorical data, corclust() variable clustering, variable extraction\nfrom different variable clustering models and weight of evidence\npreprocessing.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/klaR_0.6-15.tar.gz" ], "version": "0.6-15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/klaR_1.7-0.tar.gz" ], "version": "1.7-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/klaR_1.7-1.tar.gz" ], "version": "1.7-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/klaR_1.7-2.tar.gz" ], "version": "1.7-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/klaR_1.7-3.tar.gz" ], "version": "1.7-3" } ] }, "r-knitr": { "alias": [], "categories": [], "dependencies": [ "gmake", "pandoc", "py-rst2pdf", "r", "r-digest", "r-evaluate", "r-formatr", "r-highr", "r-markdown", "r-stringr", "r-xfun", "r-yaml" ], "downloads": [ "https://cloud.r-project.org/src/contrib/knitr_1.48.tar.gz", "https://cloud.r-project.org/src/contrib/knitr_1.42.tar.gz", "https://cloud.r-project.org/src/contrib/knitr_1.40.tar.gz", "https://cloud.r-project.org/src/contrib/knitr_1.39.tar.gz", "https://cloud.r-project.org/src/contrib/knitr_1.37.tar.gz", "https://cloud.r-project.org/src/contrib/knitr_1.33.tar.gz", "https://cloud.r-project.org/src/contrib/knitr_1.30.tar.gz", "https://cloud.r-project.org/src/contrib/knitr_1.28.tar.gz", "https://cloud.r-project.org/src/contrib/knitr_1.24.tar.gz", "https://cloud.r-project.org/src/contrib/knitr_1.23.tar.gz", "https://cloud.r-project.org/src/contrib/knitr_1.17.tar.gz", "https://cloud.r-project.org/src/contrib/knitr_1.14.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=knitr" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-knitr", "patches": [], "summary": "A General-Purpose Package for Dynamic Report Generation in R. Provides a\ngeneral-purpose tool for dynamic report generation in R using Literate\nProgramming techniques.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/knitr_1.14.tar.gz" ], "version": "1.14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/knitr_1.17.tar.gz" ], "version": "1.17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/knitr_1.23.tar.gz" ], "version": "1.23" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/knitr_1.24.tar.gz" ], "version": "1.24" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/knitr_1.28.tar.gz" ], "version": "1.28" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/knitr_1.30.tar.gz" ], "version": "1.30" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/knitr_1.33.tar.gz" ], "version": "1.33" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/knitr_1.37.tar.gz" ], "version": "1.37" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/knitr_1.39.tar.gz" ], "version": "1.39" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/knitr_1.40.tar.gz" ], "version": "1.40" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/knitr_1.42.tar.gz" ], "version": "1.42" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/knitr_1.48.tar.gz" ], "version": "1.48" } ] }, "r-kpmt": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-matrixstats" ], "downloads": [ "https://cloud.r-project.org/src/contrib/kpmt_0.1.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=kpmt" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-kpmt", "patches": [], "summary": "Known Population Median Test. Functions that implement the known\npopulation median test.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/kpmt_0.1.0.tar.gz" ], "version": "0.1.0" } ] }, "r-ks": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-fnn", "r-kernlab", "r-kernsmooth", "r-matrix", "r-mclust", "r-mgcv", "r-multicool", "r-mvtnorm", "r-plot3d", "r-pracma" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ks_1.14.2.tar.gz", "https://cloud.r-project.org/src/contrib/ks_1.14.0.tar.gz", "https://cloud.r-project.org/src/contrib/ks_1.13.5.tar.gz", "https://cloud.r-project.org/src/contrib/ks_1.13.3.tar.gz", "https://cloud.r-project.org/src/contrib/ks_1.11.7.tar.gz", "https://cloud.r-project.org/src/contrib/ks_1.11.5.tar.gz", "https://cloud.r-project.org/src/contrib/ks_1.11.4.tar.gz", "https://cloud.r-project.org/src/contrib/ks_1.11.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ks" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-ks", "patches": [], "summary": "Kernel Smoothing. Kernel smoothers for univariate and multivariate data,\nincluding densities, density derivatives, cumulative distributions,\nclustering, classification, density ridges, significant modal regions,\nand two-sample hypothesis tests. Chacon & Duong (2018)\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ks_1.11.2.tar.gz" ], "version": "1.11.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ks_1.11.4.tar.gz" ], "version": "1.11.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ks_1.11.5.tar.gz" ], "version": "1.11.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ks_1.11.7.tar.gz" ], "version": "1.11.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ks_1.13.3.tar.gz" ], "version": "1.13.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ks_1.13.5.tar.gz" ], "version": "1.13.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ks_1.14.0.tar.gz" ], "version": "1.14.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ks_1.14.2.tar.gz" ], "version": "1.14.2" } ] }, "r-ksamples": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-suppdists" ], "downloads": [ "https://cloud.r-project.org/src/contrib/kSamples_1.2-10.tar.gz", "https://cloud.r-project.org/src/contrib/kSamples_1.2-9.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=kSamples" ], "licenses": [], "maintainers": [], "name": "r-ksamples", "patches": [], "summary": "K-Sample Rank Tests and their Combinations. Compares k samples using the\nAnderson-Darling test, Kruskal-Wallis type tests with different rank\nscore criteria, Steel's multiple comparison test, and the Jonckheere-\nTerpstra (JT) test. It computes asymptotic, simulated or (limited) exact\nP-values, all valid under randomization, with or without ties, or\nconditionally under random sampling from populations, given the observed\ntie pattern. Except for Steel's test and the JT test it also combines\nthese tests across several blocks of samples. Also analyzed are 2 x t\ncontingency tables and their blocked combinations using the Kruskal-\nWallis criterion. Steel's test is inverted to provide simultaneous\nconfidence bounds for shift parameters. A plotting function compares\ntail probabilities obtained under asymptotic approximation with those\nobtained via simulation or exact calculations.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/kSamples_1.2-10.tar.gz" ], "version": "1.2-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/kSamples_1.2-9.tar.gz" ], "version": "1.2-9" } ] }, "r-labeling": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/labeling_0.4.3.tar.gz", "https://cloud.r-project.org/src/contrib/labeling_0.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/labeling_0.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=labeling" ], "licenses": [ "MIT OR custom" ], "maintainers": [], "name": "r-labeling", "patches": [], "summary": "Axis Labeling. Provides a range of axis labeling algorithms.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/labeling_0.3.tar.gz" ], "version": "0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/labeling_0.4.2.tar.gz" ], "version": "0.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/labeling_0.4.3.tar.gz" ], "version": "0.4.3" } ] }, "r-labelled": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-dplyr", "r-haven", "r-lifecycle", "r-pillar", "r-rlang", "r-stringr", "r-tidyr", "r-tidyselect", "r-vctrs" ], "downloads": [ "https://cloud.r-project.org/src/contrib/labelled_2.13.0.tar.gz", "https://cloud.r-project.org/src/contrib/labelled_2.11.0.tar.gz", "https://cloud.r-project.org/src/contrib/labelled_2.10.0.tar.gz", "https://cloud.r-project.org/src/contrib/labelled_2.9.1.tar.gz", "https://cloud.r-project.org/src/contrib/labelled_2.9.0.tar.gz", "https://cloud.r-project.org/src/contrib/labelled_2.7.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=labelled" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-labelled", "patches": [], "summary": "Manipulating Labelled Data. Work with labelled data imported from 'SPSS'\nor 'Stata' with 'haven' or 'foreign'. This package provides useful\nfunctions to deal with \"haven_labelled\" and \"haven_labelled_spss\"\nclasses introduced by 'haven' package.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/labelled_2.10.0.tar.gz" ], "version": "2.10.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/labelled_2.11.0.tar.gz" ], "version": "2.11.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/labelled_2.13.0.tar.gz" ], "version": "2.13.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/labelled_2.7.0.tar.gz" ], "version": "2.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/labelled_2.9.0.tar.gz" ], "version": "2.9.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/labelled_2.9.1.tar.gz" ], "version": "2.9.1" } ] }, "r-lambda-r": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-formatr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/lambda.r_1.2.4.tar.gz", "https://cloud.r-project.org/src/contrib/lambda.r_1.2.3.tar.gz", "https://cloud.r-project.org/src/contrib/lambda.r_1.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=lambda.r" ], "licenses": [], "maintainers": [], "name": "r-lambda-r", "patches": [], "summary": "Modeling Data with Functional Programming. A language extension to\nefficiently write functional programs in R. Syntax extensions include\nmulti-part function definitions, pattern matching, guard statements,\nbuilt-in (optional) type safety.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/lambda.r_1.2.tar.gz" ], "version": "1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lambda.r_1.2.3.tar.gz" ], "version": "1.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lambda.r_1.2.4.tar.gz" ], "version": "1.2.4" } ] }, "r-laplacesdemon": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/LaplacesDemon_16.1.6.tar.gz", "https://cloud.r-project.org/src/contrib/LaplacesDemon_16.1.4.tar.gz", "https://cloud.r-project.org/src/contrib/LaplacesDemon_16.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/LaplacesDemon_16.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/LaplacesDemon_16.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=LaplacesDemon" ], "licenses": [], "maintainers": [], "name": "r-laplacesdemon", "patches": [], "summary": "Complete Environment for Bayesian Inference. Provides a complete\nenvironment for Bayesian inference using a variety of different samplers\n(see ?LaplacesDemon for an overview). The README describes the history\nof the package development process.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/LaplacesDemon_16.0.1.tar.gz" ], "version": "16.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/LaplacesDemon_16.1.0.tar.gz" ], "version": "16.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/LaplacesDemon_16.1.1.tar.gz" ], "version": "16.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/LaplacesDemon_16.1.4.tar.gz" ], "version": "16.1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/LaplacesDemon_16.1.6.tar.gz" ], "version": "16.1.6" } ] }, "r-lars": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/lars_1.3.tar.gz", "https://cloud.r-project.org/src/contrib/lars_1.2.tar.gz", "https://cloud.r-project.org/src/contrib/lars_1.1.tar.gz", "https://cloud.r-project.org/src/contrib/lars_0.9-8.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=lars" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-lars", "patches": [], "summary": "Least Angle Regression, Lasso and Forward Stagewise. Efficient\nprocedures for fitting an entire lasso sequence with the cost of a\nsingle least squares fit.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/lars_0.9-8.tar.gz" ], "version": "0.9-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lars_1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lars_1.2.tar.gz" ], "version": "1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lars_1.3.tar.gz" ], "version": "1.3" } ] }, "r-later": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-bh", "r-rcpp", "r-rlang" ], "downloads": [ "https://cloud.r-project.org/src/contrib/later_1.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/later_1.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/later_1.1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/later_0.8.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=later" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-later", "patches": [], "summary": "Utilities for Scheduling Functions to Execute Later with Event Loops.\nExecutes arbitrary R or C functions some time after the current time,\nafter the R execution stack has emptied.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/later_0.8.0.tar.gz" ], "version": "0.8.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/later_1.1.0.1.tar.gz" ], "version": "1.1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/later_1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/later_1.3.2.tar.gz" ], "version": "1.3.2" } ] }, "r-lattice": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/lattice_0.22-6.tar.gz", "https://cloud.r-project.org/src/contrib/lattice_0.21-8.tar.gz", "https://cloud.r-project.org/src/contrib/lattice_0.20-45.tar.gz", "https://cloud.r-project.org/src/contrib/lattice_0.20-44.tar.gz", "https://cloud.r-project.org/src/contrib/lattice_0.20-41.tar.gz", "https://cloud.r-project.org/src/contrib/lattice_0.20-38.tar.gz", "https://cloud.r-project.org/src/contrib/lattice_0.20-35.tar.gz", "https://cloud.r-project.org/src/contrib/lattice_0.20-34.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=lattice" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-lattice", "patches": [], "summary": "Trellis Graphics for R. A powerful and elegant high-level data\nvisualization system inspired by Trellis graphics, with an emphasis on\nmultivariate data. Lattice is sufficient for typical graphics needs, and\nis also flexible enough to handle most nonstandard requirements. See\n?Lattice for an introduction.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/lattice_0.20-34.tar.gz" ], "version": "0.20-34" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lattice_0.20-35.tar.gz" ], "version": "0.20-35" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lattice_0.20-38.tar.gz" ], "version": "0.20-38" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lattice_0.20-41.tar.gz" ], "version": "0.20-41" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lattice_0.20-44.tar.gz" ], "version": "0.20-44" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lattice_0.20-45.tar.gz" ], "version": "0.20-45" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lattice_0.21-8.tar.gz" ], "version": "0.21-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lattice_0.22-6.tar.gz" ], "version": "0.22-6" } ] }, "r-latticeextra": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-interp", "r-jpeg", "r-lattice", "r-mass", "r-png", "r-rcolorbrewer" ], "downloads": [ "https://cloud.r-project.org/src/contrib/latticeExtra_0.6-30.tar.gz", "https://cloud.r-project.org/src/contrib/latticeExtra_0.6-29.tar.gz", "https://cloud.r-project.org/src/contrib/latticeExtra_0.6-28.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=latticeExtra" ], "licenses": [], "maintainers": [], "name": "r-latticeextra", "patches": [], "summary": "Extra Graphical Utilities Based on Lattice. Building on the\ninfrastructure provided by the lattice package, this package provides\nseveral new high-level functions and methods, as well as additional\nutilities such as panel and axis annotation functions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/latticeExtra_0.6-28.tar.gz" ], "version": "0.6-28" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/latticeExtra_0.6-29.tar.gz" ], "version": "0.6-29" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/latticeExtra_0.6-30.tar.gz" ], "version": "0.6-30" } ] }, "r-lava": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-future-apply", "r-numderiv", "r-progressr", "r-squarem", "r-survival" ], "downloads": [ "https://cloud.r-project.org/src/contrib/lava_1.8.0.tar.gz", "https://cloud.r-project.org/src/contrib/lava_1.7.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/lava_1.7.0.tar.gz", "https://cloud.r-project.org/src/contrib/lava_1.6.10.tar.gz", "https://cloud.r-project.org/src/contrib/lava_1.6.8.1.tar.gz", "https://cloud.r-project.org/src/contrib/lava_1.6.6.tar.gz", "https://cloud.r-project.org/src/contrib/lava_1.6.4.tar.gz", "https://cloud.r-project.org/src/contrib/lava_1.4.7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=lava" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-lava", "patches": [], "summary": "Latent Variable Models. A general implementation of Structural Equation\nModels with latent variables (MLE, 2SLS, and composite likelihood\nestimators) with both continuous, censored, and ordinal outcomes (Holst\nand Budtz-Joergensen (2013) ). Mixture\nlatent variable models and non-linear latent variable models (Holst and\nBudtz-Joergensen (2019) ). The package\nalso provides methods for graph exploration (d-separation, back-door\ncriterion), simulation of general non-linear latent variable models, and\nestimation of influence functions for a broad range of statistical\nmodels.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/lava_1.4.7.tar.gz" ], "version": "1.4.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lava_1.6.10.tar.gz" ], "version": "1.6.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lava_1.6.4.tar.gz" ], "version": "1.6.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lava_1.6.6.tar.gz" ], "version": "1.6.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lava_1.6.8.1.tar.gz" ], "version": "1.6.8.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lava_1.7.0.tar.gz" ], "version": "1.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lava_1.7.2.1.tar.gz" ], "version": "1.7.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lava_1.8.0.tar.gz" ], "version": "1.8.0" } ] }, "r-lavaan": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-mass", "r-mnormt", "r-numderiv", "r-pbivnorm", "r-quadprog" ], "downloads": [ "https://cloud.r-project.org/src/contrib/lavaan_0.6-18.tar.gz", "https://cloud.r-project.org/src/contrib/lavaan_0.6-15.tar.gz", "https://cloud.r-project.org/src/contrib/lavaan_0.6-12.tar.gz", "https://cloud.r-project.org/src/contrib/lavaan_0.6-11.tar.gz", "https://cloud.r-project.org/src/contrib/lavaan_0.6-10.tar.gz", "https://cloud.r-project.org/src/contrib/lavaan_0.6-9.tar.gz", "https://cloud.r-project.org/src/contrib/lavaan_0.6-8.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=lavaan" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-lavaan", "patches": [], "summary": "Latent Variable Analysis. Fit a variety of latent variable models,\nincluding confirmatory factor analysis, structural equation modeling and\nlatent growth curve models.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/lavaan_0.6-10.tar.gz" ], "version": "0.6-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lavaan_0.6-11.tar.gz" ], "version": "0.6-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lavaan_0.6-12.tar.gz" ], "version": "0.6-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lavaan_0.6-15.tar.gz" ], "version": "0.6-15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lavaan_0.6-18.tar.gz" ], "version": "0.6-18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lavaan_0.6-8.tar.gz" ], "version": "0.6-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lavaan_0.6-9.tar.gz" ], "version": "0.6-9" } ] }, "r-lazyeval": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/lazyeval_0.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/lazyeval_0.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/lazyeval_0.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=lazyeval" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-lazyeval", "patches": [], "summary": "Lazy (Non-Standard) Evaluation. An alternative approach to non-standard\nevaluation using formulas. Provides a full implementation of LISP style\n'quasiquotation', making it easier to generate code with other code.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/lazyeval_0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lazyeval_0.2.1.tar.gz" ], "version": "0.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lazyeval_0.2.2.tar.gz" ], "version": "0.2.2" } ] }, "r-ldheatmap": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-genetics", "r-rcpp", "r-snpstats" ], "downloads": [ "https://cloud.r-project.org/src/contrib/LDheatmap_1.0-6.tar.gz", "https://cloud.r-project.org/src/contrib/LDheatmap_1.0-4.tar.gz", "https://cloud.r-project.org/src/contrib/LDheatmap_0.99-7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=LDheatmap" ], "licenses": [], "maintainers": [], "name": "r-ldheatmap", "patches": [], "summary": "Graphical Display of Pairwise Linkage Disequilibria Between SNPs.\nProduces a graphical display, as a heat map, of measures of pairwise\nlinkage disequilibria between single nucleotide polymorphisms (SNPs).\nUsers may optionally include the physical locations or genetic map\ndistances of each SNP on the plot. The methods are described in Shin et\nal. (2006) . Users should note that the\nimported package 'snpStats' and the suggested packages 'rtracklayer',\n'GenomicRanges', 'GenomInfoDb' and 'IRanges' are all BioConductor\npackages .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/LDheatmap_0.99-7.tar.gz" ], "version": "0.99-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/LDheatmap_1.0-4.tar.gz" ], "version": "1.0-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/LDheatmap_1.0-6.tar.gz" ], "version": "1.0-6" } ] }, "r-leafem": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-base64enc", "r-geojsonsf", "r-htmltools", "r-htmlwidgets", "r-leaflet", "r-png", "r-raster", "r-sf" ], "downloads": [ "https://cloud.r-project.org/src/contrib/leafem_0.2.3.tar.gz", "https://cloud.r-project.org/src/contrib/leafem_0.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/leafem_0.1.6.tar.gz", "https://cloud.r-project.org/src/contrib/leafem_0.1.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=leafem" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-leafem", "patches": [], "summary": "'leaflet' Extensions for 'mapview'. Provides extensions for packages\n'leaflet' & 'mapdeck', many of which are used by package 'mapview'.\nFocus is on functionality readily available in Geographic Information\nSystems such as 'Quantum GIS'. Includes functions to display coordinates\nof mouse pointer position, query image values via mouse pointer and\nzoom-to-layer buttons. Additionally, provides a feature type agnostic\nfunction to add points, lines, polygons to a map.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/leafem_0.1.3.tar.gz" ], "version": "0.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/leafem_0.1.6.tar.gz" ], "version": "0.1.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/leafem_0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/leafem_0.2.3.tar.gz" ], "version": "0.2.3" } ] }, "r-leaflet": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-base64enc", "r-crosstalk", "r-htmltools", "r-htmlwidgets", "r-jquerylib", "r-leaflet-providers", "r-magrittr", "r-markdown", "r-png", "r-raster", "r-rcolorbrewer", "r-scales", "r-sp", "r-viridis", "r-viridislite", "r-xfun" ], "downloads": [ "https://cloud.r-project.org/src/contrib/leaflet_2.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/leaflet_2.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/leaflet_2.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/leaflet_2.0.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/leaflet_2.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/leaflet_2.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/leaflet_1.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=leaflet" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-leaflet", "patches": [], "summary": "Create Interactive Web Maps with the JavaScript 'Leaflet' Library.\nCreate and customize interactive maps using the 'Leaflet' JavaScript\nlibrary and the 'htmlwidgets' package. These maps can be used directly\nfrom the R console, from 'RStudio', in Shiny apps and R Markdown\ndocuments.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/leaflet_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/leaflet_2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/leaflet_2.0.2.tar.gz" ], "version": "2.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/leaflet_2.0.4.1.tar.gz" ], "version": "2.0.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/leaflet_2.1.1.tar.gz" ], "version": "2.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/leaflet_2.1.2.tar.gz" ], "version": "2.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/leaflet_2.2.2.tar.gz" ], "version": "2.2.2" } ] }, "r-leaflet-providers": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-htmltools" ], "downloads": [ "https://cloud.r-project.org/src/contrib/leaflet.providers_2.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/leaflet.providers_1.9.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=leaflet.providers" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "r-leaflet-providers", "patches": [], "summary": "Leaflet Providers. Contains third-party map tile provider information\nfrom 'Leaflet.js', , to be used with the 'leaflet' R package. Additionally,\n'leaflet.providers' enables users to retrieve up-to-date provider\ninformation between package updates.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/leaflet.providers_1.9.0.tar.gz" ], "version": "1.9.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/leaflet.providers_2.0.0.tar.gz" ], "version": "2.0.0" } ] }, "r-leafpop": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-base64enc", "r-brew", "r-htmltools", "r-htmlwidgets", "r-sf", "r-svglite", "r-uuid" ], "downloads": [ "https://cloud.r-project.org/src/contrib/leafpop_0.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/leafpop_0.0.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=leafpop" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-leafpop", "patches": [], "summary": "Include Tables, Images and Graphs in Leaflet Pop-Ups. Creates 'HTML'\nstrings to embed tables, images or graphs in pop-ups of interactive maps\ncreated with packages like 'leaflet' or 'mapview'. Handles local images\nlocated on the file system or via remote URL. Handles graphs created\nwith 'lattice' or 'ggplot2' as well as interactive plots created with\n'htmlwidgets'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/leafpop_0.0.6.tar.gz" ], "version": "0.0.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/leafpop_0.1.0.tar.gz" ], "version": "0.1.0" } ] }, "r-leaps": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/leaps_3.2.tar.gz", "https://cloud.r-project.org/src/contrib/leaps_3.1.tar.gz", "https://cloud.r-project.org/src/contrib/leaps_3.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=leaps" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-leaps", "patches": [], "summary": "Regression Subset Selection. Regression subset selection, including\nexhaustive search.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/leaps_3.0.tar.gz" ], "version": "3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/leaps_3.1.tar.gz" ], "version": "3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/leaps_3.2.tar.gz" ], "version": "3.2" } ] }, "r-learnbayes": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/LearnBayes_2.15.1.tar.gz", "https://cloud.r-project.org/src/contrib/LearnBayes_2.15.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=LearnBayes" ], "licenses": [], "maintainers": [], "name": "r-learnbayes", "patches": [], "summary": "Functions for Learning Bayesian Inference. LearnBayes contains a\ncollection of functions helpful in learning the basic tenets of Bayesian\nstatistical inference. It contains functions for summarizing basic one\nand two parameter posterior distributions and predictive distributions.\nIt contains MCMC algorithms for summarizing posterior distributions\ndefined by the user. It also contains functions for regression models,\nhierarchical models, Bayesian tests, and illustrations of Gibbs\nsampling.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/LearnBayes_2.15.tar.gz" ], "version": "2.15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/LearnBayes_2.15.1.tar.gz" ], "version": "2.15.1" } ] }, "r-leiden": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-igraph", "r-matrix", "r-reticulate" ], "downloads": [ "https://cloud.r-project.org/src/contrib/leiden_0.4.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/leiden_0.4.3.tar.gz", "https://cloud.r-project.org/src/contrib/leiden_0.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/leiden_0.3.9.tar.gz", "https://cloud.r-project.org/src/contrib/leiden_0.3.6.tar.gz", "https://cloud.r-project.org/src/contrib/leiden_0.3.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=leiden" ], "licenses": [ "GPL-3.0-only OR custom" ], "maintainers": [], "name": "r-leiden", "patches": [], "summary": "R Implementation of Leiden Clustering Algorithm. Implements the 'Python\nleidenalg' module to be called in R. Enables clustering using the leiden\nalgorithm for partition a graph into communities. See the 'Python'\nrepository for more details: Traag\net al (2018) From Louvain to Leiden: guaranteeing well-connected\ncommunities. .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/leiden_0.3.1.tar.gz" ], "version": "0.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/leiden_0.3.6.tar.gz" ], "version": "0.3.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/leiden_0.3.9.tar.gz" ], "version": "0.3.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/leiden_0.4.2.tar.gz" ], "version": "0.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/leiden_0.4.3.tar.gz" ], "version": "0.4.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/leiden_0.4.3.1.tar.gz" ], "version": "0.4.3.1" } ] }, "r-lfe": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-formula", "r-matrix", "r-sandwich", "r-xtable" ], "downloads": [ "https://cloud.r-project.org/src/contrib/lfe_3.0-0.tar.gz", "https://cloud.r-project.org/src/contrib/lfe_2.9-0.tar.gz", "https://cloud.r-project.org/src/contrib/lfe_2.8-8.tar.gz", "https://cloud.r-project.org/src/contrib/lfe_2.8-7.1.tar.gz", "https://cloud.r-project.org/src/contrib/lfe_2.8-6.tar.gz", "https://cloud.r-project.org/src/contrib/lfe_2.8-5.tar.gz", "https://cloud.r-project.org/src/contrib/lfe_2.8-4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=lfe" ], "licenses": [ "Artistic-2.0" ], "maintainers": [], "name": "r-lfe", "patches": [], "summary": "Linear Group Fixed Effects. Transforms away factors with many levels\nprior to doing an OLS. Useful for estimating linear models with multiple\ngroup fixed effects, and for estimating linear models which uses factors\nwith many levels as pure control variables. See Gaure (2013)\n Includes support for instrumental\nvariables, conditional F statistics for weak instruments, robust and\nmulti-way clustered standard errors, as well as limited mobility bias\ncorrection (Gaure 2014 ). WARNING: This package is\nNOT under active development anymore, no further improvements are to be\nexpected, and the package is at risk of being removed from CRAN.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/lfe_2.8-4.tar.gz" ], "version": "2.8-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lfe_2.8-5.tar.gz" ], "version": "2.8-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lfe_2.8-6.tar.gz" ], "version": "2.8-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lfe_2.8-7.1.tar.gz" ], "version": "2.8-7.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lfe_2.8-8.tar.gz" ], "version": "2.8-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lfe_2.9-0.tar.gz" ], "version": "2.9-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lfe_3.0-0.tar.gz" ], "version": "3.0-0" } ] }, "r-lhs": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/lhs_1.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/lhs_1.1.6.tar.gz", "https://cloud.r-project.org/src/contrib/lhs_1.1.5.tar.gz", "https://cloud.r-project.org/src/contrib/lhs_1.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/lhs_1.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/lhs_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/lhs_1.0.tar.gz", "https://cloud.r-project.org/src/contrib/lhs_0.16.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=lhs" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-lhs", "patches": [], "summary": "Latin Hypercube Samples. Provides a number of methods for creating and\naugmenting Latin Hypercube Samples.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/lhs_0.16.tar.gz" ], "version": "0.16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lhs_1.0.tar.gz" ], "version": "1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lhs_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lhs_1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lhs_1.1.3.tar.gz" ], "version": "1.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lhs_1.1.5.tar.gz" ], "version": "1.1.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lhs_1.1.6.tar.gz" ], "version": "1.1.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lhs_1.2.0.tar.gz" ], "version": "1.2.0" } ] }, "r-libcoin": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-mvtnorm" ], "downloads": [ "https://cloud.r-project.org/src/contrib/libcoin_1.0-10.tar.gz", "https://cloud.r-project.org/src/contrib/libcoin_1.0-9.tar.gz", "https://cloud.r-project.org/src/contrib/libcoin_1.0-6.tar.gz", "https://cloud.r-project.org/src/contrib/libcoin_1.0-4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=libcoin" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-libcoin", "patches": [], "summary": "Linear Test Statistics for Permutation Inference. Basic infrastructure\nfor linear test statistics and permutation inference in the framework of\nStrasser and Weber (1999) . This package\nmust not be used by end-users. CRAN package 'coin' implements all user\ninterfaces and is ready to be used by anyone.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/libcoin_1.0-10.tar.gz" ], "version": "1.0-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/libcoin_1.0-4.tar.gz" ], "version": "1.0-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/libcoin_1.0-6.tar.gz" ], "version": "1.0-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/libcoin_1.0-9.tar.gz" ], "version": "1.0-9" } ] }, "r-libpressio": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "libpressio", "libpressio-tools", "pkgconfig", "r", "r-rcpp" ], "downloads": [ "https://github.com/robertu94/libpressio-r/archive/1.6.0.tar.gz", "https://github.com/robertu94/libpressio-r/archive/1.5.0.tar.gz", "https://github.com/robertu94/libpressio-r/archive/1.4.1.tar.gz", "https://github.com/robertu94/libpressio-r/archive/1.3.2.tar.gz", "https://github.com/robertu94/libpressio-r/archive/1.3.tar.gz", "https://github.com/robertu94/libpressio-r/archive/1.2.tar.gz", "https://github.com/robertu94/libpressio-r/archive/1.1.tar.gz", "https://github.com/robertu94/libpressio-r/archive/0.0.1.tar.gz", null ], "homepages": [ "https://github.com/robertu94/libpressio-r" ], "licenses": [], "maintainers": [ "robertu94" ], "name": "r-libpressio", "patches": [], "summary": "R package for libpressio\n", "version": [ { "downloads": [ "https://github.com/robertu94/libpressio-r/archive/0.0.1.tar.gz" ], "version": "0.0.1" }, { "downloads": [ "https://github.com/robertu94/libpressio-r/archive/1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ "https://github.com/robertu94/libpressio-r/archive/1.2.tar.gz" ], "version": "1.2" }, { "downloads": [ "https://github.com/robertu94/libpressio-r/archive/1.3.tar.gz" ], "version": "1.3" }, { "downloads": [ "https://github.com/robertu94/libpressio-r/archive/1.3.2.tar.gz" ], "version": "1.3.2" }, { "downloads": [ "https://github.com/robertu94/libpressio-r/archive/1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://github.com/robertu94/libpressio-r/archive/1.5.0.tar.gz" ], "version": "1.5.0" }, { "downloads": [ "https://github.com/robertu94/libpressio-r/archive/1.6.0.tar.gz" ], "version": "1.6.0" } ] }, "r-lidr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-bh", "r-classint", "r-future", "r-geometry", "r-glue", "r-gstat", "r-knitr", "r-lazyeval", "r-mapview", "r-progress", "r-raster", "r-rcpp", "r-rcpparmadillo", "r-rgl", "r-rjson", "r-rlas", "r-rmarkdown", "r-sf", "r-sp", "r-stars", "r-terra", "r-testthat" ], "downloads": [ "https://cran.r-project.org/src/contrib/lidR_4.1.2.tar.gz", null ], "homepages": [ "https://github.com/r-lidar/lidR" ], "licenses": [ "GPL-3.0" ], "maintainers": [ "sidpbury" ], "name": "r-lidr", "patches": [], "summary": "Airborne LiDAR data manipulation and visualisation for forestry\napplication\n", "version": [ { "downloads": [ "https://cran.r-project.org/src/contrib/lidR_4.1.2.tar.gz" ], "version": "4.1.2" } ] }, "r-lifecycle": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-glue", "r-rlang" ], "downloads": [ "https://cloud.r-project.org/src/contrib/lifecycle_1.0.4.tar.gz", "https://cloud.r-project.org/src/contrib/lifecycle_1.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/lifecycle_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/lifecycle_0.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=lifecycle" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-lifecycle", "patches": [], "summary": "Manage the Life Cycle of your Package Functions. Manage the life cycle\nof your exported functions with shared conventions, documentation\nbadges, and non-invasive deprecation warnings. The 'lifecycle' package\ndefines four development stages (experimental, maturing, stable, and\nquestioning) and three deprecation stages (soft-deprecated, deprecated,\nand defunct). It makes it easy to insert badges corresponding to these\nstages in your documentation. Usage of deprecated functions are\nsignalled with increasing levels of non-invasive verbosity.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/lifecycle_0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lifecycle_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lifecycle_1.0.3.tar.gz" ], "version": "1.0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lifecycle_1.0.4.tar.gz" ], "version": "1.0.4" } ] }, "r-limma": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-statmod" ], "downloads": [ "https://git.bioconductor.org/packages/limma" ], "homepages": [ "https://bioconductor.org/packages/limma" ], "licenses": [], "maintainers": [], "name": "r-limma", "patches": [], "summary": "Linear Models for Microarray Data. Data analysis, linear models and\ndifferential expression for microarray data.\n", "version": [ { "repositories": [ { "commit": "593edf28e21fe054d64137ae271b8a52ab05bc60", "type": "git", "url": "https://git.bioconductor.org/packages/limma" } ], "version": "3.32.10" }, { "repositories": [ { "commit": "6755278a929f942a49e2441fb002a3ed393e1139", "type": "git", "url": "https://git.bioconductor.org/packages/limma" } ], "version": "3.34.9" }, { "repositories": [ { "commit": "3148d1cb7eea9c6bdd60351d51abcfd665332d44", "type": "git", "url": "https://git.bioconductor.org/packages/limma" } ], "version": "3.36.5" }, { "repositories": [ { "commit": "77b292eb150cdedaa1db704bcfb01f0bb29e9849", "type": "git", "url": "https://git.bioconductor.org/packages/limma" } ], "version": "3.38.3" }, { "repositories": [ { "commit": "3ae0767ecf7a764030e7b7d0b1d0f292c0b24055", "type": "git", "url": "https://git.bioconductor.org/packages/limma" } ], "version": "3.40.6" }, { "repositories": [ { "commit": "ff03542231827f39ebde6464cdbba0110e24364e", "type": "git", "url": "https://git.bioconductor.org/packages/limma" } ], "version": "3.46.0" }, { "repositories": [ { "commit": "657b19bbc33c5c941af79aeb68967bf42ea40e23", "type": "git", "url": "https://git.bioconductor.org/packages/limma" } ], "version": "3.50.0" }, { "repositories": [ { "commit": "c81c539a217ac1cf46e850f8a20266cecfafed50", "type": "git", "url": "https://git.bioconductor.org/packages/limma" } ], "version": "3.52.1" }, { "repositories": [ { "commit": "3226c29ad8c18aa7e6722f4a2c95ff8ac900437e", "type": "git", "url": "https://git.bioconductor.org/packages/limma" } ], "version": "3.52.4" }, { "repositories": [ { "commit": "1d1fa843d4fe2f8c94fd843bb1e80b8384d8306e", "type": "git", "url": "https://git.bioconductor.org/packages/limma" } ], "version": "3.54.0" }, { "repositories": [ { "commit": "efe857829233edb11ae317ce5d1ad4ea3073cf7f", "type": "git", "url": "https://git.bioconductor.org/packages/limma" } ], "version": "3.56.0" }, { "repositories": [ { "commit": "0f42428e09766efb49ab672419cdbe745872b22e", "type": "git", "url": "https://git.bioconductor.org/packages/limma" } ], "version": "3.64.3" } ] }, "r-limsolve": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-lpsolve", "r-mass", "r-quadprog" ], "downloads": [ "https://cloud.r-project.org/src/contrib/limSolve_1.5.7.1.tar.gz", "https://cloud.r-project.org/src/contrib/limSolve_1.5.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=limSolve" ], "licenses": [], "maintainers": [], "name": "r-limsolve", "patches": [], "summary": "Solving Linear Inverse Models. Functions that (1) find the\nminimum/maximum of a linear or quadratic function: min or max (f(x)),\nwhere f(x) = ||Ax-b||^2 or f(x) = sum(a_i*x_i) subject to equality\nconstraints Ex=f and/or inequality constraints Gx>=h, (2) sample an\nunderdetermined- or overdetermined system Ex=f subject to Gx>=h, and if\napplicable Ax~=b, (3) solve a linear system Ax=B for the unknown x. It\nincludes banded and tridiagonal linear systems.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/limSolve_1.5.6.tar.gz" ], "version": "1.5.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/limSolve_1.5.7.1.tar.gz" ], "version": "1.5.7.1" } ] }, "r-linprog": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-lpsolve" ], "downloads": [ "https://cloud.r-project.org/src/contrib/linprog_0.9-4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=linprog" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-linprog", "patches": [], "summary": "Linear Programming / Optimization. Can be used to solve Linear\nProgramming / Linear Optimization problems by using the simplex\nalgorithm.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/linprog_0.9-4.tar.gz" ], "version": "0.9-4" } ] }, "r-list": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-arm", "r-coda", "r-corpcor", "r-gamlss-dist", "r-magic", "r-mass", "r-mvtnorm", "r-quadprog", "r-sandwich", "r-vgam" ], "downloads": [ "https://cloud.r-project.org/src/contrib/list_9.2.6.tar.gz", null ], "homepages": [ "https://cran.r-project.org/web/packages/list/index.html" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-list", "patches": [], "summary": "Allows researchers to conduct multivariate statistical analyses of\nsurvey data with list experiments.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/list_9.2.6.tar.gz" ], "version": "9.2.6" } ] }, "r-listenv": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/listenv_0.9.1.tar.gz", "https://cloud.r-project.org/src/contrib/listenv_0.9.0.tar.gz", "https://cloud.r-project.org/src/contrib/listenv_0.8.0.tar.gz", "https://cloud.r-project.org/src/contrib/listenv_0.7.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=listenv" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "r-listenv", "patches": [], "summary": "Environments Behaving (Almost) as Lists. List environments are\nenvironments that have list-like properties. For instance, the elements\nof a list environment are ordered and can be accessed and iterated over\nusing index subsetting.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/listenv_0.7.0.tar.gz" ], "version": "0.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/listenv_0.8.0.tar.gz" ], "version": "0.8.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/listenv_0.9.0.tar.gz" ], "version": "0.9.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/listenv_0.9.1.tar.gz" ], "version": "0.9.1" } ] }, "r-lme4": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-boot", "r-lattice", "r-mass", "r-matrix", "r-minqa", "r-nlme", "r-nloptr", "r-rcpp", "r-rcppeigen", "r-reformulas", "r-statmod" ], "downloads": [ "https://cloud.r-project.org/src/contrib/lme4_1.1-37.tar.gz", "https://cloud.r-project.org/src/contrib/lme4_1.1-35.5.tar.gz", "https://cloud.r-project.org/src/contrib/lme4_1.1-33.tar.gz", "https://cloud.r-project.org/src/contrib/lme4_1.1-31.tar.gz", "https://cloud.r-project.org/src/contrib/lme4_1.1-30.tar.gz", "https://cloud.r-project.org/src/contrib/lme4_1.1-29.tar.gz", "https://cloud.r-project.org/src/contrib/lme4_1.1-27.1.tar.gz", "https://cloud.r-project.org/src/contrib/lme4_1.1-27.tar.gz", "https://cloud.r-project.org/src/contrib/lme4_1.1-26.tar.gz", "https://cloud.r-project.org/src/contrib/lme4_1.1-21.tar.gz", "https://cloud.r-project.org/src/contrib/lme4_1.1-20.tar.gz", "https://cloud.r-project.org/src/contrib/lme4_1.1-12.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=lme4" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-lme4", "patches": [], "summary": "Linear Mixed-Effects Models using 'Eigen' and S4. Fit linear and\ngeneralized linear mixed-effects models. The models and their components\nare represented using S4 classes and methods. The core computational\nalgorithms are implemented using the 'Eigen' C++ library for numerical\nlinear algebra and 'RcppEigen' \"glue\".\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/lme4_1.1-12.tar.gz" ], "version": "1.1-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lme4_1.1-20.tar.gz" ], "version": "1.1-20" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lme4_1.1-21.tar.gz" ], "version": "1.1-21" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lme4_1.1-26.tar.gz" ], "version": "1.1-26" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lme4_1.1-27.tar.gz" ], "version": "1.1-27" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lme4_1.1-27.1.tar.gz" ], "version": "1.1-27.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lme4_1.1-29.tar.gz" ], "version": "1.1-29" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lme4_1.1-30.tar.gz" ], "version": "1.1-30" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lme4_1.1-31.tar.gz" ], "version": "1.1-31" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lme4_1.1-33.tar.gz" ], "version": "1.1-33" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lme4_1.1-35.5.tar.gz" ], "version": "1.1-35.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lme4_1.1-37.tar.gz" ], "version": "1.1-37" } ] }, "r-lmertest": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ggplot2", "r-lme4", "r-mass", "r-numderiv" ], "downloads": [ "https://cloud.r-project.org/src/contrib/lmerTest_3.1-3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=lmerTest" ], "licenses": [], "maintainers": [], "name": "r-lmertest", "patches": [], "summary": "Tests in Linear Mixed Effects Models. Provides p-values in type I, II or\nIII anova and summary tables for lmer model fits (cf. lme4) via\nSatterthwaite's degrees of freedom method. A Kenward-Roger method is\nalso available via the pbkrtest package. Model selection methods include\nstep, drop1 and anova-like tables for random effects (ranova). Methods\nfor Least-Square means (LS-means) and tests of linear contrasts of fixed\neffects are also available.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/lmerTest_3.1-3.tar.gz" ], "version": "3.1-3" } ] }, "r-lmtest": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-zoo" ], "downloads": [ "https://cloud.r-project.org/src/contrib/lmtest_0.9-40.tar.gz", "https://cloud.r-project.org/src/contrib/lmtest_0.9-39.tar.gz", "https://cloud.r-project.org/src/contrib/lmtest_0.9-38.tar.gz", "https://cloud.r-project.org/src/contrib/lmtest_0.9-37.tar.gz", "https://cloud.r-project.org/src/contrib/lmtest_0.9-36.tar.gz", "https://cloud.r-project.org/src/contrib/lmtest_0.9-34.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=lmtest" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-lmtest", "patches": [], "summary": "Testing Linear Regression Models. A collection of tests, data sets, and\nexamples for diagnostic checking in linear regression models.\nFurthermore, some generic tools for inference in parametric models are\nprovided.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/lmtest_0.9-34.tar.gz" ], "version": "0.9-34" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lmtest_0.9-36.tar.gz" ], "version": "0.9-36" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lmtest_0.9-37.tar.gz" ], "version": "0.9-37" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lmtest_0.9-38.tar.gz" ], "version": "0.9-38" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lmtest_0.9-39.tar.gz" ], "version": "0.9-39" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lmtest_0.9-40.tar.gz" ], "version": "0.9-40" } ] }, "r-lobstr": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-cpp11", "r-crayon", "r-prettyunits", "r-rcpp", "r-rlang" ], "downloads": [ "https://cloud.r-project.org/src/contrib/lobstr_1.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/lobstr_1.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/lobstr_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/lobstr_1.0.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=lobstr" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-lobstr", "patches": [], "summary": "Visualize R Data Structures with Trees. A set of tools for inspecting\nand understanding R data structures inspired by str(). Includes ast()\nfor visualizing abstract syntax trees, ref() for showing shared\nreferences, cst() for showing call stack trees, and obj_size() for\ncomputing object sizes.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/lobstr_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lobstr_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lobstr_1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lobstr_1.1.2.tar.gz" ], "version": "1.1.2" } ] }, "r-locfit": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-lattice" ], "downloads": [ "https://cloud.r-project.org/src/contrib/locfit_1.5-9.10.tar.gz", "https://cloud.r-project.org/src/contrib/locfit_1.5-9.7.tar.gz", "https://cloud.r-project.org/src/contrib/locfit_1.5-9.6.tar.gz", "https://cloud.r-project.org/src/contrib/locfit_1.5-9.5.tar.gz", "https://cloud.r-project.org/src/contrib/locfit_1.5-9.4.tar.gz", "https://cloud.r-project.org/src/contrib/locfit_1.5-9.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=locfit" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-locfit", "patches": [], "summary": "Local regression, likelihood and density estimation. Local regression,\nlikelihood and density estimation methods as described in the 1999 book\nby Loader.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/locfit_1.5-9.1.tar.gz" ], "version": "1.5-9.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/locfit_1.5-9.10.tar.gz" ], "version": "1.5-9.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/locfit_1.5-9.4.tar.gz" ], "version": "1.5-9.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/locfit_1.5-9.5.tar.gz" ], "version": "1.5-9.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/locfit_1.5-9.6.tar.gz" ], "version": "1.5-9.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/locfit_1.5-9.7.tar.gz" ], "version": "1.5-9.7" } ] }, "r-log4r": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/log4r_0.4.3.tar.gz", "https://cloud.r-project.org/src/contrib/log4r_0.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/log4r_0.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/log4r_0.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/log4r_0.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=log4r" ], "licenses": [ "Artistic-2.0" ], "maintainers": [], "name": "r-log4r", "patches": [], "summary": "A Fast and Lightweight Logging System for R, Based on 'log4j'. logr4\nprovides an object-oriented logging system that uses an API roughly\nequivalent to log4j and its related variants.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/log4r_0.2.tar.gz" ], "version": "0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/log4r_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/log4r_0.3.2.tar.gz" ], "version": "0.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/log4r_0.4.2.tar.gz" ], "version": "0.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/log4r_0.4.3.tar.gz" ], "version": "0.4.3" } ] }, "r-loo": { "alias": [], "categories": [], "dependencies": [ "gmake", "pandoc", "r", "r-checkmate", "r-matrixstats", "r-posterior" ], "downloads": [ "https://cloud.r-project.org/src/contrib/loo_2.8.0.tar.gz", "https://cloud.r-project.org/src/contrib/loo_2.6.0.tar.gz", "https://cloud.r-project.org/src/contrib/loo_2.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/loo_2.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/loo_2.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/loo_2.1.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=loo" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-loo", "patches": [], "summary": "Efficient Leave-One-Out Cross-Validation and WAIC for BayesianModels.\nEfficient approximate leave-one-out cross-validation (LOO) for Bayesian\nmodels fit using Markov chain Monte Carlo, as described in Vehtari,\nGelman, and Gabry (2017) . The\napproximation uses Pareto smoothed importance sampling (PSIS), a new\nprocedure for regularizing importance weights. As a byproduct of the\ncalculations, we also obtain approximate standard errors for estimated\npredictive errors and for the comparison of predictive errors between\nmodels. The package also provides methods for using stacking and other\nmodel weighting techniques to average Bayesian predictive distributions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/loo_2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/loo_2.3.1.tar.gz" ], "version": "2.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/loo_2.4.1.tar.gz" ], "version": "2.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/loo_2.5.1.tar.gz" ], "version": "2.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/loo_2.6.0.tar.gz" ], "version": "2.6.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/loo_2.8.0.tar.gz" ], "version": "2.8.0" } ] }, "r-lpsolve": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/lpSolve_5.6.20.tar.gz", "https://cloud.r-project.org/src/contrib/lpSolve_5.6.18.tar.gz", "https://cloud.r-project.org/src/contrib/lpSolve_5.6.17.tar.gz", "https://cloud.r-project.org/src/contrib/lpSolve_5.6.16.tar.gz", "https://cloud.r-project.org/src/contrib/lpSolve_5.6.15.tar.gz", "https://cloud.r-project.org/src/contrib/lpSolve_5.6.13.2.tar.gz", "https://cloud.r-project.org/src/contrib/lpSolve_5.6.13.1.tar.gz", "https://cloud.r-project.org/src/contrib/lpSolve_5.6.13.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=lpSolve" ], "licenses": [], "maintainers": [], "name": "r-lpsolve", "patches": [], "summary": "Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs.\nLp_solve is freely available (under LGPL 2) software for solving linear,\ninteger and mixed integer programs. In this implementation we supply a\n\"wrapper\" function in C and some R functions that solve general\nlinear/integer problems, assignment problems, and transportation\nproblems. This version calls lp_solve\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/lpSolve_5.6.13.tar.gz" ], "version": "5.6.13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lpSolve_5.6.13.1.tar.gz" ], "version": "5.6.13.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lpSolve_5.6.13.2.tar.gz" ], "version": "5.6.13.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lpSolve_5.6.15.tar.gz" ], "version": "5.6.15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lpSolve_5.6.16.tar.gz" ], "version": "5.6.16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lpSolve_5.6.17.tar.gz" ], "version": "5.6.17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lpSolve_5.6.18.tar.gz" ], "version": "5.6.18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lpSolve_5.6.20.tar.gz" ], "version": "5.6.20" } ] }, "r-lpsolveapi": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/lpSolveAPI_5.5.2.0-17.12.tar.gz", "https://cloud.r-project.org/src/contrib/lpSolveAPI_5.5.2.0-17.9.tar.gz", "https://cloud.r-project.org/src/contrib/lpSolveAPI_5.5.2.0-17.8.tar.gz", "https://cloud.r-project.org/src/contrib/lpSolveAPI_5.5.2.0-17.7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=lpSolveAPI" ], "licenses": [], "maintainers": [], "name": "r-lpsolveapi", "patches": [], "summary": "R Interface to 'lp_solve' Version 5.5.2.0. The lpSolveAPI package\nprovides an R interface to 'lp_solve', a Mixed Integer Linear\nProgramming (MILP) solver with support for pure linear, (mixed)\ninteger/binary, semi-continuous and special ordered sets (SOS) models.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/lpSolveAPI_5.5.2.0-17.12.tar.gz" ], "version": "5.5.2.0-17.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lpSolveAPI_5.5.2.0-17.7.tar.gz" ], "version": "5.5.2.0-17.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lpSolveAPI_5.5.2.0-17.8.tar.gz" ], "version": "5.5.2.0-17.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lpSolveAPI_5.5.2.0-17.9.tar.gz" ], "version": "5.5.2.0-17.9" } ] }, "r-lsei": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/lsei_1.3-0.tar.gz", "https://cloud.r-project.org/src/contrib/lsei_1.2-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=lsei" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-lsei", "patches": [], "summary": "Solving Least Squares or Quadratic Programming Problems under\nEquality/Inequality Constraints. It contains functions that solve least\nsquares linear regression problems under linear equality/inequality\nconstraints. Functions for solving quadratic programming problems are\nalso available, which transform such problems into least squares ones\nfirst. It is developed based on the 'Fortran' program of Lawson and\nHanson (1974, 1995), which is public domain and available at\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/lsei_1.2-0.tar.gz" ], "version": "1.2-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lsei_1.3-0.tar.gz" ], "version": "1.3-0" } ] }, "r-lubridate": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-cpp11", "r-generics", "r-rcpp", "r-stringr", "r-timechange" ], "downloads": [ "https://cloud.r-project.org/src/contrib/lubridate_1.9.3.tar.gz", "https://cloud.r-project.org/src/contrib/lubridate_1.9.2.tar.gz", "https://cloud.r-project.org/src/contrib/lubridate_1.9.0.tar.gz", "https://cloud.r-project.org/src/contrib/lubridate_1.8.0.tar.gz", "https://cloud.r-project.org/src/contrib/lubridate_1.7.9.2.tar.gz", "https://cloud.r-project.org/src/contrib/lubridate_1.7.4.tar.gz", "https://cloud.r-project.org/src/contrib/lubridate_1.7.3.tar.gz", "https://cloud.r-project.org/src/contrib/lubridate_1.7.1.tar.gz", "https://cloud.r-project.org/src/contrib/lubridate_1.5.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=lubridate" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-lubridate", "patches": [], "summary": "Make Dealing with Dates a Little Easier. Functions to work with date-\ntimes and timespans: fast and user friendly parsing of date-time data,\nextraction and updating of components of a date-time (years, months,\ndays, hours, minutes, and seconds), algebraic manipulation on date-time\nand timespan objects. The 'lubridate' package has a consistent and\nmemorable syntax that makes working with dates easy and fun.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/lubridate_1.5.6.tar.gz" ], "version": "1.5.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lubridate_1.7.1.tar.gz" ], "version": "1.7.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lubridate_1.7.3.tar.gz" ], "version": "1.7.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lubridate_1.7.4.tar.gz" ], "version": "1.7.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lubridate_1.7.9.2.tar.gz" ], "version": "1.7.9.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lubridate_1.8.0.tar.gz" ], "version": "1.8.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lubridate_1.9.0.tar.gz" ], "version": "1.9.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lubridate_1.9.2.tar.gz" ], "version": "1.9.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lubridate_1.9.3.tar.gz" ], "version": "1.9.3" } ] }, "r-lumi": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-affy", "r-annotate", "r-annotationdbi", "r-biobase", "r-dbi", "r-genomicfeatures", "r-genomicranges", "r-kernsmooth", "r-lattice", "r-mass", "r-methylumi", "r-mgcv", "r-nleqslv", "r-preprocesscore", "r-rsqlite" ], "downloads": [ "https://git.bioconductor.org/packages/lumi" ], "homepages": [ "https://bioconductor.org/packages/lumi" ], "licenses": [], "maintainers": [], "name": "r-lumi", "patches": [], "summary": "BeadArray Specific Methods for Illumina Methylation and Expression\nMicroarrays. The lumi package provides an integrated solution for the\nIllumina microarray data analysis. It includes functions of Illumina\nBeadStudio (GenomeStudio) data input, quality control, BeadArray-\nspecific variance stabilization, normalization and gene annotation at\nthe probe level. It also includes the functions of processing Illumina\nmethylation microarrays, especially Illumina Infinium methylation\nmicroarrays.\n", "version": [ { "repositories": [ { "commit": "321d480d44ce9a0c02ce5af1bddc1f549abdea59", "type": "git", "url": "https://git.bioconductor.org/packages/lumi" } ], "version": "2.38.0" }, { "repositories": [ { "commit": "a643b3ba46fee951b8566ddd8216af7e6c92f6f6", "type": "git", "url": "https://git.bioconductor.org/packages/lumi" } ], "version": "2.42.0" }, { "repositories": [ { "commit": "a68932c17a61c99e58ebbd8008d078bec6adb4e7", "type": "git", "url": "https://git.bioconductor.org/packages/lumi" } ], "version": "2.46.0" }, { "repositories": [ { "commit": "1f988ffe04d2c0707b2202d2074d02b679a3204b", "type": "git", "url": "https://git.bioconductor.org/packages/lumi" } ], "version": "2.48.0" }, { "repositories": [ { "commit": "8711b77a1b5b0a58770d25d3d079ad02208704f5", "type": "git", "url": "https://git.bioconductor.org/packages/lumi" } ], "version": "2.50.0" }, { "repositories": [ { "commit": "c6aa992a622dbaba4dae1b54c61835a37cce8e95", "type": "git", "url": "https://git.bioconductor.org/packages/lumi" } ], "version": "2.52.0" } ] }, "r-lwgeom": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "geos", "gmake", "proj", "r", "r-rcpp", "r-sf", "r-units", "sqlite" ], "downloads": [ "https://cloud.r-project.org/src/contrib/lwgeom_0.2-14.tar.gz", "https://cloud.r-project.org/src/contrib/lwgeom_0.2-11.tar.gz", "https://cloud.r-project.org/src/contrib/lwgeom_0.2-9.tar.gz", "https://cloud.r-project.org/src/contrib/lwgeom_0.2-8.tar.gz", "https://cloud.r-project.org/src/contrib/lwgeom_0.2-5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=lwgeom" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-lwgeom", "patches": [], "summary": "Bindings to Selected 'liblwgeom' Functions for Simple Features. Access\nto selected functions found in 'liblwgeom'\n, the light-\nweight geometry library used by 'PostGIS' .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/lwgeom_0.2-11.tar.gz" ], "version": "0.2-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lwgeom_0.2-14.tar.gz" ], "version": "0.2-14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lwgeom_0.2-5.tar.gz" ], "version": "0.2-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lwgeom_0.2-8.tar.gz" ], "version": "0.2-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/lwgeom_0.2-9.tar.gz" ], "version": "0.2-9" } ] }, "r-magic": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-abind" ], "downloads": [ "https://cloud.r-project.org/src/contrib/magic_1.6-1.tar.gz", "https://cloud.r-project.org/src/contrib/magic_1.6-0.tar.gz", "https://cloud.r-project.org/src/contrib/magic_1.5-9.tar.gz", "https://cloud.r-project.org/src/contrib/magic_1.5-8.tar.gz", "https://cloud.r-project.org/src/contrib/magic_1.5-6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=magic" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-magic", "patches": [], "summary": "Create and Investigate Magic Squares. A collection of efficient,\nvectorized algorithms for the creation and investigation of magic\nsquares and hypercubes, including a variety of functions for the\nmanipulation and analysis of arbitrarily dimensioned arrays. The package\nincludes methods for creating normal magic squares of any order greater\nthan 2. The ultimate intention is for the package to be a computerized\nembodiment all magic square knowledge, including direct numerical\nverification of properties of magic squares (such as recent results on\nthe determinant of odd-ordered semimagic squares). Some antimagic\nfunctionality is included. The package also serves as a rebuttal to the\noften-heard comment \"I thought R was just for statistics\".\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/magic_1.5-6.tar.gz" ], "version": "1.5-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/magic_1.5-8.tar.gz" ], "version": "1.5-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/magic_1.5-9.tar.gz" ], "version": "1.5-9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/magic_1.6-0.tar.gz" ], "version": "1.6-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/magic_1.6-1.tar.gz" ], "version": "1.6-1" } ] }, "r-magick": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "imagemagick", "r", "r-curl", "r-magrittr", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/magick_2.8.4.tar.gz", "https://cloud.r-project.org/src/contrib/magick_2.7.4.tar.gz", "https://cloud.r-project.org/src/contrib/magick_2.7.3.tar.gz", "https://cloud.r-project.org/src/contrib/magick_2.6.0.tar.gz", "https://cloud.r-project.org/src/contrib/magick_2.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=magick" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-magick", "patches": [], "summary": "Advanced Graphics and Image-Processing in R. Bindings to 'ImageMagick':\nthe most comprehensive open-source image processing library available.\nSupports many common formats (png, jpeg, tiff, pdf, etc) and\nmanipulations (rotate, scale, crop, trim, flip, blur, etc). All\noperations are vectorized via the Magick++ STL meaning they operate\neither on a single frame or a series of frames for working with layers,\ncollages, or animation. In RStudio images are automatically previewed\nwhen printed to the console, resulting in an interactive editing\nenvironment. The latest version of the package includes a native\ngraphics device for creating in-memory graphics or drawing onto images\nusing pixel coordinates.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/magick_2.1.tar.gz" ], "version": "2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/magick_2.6.0.tar.gz" ], "version": "2.6.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/magick_2.7.3.tar.gz" ], "version": "2.7.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/magick_2.7.4.tar.gz" ], "version": "2.7.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/magick_2.8.4.tar.gz" ], "version": "2.8.4" } ] }, "r-magrittr": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/magrittr_2.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/magrittr_2.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/magrittr_2.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/magrittr_1.5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=magrittr" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-magrittr", "patches": [], "summary": "A Forward-Pipe Operator for R. Provides a mechanism for chaining\ncommands with a new forward-pipe operator, %>%. This operator will\nforward a value, or the result of an expression, into the next function\ncall/expression. There is flexible support for the type of right-hand\nside expressions. For more information, see package vignette.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/magrittr_1.5.tar.gz" ], "version": "1.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/magrittr_2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/magrittr_2.0.2.tar.gz" ], "version": "2.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/magrittr_2.0.3.tar.gz" ], "version": "2.0.3" } ] }, "r-makecdfenv": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-affy", "r-affyio", "r-biobase", "r-zlibbioc" ], "downloads": [ "https://git.bioconductor.org/packages/makecdfenv" ], "homepages": [ "https://bioconductor.org/packages/makecdfenv" ], "licenses": [], "maintainers": [], "name": "r-makecdfenv", "patches": [], "summary": "CDF Environment Maker. This package has two functions. One reads a\nAffymetrix chip description file (CDF) and creates a hash table\nenvironment containing the location/probe set membership mapping. The\nother creates a package that automatically loads that environment.\n", "version": [ { "repositories": [ { "commit": "b88a3e93e3b7feeeca69eda7c1fc5a0826c81120", "type": "git", "url": "https://git.bioconductor.org/packages/makecdfenv" } ], "version": "1.52.0" }, { "repositories": [ { "commit": "3ff646ddc4b028e46b1e091ff9c2d17ce77cec26", "type": "git", "url": "https://git.bioconductor.org/packages/makecdfenv" } ], "version": "1.54.0" }, { "repositories": [ { "commit": "f6b48e9a9f18598653d05bc0bdffeae7fefbb327", "type": "git", "url": "https://git.bioconductor.org/packages/makecdfenv" } ], "version": "1.56.0" }, { "repositories": [ { "commit": "6f513e39c4920a6da10d22718fc3bf278fe5ffe2", "type": "git", "url": "https://git.bioconductor.org/packages/makecdfenv" } ], "version": "1.58.0" }, { "repositories": [ { "commit": "900ece3ecd7a0ade9f8a0374e5a03def4e079cb3", "type": "git", "url": "https://git.bioconductor.org/packages/makecdfenv" } ], "version": "1.60.0" }, { "repositories": [ { "commit": "02aa975d543089f5495cb3b4e8edbcf0ff05148a", "type": "git", "url": "https://git.bioconductor.org/packages/makecdfenv" } ], "version": "1.66.0" }, { "repositories": [ { "commit": "82ecd0fa8ac401e4ac8f1e9139556d2be4a3c4f3", "type": "git", "url": "https://git.bioconductor.org/packages/makecdfenv" } ], "version": "1.70.0" }, { "repositories": [ { "commit": "85c89688e6b6e8bff46b92cbeba49e38c510492e", "type": "git", "url": "https://git.bioconductor.org/packages/makecdfenv" } ], "version": "1.72.0" }, { "repositories": [ { "commit": "412affc333ba51cad0ff3c7919e2eadaaf426359", "type": "git", "url": "https://git.bioconductor.org/packages/makecdfenv" } ], "version": "1.74.0" }, { "repositories": [ { "commit": "8196d4886db1d8e51821bfe9f727a30666d53801", "type": "git", "url": "https://git.bioconductor.org/packages/makecdfenv" } ], "version": "1.76.0" } ] }, "r-maldiquant": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/MALDIquant_1.22.3.tar.gz", "https://cloud.r-project.org/src/contrib/MALDIquant_1.22.1.tar.gz", "https://cloud.r-project.org/src/contrib/MALDIquant_1.21.tar.gz", "https://cloud.r-project.org/src/contrib/MALDIquant_1.19.3.tar.gz", "https://cloud.r-project.org/src/contrib/MALDIquant_1.19.2.tar.gz", "https://cloud.r-project.org/src/contrib/MALDIquant_1.16.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=MALDIquant" ], "licenses": [], "maintainers": [], "name": "r-maldiquant", "patches": [], "summary": "Quantitative Analysis of Mass Spectrometry Data. A complete analysis\npipeline for matrix-assisted laser desorption/ionization-time-of-flight\n(MALDI-TOF) and other two-dimensional mass spectrometry data. In\naddition to commonly used plotting and processing methods it includes\ndistinctive features, namely baseline subtraction methods such as\nmorphological filters (TopHat) or the statistics-sensitive non-linear\niterative peak-clipping algorithm (SNIP), peak alignment using warping\nfunctions, handling of replicated measurements as well as allowing\nspectra with different resolutions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/MALDIquant_1.16.4.tar.gz" ], "version": "1.16.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MALDIquant_1.19.2.tar.gz" ], "version": "1.19.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MALDIquant_1.19.3.tar.gz" ], "version": "1.19.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MALDIquant_1.21.tar.gz" ], "version": "1.21" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MALDIquant_1.22.1.tar.gz" ], "version": "1.22.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MALDIquant_1.22.3.tar.gz" ], "version": "1.22.3" } ] }, "r-manipulatewidget": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-base64enc", "r-codetools", "r-htmltools", "r-htmlwidgets", "r-knitr", "r-miniui", "r-shiny", "r-shinyjs", "r-webshot" ], "downloads": [ "https://cloud.r-project.org/src/contrib/manipulateWidget_0.11.1.tar.gz", "https://cloud.r-project.org/src/contrib/manipulateWidget_0.10.1.tar.gz", "https://cloud.r-project.org/src/contrib/manipulateWidget_0.10.0.tar.gz", "https://cloud.r-project.org/src/contrib/manipulateWidget_0.9.0.tar.gz", "https://cloud.r-project.org/src/contrib/manipulateWidget_0.8.0.tar.gz", "https://cloud.r-project.org/src/contrib/manipulateWidget_0.7.0.tar.gz", "https://cloud.r-project.org/src/contrib/manipulateWidget_0.6.0.tar.gz", "https://cloud.r-project.org/src/contrib/manipulateWidget_0.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/manipulateWidget_0.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/manipulateWidget_0.4.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=manipulateWidget" ], "licenses": [], "maintainers": [], "name": "r-manipulatewidget", "patches": [], "summary": "Add Even More Interactivity to Interactive Charts. Like package\n'manipulate' does for static graphics, this package helps to easily add\ncontrols like sliders, pickers, checkboxes, etc. that can be used to\nmodify the input data or the parameters of an interactive chart created\nwith package 'htmlwidgets'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/manipulateWidget_0.10.0.tar.gz" ], "version": "0.10.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/manipulateWidget_0.10.1.tar.gz" ], "version": "0.10.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/manipulateWidget_0.11.1.tar.gz" ], "version": "0.11.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/manipulateWidget_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/manipulateWidget_0.5.0.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/manipulateWidget_0.5.1.tar.gz" ], "version": "0.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/manipulateWidget_0.6.0.tar.gz" ], "version": "0.6.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/manipulateWidget_0.7.0.tar.gz" ], "version": "0.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/manipulateWidget_0.8.0.tar.gz" ], "version": "0.8.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/manipulateWidget_0.9.0.tar.gz" ], "version": "0.9.0" } ] }, "r-mapplots": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mapplots_1.5.2.tar.gz", "https://cloud.r-project.org/src/contrib/mapplots_1.5.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mapplots" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-mapplots", "patches": [], "summary": "Data Visualisation on Maps. Create simple maps; add sub-plots like pie\nplots to a map or any other plot; format, plot and export gridded data.\nThe package was developed for displaying fisheries data but most\nfunctions can be used for more generic data visualisation.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/mapplots_1.5.1.tar.gz" ], "version": "1.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mapplots_1.5.2.tar.gz" ], "version": "1.5.2" } ] }, "r-mapproj": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-maps" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mapproj_1.2.11.tar.gz", "https://cloud.r-project.org/src/contrib/mapproj_1.2.9.tar.gz", "https://cloud.r-project.org/src/contrib/mapproj_1.2.8.tar.gz", "https://cloud.r-project.org/src/contrib/mapproj_1.2.7.tar.gz", "https://cloud.r-project.org/src/contrib/mapproj_1.2.6.tar.gz", "https://cloud.r-project.org/src/contrib/mapproj_1.2-5.tar.gz", "https://cloud.r-project.org/src/contrib/mapproj_1.2-4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mapproj" ], "licenses": [ "LPL-1.02" ], "maintainers": [], "name": "r-mapproj", "patches": [], "summary": "Map Projections. Converts latitude/longitude into projected coordinates.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/mapproj_1.2-4.tar.gz" ], "version": "1.2-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mapproj_1.2-5.tar.gz" ], "version": "1.2-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mapproj_1.2.11.tar.gz" ], "version": "1.2.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mapproj_1.2.6.tar.gz" ], "version": "1.2.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mapproj_1.2.7.tar.gz" ], "version": "1.2.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mapproj_1.2.8.tar.gz" ], "version": "1.2.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mapproj_1.2.9.tar.gz" ], "version": "1.2.9" } ] }, "r-maps": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/maps_3.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/maps_3.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/maps_3.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/maps_3.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/maps_3.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/maps_3.1.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=maps" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-maps", "patches": [], "summary": "Draw Geographical Maps. Display of maps. Projection code and larger maps\nare in separate packages ('mapproj' and 'mapdata').\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/maps_3.1.1.tar.gz" ], "version": "3.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/maps_3.2.0.tar.gz" ], "version": "3.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/maps_3.3.0.tar.gz" ], "version": "3.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/maps_3.4.0.tar.gz" ], "version": "3.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/maps_3.4.1.tar.gz" ], "version": "3.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/maps_3.4.2.tar.gz" ], "version": "3.4.2" } ] }, "r-maptools": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-foreign", "r-lattice", "r-sp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/maptools_1.1-8.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=maptools" ], "licenses": [], "maintainers": [], "name": "r-maptools", "patches": [], "summary": "Tools for Handling Spatial Objects. Set of tools for manipulating and\nreading geographic data, in particular ESRI shapefiles; C code used from\nshapelib. It includes binary access to GSHHG shoreline files. The\npackage also provides interface wrappers for exchanging spatial objects\nwith packages such as PBSmapping, spatstat, maps, RArcInfo, Stata tmap,\nWinBUGS, Mondrian, and others.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/maptools_1.1-8.tar.gz" ], "version": "1.1-8" } ] }, "r-mapview": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-base64enc", "r-htmltools", "r-htmlwidgets", "r-lattice", "r-leafem", "r-leaflet", "r-leafpop", "r-png", "r-raster", "r-satellite", "r-scales", "r-servr", "r-sf", "r-sp", "r-webshot" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mapview_2.11.2.tar.gz", "https://cloud.r-project.org/src/contrib/mapview_2.11.0.tar.gz", "https://cloud.r-project.org/src/contrib/mapview_2.10.0.tar.gz", "https://cloud.r-project.org/src/contrib/mapview_2.9.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mapview" ], "licenses": [ "GPL-3.0-or-later OR custom" ], "maintainers": [], "name": "r-mapview", "patches": [], "summary": "Interactive Viewing of Spatial Data in R. Quickly and conveniently\ncreate interactive visualisations of spatial data with or without\nbackground maps. Attributes of displayed features are fully queryable\nvia pop-up windows. 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Provides R bindings to the\n'Sundown' 'Markdown' rendering library (https://github.com/vmg/sundown).\n'Markdown' is a plain-text formatting syntax that can be converted to\n'XHTML' or other formats. See https://en.wikipedia.org/wiki/Markdown for\nmore information about 'Markdown'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/markdown_0.7.7.tar.gz" ], "version": "0.7.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/markdown_0.8.tar.gz" ], "version": "0.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/markdown_0.9.tar.gz" ], "version": "0.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/markdown_1.0.tar.gz" ], "version": "1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/markdown_1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/markdown_1.13.tar.gz" ], "version": "1.13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/markdown_1.3.tar.gz" ], "version": "1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/markdown_1.6.tar.gz" ], "version": "1.6" } ] }, "r-marray": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-limma" ], "downloads": [ "https://git.bioconductor.org/packages/marray" ], "homepages": [ "https://bioconductor.org/packages/marray" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-marray", "patches": [], "summary": "Exploratory analysis for two-color spotted microarray data. Class\ndefinitions for two-color spotted microarray data. Fuctions for data\ninput, diagnostic plots, normalization and quality checking.\n", "version": [ { "repositories": [ { "commit": "67b3080486abdba7dd19fccd7fb731b0e8b5b3f9", "type": "git", "url": "https://git.bioconductor.org/packages/marray" } ], "version": "1.68.0" }, { "repositories": [ { "commit": "da35e8b8d2c9ef17e779013a5d252f38a1c66633", "type": "git", "url": "https://git.bioconductor.org/packages/marray" } ], "version": "1.72.0" }, { "repositories": [ { "commit": "9130a936fffb7d2d445ff21d04520e78b62625ac", "type": "git", "url": "https://git.bioconductor.org/packages/marray" } ], "version": "1.74.0" }, { "repositories": [ { "commit": "88cb0fd21cc60ac65410ca4314eca2e351933ec5", "type": "git", "url": "https://git.bioconductor.org/packages/marray" } ], "version": "1.76.0" }, { "repositories": [ { "commit": "97d74b2af40568eda445378b4708a2e2d33291cd", "type": "git", "url": "https://git.bioconductor.org/packages/marray" } ], "version": "1.78.0" } ] }, "r-mass": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/MASS_7.3-61.tar.gz", "https://cloud.r-project.org/src/contrib/MASS_7.3-59.tar.gz", "https://cloud.r-project.org/src/contrib/MASS_7.3-58.1.tar.gz", "https://cloud.r-project.org/src/contrib/MASS_7.3-57.tar.gz", "https://cloud.r-project.org/src/contrib/MASS_7.3-55.tar.gz", "https://cloud.r-project.org/src/contrib/MASS_7.3-54.tar.gz", "https://cloud.r-project.org/src/contrib/MASS_7.3-53.tar.gz", "https://cloud.r-project.org/src/contrib/MASS_7.3-51.5.tar.gz", "https://cloud.r-project.org/src/contrib/MASS_7.3-51.4.tar.gz", "https://cloud.r-project.org/src/contrib/MASS_7.3-51.3.tar.gz", "https://cloud.r-project.org/src/contrib/MASS_7.3-47.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=MASS" ], "licenses": [], "maintainers": [], "name": "r-mass", "patches": [], "summary": "Support Functions and Datasets for Venables and Ripley's MASS. Functions\nand datasets to support Venables and Ripley, \"Modern Applied Statistics\nwith S\" (4th edition, 2002).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/MASS_7.3-47.tar.gz" ], "version": "7.3-47" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MASS_7.3-51.3.tar.gz" ], "version": "7.3-51.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MASS_7.3-51.4.tar.gz" ], "version": "7.3-51.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MASS_7.3-51.5.tar.gz" ], "version": "7.3-51.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MASS_7.3-53.tar.gz" ], "version": "7.3-53" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MASS_7.3-54.tar.gz" ], "version": "7.3-54" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MASS_7.3-55.tar.gz" ], "version": "7.3-55" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MASS_7.3-57.tar.gz" ], "version": "7.3-57" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MASS_7.3-58.1.tar.gz" ], "version": "7.3-58.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MASS_7.3-59.tar.gz" ], "version": "7.3-59" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MASS_7.3-61.tar.gz" ], "version": "7.3-61" } ] }, "r-mathjaxr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mathjaxr_1.6-0.tar.gz", "https://cloud.r-project.org/src/contrib/mathjaxr_1.4-0.tar.gz", "https://cloud.r-project.org/src/contrib/mathjaxr_1.0-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mathjaxr" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-mathjaxr", "patches": [], "summary": "Using 'Mathjax' in Rd Files. Provides 'MathJax' and macros to enable its\nuse within Rd files for rendering equations in the HTML help files.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/mathjaxr_1.0-1.tar.gz" ], "version": "1.0-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mathjaxr_1.4-0.tar.gz" ], "version": "1.4-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mathjaxr_1.6-0.tar.gz" ], "version": "1.6-0" } ] }, "r-matlab": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/matlab_1.0.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/matlab_1.0.4.tar.gz", "https://cloud.r-project.org/src/contrib/matlab_1.0.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=matlab" ], "licenses": [ "Artistic-2.0" ], "maintainers": [], "name": "r-matlab", "patches": [], "summary": "MATLAB emulation package. Emulate MATLAB code using R.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/matlab_1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/matlab_1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/matlab_1.0.4.1.tar.gz" ], "version": "1.0.4.1" } ] }, "r-matr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-biom-utils", "r-mgraster" ], "downloads": [ "https://cloud.r-project.org/src/contrib/matR_0.9.1.tar.gz", "https://cloud.r-project.org/src/contrib/matR_0.9.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=matR" ], "licenses": [], "maintainers": [], "name": "r-matr", "patches": [], "summary": "Metagenomics Analysis Tools. Package matR (Metagenomics Analysis Tools\nfor R) is an analysis client for the MG-RAST metagenome annotation\nengine, part of the US Department of Energy (DOE) Systems Biology\nKnowledge Base (KBase). Customized analysis and visualization tools\nsecurely access remote data and metadata within the popular open source\nR language and environment for statistical computing.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/matR_0.9.tar.gz" ], "version": "0.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/matR_0.9.1.tar.gz" ], "version": "0.9.1" } ] }, "r-matrix": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gettext", "gmake", "r", "r-lattice" ], "downloads": [ "https://cloud.r-project.org/src/contrib/Matrix_1.7-0.tar.gz", "https://cloud.r-project.org/src/contrib/Matrix_1.5-4.tar.gz", "https://cloud.r-project.org/src/contrib/Matrix_1.5-1.tar.gz", "https://cloud.r-project.org/src/contrib/Matrix_1.4-1.tar.gz", "https://cloud.r-project.org/src/contrib/Matrix_1.4-0.tar.gz", "https://cloud.r-project.org/src/contrib/Matrix_1.3-4.tar.gz", "https://cloud.r-project.org/src/contrib/Matrix_1.3-3.tar.gz", "https://cloud.r-project.org/src/contrib/Matrix_1.3-2.tar.gz", "https://cloud.r-project.org/src/contrib/Matrix_1.2-17.tar.gz", "https://cloud.r-project.org/src/contrib/Matrix_1.2-14.tar.gz", "https://cloud.r-project.org/src/contrib/Matrix_1.2-11.tar.gz", "https://cloud.r-project.org/src/contrib/Matrix_1.2-8.tar.gz", "https://cloud.r-project.org/src/contrib/Matrix_1.2-6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=Matrix" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-matrix", "patches": [], "summary": "Sparse and Dense Matrix Classes and Methods. A rich hierarchy of matrix\nclasses, including triangular, symmetric, and diagonal matrices, both\ndense and sparse and with pattern, logical and numeric entries. Numerous\nmethods for and operations on these matrices, using 'LAPACK' and\n'SuiteSparse' libraries.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/Matrix_1.2-11.tar.gz" ], "version": "1.2-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Matrix_1.2-14.tar.gz" ], "version": "1.2-14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Matrix_1.2-17.tar.gz" ], "version": "1.2-17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Matrix_1.2-6.tar.gz" ], "version": "1.2-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Matrix_1.2-8.tar.gz" ], "version": "1.2-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Matrix_1.3-2.tar.gz" ], "version": "1.3-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Matrix_1.3-3.tar.gz" ], "version": "1.3-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Matrix_1.3-4.tar.gz" ], "version": "1.3-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Matrix_1.4-0.tar.gz" ], "version": "1.4-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Matrix_1.4-1.tar.gz" ], "version": "1.4-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Matrix_1.5-1.tar.gz" ], "version": "1.5-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Matrix_1.5-4.tar.gz" ], "version": "1.5-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Matrix_1.7-0.tar.gz" ], "version": "1.7-0" } ] }, "r-matrixgenerics": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-matrixstats" ], "downloads": [ "https://git.bioconductor.org/packages/MatrixGenerics" ], "homepages": [ "https://bioconductor.org/packages/MatrixGenerics" ], "licenses": [], "maintainers": [], "name": "r-matrixgenerics", "patches": [], "summary": "S4 Generic Summary Statistic Functions that Operate on Matrix-Like\nObjects. S4 generic functions modeled after the 'matrixStats' API for\nalternative matrix implementations. Packages with alternative matrix\nimplementation can depend on this package and implement the generic\nfunctions that are defined here for a useful set of row and column\nsummary statistics. Other package developers can import this package and\nhandle a different matrix implementations without worrying about\nincompatibilities.\n", "version": [ { "repositories": [ { "commit": "6d9d907e8c4d1fc96a32160fb9f3ab805d6eb356", "type": "git", "url": "https://git.bioconductor.org/packages/MatrixGenerics" } ], "version": "1.10.0" }, { "repositories": [ { "commit": "442fde27fdf18ee3460ea0258a74a847b2c99cf3", "type": "git", "url": "https://git.bioconductor.org/packages/MatrixGenerics" } ], "version": "1.12.0" }, { "repositories": [ { "commit": "abcc9ca0504e0b915cd7933a3169a8e9e5bd2fe9", "type": "git", "url": "https://git.bioconductor.org/packages/MatrixGenerics" } ], "version": "1.2.1" }, { "repositories": [ { "commit": "4588a60e5cc691424c17faa281bdd7d99d83ec34", "type": "git", "url": "https://git.bioconductor.org/packages/MatrixGenerics" } ], "version": "1.6.0" }, { "repositories": [ { "commit": "e4cc34d53bcfb9a5914afd79fda31ecd5037a47a", "type": "git", "url": "https://git.bioconductor.org/packages/MatrixGenerics" } ], "version": "1.8.0" }, { "repositories": [ { "commit": "a4a21089e9f78275dd4a6f0df0c4b6b45c4650c7", "type": "git", "url": "https://git.bioconductor.org/packages/MatrixGenerics" } ], "version": "1.8.1" } ] }, "r-matrixmodels": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-matrix" ], "downloads": [ "https://cloud.r-project.org/src/contrib/MatrixModels_0.5-3.tar.gz", "https://cloud.r-project.org/src/contrib/MatrixModels_0.5-1.tar.gz", "https://cloud.r-project.org/src/contrib/MatrixModels_0.5-0.tar.gz", "https://cloud.r-project.org/src/contrib/MatrixModels_0.4-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=MatrixModels" ], "licenses": [], "maintainers": [], "name": "r-matrixmodels", "patches": [], "summary": "Modelling with Sparse and Dense Matrices. Modelling with sparse and\ndense 'Matrix' matrices, using modular prediction and response module\nclasses.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/MatrixModels_0.4-1.tar.gz" ], "version": "0.4-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MatrixModels_0.5-0.tar.gz" ], "version": "0.5-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MatrixModels_0.5-1.tar.gz" ], "version": "0.5-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MatrixModels_0.5-3.tar.gz" ], "version": "0.5-3" } ] }, "r-matrixstats": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/matrixStats_1.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/matrixStats_1.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/matrixStats_0.63.0.tar.gz", "https://cloud.r-project.org/src/contrib/matrixStats_0.62.0.tar.gz", "https://cloud.r-project.org/src/contrib/matrixStats_0.61.0.tar.gz", "https://cloud.r-project.org/src/contrib/matrixStats_0.58.0.tar.gz", "https://cloud.r-project.org/src/contrib/matrixStats_0.57.0.tar.gz", "https://cloud.r-project.org/src/contrib/matrixStats_0.55.0.tar.gz", "https://cloud.r-project.org/src/contrib/matrixStats_0.54.0.tar.gz", "https://cloud.r-project.org/src/contrib/matrixStats_0.52.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=matrixStats" ], "licenses": [], "maintainers": [], "name": "r-matrixstats", "patches": [], "summary": "Functions that Apply to Rows and Columns of Matrices (and to Vectors).\nHigh-performing functions operating on rows and columns of matrices,\ne.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions\noptimized per data type and for subsetted calculations such that both\nmemory usage and processing time is minimized. There are also optimized\nvector-based methods, e.g. binMeans(), madDiff() and weightedMedian().\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/matrixStats_0.52.2.tar.gz" ], "version": "0.52.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/matrixStats_0.54.0.tar.gz" ], "version": "0.54.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/matrixStats_0.55.0.tar.gz" ], "version": "0.55.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/matrixStats_0.57.0.tar.gz" ], "version": "0.57.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/matrixStats_0.58.0.tar.gz" ], "version": "0.58.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/matrixStats_0.61.0.tar.gz" ], "version": "0.61.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/matrixStats_0.62.0.tar.gz" ], "version": "0.62.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/matrixStats_0.63.0.tar.gz" ], "version": "0.63.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/matrixStats_1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/matrixStats_1.5.0.tar.gz" ], "version": "1.5.0" } ] }, "r-mclogit": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-matrix", "r-memisc" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mclogit_0.9.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mclogit" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-mclogit", "patches": [], "summary": "Multinomial Logit Models, with or without Random Effects or\nOverdispersion. Provides estimators for multinomial logit models in\ntheir conditional logit and baseline logit variants, with or without\nrandom effects, with or without overdispersion. Random effects models\nare estimated using the PQL technique (based on a Laplace approximation)\nor the MQL technique (based on a Solomon-Cox approximation). Estimates\nshould be treated with caution if the group sizes are small.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/mclogit_0.9.6.tar.gz" ], "version": "0.9.6" } ] }, "r-mclust": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mclust_6.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/mclust_6.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/mclust_5.4.10.tar.gz", "https://cloud.r-project.org/src/contrib/mclust_5.4.9.tar.gz", "https://cloud.r-project.org/src/contrib/mclust_5.4.7.tar.gz", "https://cloud.r-project.org/src/contrib/mclust_5.4.5.tar.gz", "https://cloud.r-project.org/src/contrib/mclust_5.4.4.tar.gz", "https://cloud.r-project.org/src/contrib/mclust_5.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mclust" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-mclust", "patches": [], "summary": "Gaussian Mixture Modelling for Model-Based Clustering, Classification,\nand Density Estimation. Gaussian finite mixture models fitted via EM\nalgorithm for model-based clustering, classification, and density\nestimation, including Bayesian regularization, dimension reduction for\nvisualisation, and resampling-based inference.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/mclust_5.3.tar.gz" ], "version": "5.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mclust_5.4.10.tar.gz" ], "version": "5.4.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mclust_5.4.4.tar.gz" ], "version": "5.4.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mclust_5.4.5.tar.gz" ], "version": "5.4.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mclust_5.4.7.tar.gz" ], "version": "5.4.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mclust_5.4.9.tar.gz" ], "version": "5.4.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mclust_6.0.0.tar.gz" ], "version": "6.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mclust_6.1.1.tar.gz" ], "version": "6.1.1" } ] }, "r-mcmc": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mcmc_0.9-8.tar.gz", "https://cloud.r-project.org/src/contrib/mcmc_0.9-7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mcmc" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-mcmc", "patches": [], "summary": "Markov Chain Monte Carlo. Simulates continuous distributions of random\nvectors using Markov chain Monte Carlo (MCMC). Users specify the\ndistribution by an R function that evaluates the log unnormalized\ndensity. Algorithms are random walk Metropolis algorithm (function\nmetrop), simulated tempering (function temper), and morphometric random\nwalk Metropolis (Johnson and Geyer, 2012, ,\nfunction morph.metrop), which achieves geometric ergodicity by change of\nvariable.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/mcmc_0.9-7.tar.gz" ], "version": "0.9-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mcmc_0.9-8.tar.gz" ], "version": "0.9-8" } ] }, "r-mcmcglmm": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-ape", "r-coda", "r-corpcor", "r-cubature", "r-matrix", "r-tensora" ], "downloads": [ "https://cloud.r-project.org/src/contrib/MCMCglmm_2.36.tar.gz", "https://cloud.r-project.org/src/contrib/MCMCglmm_2.34.tar.gz", "https://cloud.r-project.org/src/contrib/MCMCglmm_2.33.tar.gz", "https://cloud.r-project.org/src/contrib/MCMCglmm_2.32.tar.gz", "https://cloud.r-project.org/src/contrib/MCMCglmm_2.30.tar.gz", "https://cloud.r-project.org/src/contrib/MCMCglmm_2.29.tar.gz", "https://cloud.r-project.org/src/contrib/MCMCglmm_2.28.tar.gz", "https://cloud.r-project.org/src/contrib/MCMCglmm_2.25.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=MCMCglmm" ], "licenses": [], "maintainers": [], "name": "r-mcmcglmm", "patches": [], "summary": "MCMC Generalised Linear Mixed Models. Fits Multivariate Generalised\nLinear Mixed Models (and related models) using Markov chain Monte Carlo\ntechniques (Hadfield 2010 J. Stat. Soft.).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/MCMCglmm_2.25.tar.gz" ], "version": "2.25" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MCMCglmm_2.28.tar.gz" ], "version": "2.28" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MCMCglmm_2.29.tar.gz" ], "version": "2.29" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MCMCglmm_2.30.tar.gz" ], "version": "2.30" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MCMCglmm_2.32.tar.gz" ], "version": "2.32" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MCMCglmm_2.33.tar.gz" ], "version": "2.33" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MCMCglmm_2.34.tar.gz" ], "version": "2.34" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MCMCglmm_2.36.tar.gz" ], "version": "2.36" } ] }, "r-mcmcpack": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-coda", "r-lattice", "r-mass", "r-mcmc", "r-quantreg" ], "downloads": [ "https://cloud.r-project.org/src/contrib/MCMCpack_1.7-0.tar.gz", "https://cloud.r-project.org/src/contrib/MCMCpack_1.6-3.tar.gz", "https://cloud.r-project.org/src/contrib/MCMCpack_1.6-0.tar.gz", "https://cloud.r-project.org/src/contrib/MCMCpack_1.5-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=MCMCpack" ], "licenses": [], "maintainers": [], "name": "r-mcmcpack", "patches": [], "summary": "Markov Chain Monte Carlo (MCMC) Package. Contains functions to perform\nBayesian inference using posterior simulation for a number of\nstatistical models. Most simulation is done in compiled C++ written in\nthe Scythe Statistical Library Version 1.0.3. All models return 'coda'\nmcmc objects that can then be summarized using the 'coda' package. Some\nuseful utility functions such as density functions, pseudo-random number\ngenerators for statistical distributions, a general purpose Metropolis\nsampling algorithm, and tools for visualization are provided.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/MCMCpack_1.5-0.tar.gz" ], "version": "1.5-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MCMCpack_1.6-0.tar.gz" ], "version": "1.6-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MCMCpack_1.6-3.tar.gz" ], "version": "1.6-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MCMCpack_1.7-0.tar.gz" ], "version": "1.7-0" } ] }, "r-mco": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mco_1.17.tar.gz", "https://cloud.r-project.org/src/contrib/mco_1.15.6.tar.gz", "https://cloud.r-project.org/src/contrib/mco_1.0-15.1.tar.gz", "https://cloud.r-project.org/src/contrib/mco_1.0-15.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mco" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-mco", "patches": [], "summary": "Multiple Criteria Optimization Algorithms and Related Functions. A\ncollection of function to solve multiple criteria optimization problems\nusing genetic algorithms (NSGA-II). Also included is a collection of\ntest functions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/mco_1.0-15.tar.gz" ], "version": "1.0-15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mco_1.0-15.1.tar.gz" ], "version": "1.0-15.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mco_1.15.6.tar.gz" ], "version": "1.15.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mco_1.17.tar.gz" ], "version": "1.17" } ] }, "r-mda": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-class" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mda_0.5-4.tar.gz", "https://cloud.r-project.org/src/contrib/mda_0.5-3.tar.gz", "https://cloud.r-project.org/src/contrib/mda_0.5-2.tar.gz", "https://cloud.r-project.org/src/contrib/mda_0.4-10.tar.gz", "https://cloud.r-project.org/src/contrib/mda_0.4-9.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mda" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-mda", "patches": [], "summary": "Mixture and Flexible Discriminant Analysis. Mixture and flexible\ndiscriminant analysis, multivariate adaptive regression splines (MARS),\nBRUTO.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/mda_0.4-10.tar.gz" ], "version": "0.4-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mda_0.4-9.tar.gz" ], "version": "0.4-9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mda_0.5-2.tar.gz" ], "version": "0.5-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mda_0.5-3.tar.gz" ], "version": "0.5-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mda_0.5-4.tar.gz" ], "version": "0.5-4" } ] }, "r-memisc": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-data-table", "r-jsonlite", "r-lattice", "r-mass", "r-yaml" ], "downloads": [ "https://cloud.r-project.org/src/contrib/memisc_0.99.31.7.tar.gz", "https://cloud.r-project.org/src/contrib/memisc_0.99.31.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=memisc" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-memisc", "patches": [], "summary": "Management of Survey Data and Presentation of Analysis Results. An\ninfrastructure for the management of survey data including value labels,\ndefinable missing values, recoding of variables, production of code\nbooks, and import of (subsets of) 'SPSS' and 'Stata' files is provided.\nFurther, the package allows to produce tables and data frames of\narbitrary descriptive statistics and (almost) publication-ready tables\nof regression model estimates, which can be exported to 'LaTeX' and\nHTML.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/memisc_0.99.31.6.tar.gz" ], "version": "0.99.31.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/memisc_0.99.31.7.tar.gz" ], "version": "0.99.31.7" } ] }, "r-memoise": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cachem", "r-digest", "r-rlang" ], "downloads": [ "https://cloud.r-project.org/src/contrib/memoise_2.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/memoise_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/memoise_1.0.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=memoise" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-memoise", "patches": [], "summary": "'Memoisation' of Functions. Cache the results of a function so that when\nyou call it again with the same arguments it returns the pre-computed\nvalue.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/memoise_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/memoise_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/memoise_2.0.1.tar.gz" ], "version": "2.0.1" } ] }, "r-memuse": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/memuse_4.2-3.tar.gz", "https://cloud.r-project.org/src/contrib/memuse_4.2-2.tar.gz", "https://cloud.r-project.org/src/contrib/memuse_4.2-1.tar.gz", "https://cloud.r-project.org/src/contrib/memuse_4.1-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=memuse" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [ "dorton21" ], "name": "r-memuse", "patches": [], "summary": "Memory Estimation Utilities. How much ram do you need to store a 100,000\nby 100,000 matrix? How much ram is your current R session using? How\nmuch ram do you even have? Learn the scintillating answer to these and\nmany more such questions with the 'memuse' package.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/memuse_4.1-0.tar.gz" ], "version": "4.1-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/memuse_4.2-1.tar.gz" ], "version": "4.2-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/memuse_4.2-2.tar.gz" ], "version": "4.2-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/memuse_4.2-3.tar.gz" ], "version": "4.2-3" } ] }, "r-mendelianrandomization": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-ggplot2", "r-glmnet", "r-iterpc", "r-knitr", "r-matrix", "r-numderiv", "r-plotly", "r-quantreg", "r-rcpp", "r-rcpparmadillo", "r-rjson", "r-rmarkdown", "r-robustbase" ], "downloads": [ "https://cloud.r-project.org/src/contrib/MendelianRandomization_0.10.0.tar.gz", "https://cloud.r-project.org/src/contrib/MendelianRandomization_0.7.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=MendelianRandomization" ], "licenses": [], "maintainers": [], "name": "r-mendelianrandomization", "patches": [], "summary": "Mendelian Randomization Package. Encodes several methods for performing\nMendelian randomization analyses with summarized data. Summarized data\non genetic associations with the exposure and with the outcome can be\nobtained from large consortia. These data can be used for obtaining\ncausal estimates using instrumental variable methods.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/MendelianRandomization_0.10.0.tar.gz" ], "version": "0.10.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MendelianRandomization_0.7.0.tar.gz" ], "version": "0.7.0" } ] }, "r-mergemaid": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-biobase", "r-mass", "r-survival" ], "downloads": [ "https://git.bioconductor.org/packages/MergeMaid" ], "homepages": [ "https://bioconductor.org/packages/MergeMaid" ], "licenses": [], "maintainers": [], "name": "r-mergemaid", "patches": [], "summary": "Merge Maid. The functions in this R extension are intended for cross-\nstudy comparison of gene expression array data. Required from the user\nis gene expression matrices, their corresponding gene-id vectors and\nother useful information, and they could be 'list','matrix', or\n'ExpressionSet'. The main function is 'mergeExprs' which transforms the\ninput objects into data in the merged format, such that common genes in\ndifferent datasets can be easily found. And the function 'intcor'\ncalculate the correlation coefficients. Other functions use the output\nfrom 'modelOutcome' to graphically display the results and cross-\nvalidate associations of gene expression data with survival.\n", "version": [ { "repositories": [ { "commit": "aee89c523fcafff4c166ff3db4fff90df16a1ed4", "type": "git", "url": "https://git.bioconductor.org/packages/MergeMaid" } ], "version": "2.48.0" }, { "repositories": [ { "commit": "b77d7fcb8ac8cf9ee71303bb193ef1a36a7f6049", "type": "git", "url": "https://git.bioconductor.org/packages/MergeMaid" } ], "version": "2.50.0" }, { "repositories": [ { "commit": "88a1ddfd9cdbe902ba40fae0f39ee5665ac33a74", "type": "git", "url": "https://git.bioconductor.org/packages/MergeMaid" } ], "version": "2.52.0" }, { "repositories": [ { "commit": "8e79bd2bd06b25138b3c5107681c89d714a3b194", "type": "git", "url": "https://git.bioconductor.org/packages/MergeMaid" } ], "version": "2.54.0" }, { "repositories": [ { "commit": "c510d1d85bb39476e8397b24c4bc127780a17686", "type": "git", "url": "https://git.bioconductor.org/packages/MergeMaid" } ], "version": "2.56.0" } ] }, "r-meta": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-compquadform", "r-dplyr", "r-lme4", "r-magrittr", "r-metadat", "r-metafor", "r-purrr", "r-readr", "r-stringr", "r-xml2" ], "downloads": [ "https://cloud.r-project.org/src/contrib/meta_7.0-0.tar.gz", "https://cloud.r-project.org/src/contrib/meta_6.2-1.tar.gz", "https://cloud.r-project.org/src/contrib/meta_6.2-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=meta" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-meta", "patches": [], "summary": "General Package for Meta-Analysis. User-friendly general package\nproviding standard methods for meta-analysis and supporting Schwarzer,\nCarpenter, and R\u00fccker , \"Meta-Analysis\nwith R\" (2015): - common effect and random effects meta-analysis; -\nseveral plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat,\nbubble); - three-level meta-analysis model; - generalised linear mixed\nmodel; - Hartung-Knapp method for random effects model; - Kenward-Roger\nmethod for random effects model; - prediction interval; - statistical\ntests for funnel plot asymmetry; - trim-and-fill method to evaluate bias\nin meta-analysis; - meta-regression; - cumulative meta-analysis and\nleave-one-out meta-analysis; - import data from 'RevMan 5'; - produce\nforest plot summarising several (subgroup) meta-analyses.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/meta_6.2-0.tar.gz" ], "version": "6.2-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/meta_6.2-1.tar.gz" ], "version": "6.2-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/meta_7.0-0.tar.gz" ], "version": "7.0-0" } ] }, "r-metadat": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-mathjaxr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/metadat_1.2-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=metadat" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-metadat", "patches": [], "summary": "Meta-Analysis Datasets. A collection of meta-analysis datasets for\nteaching purposes, illustrating/testing meta-analytic methods, and\nvalidating published analyses.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/metadat_1.2-0.tar.gz" ], "version": "1.2-0" } ] }, "r-metafor": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-mathjaxr", "r-matrix", "r-metadat", "r-nlme", "r-numderiv", "r-pbapply" ], "downloads": [ "https://cloud.r-project.org/src/contrib/metafor_4.6-0.tar.gz", "https://cloud.r-project.org/src/contrib/metafor_4.0-0.tar.gz", "https://cloud.r-project.org/src/contrib/metafor_3.8-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=metafor" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-metafor", "patches": [], "summary": "Meta-Analysis Package for R. A comprehensive collection of functions for\nconducting meta-analyses in R. The package includes functions to\ncalculate various effect sizes or outcome measures, fit equal-, fixed-,\nrandom-, and mixed-effects models to such data, carry out moderator and\nmeta-regression analyses, and create various types of meta-analytical\nplots (e.g., forest, funnel, radial, L'Abbe, Baujat, bubble, and GOSH\nplots). For meta-analyses of binomial and person-time data, the package\nalso provides functions that implement specialized methods, including\nthe Mantel-Haenszel method, Peto's method, and a variety of suitable\ngeneralized linear (mixed-effects) models (i.e., mixed-effects logistic\nand Poisson regression models). Finally, the package provides\nfunctionality for fitting meta-analytic multivariate/multilevel models\nthat account for non-independent sampling errors and/or true effects\n(e.g., due to the inclusion of multiple treatment studies, multiple\nendpoints, or other forms of clustering). Network meta-analyses and\nmeta-analyses accounting for known correlation structures (e.g., due to\nphylogenetic relatedness) can also be conducted. An introduction to the\npackage can be found in Viechtbauer (2010) .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/metafor_3.8-1.tar.gz" ], "version": "3.8-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/metafor_4.0-0.tar.gz" ], "version": "4.0-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/metafor_4.6-0.tar.gz" ], "version": "4.6-0" } ] }, "r-metap": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-lattice", "r-mathjaxr", "r-mutoss", "r-qqconf", "r-rdpack", "r-tfisher" ], "downloads": [ "https://cloud.r-project.org/src/contrib/metap_1.11.tar.gz", "https://cloud.r-project.org/src/contrib/metap_1.8.tar.gz", "https://cloud.r-project.org/src/contrib/metap_1.7.tar.gz", "https://cloud.r-project.org/src/contrib/metap_1.4.tar.gz", "https://cloud.r-project.org/src/contrib/metap_1.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=metap" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-metap", "patches": [], "summary": "Meta-Analysis of Significance Values. The canonical way to perform meta-\nanalysis involves using effect sizes. When they are not available this\npackage provides a number of methods for meta-analysis of significance\nvalues including the methods of Edgington, Fisher, Lancaster, Stouffer,\nTippett, and Wilkinson; a number of data-sets to replicate published\nresults; and a routine for graphical display.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/metap_1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/metap_1.11.tar.gz" ], "version": "1.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/metap_1.4.tar.gz" ], "version": "1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/metap_1.7.tar.gz" ], "version": "1.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/metap_1.8.tar.gz" ], "version": "1.8" } ] }, "r-metapod": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-rcpp" ], "downloads": [ "https://git.bioconductor.org/packages/metapod" ], "homepages": [ "https://bioconductor.org/packages/metapod" ], "licenses": [], "maintainers": [], "name": "r-metapod", "patches": [], "summary": "Meta-Analyses on P-Values of Differential Analyses. Implements a variety\nof methods for combining p-values in differential analyses of genome-\nscale datasets. Functions can combine p-values across different tests in\nthe same analysis (e.g., genomic windows in ChIP-seq, exons in RNA-seq)\nor for corresponding tests across separate analyses (e.g., replicated\ncomparisons, effect of different treatment conditions). Support is\nprovided for handling log-transformed input p-values, missing values and\nweighting where appropriate.\n", "version": [ { "repositories": [ { "commit": "e71c2072e5b39f74599e279b28f4da7923b515fb", "type": "git", "url": "https://git.bioconductor.org/packages/metapod" } ], "version": "1.4.0" }, { "repositories": [ { "commit": "cfeaa959f5c6b2119df270f40af9c3ea718c4b00", "type": "git", "url": "https://git.bioconductor.org/packages/metapod" } ], "version": "1.6.0" }, { "repositories": [ { "commit": "6ac6999182d581ed579d2f7535e838b084f67b8d", "type": "git", "url": "https://git.bioconductor.org/packages/metapod" } ], "version": "1.8.0" } ] }, "r-methylumi": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotate", "r-annotationdbi", "r-biobase", "r-biocgenerics", "r-fdb-infiniummethylation-hg19", "r-genefilter", "r-genomeinfodb", "r-genomicfeatures", "r-genomicranges", "r-ggplot2", "r-illuminaio", "r-iranges", "r-lattice", "r-matrixstats", "r-minfi", "r-reshape2", "r-s4vectors", "r-scales", "r-summarizedexperiment" ], "downloads": [ "https://git.bioconductor.org/packages/methylumi" ], "homepages": [ "https://bioconductor.org/packages/methylumi" ], "licenses": [], "maintainers": [], "name": "r-methylumi", "patches": [], "summary": "Handle Illumina methylation data. This package provides classes for\nholding and manipulating Illumina methylation data. Based on eSet, it\ncan contain MIAME information, sample information, feature information,\nand multiple matrices of data. An \"intelligent\" import function,\nmethylumiR can read the Illumina text files and create a MethyLumiSet.\nmethylumIDAT can directly read raw IDAT files from HumanMethylation27\nand HumanMethylation450 microarrays. Normalization, background\ncorrection, and quality control features for GoldenGate, Infinium, and\nInfinium HD arrays are also included.\n", "version": [ { "repositories": [ { "commit": "e2a29c1b214c0d43c7325d176f9ce41dcf8e2f9d", "type": "git", "url": "https://git.bioconductor.org/packages/methylumi" } ], "version": "2.32.0" }, { "repositories": [ { "commit": "5fb0b609f9c9181ac99f902745958774e5489606", "type": "git", "url": "https://git.bioconductor.org/packages/methylumi" } ], "version": "2.36.0" }, { "repositories": [ { "commit": "211039225ca6fca9af75b8266f656161912ce10f", "type": "git", "url": "https://git.bioconductor.org/packages/methylumi" } ], "version": "2.40.1" }, { "repositories": [ { "commit": "73e9c7fe1252c4ca20dc7b4e58decf04bf22d5e0", "type": "git", "url": "https://git.bioconductor.org/packages/methylumi" } ], "version": "2.42.0" }, { "repositories": [ { "commit": "8f1f1f944993800da2776cb3240b4482c09429ad", "type": "git", "url": "https://git.bioconductor.org/packages/methylumi" } ], "version": "2.44.0" }, { "repositories": [ { "commit": "eb09e6508f1619c789d6b3091a8065cb6571cdac", "type": "git", "url": "https://git.bioconductor.org/packages/methylumi" } ], "version": "2.46.0" } ] }, "r-mgcv": { "alias": [], "categories": [], "dependencies": [ "c", "gettext", "gmake", "r", "r-matrix", "r-nlme" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mgcv_1.9-1.tar.gz", "https://cloud.r-project.org/src/contrib/mgcv_1.8-42.tar.gz", "https://cloud.r-project.org/src/contrib/mgcv_1.8-41.tar.gz", "https://cloud.r-project.org/src/contrib/mgcv_1.8-40.tar.gz", "https://cloud.r-project.org/src/contrib/mgcv_1.8-38.tar.gz", "https://cloud.r-project.org/src/contrib/mgcv_1.8-33.tar.gz", "https://cloud.r-project.org/src/contrib/mgcv_1.8-28.tar.gz", "https://cloud.r-project.org/src/contrib/mgcv_1.8-27.tar.gz", "https://cloud.r-project.org/src/contrib/mgcv_1.8-22.tar.gz", "https://cloud.r-project.org/src/contrib/mgcv_1.8-21.tar.gz", "https://cloud.r-project.org/src/contrib/mgcv_1.8-20.tar.gz", "https://cloud.r-project.org/src/contrib/mgcv_1.8-19.tar.gz", "https://cloud.r-project.org/src/contrib/mgcv_1.8-18.tar.gz", "https://cloud.r-project.org/src/contrib/mgcv_1.8-17.tar.gz", "https://cloud.r-project.org/src/contrib/mgcv_1.8-16.tar.gz", "https://cloud.r-project.org/src/contrib/mgcv_1.8-13.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mgcv" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-mgcv", "patches": [], "summary": "Mixed GAM Computation Vehicle with Automatic Smoothness Estimation.\nGeneralized additive (mixed) models, some of their extensions and other\ngeneralized ridge regression with multiple smoothing parameter\nestimation by (Restricted) Marginal Likelihood, Generalized Cross\nValidation and similar, or using iterated nested Laplace approximation\nfor fully Bayesian inference. See Wood (2017)\n for an overview. Includes a gam() function,\na wide variety of smoothers, 'JAGS' support and distributions beyond the\nexponential family.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/mgcv_1.8-13.tar.gz" ], "version": "1.8-13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mgcv_1.8-16.tar.gz" ], "version": "1.8-16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mgcv_1.8-17.tar.gz" ], "version": "1.8-17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mgcv_1.8-18.tar.gz" ], "version": "1.8-18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mgcv_1.8-19.tar.gz" ], "version": "1.8-19" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mgcv_1.8-20.tar.gz" ], "version": "1.8-20" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mgcv_1.8-21.tar.gz" ], "version": "1.8-21" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mgcv_1.8-22.tar.gz" ], "version": "1.8-22" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mgcv_1.8-27.tar.gz" ], "version": "1.8-27" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mgcv_1.8-28.tar.gz" ], "version": "1.8-28" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mgcv_1.8-33.tar.gz" ], "version": "1.8-33" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mgcv_1.8-38.tar.gz" ], "version": "1.8-38" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mgcv_1.8-40.tar.gz" ], "version": "1.8-40" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mgcv_1.8-41.tar.gz" ], "version": "1.8-41" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mgcv_1.8-42.tar.gz" ], "version": "1.8-42" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mgcv_1.9-1.tar.gz" ], "version": "1.9-1" } ] }, "r-mgraster": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/MGRASTer_0.9.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=MGRASTer" ], "licenses": [], "maintainers": [], "name": "r-mgraster", "patches": [], "summary": "API Client for the MG-RAST Server of the US DOE KBase. Convenience\nFunctions for R Language Access to the v.1 API of the MG-RAST Metagenome\nAnnotation Server, part of the US Department of Energy (DOE) Systems\nBiology Knowledge Base (KBase).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/MGRASTer_0.9.tar.gz" ], "version": "0.9" } ] }, "r-mice": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-broom", "r-cpp11", "r-dplyr", "r-generics", "r-glmnet", "r-lattice", "r-mass", "r-mitml", "r-nnet", "r-rcpp", "r-rlang", "r-rpart", "r-survival", "r-tidyr", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mice_3.16.0.tar.gz", "https://cloud.r-project.org/src/contrib/mice_3.15.0.tar.gz", "https://cloud.r-project.org/src/contrib/mice_3.14.0.tar.gz", "https://cloud.r-project.org/src/contrib/mice_3.12.0.tar.gz", "https://cloud.r-project.org/src/contrib/mice_3.6.0.tar.gz", "https://cloud.r-project.org/src/contrib/mice_3.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/mice_3.0.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mice" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-mice", "patches": [], "summary": "Multivariate Imputation by Chained Equations. Multiple imputation using\nFully Conditional Specification (FCS) implemented by the MICE algorithm\nas described in Van Buuren and Groothuis-Oudshoorn (2011)\n. Each variable has its own imputation model.\nBuilt-in imputation models are provided for continuous data (predictive\nmean matching, normal), binary data (logistic regression), unordered\ncategorical data (polytomous logistic regression) and ordered\ncategorical data (proportional odds). MICE can also impute continuous\ntwo-level data (normal model, pan, second-level variables). Passive\nimputation can be used to maintain consistency between variables.\nVarious diagnostic plots are available to inspect the quality of the\nimputations.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/mice_3.0.0.tar.gz" ], "version": "3.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mice_3.12.0.tar.gz" ], "version": "3.12.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mice_3.14.0.tar.gz" ], "version": "3.14.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mice_3.15.0.tar.gz" ], "version": "3.15.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mice_3.16.0.tar.gz" ], "version": "3.16.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mice_3.5.0.tar.gz" ], "version": "3.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mice_3.6.0.tar.gz" ], "version": "3.6.0" } ] }, "r-microbenchmark": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/microbenchmark_1.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/microbenchmark_1.4.10.tar.gz", "https://cloud.r-project.org/src/contrib/microbenchmark_1.4.9.tar.gz", "https://cloud.r-project.org/src/contrib/microbenchmark_1.4-7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=microbenchmark" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "r-microbenchmark", "patches": [], "summary": "Accurate Timing Functions. Provides infrastructure to accurately measure\nand compare the execution time of R expressions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/microbenchmark_1.4-7.tar.gz" ], "version": "1.4-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/microbenchmark_1.4.10.tar.gz" ], "version": "1.4.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/microbenchmark_1.4.9.tar.gz" ], "version": "1.4.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/microbenchmark_1.5.0.tar.gz" ], "version": "1.5.0" } ] }, "r-mime": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mime_0.12.tar.gz", "https://cloud.r-project.org/src/contrib/mime_0.11.tar.gz", "https://cloud.r-project.org/src/contrib/mime_0.9.tar.gz", "https://cloud.r-project.org/src/contrib/mime_0.7.tar.gz", "https://cloud.r-project.org/src/contrib/mime_0.6.tar.gz", "https://cloud.r-project.org/src/contrib/mime_0.5.tar.gz", "https://cloud.r-project.org/src/contrib/mime_0.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mime" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-mime", "patches": [], "summary": "Map Filenames to MIME Types. Guesses the MIME type from a filename\nextension using the data derived from /etc/mime.types in UNIX-type\nsystems.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/mime_0.11.tar.gz" ], "version": "0.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mime_0.12.tar.gz" ], "version": "0.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mime_0.4.tar.gz" ], "version": "0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mime_0.5.tar.gz" ], "version": "0.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mime_0.6.tar.gz" ], "version": "0.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mime_0.7.tar.gz" ], "version": "0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mime_0.9.tar.gz" ], "version": "0.9" } ] }, "r-minfi": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-beanplot", "r-biobase", "r-biocgenerics", "r-biocparallel", "r-biostrings", "r-bumphunter", "r-data-table", "r-delayedarray", "r-delayedmatrixstats", "r-genefilter", "r-genomeinfodb", "r-genomicranges", "r-geoquery", "r-hdf5array", "r-illuminaio", "r-iranges", "r-lattice", "r-limma", "r-mass", "r-matrixstats", "r-mclust", "r-nlme", "r-nor1mix", "r-preprocesscore", "r-quadprog", "r-rcolorbrewer", "r-reshape", "r-s4vectors", "r-siggenes", "r-summarizedexperiment" ], "downloads": [ "https://git.bioconductor.org/packages/minfi" ], "homepages": [ "https://bioconductor.org/packages/minfi" ], "licenses": [], "maintainers": [], "name": "r-minfi", "patches": [], "summary": "Analyze Illumina Infinium DNA methylation arrays. Tools to analyze &\nvisualize Illumina Infinium methylation arrays.\n", "version": [ { "repositories": [ { "commit": "b2faf84bcbb291e32d470a0e029450093527545b", "type": "git", "url": "https://git.bioconductor.org/packages/minfi" } ], "version": "1.22.1" }, { "repositories": [ { "commit": "a4df428588ea86a1c79ddba76132014f0a39644e", "type": "git", "url": "https://git.bioconductor.org/packages/minfi" } ], "version": "1.24.0" }, { "repositories": [ { "commit": "ebb07b728b2453998d46e4e53d4fbf873e8e81fc", "type": "git", "url": "https://git.bioconductor.org/packages/minfi" } ], "version": "1.26.2" }, { "repositories": [ { "commit": "b5125b2f3e05d37d519eeb6fd44a60efdad388e7", "type": "git", "url": "https://git.bioconductor.org/packages/minfi" } ], "version": "1.28.4" }, { "repositories": [ { "commit": "a4c28e9388fe3b35e7d21a9669e39250ed6dcbcd", "type": "git", "url": "https://git.bioconductor.org/packages/minfi" } ], "version": "1.30.0" }, { "repositories": [ { "commit": "94301da343226be7cd878c2a6c1bb529564785d6", "type": "git", "url": "https://git.bioconductor.org/packages/minfi" } ], "version": "1.36.0" }, { "repositories": [ { "commit": "17fa2b5d6cdbef6cbfb690242bd3f660731431f1", "type": "git", "url": "https://git.bioconductor.org/packages/minfi" } ], "version": "1.40.0" }, { "repositories": [ { "commit": "30fc7059460a9ec0be734fc26e608426ca9f5614", "type": "git", "url": "https://git.bioconductor.org/packages/minfi" } ], "version": "1.42.0" }, { "repositories": [ { "commit": "7c89fefc2e174d43ed9891b3f30b51ee19e916a6", "type": "git", "url": "https://git.bioconductor.org/packages/minfi" } ], "version": "1.44.0" }, { "repositories": [ { "commit": "1d063178fb27d577c260f8b7626b982c9a6585cc", "type": "git", "url": "https://git.bioconductor.org/packages/minfi" } ], "version": "1.46.0" } ] }, "r-miniui": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-htmltools", "r-shiny" ], "downloads": [ "https://cloud.r-project.org/src/contrib/miniUI_0.1.1.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=miniUI" ], "licenses": [], "maintainers": [], "name": "r-miniui", "patches": [], "summary": "Shiny UI Widgets for Small Screens. Provides UI widget and layout\nfunctions for writing Shiny apps that work well on small screens.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/miniUI_0.1.1.1.tar.gz" ], "version": "0.1.1.1" } ] }, "r-minqa": { "alias": [], "categories": [], "dependencies": [ "cxx", "fortran", "gmake", "r", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/minqa_1.2.8.tar.gz", "https://cloud.r-project.org/src/contrib/minqa_1.2.5.tar.gz", "https://cloud.r-project.org/src/contrib/minqa_1.2.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=minqa" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-minqa", "patches": [], "summary": "Derivative-free optimization algorithms by quadratic approximation.\nDerivative-free optimization by quadratic approximation based on an\ninterface to Fortran implementations by M. J. D. Powell.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/minqa_1.2.4.tar.gz" ], "version": "1.2.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/minqa_1.2.5.tar.gz" ], "version": "1.2.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/minqa_1.2.8.tar.gz" ], "version": "1.2.8" } ] }, "r-misc3d": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/misc3d_0.9-1.tar.gz", "https://cloud.r-project.org/src/contrib/misc3d_0.9-0.tar.gz", "https://cloud.r-project.org/src/contrib/misc3d_0.8-4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=misc3d" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-misc3d", "patches": [], "summary": "Miscellaneous 3D Plots. A collection of miscellaneous 3d plots,\nincluding isosurfaces.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/misc3d_0.8-4.tar.gz" ], "version": "0.8-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/misc3d_0.9-0.tar.gz" ], "version": "0.9-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/misc3d_0.9-1.tar.gz" ], "version": "0.9-1" } ] }, "r-missmethyl": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotationdbi", "r-biasedurn", "r-biobase", "r-biocgenerics", "r-genomicranges", "r-go-db", "r-illuminahumanmethylation450kanno-ilmn12-hg19", "r-illuminahumanmethylation450kmanifest", "r-illuminahumanmethylationepicanno-ilm10b4-hg19", "r-illuminahumanmethylationepicmanifest", "r-iranges", "r-limma", "r-methylumi", "r-minfi", "r-org-hs-eg-db", "r-ruv", "r-s4vectors", "r-statmod", "r-stringr", "r-summarizedexperiment" ], "downloads": [ "https://git.bioconductor.org/packages/missMethyl" ], "homepages": [ "https://bioconductor.org/packages/missMethyl" ], "licenses": [], "maintainers": [], "name": "r-missmethyl", "patches": [], "summary": "Analysing Illumina HumanMethylation BeadChip Data. Normalisation,\ntesting for differential variability and differential methylation and\ngene set testing for data from Illumina's Infinium HumanMethylation\narrays. The normalisation procedure is subset-quantile within-array\nnormalisation (SWAN), which allows Infinium I and II type probes on a\nsingle array to be normalised together. The test for differential\nvariability is based on an empirical Bayes version of Levene's test.\nDifferential methylation testing is performed using RUV, which can\nadjust for systematic errors of unknown origin in high-dimensional data\nby using negative control probes. Gene ontology analysis is performed by\ntaking into account the number of probes per gene on the array, as well\nas taking into account multi-gene associated probes.\n", "version": [ { "repositories": [ { "commit": "f6c86048911dc0e302fb593b7d0623f6e77ac332", "type": "git", "url": "https://git.bioconductor.org/packages/missMethyl" } ], "version": "1.24.0" }, { "repositories": [ { "commit": "6a36aee28837736291ac630c1da3909f0e9c8d6a", "type": "git", "url": "https://git.bioconductor.org/packages/missMethyl" } ], "version": "1.28.0" }, { "repositories": [ { "commit": "734846653f332f10e557b87aca4cb5d100b62469", "type": "git", "url": "https://git.bioconductor.org/packages/missMethyl" } ], "version": "1.30.0" }, { "repositories": [ { "commit": "969b892e400b9821398099bcea46f2d0431daedf", "type": "git", "url": "https://git.bioconductor.org/packages/missMethyl" } ], "version": "1.32.0" }, { "repositories": [ { "commit": "57db57c48ab79c36eb89726afc2833a981cbaf3d", "type": "git", "url": "https://git.bioconductor.org/packages/missMethyl" } ], "version": "1.34.0" } ] }, "r-mitml": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-haven", "r-jomo", "r-pan" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mitml_0.4-5.tar.gz", "https://cloud.r-project.org/src/contrib/mitml_0.4-3.tar.gz", "https://cloud.r-project.org/src/contrib/mitml_0.3-7.tar.gz", "https://cloud.r-project.org/src/contrib/mitml_0.3-6.tar.gz", "https://cloud.r-project.org/src/contrib/mitml_0.3-5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mitml" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-mitml", "patches": [], "summary": "Tools for Multiple Imputation in Multilevel Modeling. Provides tools for\nmultiple imputation of missing data in multilevel modeling. Includes a\nuser-friendly interface to the packages 'pan' and 'jomo', and several\nfunctions for visualization, data management and the analysis of\nmultiply imputed data sets.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/mitml_0.3-5.tar.gz" ], "version": "0.3-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mitml_0.3-6.tar.gz" ], "version": "0.3-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mitml_0.3-7.tar.gz" ], "version": "0.3-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mitml_0.4-3.tar.gz" ], "version": "0.4-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mitml_0.4-5.tar.gz" ], "version": "0.4-5" } ] }, "r-mitools": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-dbi" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mitools_2.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mitools" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-mitools", "patches": [], "summary": "Tools for Multiple Imputation of Missing Data. Tools to perform analyses\nand combine results from multiple-imputation datasets.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/mitools_2.4.tar.gz" ], "version": "2.4" } ] }, "r-mixtools": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-kernlab", "r-mass", "r-plotly", "r-scales", "r-segmented", "r-survival" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mixtools_2.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/mixtools_1.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/mixtools_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/mixtools_1.0.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mixtools" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-mixtools", "patches": [], "summary": "Tools for Analyzing Finite Mixture Models. Analyzes finite mixture\nmodels for various parametric and semiparametric settings. This includes\nmixtures of parametric distributions (normal, multivariate normal,\nmultinomial, gamma), various Reliability Mixture Models (RMMs),\nmixtures-of-regressions settings (linear regression, logistic\nregression, Poisson regression, linear regression with changepoints,\npredictor-dependent mixing proportions, random effects regressions,\nhierarchical mixtures-of-experts), and tools for selecting the number of\ncomponents (bootstrapping the likelihood ratio test statistic,\nmixturegrams, and model selection criteria). Bayesian estimation of\nmixtures-of-linear-regressions models is available as well as a novel\ndata depth method for obtaining credible bands. This package is based\nupon work supported by the National Science Foundation under Grant No.\nSES-0518772.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/mixtools_1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mixtools_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mixtools_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mixtools_2.0.0.tar.gz" ], "version": "2.0.0" } ] }, "r-mlbench": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mlbench_2.1-5.tar.gz", "https://cloud.r-project.org/src/contrib/mlbench_2.1-3.tar.gz", "https://cloud.r-project.org/src/contrib/mlbench_2.1-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mlbench" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-mlbench", "patches": [], "summary": "Machine Learning Benchmark Problems. A collection of artificial and\nreal-world machine learning benchmark problems, including, e.g., several\ndata sets from the UCI repository.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/mlbench_2.1-1.tar.gz" ], "version": "2.1-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mlbench_2.1-3.tar.gz" ], "version": "2.1-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mlbench_2.1-5.tar.gz" ], "version": "2.1-5" } ] }, "r-mlinterfaces": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotate", "r-biobase", "r-biocgenerics", "r-cluster", "r-fpc", "r-gbm", "r-gdata", "r-genefilter", "r-ggvis", "r-hwriter", "r-magrittr", "r-mass", "r-mlbench", "r-pls", "r-rcolorbrewer", "r-rcpp", "r-rda", "r-rpart", "r-sfsmisc", "r-shiny", "r-summarizedexperiment", "r-threejs" ], "downloads": [ "https://git.bioconductor.org/packages/MLInterfaces" ], "homepages": [ "https://bioconductor.org/packages/MLInterfaces" ], "licenses": [], "maintainers": [], "name": "r-mlinterfaces", "patches": [], "summary": "Uniform interfaces to R machine learning procedures for data in\nBioconductor containers. This package provides uniform interfaces to\nmachine learning code for data in R and Bioconductor containers.\n", "version": [ { "repositories": [ { "commit": "31fe6fb20d859fcb01d5552f42bca6bab16cc67f", "type": "git", "url": "https://git.bioconductor.org/packages/MLInterfaces" } ], "version": "1.56.0" }, { "repositories": [ { "commit": "4e2b5efa019fcb677dc82a58a1668c8a00cdfe07", "type": "git", "url": "https://git.bioconductor.org/packages/MLInterfaces" } ], "version": "1.58.1" }, { "repositories": [ { "commit": "019e9ed44923e5d845a4800246aa044ddd59d548", "type": "git", "url": "https://git.bioconductor.org/packages/MLInterfaces" } ], "version": "1.60.1" }, { "repositories": [ { "commit": "6cf59a90b14779cf57a0b36f1087304082ae50fe", "type": "git", "url": "https://git.bioconductor.org/packages/MLInterfaces" } ], "version": "1.62.1" }, { "repositories": [ { "commit": "0b081112d87771248bc33b3b82d5ca4685f986a1", "type": "git", "url": "https://git.bioconductor.org/packages/MLInterfaces" } ], "version": "1.64.1" }, { "repositories": [ { "commit": "7b076c3e85314dd5fd5bd8a98e8123d08d9acd3b", "type": "git", "url": "https://git.bioconductor.org/packages/MLInterfaces" } ], "version": "1.70.0" }, { "repositories": [ { "commit": "5ee73b6491b1d68d7b49ddce6483df98ad880946", "type": "git", "url": "https://git.bioconductor.org/packages/MLInterfaces" } ], "version": "1.74.0" }, { "repositories": [ { "commit": "935323d8ce1e4bbf41844a1f9b6c946c5a30c673", "type": "git", "url": "https://git.bioconductor.org/packages/MLInterfaces" } ], "version": "1.76.0" }, { "repositories": [ { "commit": "0988b95d282a6bffe56b7df4da2e23485e96d12c", "type": "git", "url": "https://git.bioconductor.org/packages/MLInterfaces" } ], "version": "1.78.0" }, { "repositories": [ { "commit": "275f8d39f05c46ab3ab7096d1e0539a33bab3a54", "type": "git", "url": "https://git.bioconductor.org/packages/MLInterfaces" } ], "version": "1.80.0" } ] }, "r-mlr": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-backports", "r-bbmisc", "r-checkmate", "r-data-table", "r-ggplot2", "r-parallelmap", "r-paramhelpers", "r-stringi", "r-survival", "r-xml" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mlr_2.19.2.tar.gz", "https://cloud.r-project.org/src/contrib/mlr_2.19.1.tar.gz", "https://cloud.r-project.org/src/contrib/mlr_2.19.0.tar.gz", "https://cloud.r-project.org/src/contrib/mlr_2.18.0.tar.gz", "https://cloud.r-project.org/src/contrib/mlr_2.15.0.tar.gz", "https://cloud.r-project.org/src/contrib/mlr_2.14.0.tar.gz", "https://cloud.r-project.org/src/contrib/mlr_2.13.tar.gz", "https://cloud.r-project.org/src/contrib/mlr_2.12.1.tar.gz", "https://cloud.r-project.org/src/contrib/mlr_2.12.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mlr" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "r-mlr", "patches": [], "summary": "Machine Learning in R. Interface to a large number of classification and\nregression techniques, including machine-readable parameter\ndescriptions. There is also an experimental extension for survival\nanalysis, clustering and general, example-specific cost-sensitive\nlearning. Generic resampling, including cross-validation, bootstrapping\nand subsampling. Hyperparameter tuning with modern optimization\ntechniques, for single- and multi-objective problems. Filter and wrapper\nmethods for feature selection. Extension of basic learners with\nadditional operations common in machine learning, also allowing for easy\nnested resampling. Most operations can be parallelized.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/mlr_2.12.tar.gz" ], "version": "2.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mlr_2.12.1.tar.gz" ], "version": "2.12.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mlr_2.13.tar.gz" ], "version": "2.13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mlr_2.14.0.tar.gz" ], "version": "2.14.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mlr_2.15.0.tar.gz" ], "version": "2.15.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mlr_2.18.0.tar.gz" ], "version": "2.18.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mlr_2.19.0.tar.gz" ], "version": "2.19.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mlr_2.19.1.tar.gz" ], "version": "2.19.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mlr_2.19.2.tar.gz" ], "version": "2.19.2" } ] }, "r-mlrmbo": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-backports", "r-bbmisc", "r-checkmate", "r-data-table", "r-lhs", "r-mlr", "r-parallelmap", "r-paramhelpers", "r-smoof" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mlrMBO_1.1.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/mlrMBO_1.1.5.tar.gz", "https://cloud.r-project.org/src/contrib/mlrMBO_1.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/mlrMBO_1.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/mlrMBO_1.1.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mlrMBO" ], "licenses": [], "maintainers": [], "name": "r-mlrmbo", "patches": [], "summary": "Bayesian Optimization and Model-Based Optimization of Expensive Black-\nBox Functions. Flexible and comprehensive R toolbox for model-based\noptimization ('MBO'), also known as Bayesian optimization. It is\ndesigned for both single- and multi-objective optimization with mixed\ncontinuous, categorical and conditional parameters. The machine learning\ntoolbox 'mlr' provide dozens of regression learners to model the\nperformance of the target algorithm with respect to the parameter\nsettings. It provides many different infill criteria to guide the search\nprocess. Additional features include multi-point batch proposal,\nparallel execution as well as visualization and sophisticated logging\nmechanisms, which is especially useful for teaching and understanding of\nalgorithm behavior. 'mlrMBO' is implemented in a modular fashion, such\nthat single components can be easily replaced or adapted by the user for\nspecific use cases.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/mlrMBO_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mlrMBO_1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mlrMBO_1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mlrMBO_1.1.5.tar.gz" ], "version": "1.1.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mlrMBO_1.1.5.1.tar.gz" ], "version": "1.1.5.1" } ] }, "r-mmwrweek": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/MMWRweek_0.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/MMWRweek_0.1.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=MMWRweek" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-mmwrweek", "patches": [], "summary": "Convert Dates to MMWR Day, Week, and Year. The first day of any MMWR\nweek is Sunday. MMWR week numbering is sequential beginning with 1 and\nincrementing with each week to a maximum of 52 or 53. MMWR week #1 of an\nMMWR year is the first week of the year that has at least four days in\nthe calendar year. This package provides functionality to convert Dates\nto MMWR day, week, and year and the reverse.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/MMWRweek_0.1.1.tar.gz" ], "version": "0.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/MMWRweek_0.1.3.tar.gz" ], "version": "0.1.3" } ] }, "r-mnormt": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-tmvnsim" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mnormt_2.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/mnormt_2.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/mnormt_1.5-5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mnormt" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-mnormt", "patches": [], "summary": "The Multivariate Normal and t Distributions, and Their Truncated\nVersions. Functions are provided for computing the density and the\ndistribution function of multivariate normal and \"t\" random variables,\nand for generating random vectors sampled from these distributions.\nProbabilities are computed via non-Monte Carlo methods; different\nroutines are used in the case d=1, d=2, d>2, if d denotes the number of\ndimensions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/mnormt_1.5-5.tar.gz" ], "version": "1.5-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mnormt_2.0.2.tar.gz" ], "version": "2.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mnormt_2.1.1.tar.gz" ], "version": "2.1.1" } ] }, "r-mockery": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-testthat" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mockery_0.4.4.tar.gz", "https://cloud.r-project.org/src/contrib/mockery_0.4.3.tar.gz", "https://cloud.r-project.org/src/contrib/mockery_0.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/mockery_0.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/mockery_0.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/mockery_0.3.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mockery" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-mockery", "patches": [], "summary": "Mocking Library for R. The two main functionalities of this package are\ncreating mock objects (functions) and selectively intercepting calls to\na given function that originate in some other function. It can be used\nwith any testing framework available for R. Mock objects can be injected\nwith either this package's own stub() function or a similar with_mock()\nfacility present in the 'testthat' package.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/mockery_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mockery_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mockery_0.4.1.tar.gz" ], "version": "0.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mockery_0.4.2.tar.gz" ], "version": "0.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mockery_0.4.3.tar.gz" ], "version": "0.4.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mockery_0.4.4.tar.gz" ], "version": "0.4.4" } ] }, "r-modelmetrics": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-data-table", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ModelMetrics_1.2.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/ModelMetrics_1.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/ModelMetrics_1.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/ModelMetrics_1.1.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ModelMetrics" ], "licenses": [], "maintainers": [], "name": "r-modelmetrics", "patches": [], "summary": "Rapid Calculation of Model Metrics. Collection of metrics for evaluating\nmodels written in C++ using 'Rcpp'. Popular metrics include area under\nthe curve, log loss, root mean square error, etc.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ModelMetrics_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ModelMetrics_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ModelMetrics_1.2.2.tar.gz" ], "version": "1.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ModelMetrics_1.2.2.2.tar.gz" ], "version": "1.2.2.2" } ] }, "r-modelr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-broom", "r-dplyr", "r-lazyeval", "r-magrittr", "r-purrr", "r-rlang", "r-tibble", "r-tidyr", "r-tidyselect", "r-vctrs" ], "downloads": [ "https://cloud.r-project.org/src/contrib/modelr_0.1.11.tar.gz", "https://cloud.r-project.org/src/contrib/modelr_0.1.9.tar.gz", "https://cloud.r-project.org/src/contrib/modelr_0.1.8.tar.gz", "https://cloud.r-project.org/src/contrib/modelr_0.1.5.tar.gz", "https://cloud.r-project.org/src/contrib/modelr_0.1.4.tar.gz", "https://cloud.r-project.org/src/contrib/modelr_0.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/modelr_0.1.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=modelr" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-modelr", "patches": [], "summary": "Modelling Functions that Work with the Pipe. Functions for modelling\nthat help you seamlessly integrate modelling into a pipeline of data\nmanipulation and visualisation.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/modelr_0.1.1.tar.gz" ], "version": "0.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/modelr_0.1.11.tar.gz" ], "version": "0.1.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/modelr_0.1.3.tar.gz" ], "version": "0.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/modelr_0.1.4.tar.gz" ], "version": "0.1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/modelr_0.1.5.tar.gz" ], "version": "0.1.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/modelr_0.1.8.tar.gz" ], "version": "0.1.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/modelr_0.1.9.tar.gz" ], "version": "0.1.9" } ] }, "r-modeltools": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/modeltools_0.2-23.tar.gz", "https://cloud.r-project.org/src/contrib/modeltools_0.2-22.tar.gz", "https://cloud.r-project.org/src/contrib/modeltools_0.2-21.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=modeltools" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-modeltools", "patches": [], "summary": "Tools and Classes for Statistical Models. A collection of tools to deal\nwith statistical models. The functionality is experimental and the user\ninterface is likely to change in the future. The documentation is rather\nterse, but packages `coin' and `party' have some working examples.\nHowever, if you find the implemented ideas interesting we would be very\ninterested in a discussion of this proposal. Contributions are more than\nwelcome!\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/modeltools_0.2-21.tar.gz" ], "version": "0.2-21" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/modeltools_0.2-22.tar.gz" ], "version": "0.2-22" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/modeltools_0.2-23.tar.gz" ], "version": "0.2-23" } ] }, "r-mpm": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-kernsmooth", "r-mass" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mpm_1.0-23.tar.gz", "https://cloud.r-project.org/src/contrib/mpm_1.0-22.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mpm" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-mpm", "patches": [], "summary": "Multivariate Projection Methods. Exploratory graphical analysis of\nmultivariate data, specifically gene expression data with different\nprojection methods: principal component analysis, correspondence\nanalysis, spectral map analysis.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/mpm_1.0-22.tar.gz" ], "version": "1.0-22" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/mpm_1.0-23.tar.gz" ], "version": "1.0-23" } ] }, "r-mr-raps": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-nortest" ], "downloads": [ "https://cloud.r-project.org/src/contrib/mr.raps_0.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=mr.raps" ], "licenses": [], "maintainers": [], "name": "r-mr-raps", "patches": [], "summary": "Two Sample Mendelian Randomization using Robust Adjusted Profile Score.\nMendelian randomization is a method of identifying and estimating a\nconfounded causal effect using genetic instrumental variables. This\npackages implements methods for two-sample Mendelian randomization with\nsummary statistics by using Robust Adjusted Profile Score (RAPS).\nReferences: Qingyuan Zhao, Jingshu Wang, Jack Bowden, Dylan S. Small.\nStatistical inference in two-sample summary-data Mendelian randomization\nusing robust adjusted profile score. .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/mr.raps_0.2.tar.gz" ], "version": "0.2" } ] }, "r-mrinstruments": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://github.com/MRCIEU/MRInstruments/archive/refs/tags/0.3.3.tar.gz", null ], "homepages": [ "https://github.com/MRCIEU/MRInstruments" ], "licenses": [], "maintainers": [], "name": "r-mrinstruments", "patches": [], "summary": "Data sources for genetic instruments to be used in MR. Datasets of\neQTLs, GWAS catalogs, etc.\n", "version": [ { "downloads": [ "https://github.com/MRCIEU/MRInstruments/archive/refs/tags/0.3.3.tar.gz" ], "version": "0.3.3" } ] }, "r-mrmix": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://github.com/gqi/MRMix" ], "homepages": [ "https://github.com/gqi/MRMix" ], "licenses": [], "maintainers": [], "name": "r-mrmix", "patches": [], "summary": "Mendelian Randomization Analysis Using Mixture Models (MRMix). This\npackage gives robust estimation of causal effects by conducting\nMendelian randomization analysis using a mixture model approach.\n", "version": [ { "repositories": [ { "commit": "56afdb2bc96760842405396f5d3f02e60e305039", "type": "git", "url": "https://github.com/gqi/MRMix" } ], "version": "0.1.0" } ] }, "r-mrpresso": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://github.com/rondolab/MR-PRESSO" ], "homepages": [ "https://github.com/rondolab/MR-PRESSO" ], "licenses": [], "maintainers": [], "name": "r-mrpresso", "patches": [], "summary": "Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier\n(MR-PRESSO) test. MR-PRESSO (Mendelian Randomization Pleiotropy RESidual\nSum and Outlier) is a framework that allows for the evaluation of\npleiotropy in multi-instrument Mendelian Randomization utilizing genome-\nwide summary association statistics.\n", "version": [ { "repositories": [ { "commit": "cece763b47e59763a7916974de43c7cb93843e41", "type": "git", "url": "https://github.com/rondolab/MR-PRESSO" } ], "version": "1.0" } ] }, "r-mscoreutils": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-clue", "r-mass", "r-rcpp", "r-s4vectors" ], "downloads": [ "https://git.bioconductor.org/packages/MsCoreUtils" ], "homepages": [ "https://bioconductor.org/packages/MsCoreUtils" ], "licenses": [], "maintainers": [], "name": "r-mscoreutils", "patches": [], "summary": "Core Utils for Mass Spectrometry Data. MsCoreUtils defines low-level\nfunctions for mass spectrometry data and is independent of any high-\nlevel data structures. These functions include mass spectra processing\nfunctions (noise estimation, smoothing, binning), quantitative\naggregation functions (median polish, robust summarisation, ...),\nmissing data imputation, data normalisation (quantiles, vsn, ...) as\nwell as misc helper functions, that are used across high-level data\nstructure within the R for Mass Spectrometry packages.\n", "version": [ { "repositories": [ { "commit": "742c0c7143b1c32f75cc96b555e9f8cd265096c9", "type": "git", "url": "https://git.bioconductor.org/packages/MsCoreUtils" } ], "version": "1.10.0" }, { "repositories": [ { "commit": "14a3fdb2fecca41ef0acb67bc8356227a1491c56", "type": "git", "url": "https://git.bioconductor.org/packages/MsCoreUtils" } ], "version": "1.12.0" }, { "repositories": [ { "commit": "9ed95b2d20dacaa83567fadd04349c81db9127ef", "type": "git", "url": "https://git.bioconductor.org/packages/MsCoreUtils" } ], "version": "1.6.0" }, { "repositories": [ { "commit": "8b7e2c31009276aad0b418ba5cdfc94d03e1973e", "type": "git", "url": "https://git.bioconductor.org/packages/MsCoreUtils" } ], "version": "1.8.0" } ] }, "r-msnbase": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-affy", "r-biobase", "r-biocgenerics", "r-biocparallel", "r-digest", "r-ggplot2", "r-impute", "r-iranges", "r-lattice", "r-maldiquant", "r-mass", "r-mscoreutils", "r-mzid", "r-mzr", "r-pcamethods", "r-plyr", "r-preprocesscore", "r-protgenerics", "r-rcpp", "r-s4vectors", "r-scales", "r-vsn", "r-xml" ], "downloads": [ "https://git.bioconductor.org/packages/MSnbase" ], "homepages": [ "https://bioconductor.org/packages/MSnbase" ], "licenses": [], "maintainers": [], "name": "r-msnbase", "patches": [], "summary": "Base Functions and Classes for Mass Spectrometry and Proteomics. MSnbase\nprovides infrastructure for manipulation, processing and visualisation\nof mass spectrometry and proteomics data, ranging from raw to\nquantitative and annotated data.\n", "version": [ { "repositories": [ { "commit": "4d5899bc9c714f0b1a70cddd537cd4621b2b53b0", "type": "git", "url": "https://git.bioconductor.org/packages/MSnbase" } ], "version": "2.10.1" }, { "repositories": [ { "commit": "4d88b4edd1af59474462b1b06ad0ec5831f3a878", "type": "git", "url": "https://git.bioconductor.org/packages/MSnbase" } ], "version": "2.16.1" }, { "repositories": [ { "commit": "d6e8fb7f106d05096fa9074da0f829ac8f02c197", "type": "git", "url": "https://git.bioconductor.org/packages/MSnbase" } ], "version": "2.2.0" }, { "repositories": [ { "commit": "c86ac8b341832f2b577f2153258c1abf064e6448", "type": "git", "url": "https://git.bioconductor.org/packages/MSnbase" } ], "version": "2.20.4" }, { "repositories": [ { "commit": "4f6e5767eee91b2105781b494fcabcfed16eba2d", "type": "git", "url": "https://git.bioconductor.org/packages/MSnbase" } ], "version": "2.22.0" }, { "repositories": [ { "commit": "b96e0142c663c2cb01e92479816a503c46caa1a8", "type": "git", "url": "https://git.bioconductor.org/packages/MSnbase" } ], "version": "2.24.0" }, { "repositories": [ { "commit": "3e6268a86b93c474e37b21a9b8f564812202b2b6", "type": "git", "url": "https://git.bioconductor.org/packages/MSnbase" } ], "version": "2.26.0" }, { "repositories": [ { "commit": "c045d65daa730c7837852e6343a05cae9644ab5e", "type": "git", "url": "https://git.bioconductor.org/packages/MSnbase" } ], "version": "2.4.2" }, { "repositories": [ { "commit": "46836860ce0281eef135303f2e2948303d67f68c", "type": "git", "url": "https://git.bioconductor.org/packages/MSnbase" } ], "version": "2.6.4" }, { "repositories": [ { "commit": "ef883752c5e92d445647bc5b5d23d5df320db415", "type": "git", "url": "https://git.bioconductor.org/packages/MSnbase" } ], "version": "2.8.3" } ] }, "r-multcomp": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-codetools", "r-mvtnorm", "r-sandwich", "r-survival", "r-th-data" ], "downloads": [ "https://cloud.r-project.org/src/contrib/multcomp_1.4-26.tar.gz", "https://cloud.r-project.org/src/contrib/multcomp_1.4-23.tar.gz", "https://cloud.r-project.org/src/contrib/multcomp_1.4-20.tar.gz", "https://cloud.r-project.org/src/contrib/multcomp_1.4-19.tar.gz", "https://cloud.r-project.org/src/contrib/multcomp_1.4-18.tar.gz", "https://cloud.r-project.org/src/contrib/multcomp_1.4-15.tar.gz", "https://cloud.r-project.org/src/contrib/multcomp_1.4-10.tar.gz", "https://cloud.r-project.org/src/contrib/multcomp_1.4-8.tar.gz", "https://cloud.r-project.org/src/contrib/multcomp_1.4-6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=multcomp" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-multcomp", "patches": [], "summary": "Simultaneous Inference in General Parametric Models. Simultaneous tests\nand confidence intervals for general linear hypotheses in parametric\nmodels, including linear, generalized linear, linear mixed effects, and\nsurvival models. The package includes demos reproducing analyzes\npresented in the book \"Multiple Comparisons Using R\" (Bretz, Hothorn,\nWestfall, 2010, CRC Press).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/multcomp_1.4-10.tar.gz" ], "version": "1.4-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/multcomp_1.4-15.tar.gz" ], "version": "1.4-15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/multcomp_1.4-18.tar.gz" ], "version": "1.4-18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/multcomp_1.4-19.tar.gz" ], "version": "1.4-19" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/multcomp_1.4-20.tar.gz" ], "version": "1.4-20" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/multcomp_1.4-23.tar.gz" ], "version": "1.4-23" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/multcomp_1.4-26.tar.gz" ], "version": "1.4-26" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/multcomp_1.4-6.tar.gz" ], "version": "1.4-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/multcomp_1.4-8.tar.gz" ], "version": "1.4-8" } ] }, "r-multcompview": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/multcompView_0.1-10.tar.gz", "https://cloud.r-project.org/src/contrib/multcompView_0.1-9.tar.gz", "https://cloud.r-project.org/src/contrib/multcompView_0.1-8.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=multcompView" ], "licenses": [], "maintainers": [], "name": "r-multcompview", "patches": [], "summary": "Visualizations of Paired Comparisons. Convert a logical vector or a\nvector of p-values or a correlation, difference, or distance matrix into\na display identifying the pairs for which the differences were not\nsignificantly different. Designed for use in conjunction with the output\nof functions like TukeyHSD, dist{stats}, simint, simtest, csimint,\ncsimtest{multcomp}, friedmanmc, kruskalmc{pgirmess}.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/multcompView_0.1-10.tar.gz" ], "version": "0.1-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/multcompView_0.1-8.tar.gz" ], "version": "0.1-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/multcompView_0.1-9.tar.gz" ], "version": "0.1-9" } ] }, "r-multicool": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/multicool_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/multicool_0.1-12.tar.gz", "https://cloud.r-project.org/src/contrib/multicool_0.1-11.tar.gz", "https://cloud.r-project.org/src/contrib/multicool_0.1-10.tar.gz", "https://cloud.r-project.org/src/contrib/multicool_0.1-9.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=multicool" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-multicool", "patches": [], "summary": "Permutations of multisets in cool-lex order. A set of tools to permute\nmultisets without loops or hash tables and to generate integer\npartitions. The permutation functions are based on C code from Aaron\nWilliams. Cool-lex order is similar to colexicographical order. The\nalgorithm is described in Williams, A. (2009)\n Loopless Generation of Multiset\nPermutations by Prefix Shifts. Symposium on Discrete Algorithms, New\nYork, United States. The permutation code is distributed without\nrestrictions. The code for stable and efficient computation of\nmultinomial coefficients comes from Dave Barber. The code can be\ndownload from and is\ndistributed without conditions. The package also generates the integer\npartitions of a positive, non-zero integer n. The C++ code for this is\nbased on Python code from Jerome Kelleher which can be found here\n. The C++ code\nand Python code are distributed without conditions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/multicool_0.1-10.tar.gz" ], "version": "0.1-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/multicool_0.1-11.tar.gz" ], "version": "0.1-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/multicool_0.1-12.tar.gz" ], "version": "0.1-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/multicool_0.1-9.tar.gz" ], "version": "0.1-9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/multicool_1.0.1.tar.gz" ], "version": "1.0.1" } ] }, "r-multitaper": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/multitaper_1.0-17.tar.gz", "https://cloud.r-project.org/src/contrib/multitaper_1.0-15.tar.gz", "https://cloud.r-project.org/src/contrib/multitaper_1.0-14.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=multitaper" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-multitaper", "patches": [], "summary": "Spectral Analysis Tools using the Multitaper Method. Implements\nmultitaper spectral analysis using discrete prolate spheroidal sequences\n(Slepians) and sine tapers. It includes an adaptive weighted multitaper\nspectral estimate, a coherence estimate, Thomson's Harmonic F-test, and\ncomplex demodulation. The Slepians sequences are generated efficiently\nusing a tridiagonal matrix solution, and jackknifed confidence intervals\nare available for most estimates. This package is an implementation of\nthe method described in D.J. Thomson (1982) \"Spectrum estimation and\nharmonic analysis\" .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/multitaper_1.0-14.tar.gz" ], "version": "1.0-14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/multitaper_1.0-15.tar.gz" ], "version": "1.0-15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/multitaper_1.0-17.tar.gz" ], "version": "1.0-17" } ] }, "r-multtest": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-biobase", "r-biocgenerics", "r-mass", "r-survival" ], "downloads": [ "https://git.bioconductor.org/packages/multtest" ], "homepages": [ "https://bioconductor.org/packages/multtest" ], "licenses": [], "maintainers": [], "name": "r-multtest", "patches": [], "summary": "Resampling-based multiple hypothesis testing. Non-parametric bootstrap\nand permutation resampling-based multiple testing procedures (including\nempirical Bayes methods) for controlling the family-wise error rate\n(FWER), generalized family-wise error rate (gFWER), tail probability of\nthe proportion of false positives (TPPFP), and false discovery rate\n(FDR). Several choices of bootstrap-based null distribution are\nimplemented (centered, centered and scaled, quantile- transformed).\nSingle-step and step-wise methods are available. Tests based on a\nvariety of t- and F-statistics (including t-statistics based on\nregression parameters from linear and survival models as well as those\nbased on correlation parameters) are included. When probing hypotheses\nwith t-statistics, users may also select a potentially faster null\ndistribution which is multivariate normal with mean zero and variance\ncovariance matrix derived from the vector influence function. Results\nare reported in terms of adjusted p-values, confidence regions and test\nstatistic cutoffs. 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Please contact the maintainer with\nany problems and supply an mzIdentML file so the problems can be fixed\nquickly.\n", "version": [ { "repositories": [ { "commit": "1c53aa6523ae61d3ebb13381381fc119d6cc6115", "type": "git", "url": "https://git.bioconductor.org/packages/mzID" } ], "version": "1.14.0" }, { "repositories": [ { "commit": "fc203832a4cbbbe20f6dd826c6bf2128f2c271c4", "type": "git", "url": "https://git.bioconductor.org/packages/mzID" } ], "version": "1.16.0" }, { "repositories": [ { "commit": "7d8924ae95585eb8cf472d21619a7603d291d652", "type": "git", "url": "https://git.bioconductor.org/packages/mzID" } ], "version": "1.18.0" }, { "repositories": [ { "commit": "819582646944440ddd9ed3724ae964841573e54c", "type": "git", "url": "https://git.bioconductor.org/packages/mzID" } ], "version": "1.20.1" }, { "repositories": [ { "commit": "382d9cf11f0cba996911a9d79e193d28f3ac6042", "type": "git", "url": "https://git.bioconductor.org/packages/mzID" } ], "version": "1.22.0" }, { "repositories": [ { "commit": "cd006631c8222ce5b4af0577a7401b39cc58fd9c", "type": "git", "url": "https://git.bioconductor.org/packages/mzID" } ], "version": "1.28.0" }, { "repositories": [ { "commit": "d4146385b54f4d8361e23fc2c2aef79e952f4730", "type": "git", "url": "https://git.bioconductor.org/packages/mzID" } ], "version": "1.32.0" }, { "repositories": [ { "commit": "bef64db159a0a4d241ba2ba271f70266c1522b2b", "type": "git", "url": "https://git.bioconductor.org/packages/mzID" } ], "version": "1.34.0" }, { "repositories": [ { "commit": "d6525edce3389fd4a05ff5fd42e9d611f00a545d", "type": "git", "url": "https://git.bioconductor.org/packages/mzID" } ], "version": "1.36.0" }, { "repositories": [ { "commit": "d87d8b83d27876d3c12cd437499b87a5856f397d", "type": "git", "url": "https://git.bioconductor.org/packages/mzID" } ], "version": "1.38.0" } ] }, "r-mzr": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-biobase", "r-biocgenerics", "r-ncdf4", "r-protgenerics", "r-rcpp", "r-rhdf5lib", "r-zlibbioc", "zlib-api" ], "downloads": [ "https://git.bioconductor.org/packages/mzR" ], "homepages": [ "https://bioconductor.org/packages/mzR" ], "licenses": [], "maintainers": [], "name": "r-mzr", "patches": [], "summary": "parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass\nspectrometry data). mzR provides a unified API to the common file\nformats and parsers available for mass spectrometry data. It comes with\na wrapper for the ISB random access parser for mass spectrometry mzXML,\nmzData and mzML files. The package contains the original code written by\nthe ISB, and a subset of the proteowizard library for mzML and\nmzIdentML. The netCDF reading code has previously been used in XCMS.\n", "version": [ { "repositories": [ { "commit": "a6168b68e48c281e88de9647254a8db1e21df388", "type": "git", "url": "https://git.bioconductor.org/packages/mzR" } ], "version": "2.10.0" }, { "repositories": [ { "commit": "f05eb27ae31c3d019cca10fc3b9ee513cbcdfc5a", "type": "git", "url": "https://git.bioconductor.org/packages/mzR" } ], "version": "2.12.0" }, { "repositories": [ { "commit": "bf1154bc45101d95b5a67c66980856a779b84bd4", "type": "git", "url": "https://git.bioconductor.org/packages/mzR" } ], "version": "2.14.0" }, { "repositories": [ { "commit": "22d7dad98f46b5bed7f6f7b3a703dcdf5997f709", "type": "git", "url": "https://git.bioconductor.org/packages/mzR" } ], "version": "2.16.2" }, { "repositories": [ { "commit": "13f9f9b1149859c3e29cfce941d958cc4f680546", "type": "git", "url": "https://git.bioconductor.org/packages/mzR" } ], "version": "2.18.1" }, { "repositories": [ { "commit": "e1d4de8761e6729fd45320d842691c8fe9116b7b", "type": "git", "url": "https://git.bioconductor.org/packages/mzR" } ], "version": "2.24.1" }, { "repositories": [ { "commit": "bee7d6fb5f99e1fab5444ae1ad27b0bc6e83be9e", "type": "git", "url": "https://git.bioconductor.org/packages/mzR" } ], "version": "2.28.0" }, { "repositories": [ { "commit": "563ae755cfc7de1ac8862247779182b7b3aebdcc", "type": "git", "url": "https://git.bioconductor.org/packages/mzR" } ], "version": "2.30.0" }, { "repositories": [ { "commit": "ef57d59205398558898a748ba9c8de66b0bddb81", "type": "git", "url": "https://git.bioconductor.org/packages/mzR" } ], "version": "2.32.0" }, { "repositories": [ { "commit": "14ccc37ab3efd4b6003442a0268668258ccb7df9", "type": "git", "url": "https://git.bioconductor.org/packages/mzR" } ], "version": "2.34.0" } ] }, "r-nada": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-survival" ], "downloads": [ "https://cloud.r-project.org/src/contrib/NADA_1.6-1.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=NADA" ], "licenses": [], "maintainers": [], "name": "r-nada", "patches": [], "summary": "Nondetects and Data Analysis for Environmental Data. Contains methods\ndescribed by Dennis Helsel in his book \"Nondetects And Data Analysis:\nStatistics for Censored Environmental Data\".\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/NADA_1.6-1.1.tar.gz" ], "version": "1.6-1.1" } ] }, "r-nanotime": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-bit64", "r-rcpp", "r-rcppcctz", "r-rcppdate", "r-zoo" ], "downloads": [ "https://cloud.r-project.org/src/contrib/nanotime_0.3.9.tar.gz", "https://cloud.r-project.org/src/contrib/nanotime_0.3.7.tar.gz", "https://cloud.r-project.org/src/contrib/nanotime_0.3.6.tar.gz", "https://cloud.r-project.org/src/contrib/nanotime_0.3.5.tar.gz", "https://cloud.r-project.org/src/contrib/nanotime_0.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/nanotime_0.2.4.tar.gz", "https://cloud.r-project.org/src/contrib/nanotime_0.2.3.tar.gz", "https://cloud.r-project.org/src/contrib/nanotime_0.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=nanotime" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-nanotime", "patches": [], "summary": "Nanosecond-Resolution Time Support for R. Full 64-bit resolution date\nand time functionality with; nanosecond granularity is provided, with\neasy transition to and from; the standard 'POSIXct' type. 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Making NCBI taxonomic data\nlocally available and searchable as an R object.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ncbit_2013.03.29.tar.gz" ], "version": "2013.03.29" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ncbit_2013.03.29.1.tar.gz" ], "version": "2013.03.29.1" } ] }, "r-ncdf4": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "netcdf-c", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ncdf4_1.23.tar.gz", "https://cloud.r-project.org/src/contrib/ncdf4_1.21.tar.gz", "https://cloud.r-project.org/src/contrib/ncdf4_1.19.tar.gz", "https://cloud.r-project.org/src/contrib/ncdf4_1.17.tar.gz", "https://cloud.r-project.org/src/contrib/ncdf4_1.16.1.tar.gz", "https://cloud.r-project.org/src/contrib/ncdf4_1.16.tar.gz", "https://cloud.r-project.org/src/contrib/ncdf4_1.15.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ncdf4" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-ncdf4", "patches": [], "summary": "Interface to Unidata netCDF (Version 4 or Earlier) Format Data Files.\nProvides a high-level R interface to data files written using Unidata's\nnetCDF library (version 4 or earlier), which are binary data files that\nare portable across platforms and include metadata information in\naddition to the data sets. Using this package, netCDF files (either\nversion 4 or \"classic\" version 3) can be opened and data sets read in\neasily. It is also easy to create new netCDF dimensions, variables, and\nfiles, in either version 3 or 4 format, and manipulate existing netCDF\nfiles. This package replaces the former ncdf package, which only worked\nwith netcdf version 3 files. For various reasons the names of the\nfunctions have had to be changed from the names in the ncdf package. The\nold ncdf package is still available at the URL given below, if you need\nto have backward compatibility. It should be possible to have both the\nncdf and ncdf4 packages installed simultaneously without a problem.\nHowever, the ncdf package does not provide an interface for netcdf\nversion 4 files.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ncdf4_1.15.tar.gz" ], "version": "1.15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ncdf4_1.16.tar.gz" ], "version": "1.16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ncdf4_1.16.1.tar.gz" ], "version": "1.16.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ncdf4_1.17.tar.gz" ], "version": "1.17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ncdf4_1.19.tar.gz" ], "version": "1.19" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ncdf4_1.21.tar.gz" ], "version": "1.21" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ncdf4_1.23.tar.gz" ], "version": "1.23" } ] }, "r-network": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-magrittr", "r-statnet-common", "r-tibble" ], "downloads": [ "https://cloud.r-project.org/src/contrib/network_1.18.2.tar.gz", "https://cloud.r-project.org/src/contrib/network_1.18.1.tar.gz", "https://cloud.r-project.org/src/contrib/network_1.18.0.tar.gz", "https://cloud.r-project.org/src/contrib/network_1.17.2.tar.gz", "https://cloud.r-project.org/src/contrib/network_1.17.1.tar.gz", "https://cloud.r-project.org/src/contrib/network_1.16.1.tar.gz", "https://cloud.r-project.org/src/contrib/network_1.15.tar.gz", "https://cloud.r-project.org/src/contrib/network_1.14-377.tar.gz", "https://cloud.r-project.org/src/contrib/network_1.13.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=network" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-network", "patches": [], "summary": "Classes for Relational Data. Tools to create and modify network objects.\nThe network class can represent a range of relational data types, and\nsupports arbitrary vertex/edge/graph attributes.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/network_1.13.0.tar.gz" ], "version": "1.13.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/network_1.14-377.tar.gz" ], "version": "1.14-377" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/network_1.15.tar.gz" ], "version": "1.15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/network_1.16.1.tar.gz" ], "version": "1.16.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/network_1.17.1.tar.gz" ], "version": "1.17.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/network_1.17.2.tar.gz" ], "version": "1.17.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/network_1.18.0.tar.gz" ], "version": "1.18.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/network_1.18.1.tar.gz" ], "version": "1.18.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/network_1.18.2.tar.gz" ], "version": "1.18.2" } ] }, "r-networkd3": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-htmlwidgets", "r-igraph", "r-magrittr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/networkD3_0.4.tar.gz", "https://cloud.r-project.org/src/contrib/networkD3_0.3.tar.gz", "https://cloud.r-project.org/src/contrib/networkD3_0.2.12.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=networkD3" ], "licenses": [], "maintainers": [], "name": "r-networkd3", "patches": [], "summary": "D3 JavaScript Network Graphs from R. Creates 'D3' 'JavaScript' network,\ntree, dendrogram, and Sankey graphs from 'R'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/networkD3_0.2.12.tar.gz" ], "version": "0.2.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/networkD3_0.3.tar.gz" ], "version": "0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/networkD3_0.4.tar.gz" ], "version": "0.4" } ] }, "r-neuralnet": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-deriv", "r-mass" ], "downloads": [ "https://cloud.r-project.org/src/contrib/neuralnet_1.44.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=neuralnet" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-neuralnet", "patches": [], "summary": "Training of Neural Networks. Training of neural networks using\nbackpropagation, resilient backpropagation with (Riedmiller, 1994) or\nwithout weight backtracking (Riedmiller and Braun, 1993) or the modified\nglobally convergent version by Anastasiadis et al. (2005). The package\nallows flexible settings through custom-choice of error and activation\nfunction. Furthermore, the calculation of generalized weights (Intrator\nO & Intrator N, 1993) is implemented.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/neuralnet_1.44.2.tar.gz" ], "version": "1.44.2" } ] }, "r-nfactors": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-lattice", "r-mass", "r-psych" ], "downloads": [ "https://cloud.r-project.org/src/contrib/nFactors_2.4.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/nFactors_2.4.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=nFactors" ], "licenses": [], "maintainers": [], "name": "r-nfactors", "patches": [], "summary": "Parallel Analysis and Other Non Graphical Solutions to the Cattell Scree\nTest. Indices, heuristics and strategies to help determine the number of\nfactors/components to retain: 1. Acceleration factor (af with or without\nParallel Analysis); 2. Optimal Coordinates (noc with or without Parallel\nAnalysis); 3. Parallel analysis (components, factors and bootstrap); 4.\nlambda > mean(lambda) (Kaiser, CFA and related); 5. Cattell-Nelson-\nGorsuch (CNG); 6. Zoski and Jurs multiple regression (b, t and p); 7.\nZoski and Jurs standard error of the regression coeffcient (sescree); 8.\nNelson R2; 9. Bartlett khi-2; 10. Anderson khi-2; 11. Lawley khi-2 and\n12. Bentler-Yuan khi-2.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/nFactors_2.4.1.tar.gz" ], "version": "2.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nFactors_2.4.1.1.tar.gz" ], "version": "2.4.1.1" } ] }, "r-nimble": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-coda", "r-igraph", "r-numderiv", "r-pracma", "r-r6" ], "downloads": [ "https://cloud.r-project.org/src/contrib/nimble_1.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/nimble_0.13.1.tar.gz", "https://cloud.r-project.org/src/contrib/nimble_0.12.2.tar.gz", "https://cloud.r-project.org/src/contrib/nimble_0.12.1.tar.gz", "https://cloud.r-project.org/src/contrib/nimble_0.10.1.tar.gz", "https://cloud.r-project.org/src/contrib/nimble_0.9.1.tar.gz", "https://cloud.r-project.org/src/contrib/nimble_0.9.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=nimble" ], "licenses": [ "BSD-3-Clause OR GPL-2.0-or-later" ], "maintainers": [], "name": "r-nimble", "patches": [], "summary": "MCMC, Particle Filtering, and Programmable Hierarchical Modeling. A\nsystem for writing hierarchical statistical models largely compatible\nwith 'BUGS' and 'JAGS', writing nimbleFunctions to operate models and do\nbasic R-style math, and compiling both models and nimbleFunctions via\ncustom-generated C++. 'NIMBLE' includes default methods for MCMC, Monte\nCarlo Expectation Maximization, and some other tools. The nimbleFunction\nsystem makes it easy to do things like implement new MCMC samplers from\nR, customize the assignment of samplers to different parts of a model\nfrom R, and compile the new samplers automatically via C++ alongside the\nsamplers 'NIMBLE' provides. 'NIMBLE' extends the 'BUGS'/'JAGS' language\nby making it extensible: New distributions and functions can be added,\nincluding as calls to external compiled code. Although most people think\nof MCMC as the main goal of the 'BUGS'/'JAGS' language for writing\nmodels, one can use 'NIMBLE' for writing arbitrary other kinds of model-\ngeneric algorithms as well. A full User Manual is available at\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/nimble_0.10.1.tar.gz" ], "version": "0.10.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nimble_0.12.1.tar.gz" ], "version": "0.12.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nimble_0.12.2.tar.gz" ], "version": "0.12.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nimble_0.13.1.tar.gz" ], "version": "0.13.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nimble_0.9.0.tar.gz" ], "version": "0.9.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nimble_0.9.1.tar.gz" ], "version": "0.9.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nimble_1.2.1.tar.gz" ], "version": "1.2.1" } ] }, "r-nleqslv": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/nleqslv_3.3.5.tar.gz", "https://cloud.r-project.org/src/contrib/nleqslv_3.3.4.tar.gz", "https://cloud.r-project.org/src/contrib/nleqslv_3.3.3.tar.gz", "https://cloud.r-project.org/src/contrib/nleqslv_3.3.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=nleqslv" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-nleqslv", "patches": [], "summary": "Solve Systems of Nonlinear Equations. Solve a system of nonlinear\nequations using a Broyden or a Newton method with a choice of global\nstrategies such as line search and trust region. There are options for\nusing a numerical or user supplied Jacobian, for specifying a banded\nnumerical Jacobian and for allowing a singular or ill-conditioned\nJacobian.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/nleqslv_3.3.2.tar.gz" ], "version": "3.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nleqslv_3.3.3.tar.gz" ], "version": "3.3.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nleqslv_3.3.4.tar.gz" ], "version": "3.3.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nleqslv_3.3.5.tar.gz" ], "version": "3.3.5" } ] }, "r-nlme": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "fortran", "gettext", "gmake", "r", "r-lattice" ], "downloads": [ "https://cloud.r-project.org/src/contrib/nlme_3.1-166.tar.gz", "https://cloud.r-project.org/src/contrib/nlme_3.1-162.tar.gz", "https://cloud.r-project.org/src/contrib/nlme_3.1-160.tar.gz", "https://cloud.r-project.org/src/contrib/nlme_3.1-159.tar.gz", "https://cloud.r-project.org/src/contrib/nlme_3.1-157.tar.gz", "https://cloud.r-project.org/src/contrib/nlme_3.1-155.tar.gz", "https://cloud.r-project.org/src/contrib/nlme_3.1-153.tar.gz", "https://cloud.r-project.org/src/contrib/nlme_3.1-152.tar.gz", "https://cloud.r-project.org/src/contrib/nlme_3.1-151.tar.gz", "https://cloud.r-project.org/src/contrib/nlme_3.1-141.tar.gz", "https://cloud.r-project.org/src/contrib/nlme_3.1-139.tar.gz", "https://cloud.r-project.org/src/contrib/nlme_3.1-131.tar.gz", "https://cloud.r-project.org/src/contrib/nlme_3.1-130.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=nlme" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-nlme", "patches": [], "summary": "Linear and Nonlinear Mixed Effects Models. Fit and compare Gaussian\nlinear and nonlinear mixed-effects models.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/nlme_3.1-130.tar.gz" ], "version": "3.1-130" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nlme_3.1-131.tar.gz" ], "version": "3.1-131" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nlme_3.1-139.tar.gz" ], "version": "3.1-139" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nlme_3.1-141.tar.gz" ], "version": "3.1-141" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nlme_3.1-151.tar.gz" ], "version": "3.1-151" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nlme_3.1-152.tar.gz" ], "version": "3.1-152" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nlme_3.1-153.tar.gz" ], "version": "3.1-153" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nlme_3.1-155.tar.gz" ], "version": "3.1-155" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nlme_3.1-157.tar.gz" ], "version": "3.1-157" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nlme_3.1-159.tar.gz" ], "version": "3.1-159" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nlme_3.1-160.tar.gz" ], "version": "3.1-160" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nlme_3.1-162.tar.gz" ], "version": "3.1-162" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nlme_3.1-166.tar.gz" ], "version": "3.1-166" } ] }, "r-nloptr": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "nlopt", "r", "r-testthat" ], "downloads": [ "https://cloud.r-project.org/src/contrib/nloptr_2.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/nloptr_2.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/nloptr_2.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/nloptr_1.2.2.3.tar.gz", "https://cloud.r-project.org/src/contrib/nloptr_1.2.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/nloptr_1.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/nloptr_1.0.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=nloptr" ], "licenses": [ "LGPL-3.0-or-later" ], "maintainers": [], "name": "r-nloptr", "patches": [], "summary": "R Interface to NLopt. Solve optimization problems using an R interface\nto NLopt. NLopt is a free/open-source library for nonlinear\noptimization, providing a common interface for a number of different\nfree optimization routines available online as well as original\nimplementations of various other algorithms. See\n for more\ninformation on the available algorithms. Building from included sources\nrequires 'CMake'. On Linux and 'macOS', if a suitable system build of\nNLopt (2.7.0 or later) is found, it is used; otherwise, it is built from\nincluded sources via 'CMake'. On Windows, NLopt is obtained through\n'rwinlib' for 'R <= 4.1.x' or grabbed from the 'Rtools42 toolchain' for\n'R >= 4.2.0'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/nloptr_1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nloptr_1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nloptr_1.2.2.2.tar.gz" ], "version": "1.2.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nloptr_1.2.2.3.tar.gz" ], "version": "1.2.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nloptr_2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nloptr_2.0.3.tar.gz" ], "version": "2.0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nloptr_2.1.1.tar.gz" ], "version": "2.1.1" } ] }, "r-nmf": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-biobase", "r-biocmanager", "r-cluster", "r-codetools", "r-colorspace", "r-digest", "r-doparallel", "r-foreach", "r-ggplot2", "r-gridbase", "r-pkgmaker", "r-rcolorbrewer", "r-registry", "r-reshape2", "r-rngtools", "r-stringr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/NMF_0.27.tar.gz", "https://cloud.r-project.org/src/contrib/NMF_0.26.tar.gz", "https://cloud.r-project.org/src/contrib/NMF_0.24.0.tar.gz", "https://cloud.r-project.org/src/contrib/NMF_0.23.0.tar.gz", "https://cloud.r-project.org/src/contrib/NMF_0.21.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=NMF" ], "licenses": [], "maintainers": [], "name": "r-nmf", "patches": [], "summary": "Algorithms and Framework for Nonnegative Matrix Factorization (NMF).\nProvides a framework to perform Non-negative Matrix Factorization (NMF).\nThe package implements a set of already published algorithms and seeding\nmethods, and provides a framework to test, develop and plug new/custom\nalgorithms. Most of the built-in algorithms have been optimized in C++,\nand the main interface function provides an easy way of performing\nparallel computations on multicore machines.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/NMF_0.21.0.tar.gz" ], "version": "0.21.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/NMF_0.23.0.tar.gz" ], "version": "0.23.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/NMF_0.24.0.tar.gz" ], "version": "0.24.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/NMF_0.26.tar.gz" ], "version": "0.26" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/NMF_0.27.tar.gz" ], "version": "0.27" } ] }, "r-nmof": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/NMOF_2.8-0.tar.gz", "https://cloud.r-project.org/src/contrib/NMOF_2.7-1.tar.gz", "https://cloud.r-project.org/src/contrib/NMOF_2.7-0.tar.gz", "https://cloud.r-project.org/src/contrib/NMOF_2.5-1.tar.gz", "https://cloud.r-project.org/src/contrib/NMOF_2.5-0.tar.gz", "https://cloud.r-project.org/src/contrib/NMOF_2.2-2.tar.gz", "https://cloud.r-project.org/src/contrib/NMOF_1.6-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=NMOF" ], "licenses": [], "maintainers": [], "name": "r-nmof", "patches": [], "summary": "Numerical Methods and Optimization in Finance. Functions, examples and\ndata from the book \"Numerical Methods and Optimization in Finance\" by M.\nGilli, D. Maringer and E. Schumann (2011), ISBN 978-0123756626. The\npackage provides implementations of several optimisation heuristics,\nsuch as Differential Evolution, Genetic Algorithms and Threshold\nAccepting. There are also functions for the valuation of financial\ninstruments, such as bonds and options, and functions that help with\nstochastic simulations.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/NMOF_1.6-0.tar.gz" ], "version": "1.6-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/NMOF_2.2-2.tar.gz" ], "version": "2.2-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/NMOF_2.5-0.tar.gz" ], "version": "2.5-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/NMOF_2.5-1.tar.gz" ], "version": "2.5-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/NMOF_2.7-0.tar.gz" ], "version": "2.7-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/NMOF_2.7-1.tar.gz" ], "version": "2.7-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/NMOF_2.8-0.tar.gz" ], "version": "2.8-0" } ] }, "r-nnet": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/nnet_7.3-20.tar.gz", "https://cloud.r-project.org/src/contrib/nnet_7.3-19.tar.gz", "https://cloud.r-project.org/src/contrib/nnet_7.3-18.tar.gz", "https://cloud.r-project.org/src/contrib/nnet_7.3-17.tar.gz", "https://cloud.r-project.org/src/contrib/nnet_7.3-14.tar.gz", "https://cloud.r-project.org/src/contrib/nnet_7.3-12.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=nnet" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-nnet", "patches": [], "summary": "Feed-Forward Neural Networks and Multinomial Log-Linear Models. Software\nfor feed-forward neural networks with a single hidden layer, and for\nmultinomial log-linear models.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/nnet_7.3-12.tar.gz" ], "version": "7.3-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nnet_7.3-14.tar.gz" ], "version": "7.3-14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nnet_7.3-17.tar.gz" ], "version": "7.3-17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nnet_7.3-18.tar.gz" ], "version": "7.3-18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nnet_7.3-19.tar.gz" ], "version": "7.3-19" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nnet_7.3-20.tar.gz" ], "version": "7.3-20" } ] }, "r-nnls": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/nnls_1.5.tar.gz", "https://cloud.r-project.org/src/contrib/nnls_1.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=nnls" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-nnls", "patches": [], "summary": "The Lawson-Hanson algorithm for non-negative least squares (NNLS). An R\ninterface to the Lawson-Hanson implementation of an algorithm for non-\nnegative least squares (NNLS). Also allows the combination of non-\nnegative and non-positive constraints.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/nnls_1.4.tar.gz" ], "version": "1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nnls_1.5.tar.gz" ], "version": "1.5" } ] }, "r-nonnest2": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-compquadform", "r-lavaan", "r-mvtnorm", "r-sandwich" ], "downloads": [ "https://cloud.r-project.org/src/contrib/nonnest2_0.5-7.tar.gz", "https://cloud.r-project.org/src/contrib/nonnest2_0.5-5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=nonnest2" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-nonnest2", "patches": [], "summary": "Tests of Non-Nested Models. Testing non-nested models via theory\nsupplied by Vuong (1989) . Includes tests of model\ndistinguishability and of model fit that can be applied to both nested\nand non-nested models. Also includes functionality to obtain confidence\nintervals associated with AIC and BIC. This material is partially based\non work supported by the National Science Foundation under Grant Number\nSES-1061334.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/nonnest2_0.5-5.tar.gz" ], "version": "0.5-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nonnest2_0.5-7.tar.gz" ], "version": "0.5-7" } ] }, "r-nor1mix": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/nor1mix_1.3-3.tar.gz", "https://cloud.r-project.org/src/contrib/nor1mix_1.3-0.tar.gz", "https://cloud.r-project.org/src/contrib/nor1mix_1.2-3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=nor1mix" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-nor1mix", "patches": [], "summary": "Normal aka Gaussian (1-d) Mixture Models (S3 Classes and Methods). One\ndimensional Normal Mixture Models Classes, for, e.g., density estimation\nor clustering algorithms research and teaching; providing the widely\nused Marron-Wand densities. Efficient random number generation and\ngraphics; now fitting to data by ML (Maximum Likelihood) or EM\nestimation.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/nor1mix_1.2-3.tar.gz" ], "version": "1.2-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nor1mix_1.3-0.tar.gz" ], "version": "1.3-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/nor1mix_1.3-3.tar.gz" ], "version": "1.3-3" } ] }, "r-nortest": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/nortest_1.0-4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=nortest" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-nortest", "patches": [], "summary": "Tests for Normality. Five omnibus tests for testing the composite\nhypothesis of normality.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/nortest_1.0-4.tar.gz" ], "version": "1.0-4" } ] }, "r-np": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-boot", "r-cubature", "r-quadprog", "r-quantreg" ], "downloads": [ "https://cloud.r-project.org/src/contrib/np_0.60-17.tar.gz", "https://cloud.r-project.org/src/contrib/np_0.60-16.tar.gz", "https://cloud.r-project.org/src/contrib/np_0.60-14.tar.gz", "https://cloud.r-project.org/src/contrib/np_0.60-11.tar.gz", "https://cloud.r-project.org/src/contrib/np_0.60-10.tar.gz", "https://cloud.r-project.org/src/contrib/np_0.60-9.tar.gz", "https://cloud.r-project.org/src/contrib/np_0.60-8.tar.gz", "https://cloud.r-project.org/src/contrib/np_0.60-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=np" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-np", "patches": [], "summary": "Nonparametric Kernel Smoothing Methods for Mixed Data Types. This\npackage provides a variety of nonparametric (and semiparametric) kernel\nmethods that seamlessly handle a mix of continuous, unordered, and\nordered factor data types. We would like to gratefully acknowledge\nsupport from the Natural Sciences and Engineering Research Council of\nCanada (NSERC:www.nserc.ca), the Social Sciences and Humanities Research\nCouncil of Canada (SSHRC:www.sshrc.ca), and the Shared Hierarchical\nAcademic Research Computing Network (SHARCNET:www.sharcnet.ca).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/np_0.60-10.tar.gz" ], "version": "0.60-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/np_0.60-11.tar.gz" ], "version": "0.60-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/np_0.60-14.tar.gz" ], "version": "0.60-14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/np_0.60-16.tar.gz" ], "version": "0.60-16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/np_0.60-17.tar.gz" ], "version": "0.60-17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/np_0.60-2.tar.gz" ], "version": "0.60-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/np_0.60-8.tar.gz" ], "version": "0.60-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/np_0.60-9.tar.gz" ], "version": "0.60-9" } ] }, "r-npsurv": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-lsei" ], "downloads": [ "https://cloud.r-project.org/src/contrib/npsurv_0.5-0.tar.gz", "https://cloud.r-project.org/src/contrib/npsurv_0.4-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=npsurv" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-npsurv", "patches": [], "summary": "Nonparametric Survival Analysis. Non-parametric survival analysis of\nexact and interval-censored observations. The methods implemented are\ndeveloped by Wang (2007) , Wang\n(2008) , Wang and Taylor (2013)\n and Wang and Fani (2018)\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/npsurv_0.4-0.tar.gz" ], "version": "0.4-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/npsurv_0.5-0.tar.gz" ], "version": "0.5-0" } ] }, "r-numderiv": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/numDeriv_2016.8-1.1.tar.gz", "https://cloud.r-project.org/src/contrib/numDeriv_2016.8-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=numDeriv" ], "licenses": [], "maintainers": [], "name": "r-numderiv", "patches": [], "summary": "Accurate Numerical Derivatives. Methods for calculating (usually)\naccurate numerical first and second order derivatives. Accurate\ncalculations are done using 'Richardson\"s' extrapolation or, when\napplicable, a complex step derivative is available. A simple difference\nmethod is also provided. Simple difference is (usually) less accurate\nbut is much quicker than 'Richardson\"s' extrapolation and provides a\nuseful cross-check. Methods are provided for real scalar and vector\nvalued functions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/numDeriv_2016.8-1.tar.gz" ], "version": "2016.8-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/numDeriv_2016.8-1.1.tar.gz" ], "version": "2016.8-1.1" } ] }, "r-oligoclasses": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-affyio", "r-biobase", "r-biocgenerics", "r-biocinstaller", "r-biocmanager", "r-biostrings", "r-dbi", "r-ff", "r-foreach", "r-genomicranges", "r-iranges", "r-rsqlite", "r-s4vectors", "r-summarizedexperiment" ], "downloads": [ "https://git.bioconductor.org/packages/oligoClasses" ], "homepages": [ "https://bioconductor.org/packages/oligoClasses" ], "licenses": [], "maintainers": [], "name": "r-oligoclasses", "patches": [], "summary": "Classes for high-throughput arrays supported by oligo and crlmm. 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Supports RSA, DSA and EC curves P-256, P-384 and P-521.\nCryptographic signatures can either be created and verified manually or\nvia x509 certificates. AES can be used in cbc, ctr or gcm mode for\nsymmetric encryption; RSA for asymmetric (public key) encryption or EC\nfor Diffie Hellman. High-level envelope functions combine RSA and AES\nfor encrypting arbitrary sized data. Other utilities include key\ngenerators, hash functions (md5, sha1, sha256, etc), base64 encoder, a\nsecure random number generator, and 'bignum' math methods for manually\nperforming crypto calculations on large multibyte integers.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/openssl_0.9.4.tar.gz" ], "version": "0.9.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/openssl_0.9.6.tar.gz" ], "version": "0.9.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/openssl_0.9.7.tar.gz" ], "version": "0.9.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/openssl_1.3.tar.gz" ], "version": "1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/openssl_1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/openssl_1.4.3.tar.gz" ], "version": "1.4.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/openssl_1.4.5.tar.gz" ], "version": "1.4.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/openssl_1.4.6.tar.gz" ], "version": "1.4.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/openssl_2.0.2.tar.gz" ], "version": "2.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/openssl_2.0.3.tar.gz" ], "version": "2.0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/openssl_2.0.4.tar.gz" ], "version": "2.0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/openssl_2.0.6.tar.gz" ], "version": "2.0.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/openssl_2.2.1.tar.gz" ], "version": "2.2.1" } ] }, "r-openxlsx": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-rcpp", "r-stringi", "r-zip" ], "downloads": [ "https://cloud.r-project.org/src/contrib/openxlsx_4.2.6.1.tar.gz", "https://cloud.r-project.org/src/contrib/openxlsx_4.2.5.2.tar.gz", "https://cloud.r-project.org/src/contrib/openxlsx_4.2.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/openxlsx_4.2.5.tar.gz", "https://cloud.r-project.org/src/contrib/openxlsx_4.2.3.tar.gz", "https://cloud.r-project.org/src/contrib/openxlsx_4.1.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=openxlsx" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-openxlsx", "patches": [], "summary": "Read, Write and Edit xlsx Files. Simplifies the creation of Excel .xlsx\nfiles by providing a high level interface to writing, styling and\nediting worksheets. Through the use of 'Rcpp', read/write times are\ncomparable to the 'xlsx' and 'XLConnect' packages with the added benefit\nof removing the dependency on Java.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/openxlsx_4.1.0.1.tar.gz" ], "version": "4.1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/openxlsx_4.2.3.tar.gz" ], "version": "4.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/openxlsx_4.2.5.tar.gz" ], "version": "4.2.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/openxlsx_4.2.5.1.tar.gz" ], "version": "4.2.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/openxlsx_4.2.5.2.tar.gz" ], "version": "4.2.5.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/openxlsx_4.2.6.1.tar.gz" ], "version": "4.2.6.1" } ] }, "r-optimparallel": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/optimParallel_1.0-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=optimParallel" ], "licenses": [], "maintainers": [], "name": "r-optimparallel", "patches": [], "summary": "Parallel Version of the L-BFGS-B Optimization Method. Provides a\nparallel version of the L-BFGS-B method of optim(). The main function of\nthe package is optimParallel(), which has the same usage and output as\noptim(). Using optimParallel() can significantly reduce the optimization\ntime.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/optimParallel_1.0-2.tar.gz" ], "version": "1.0-2" } ] }, "r-optimx": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-nloptr", "r-numderiv", "r-pracma" ], "downloads": [ "https://cloud.r-project.org/src/contrib/optimx_2023-10.21.tar.gz", "https://cloud.r-project.org/src/contrib/optimx_2022-4.30.tar.gz", "https://cloud.r-project.org/src/contrib/optimx_2021-10.12.tar.gz", "https://cloud.r-project.org/src/contrib/optimx_2020-4.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=optimx" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-optimx", "patches": [], "summary": "Expanded Replacement and Extension of the 'optim' Function. Provides a\nreplacement and extension of the optim() function to call to several\nfunction minimization codes in R in a single statement. These methods\nhandle smooth, possibly box constrained functions of several or many\nparameters. Note that function 'optimr()' was prepared to simplify the\nincorporation of minimization codes going forward. Also implements some\nutility codes and some extra solvers, including safeguarded Newton\nmethods. Many methods previously separate are now included here. This is\nthe version for CRAN.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/optimx_2020-4.2.tar.gz" ], "version": "2020-4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/optimx_2021-10.12.tar.gz" ], "version": "2021-10.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/optimx_2022-4.30.tar.gz" ], "version": "2022-4.30" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/optimx_2023-10.21.tar.gz" ], "version": "2023-10.21" } ] }, "r-optparse": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-getopt" ], "downloads": [ "https://cloud.r-project.org/src/contrib/optparse_1.7.5.tar.gz", "https://cloud.r-project.org/src/contrib/optparse_1.7.3.tar.gz", "https://cloud.r-project.org/src/contrib/optparse_1.7.1.tar.gz", "https://cloud.r-project.org/src/contrib/optparse_1.6.6.tar.gz", "https://cloud.r-project.org/src/contrib/optparse_1.6.2.tar.gz", "https://cloud.r-project.org/src/contrib/optparse_1.6.1.tar.gz", "https://cloud.r-project.org/src/contrib/optparse_1.6.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=optparse" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-optparse", "patches": [], "summary": "Command Line Option Parser. A command line parser inspired by Python's\n'optparse' library to be used with Rscript to write \"#!\" shebang scripts\nthat accept short and long flag/options\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/optparse_1.6.0.tar.gz" ], "version": "1.6.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/optparse_1.6.1.tar.gz" ], "version": "1.6.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/optparse_1.6.2.tar.gz" ], "version": "1.6.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/optparse_1.6.6.tar.gz" ], "version": "1.6.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/optparse_1.7.1.tar.gz" ], "version": "1.7.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/optparse_1.7.3.tar.gz" ], "version": "1.7.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/optparse_1.7.5.tar.gz" ], "version": "1.7.5" } ] }, "r-ordinal": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-mass", "r-matrix", "r-nlme", "r-numderiv", "r-ucminf" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ordinal_2023.12-4.1.tar.gz", "https://cloud.r-project.org/src/contrib/ordinal_2022.11-16.tar.gz", "https://cloud.r-project.org/src/contrib/ordinal_2019.12-10.tar.gz", "https://cloud.r-project.org/src/contrib/ordinal_2019.4-25.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ordinal" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-ordinal", "patches": [], "summary": "Regression Models for Ordinal Data. Implementation of cumulative link\n(mixed) models also known as ordered regression models, proportional\nodds models, proportional hazards models for grouped survival times and\nordered logit/probit/... models. Estimation is via maximum likelihood\nand mixed models are fitted with the Laplace approximation and adaptive\nGauss-Hermite quadrature. Multiple random effect terms are allowed and\nthey may be nested, crossed or partially nested/crossed. Restrictions of\nsymmetry and equidistance can be imposed on the thresholds (cut-\npoints/intercepts). Standard model methods are available (summary,\nanova, drop-methods, step, confint, predict etc.) in addition to profile\nmethods and slice methods for visualizing the likelihood function and\nchecking convergence.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ordinal_2019.12-10.tar.gz" ], "version": "2019.12-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ordinal_2019.4-25.tar.gz" ], "version": "2019.4-25" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ordinal_2022.11-16.tar.gz" ], "version": "2022.11-16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ordinal_2023.12-4.1.tar.gz" ], "version": "2023.12-4.1" } ] }, "r-org-hs-eg-db": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotationdbi" ], "downloads": [ "https://www.bioconductor.org/packages/3.17/data/annotation/src/contrib/org.Hs.eg.db_3.17.0.tar.gz", "https://www.bioconductor.org/packages/3.16/data/annotation/src/contrib/org.Hs.eg.db_3.16.0.tar.gz", "https://www.bioconductor.org/packages/3.15/data/annotation/src/contrib/org.Hs.eg.db_3.15.0.tar.gz", "https://www.bioconductor.org/packages/3.14/data/annotation/src/contrib/org.Hs.eg.db_3.14.0.tar.gz", "https://www.bioconductor.org/packages/3.12/data/annotation/src/contrib/org.Hs.eg.db_3.12.0.tar.gz", "https://www.bioconductor.org/packages/3.9/data/annotation/src/contrib/org.Hs.eg.db_3.8.2.tar.gz", "https://www.bioconductor.org/packages/3.5/data/annotation/src/contrib/org.Hs.eg.db_3.4.1.tar.gz", "https://git.bioconductor.org/packages/org.Hs.eg.db" ], "homepages": [ "https://bioconductor.org/packages/org.Hs.eg.db" ], "licenses": [], "maintainers": [], "name": "r-org-hs-eg-db", "patches": [], "summary": "Genome wide annotation for Human. Genome wide annotation for Human,\nprimarily based on mapping using Entrez Gene identifiers.\n", "version": [ { "downloads": [ "https://www.bioconductor.org/packages/3.12/data/annotation/src/contrib/org.Hs.eg.db_3.12.0.tar.gz" ], "version": "3.12.0" }, { "downloads": [ "https://www.bioconductor.org/packages/3.14/data/annotation/src/contrib/org.Hs.eg.db_3.14.0.tar.gz" ], "version": "3.14.0" }, { "downloads": [ "https://www.bioconductor.org/packages/3.15/data/annotation/src/contrib/org.Hs.eg.db_3.15.0.tar.gz" ], "version": "3.15.0" }, { "downloads": [ "https://www.bioconductor.org/packages/3.16/data/annotation/src/contrib/org.Hs.eg.db_3.16.0.tar.gz" ], "version": "3.16.0" }, { "downloads": [ "https://www.bioconductor.org/packages/3.17/data/annotation/src/contrib/org.Hs.eg.db_3.17.0.tar.gz" ], "version": "3.17.0" }, { "downloads": [ "https://www.bioconductor.org/packages/3.5/data/annotation/src/contrib/org.Hs.eg.db_3.4.1.tar.gz" ], "version": "3.4.1" }, { "downloads": [ "https://www.bioconductor.org/packages/3.9/data/annotation/src/contrib/org.Hs.eg.db_3.8.2.tar.gz" ], "version": "3.8.2" } ] }, "r-organismdbi": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotationdbi", "r-biobase", "r-biocgenerics", "r-biocinstaller", "r-biocmanager", "r-dbi", "r-genomicfeatures", "r-genomicranges", "r-graph", "r-iranges", "r-rbgl", "r-s4vectors" ], "downloads": [ "https://git.bioconductor.org/packages/OrganismDbi" ], "homepages": [ "https://bioconductor.org/packages/OrganismDbi" ], "licenses": [], "maintainers": [], "name": "r-organismdbi", "patches": [], "summary": "Software to enable the smooth interfacing of different database\npackages. The package enables a simple unified interface to several\nannotation packages each of which has its own schema by taking advantage\nof the fact that each of these packages implements a select methods.\n", "version": [ { "repositories": [ { "commit": "ba2d1237256805e935d9534a0c6f1ded07b42e95", "type": "git", "url": "https://git.bioconductor.org/packages/OrganismDbi" } ], "version": "1.18.1" }, { "repositories": [ { "commit": "d42e06a24777e5ffb966ad5addb4f46dfffa2269", "type": "git", "url": "https://git.bioconductor.org/packages/OrganismDbi" } ], "version": "1.20.0" }, { "repositories": [ { "commit": "24e953eb3847222d8018103b79b9fc72483cc513", "type": "git", "url": "https://git.bioconductor.org/packages/OrganismDbi" } ], "version": "1.22.0" }, { "repositories": [ { "commit": "3428952dc0f267a01e256a1c0873656cfbfde7f8", "type": "git", "url": "https://git.bioconductor.org/packages/OrganismDbi" } ], "version": "1.24.0" }, { "repositories": [ { "commit": "495b4a8f8264d06d827537d43b3c6cc705244bb5", "type": "git", "url": "https://git.bioconductor.org/packages/OrganismDbi" } ], "version": "1.26.0" }, { "repositories": [ { "commit": "c8100c4fea17bf1b10d4efacc73a7e2866d649e3", "type": "git", "url": "https://git.bioconductor.org/packages/OrganismDbi" } ], "version": "1.32.0" }, { "repositories": [ { "commit": "3e7a90d248ff09f05ccd381ff921e12373a4b330", "type": "git", "url": "https://git.bioconductor.org/packages/OrganismDbi" } ], "version": "1.36.0" }, { "repositories": [ { "commit": "2ca01830a6ffcd0c0018d2bdbd3de8b4df716771", "type": "git", "url": "https://git.bioconductor.org/packages/OrganismDbi" } ], "version": "1.38.0" }, { "repositories": [ { "commit": "fa8da4dd42ab15e1d21fd9f8286440596d50b1ec", "type": "git", "url": "https://git.bioconductor.org/packages/OrganismDbi" } ], "version": "1.38.1" }, { "repositories": [ { "commit": "fac971dabef3b6d2473d2061bc1723e3de59c9d7", "type": "git", "url": "https://git.bioconductor.org/packages/OrganismDbi" } ], "version": "1.40.0" }, { "repositories": [ { "commit": "29fcd5c47f8c479edac630a8e2a05ec5facb1328", "type": "git", "url": "https://git.bioconductor.org/packages/OrganismDbi" } ], "version": "1.42.0" } ] }, "r-osqp": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "r", "r-matrix", "r-r6", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/osqp_0.6.3.3.tar.gz", "https://cloud.r-project.org/src/contrib/osqp_0.6.0.8.tar.gz", "https://cloud.r-project.org/src/contrib/osqp_0.6.0.7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=osqp" ], "licenses": [ "Apache-2.0 OR custom" ], "maintainers": [], "name": "r-osqp", "patches": [], "summary": "Quadratic Programming Solver using the 'OSQP' Library. Provides bindings\nto the 'OSQP' solver. The 'OSQP' solver is a numerical optimization\npackage or solving convex quadratic programs written in 'C' and based on\nthe alternating direction method of multipliers. See \nfor details.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/osqp_0.6.0.7.tar.gz" ], "version": "0.6.0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/osqp_0.6.0.8.tar.gz" ], "version": "0.6.0.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/osqp_0.6.3.3.tar.gz" ], "version": "0.6.3.3" } ] }, "r-packrat": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/packrat_0.9.2.tar.gz", "https://cloud.r-project.org/src/contrib/packrat_0.9.1.tar.gz", "https://cloud.r-project.org/src/contrib/packrat_0.8.1.tar.gz", "https://cloud.r-project.org/src/contrib/packrat_0.8.0.tar.gz", "https://cloud.r-project.org/src/contrib/packrat_0.7.0.tar.gz", "https://cloud.r-project.org/src/contrib/packrat_0.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/packrat_0.4.9-3.tar.gz", "https://cloud.r-project.org/src/contrib/packrat_0.4.8-1.tar.gz", "https://cloud.r-project.org/src/contrib/packrat_0.4.7-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=packrat" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-packrat", "patches": [], "summary": "A Dependency Management System for Projects and their R Package\nDependencies. Manage the R packages your project depends on in an\nisolated, portable, and reproducible way.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/packrat_0.4.7-1.tar.gz" ], "version": "0.4.7-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/packrat_0.4.8-1.tar.gz" ], "version": "0.4.8-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/packrat_0.4.9-3.tar.gz" ], "version": "0.4.9-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/packrat_0.5.0.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/packrat_0.7.0.tar.gz" ], "version": "0.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/packrat_0.8.0.tar.gz" ], "version": "0.8.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/packrat_0.8.1.tar.gz" ], "version": "0.8.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/packrat_0.9.1.tar.gz" ], "version": "0.9.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/packrat_0.9.2.tar.gz" ], "version": "0.9.2" } ] }, "r-pacman": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-devtools", "r-remotes" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pacman_0.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/pacman_0.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/pacman_0.4.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pacman" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-pacman", "patches": [], "summary": "Package Management Tool. Tools to more conveniently perform tasks\nassociated with add-on packages. pacman conveniently wraps library and\npackage related functions and names them in an intuitive and consistent\nfashion. It seeks to combine functionality from lower level functions\nwhich can speed up workflow.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pacman_0.4.1.tar.gz" ], "version": "0.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pacman_0.5.0.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pacman_0.5.1.tar.gz" ], "version": "0.5.1" } ] }, "r-paleotree": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ape", "r-jsonlite", "r-phangorn", "r-phytools", "r-png", "r-rcurl" ], "downloads": [ "https://cloud.r-project.org/src/contrib/paleotree_3.4.7.tar.gz", "https://cloud.r-project.org/src/contrib/paleotree_3.4.5.tar.gz", "https://cloud.r-project.org/src/contrib/paleotree_3.4.4.tar.gz", "https://cloud.r-project.org/src/contrib/paleotree_3.3.25.tar.gz", "https://cloud.r-project.org/src/contrib/paleotree_3.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/paleotree_3.1.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=paleotree" ], "licenses": [ "CC0-1.0" ], "maintainers": [], "name": "r-paleotree", "patches": [], "summary": "Paleontological and Phylogenetic Analyses of Evolution. Provides tools\nfor transforming, a posteriori time-scaling, and modifying phylogenies\ncontaining extinct (i.e. fossil) lineages\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/paleotree_3.1.3.tar.gz" ], "version": "3.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/paleotree_3.3.0.tar.gz" ], "version": "3.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/paleotree_3.3.25.tar.gz" ], "version": "3.3.25" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/paleotree_3.4.4.tar.gz" ], "version": "3.4.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/paleotree_3.4.5.tar.gz" ], "version": "3.4.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/paleotree_3.4.7.tar.gz" ], "version": "3.4.7" } ] }, "r-pamr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cluster", "r-survival" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pamr_1.57.tar.gz", "https://cloud.r-project.org/src/contrib/pamr_1.56.1.tar.gz", "https://cloud.r-project.org/src/contrib/pamr_1.55.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pamr" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-pamr", "patches": [], "summary": "Pam: Prediction Analysis for Microarrays Some functions for sample\nclassification in microarrays.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pamr_1.55.tar.gz" ], "version": "1.55" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pamr_1.56.1.tar.gz" ], "version": "1.56.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pamr_1.57.tar.gz" ], "version": "1.57" } ] }, "r-pan": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pan_1.9.tar.gz", "https://cloud.r-project.org/src/contrib/pan_1.6.tar.gz", "https://cloud.r-project.org/src/contrib/pan_1.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pan" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-pan", "patches": [], "summary": "Multiple imputation for multivariate panel or clustered data. It\nprovides functions and examples for maximum likelihood estimation for\ngeneralized linear mixed models and Gibbs sampler for multivariate\nlinear mixed models with incomplete data, as described in Schafer JL\n(1997) \"Imputation of missing covariates under a multivariate linear\nmixed model\". Technical report 97-04, Dept. of Statistics, The\nPennsylvania State University.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pan_1.4.tar.gz" ], "version": "1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pan_1.6.tar.gz" ], "version": "1.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pan_1.9.tar.gz" ], "version": "1.9" } ] }, "r-parallelly": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/parallelly_1.45.1.tar.gz", "https://cloud.r-project.org/src/contrib/parallelly_1.38.0.tar.gz", "https://cloud.r-project.org/src/contrib/parallelly_1.35.0.tar.gz", "https://cloud.r-project.org/src/contrib/parallelly_1.32.1.tar.gz", "https://cloud.r-project.org/src/contrib/parallelly_1.31.1.tar.gz", "https://cloud.r-project.org/src/contrib/parallelly_1.30.0.tar.gz", "https://cloud.r-project.org/src/contrib/parallelly_1.28.1.tar.gz", "https://cloud.r-project.org/src/contrib/parallelly_1.23.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=parallelly" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "r-parallelly", "patches": [], "summary": "Enhancing the 'parallel' Package. Utility functions that enhance the\n'parallel' package and support the built-in parallel backends of the\n'future' package. For example, availableCores() gives the number of CPU\ncores available to your R process as given by the operating system,\n'cgroups' and Linux containers, R options, and environment variables,\nincluding those set by job schedulers on high-performance compute\nclusters. If none is set, it will fall back to parallel::detectCores().\nAnother example is makeClusterPSOCK(), which is backward compatible with\nparallel::makePSOCKcluster() while doing a better job in setting up\nremote cluster workers without the need for configuring the firewall to\ndo port-forwarding to your local computer.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/parallelly_1.23.0.tar.gz" ], "version": "1.23.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/parallelly_1.28.1.tar.gz" ], "version": "1.28.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/parallelly_1.30.0.tar.gz" ], "version": "1.30.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/parallelly_1.31.1.tar.gz" ], "version": "1.31.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/parallelly_1.32.1.tar.gz" ], "version": "1.32.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/parallelly_1.35.0.tar.gz" ], "version": "1.35.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/parallelly_1.38.0.tar.gz" ], "version": "1.38.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/parallelly_1.45.1.tar.gz" ], "version": "1.45.1" } ] }, "r-parallelmap": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-bbmisc", "r-checkmate" ], "downloads": [ "https://cloud.r-project.org/src/contrib/parallelMap_1.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/parallelMap_1.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/parallelMap_1.4.tar.gz", "https://cloud.r-project.org/src/contrib/parallelMap_1.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=parallelMap" ], "licenses": [], "maintainers": [], "name": "r-parallelmap", "patches": [], "summary": "Unified Interface to Parallelization Back-Ends. Unified parallelization\nframework for multiple back-end, designed for internal package and\ninteractive usage. The main operation is a parallel \"map\" over lists.\nSupports local, multicore, mpi and BatchJobs mode. Allows \"tagging\" of\nthe parallel operation with a level name that can be later selected by\nthe user to switch on parallel execution for exactly this operation.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/parallelMap_1.3.tar.gz" ], "version": "1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/parallelMap_1.4.tar.gz" ], "version": "1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/parallelMap_1.5.0.tar.gz" ], "version": "1.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/parallelMap_1.5.1.tar.gz" ], "version": "1.5.1" } ] }, "r-paramhelpers": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-backports", "r-bbmisc", "r-checkmate", "r-fastmatch" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ParamHelpers_1.14.1.tar.gz", "https://cloud.r-project.org/src/contrib/ParamHelpers_1.14.tar.gz", "https://cloud.r-project.org/src/contrib/ParamHelpers_1.12.tar.gz", "https://cloud.r-project.org/src/contrib/ParamHelpers_1.11.tar.gz", "https://cloud.r-project.org/src/contrib/ParamHelpers_1.10.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ParamHelpers" ], "licenses": [], "maintainers": [], "name": "r-paramhelpers", "patches": [], "summary": "Helpers for Parameters in Black-Box Optimization, Tuning and Machine\nLearning. Functions for parameter descriptions and operations in black-\nbox optimization, tuning and machine learning. Parameters can be\ndescribed (type, constraints, defaults, etc.), combined to parameter\nsets and can in general be programmed on. A useful OptPath object\n(archive) to log function evaluations is also provided.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ParamHelpers_1.10.tar.gz" ], "version": "1.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ParamHelpers_1.11.tar.gz" ], "version": "1.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ParamHelpers_1.12.tar.gz" ], "version": "1.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ParamHelpers_1.14.tar.gz" ], "version": "1.14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ParamHelpers_1.14.1.tar.gz" ], "version": "1.14.1" } ] }, "r-party": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-coin", "r-modeltools", "r-mvtnorm", "r-sandwich", "r-strucchange", "r-survival", "r-zoo" ], "downloads": [ "https://cloud.r-project.org/src/contrib/party_1.3-17.tar.gz", "https://cloud.r-project.org/src/contrib/party_1.3-13.tar.gz", "https://cloud.r-project.org/src/contrib/party_1.3-11.tar.gz", "https://cloud.r-project.org/src/contrib/party_1.3-10.tar.gz", "https://cloud.r-project.org/src/contrib/party_1.3-9.tar.gz", "https://cloud.r-project.org/src/contrib/party_1.3-5.tar.gz", "https://cloud.r-project.org/src/contrib/party_1.3-3.tar.gz", "https://cloud.r-project.org/src/contrib/party_1.3-2.tar.gz", "https://cloud.r-project.org/src/contrib/party_1.1-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=party" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-party", "patches": [], "summary": "A Laboratory for Recursive Partytioning. A computational toolbox for\nrecursive partitioning. The core of the package is ctree(), an\nimplementation of conditional inference trees which embed tree-\nstructured regression models into a well defined theory of conditional\ninference procedures. This non-parametric class of regression trees is\napplicable to all kinds of regression problems, including nominal,\nordinal, numeric, censored as well as multivariate response variables\nand arbitrary measurement scales of the covariates. Based on conditional\ninference trees, cforest() provides an implementation of Breiman's\nrandom forests. The function mob() implements an algorithm for recursive\npartitioning based on parametric models (e.g. linear models, GLMs or\nsurvival regression) employing parameter instability tests for split\nselection. Extensible functionality for visualizing tree-structured\nregression models is available. The methods are described in Hothorn et\nal. (2006) , Zeileis et al. (2008)\n and Strobl et al. (2007)\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/party_1.1-2.tar.gz" ], "version": "1.1-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/party_1.3-10.tar.gz" ], "version": "1.3-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/party_1.3-11.tar.gz" ], "version": "1.3-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/party_1.3-13.tar.gz" ], "version": "1.3-13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/party_1.3-17.tar.gz" ], "version": "1.3-17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/party_1.3-2.tar.gz" ], "version": "1.3-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/party_1.3-3.tar.gz" ], "version": "1.3-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/party_1.3-5.tar.gz" ], "version": "1.3-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/party_1.3-9.tar.gz" ], "version": "1.3-9" } ] }, "r-partykit": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-formula", "r-inum", "r-libcoin", "r-mvtnorm", "r-rpart", "r-survival" ], "downloads": [ "https://cloud.r-project.org/src/contrib/partykit_1.2-22.tar.gz", "https://cloud.r-project.org/src/contrib/partykit_1.2-20.tar.gz", "https://cloud.r-project.org/src/contrib/partykit_1.2-16.tar.gz", "https://cloud.r-project.org/src/contrib/partykit_1.2-15.tar.gz", "https://cloud.r-project.org/src/contrib/partykit_1.2-11.tar.gz", "https://cloud.r-project.org/src/contrib/partykit_1.2-5.tar.gz", "https://cloud.r-project.org/src/contrib/partykit_1.2-3.tar.gz", "https://cloud.r-project.org/src/contrib/partykit_1.1-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=partykit" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-partykit", "patches": [], "summary": "A Toolkit for Recursive Partytioning. A toolkit with infrastructure for\nrepresenting, summarizing, and visualizing tree-structured regression\nand classification models. This unified infrastructure can be used for\nreading/coercing tree models from different sources ('rpart', 'RWeka',\n'PMML') yielding objects that share functionality for\nprint()/plot()/predict() methods. Furthermore, new and improved\nreimplementations of conditional inference trees (ctree()) and model-\nbased recursive partitioning (mob()) from the 'party' package are\nprovided based on the new infrastructure. A description of this package\nwas published by Hothorn and Zeileis (2015)\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/partykit_1.1-1.tar.gz" ], "version": "1.1-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/partykit_1.2-11.tar.gz" ], "version": "1.2-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/partykit_1.2-15.tar.gz" ], "version": "1.2-15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/partykit_1.2-16.tar.gz" ], "version": "1.2-16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/partykit_1.2-20.tar.gz" ], "version": "1.2-20" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/partykit_1.2-22.tar.gz" ], "version": "1.2-22" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/partykit_1.2-3.tar.gz" ], "version": "1.2-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/partykit_1.2-5.tar.gz" ], "version": "1.2-5" } ] }, "r-patchwork": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-ggplot2", "r-gtable", "r-rlang" ], "downloads": [ "https://cloud.r-project.org/src/contrib/patchwork_1.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/patchwork_1.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/patchwork_1.1.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=patchwork" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-patchwork", "patches": [], "summary": "The Composer of Plots. The 'ggplot2' package provides a strong API for\nsequentially building up a plot, but does not concern itself with\ncomposition of multiple plots. 'patchwork' is a package that expands the\nAPI to allow for arbitrarily complex composition of plots by, among\nothers, providing mathematical operators for combining multiple plots.\nOther packages that try to address this need (but with a different\napproach) are 'gridExtra' and 'cowplot'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/patchwork_1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/patchwork_1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/patchwork_1.2.0.tar.gz" ], "version": "1.2.0" } ] }, "r-pathview": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotationdbi", "r-graph", "r-kegggraph", "r-keggrest", "r-org-hs-eg-db", "r-png", "r-rgraphviz", "r-xml" ], "downloads": [ "https://git.bioconductor.org/packages/pathview" ], "homepages": [ "https://bioconductor.org/packages/pathview" ], "licenses": [], "maintainers": [], "name": "r-pathview", "patches": [], "summary": "a tool set for pathway based data integration and visualization.\nPathview is a tool set for pathway based data integration and\nvisualization. It maps and renders a wide variety of biological data on\nrelevant pathway graphs. All users need is to supply their data and\nspecify the target pathway. Pathview automatically downloads the pathway\ngraph data, parses the data file, maps user data to the pathway, and\nrender pathway graph with the mapped data. In addition, Pathview also\nseamlessly integrates with pathway and gene set (enrichment) analysis\ntools for large-scale and fully automated analysis.\n", "version": [ { "repositories": [ { "commit": "fc560ed15ef7393a73d35e714716cc24dc835339", "type": "git", "url": "https://git.bioconductor.org/packages/pathview" } ], "version": "1.16.7" }, { "repositories": [ { "commit": "d2048981696564ec75f661ed665977d3a6e09188", "type": "git", "url": "https://git.bioconductor.org/packages/pathview" } ], "version": "1.18.2" }, { "repositories": [ { "commit": "a195afa6ba6c7917af2c7f77170f0644c46880c7", "type": "git", "url": "https://git.bioconductor.org/packages/pathview" } ], "version": "1.20.0" }, { "repositories": [ { "commit": "ff86f9e166a5b03bbed1a0ad276778958c3045ce", "type": "git", "url": "https://git.bioconductor.org/packages/pathview" } ], "version": "1.22.3" }, { "repositories": [ { "commit": "e4401c1425c980ce2e6e478a4602a9f6d36ccd8d", "type": "git", "url": "https://git.bioconductor.org/packages/pathview" } ], "version": "1.24.0" }, { "repositories": [ { "commit": "a6a32395db408798cb076894678e90148bae6bf4", "type": "git", "url": "https://git.bioconductor.org/packages/pathview" } ], "version": "1.30.1" }, { "repositories": [ { "commit": "a8788902a3bb047f8ee785966e57f84596076bbd", "type": "git", "url": "https://git.bioconductor.org/packages/pathview" } ], "version": "1.34.0" }, { "repositories": [ { "commit": "4f6be090a4089b5259d8e796d62f9830e2d63943", "type": "git", "url": "https://git.bioconductor.org/packages/pathview" } ], "version": "1.36.0" }, { "repositories": [ { "commit": "f2e86b106c1cd91aac703337f968b7593a61c68d", "type": "git", "url": "https://git.bioconductor.org/packages/pathview" } ], "version": "1.36.1" }, { "repositories": [ { "commit": "8229376ffd45278b74a6e4ccfb3abea8992667f7", "type": "git", "url": "https://git.bioconductor.org/packages/pathview" } ], "version": "1.38.0" }, { "repositories": [ { "commit": "6546c6139f797bdff2fcc0645030a5de3588f2eb", "type": "git", "url": "https://git.bioconductor.org/packages/pathview" } ], "version": "1.40.0" } ] }, "r-pbapply": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pbapply_1.7-2.tar.gz", "https://cloud.r-project.org/src/contrib/pbapply_1.7-0.tar.gz", "https://cloud.r-project.org/src/contrib/pbapply_1.5-0.tar.gz", "https://cloud.r-project.org/src/contrib/pbapply_1.4-3.tar.gz", "https://cloud.r-project.org/src/contrib/pbapply_1.4-1.tar.gz", "https://cloud.r-project.org/src/contrib/pbapply_1.3-4.tar.gz", "https://cloud.r-project.org/src/contrib/pbapply_1.3-3.tar.gz", "https://cloud.r-project.org/src/contrib/pbapply_1.3-2.tar.gz", "https://cloud.r-project.org/src/contrib/pbapply_1.3-1.tar.gz", "https://cloud.r-project.org/src/contrib/pbapply_1.3-0.tar.gz", "https://cloud.r-project.org/src/contrib/pbapply_1.2-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pbapply" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-pbapply", "patches": [], "summary": "Adding Progress Bar to '*apply' Functions. A lightweight package that\nadds progress bar to vectorized R functions ('*apply'). The\nimplementation can easily be added to functions where showing the\nprogress is useful (e.g. bootstrap). The type and style of the progress\nbar (with percentages or remaining time) can be set through options.\nSupports several parallel processing backends.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pbapply_1.2-2.tar.gz" ], "version": "1.2-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbapply_1.3-0.tar.gz" ], "version": "1.3-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbapply_1.3-1.tar.gz" ], "version": "1.3-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbapply_1.3-2.tar.gz" ], "version": "1.3-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbapply_1.3-3.tar.gz" ], "version": "1.3-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbapply_1.3-4.tar.gz" ], "version": "1.3-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbapply_1.4-1.tar.gz" ], "version": "1.4-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbapply_1.4-3.tar.gz" ], "version": "1.4-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbapply_1.5-0.tar.gz" ], "version": "1.5-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbapply_1.7-0.tar.gz" ], "version": "1.7-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbapply_1.7-2.tar.gz" ], "version": "1.7-2" } ] }, "r-pbdzmq": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "libzmq", "r", "r-r6" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pbdZMQ_0.3-14.tar.gz", "https://cloud.r-project.org/src/contrib/pbdZMQ_0.3-11.tar.gz", "https://cloud.r-project.org/src/contrib/pbdZMQ_0.3-9.tar.gz", "https://cloud.r-project.org/src/contrib/pbdZMQ_0.3-8.tar.gz", "https://cloud.r-project.org/src/contrib/pbdZMQ_0.3-7.tar.gz", "https://cloud.r-project.org/src/contrib/pbdZMQ_0.3-6.tar.gz", "https://cloud.r-project.org/src/contrib/pbdZMQ_0.3-4.tar.gz", "https://cloud.r-project.org/src/contrib/pbdZMQ_0.3-3.tar.gz", "https://cloud.r-project.org/src/contrib/pbdZMQ_0.3-2.tar.gz", "https://cloud.r-project.org/src/contrib/pbdZMQ_0.2-4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pbdZMQ" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-pbdzmq", "patches": [], "summary": "Programming with Big Data -- Interface to 'ZeroMQ'. 'ZeroMQ' is a well-\nknown library for high-performance asynchronous messaging in scalable,\ndistributed applications. This package provides high level R wrapper\nfunctions to easily utilize 'ZeroMQ'. We mainly focus on interactive\nclient/server programming frameworks. For convenience, a minimal\n'ZeroMQ' library (4.1.0 rc1) is shipped with 'pbdZMQ', which can be used\nif no system installation of 'ZeroMQ' is available. A few wrapper\nfunctions compatible with 'rzmq' are also provided.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pbdZMQ_0.2-4.tar.gz" ], "version": "0.2-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbdZMQ_0.3-11.tar.gz" ], "version": "0.3-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbdZMQ_0.3-14.tar.gz" ], "version": "0.3-14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbdZMQ_0.3-2.tar.gz" ], "version": "0.3-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbdZMQ_0.3-3.tar.gz" ], "version": "0.3-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbdZMQ_0.3-4.tar.gz" ], "version": "0.3-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbdZMQ_0.3-6.tar.gz" ], "version": "0.3-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbdZMQ_0.3-7.tar.gz" ], "version": "0.3-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbdZMQ_0.3-8.tar.gz" ], "version": "0.3-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbdZMQ_0.3-9.tar.gz" ], "version": "0.3-9" } ] }, "r-pbivnorm": { "alias": [], "categories": [], "dependencies": [ "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pbivnorm_0.6.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pbivnorm" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-pbivnorm", "patches": [], "summary": "Vectorized Bivariate Normal CDF. Provides a vectorized R function for\ncalculating probabilities from a standard bivariate normal CDF.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pbivnorm_0.6.0.tar.gz" ], "version": "0.6.0" } ] }, "r-pbkrtest": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-broom", "r-doby", "r-dplyr", "r-knitr", "r-lme4", "r-magrittr", "r-mass", "r-matrix", "r-numderiv" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pbkrtest_0.5.3.tar.gz", "https://cloud.r-project.org/src/contrib/pbkrtest_0.5.2.tar.gz", "https://cloud.r-project.org/src/contrib/pbkrtest_0.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/pbkrtest_0.5-0.1.tar.gz", "https://cloud.r-project.org/src/contrib/pbkrtest_0.4-7.tar.gz", "https://cloud.r-project.org/src/contrib/pbkrtest_0.4-6.tar.gz", "https://cloud.r-project.org/src/contrib/pbkrtest_0.4-4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pbkrtest" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-pbkrtest", "patches": [], "summary": "Parametric Bootstrap, Kenward-Roger and Satterthwaite Based Methods for\nTest in Mixed Models. Test in mixed effects models. Attention is on\nmixed effects models as implemented in the 'lme4' package. For linear\nmixed models, this package implements (1) a parametric bootstrap test,\n(2) a Kenward-Roger-typ modification of F-tests for linear mixed effects\nmodels and (3) a Satterthwaite-type modification of F-tests for linear\nmixed effects models. The package also implements a parametric bootstrap\ntest for generalized linear mixed models. The facilities of the package\nare documented in the paper by Halehoh and Hojsgaard, (2012,\n). Please see 'citation(\"pbkrtest\")' for\ncitation details.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pbkrtest_0.4-4.tar.gz" ], "version": "0.4-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbkrtest_0.4-6.tar.gz" ], "version": "0.4-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbkrtest_0.4-7.tar.gz" ], "version": "0.4-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbkrtest_0.5-0.1.tar.gz" ], "version": "0.5-0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbkrtest_0.5.1.tar.gz" ], "version": "0.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbkrtest_0.5.2.tar.gz" ], "version": "0.5.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pbkrtest_0.5.3.tar.gz" ], "version": "0.5.3" } ] }, "r-pcamethods": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-biobase", "r-biocgenerics", "r-mass", "r-rcpp" ], "downloads": [ "https://git.bioconductor.org/packages/pcaMethods" ], "homepages": [ "https://bioconductor.org/packages/pcaMethods" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-pcamethods", "patches": [], "summary": "A collection of PCA methods. Provides Bayesian PCA, Probabilistic PCA,\nNipals PCA, Inverse Non-Linear PCA and the conventional SVD PCA. A\ncluster based method for missing value estimation is included for\ncomparison. BPCA, PPCA and NipalsPCA may be used to perform PCA on\nincomplete data as well as for accurate missing value estimation. A set\nof methods for printing and plotting the results is also provided. All\nPCA methods make use of the same data structure (pcaRes) to provide a\ncommon interface to the PCA results. Initiated at the Max-Planck\nInstitute for Molecular Plant Physiology, Golm, Germany.\n", "version": [ { "repositories": [ { "commit": "c8d7c93dcaf7ef728f3d089ae5d55771b320bdab", "type": "git", "url": "https://git.bioconductor.org/packages/pcaMethods" } ], "version": "1.68.0" }, { "repositories": [ { "commit": "3368fad48ea930775505fd26e4179d7714d633d8", "type": "git", "url": "https://git.bioconductor.org/packages/pcaMethods" } ], "version": "1.70.0" }, { "repositories": [ { "commit": "1bb8c7d056645e62ee5179f6bb30b6594ebf3bfd", "type": "git", "url": "https://git.bioconductor.org/packages/pcaMethods" } ], "version": "1.72.0" }, { "repositories": [ { "commit": "1b8f0a5cdfe3664119d0d7e926a2e0fe7320133c", "type": "git", "url": "https://git.bioconductor.org/packages/pcaMethods" } ], "version": "1.74.0" }, { "repositories": [ { "commit": "5db995330ced37dfd5ddad6ad1d90b4815d3127a", "type": "git", "url": "https://git.bioconductor.org/packages/pcaMethods" } ], "version": "1.76.0" }, { "repositories": [ { "commit": "d500b3363308f1f8ca70625c5cd10cce59b27641", "type": "git", "url": "https://git.bioconductor.org/packages/pcaMethods" } ], "version": "1.82.0" }, { "repositories": [ { "commit": "9419cfa18c18dfbd1e1194127fd120ab456c3657", "type": "git", "url": "https://git.bioconductor.org/packages/pcaMethods" } ], "version": "1.86.0" }, { "repositories": [ { "commit": "02fb58d6fe35579b86fb2ebd2eaf92e6b53444d2", "type": "git", "url": "https://git.bioconductor.org/packages/pcaMethods" } ], "version": "1.88.0" }, { "repositories": [ { "commit": "52474bc6d125122e89834328a1a780988349756f", "type": "git", "url": "https://git.bioconductor.org/packages/pcaMethods" } ], "version": "1.90.0" }, { "repositories": [ { "commit": "ecbbc5b96b8fa79342611af8f798dd43c36d6699", "type": "git", "url": "https://git.bioconductor.org/packages/pcaMethods" } ], "version": "1.92.0" } ] }, "r-pcapp": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-mvtnorm" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pcaPP_2.0-5.tar.gz", "https://cloud.r-project.org/src/contrib/pcaPP_2.0-3.tar.gz", "https://cloud.r-project.org/src/contrib/pcaPP_2.0-2.tar.gz", "https://cloud.r-project.org/src/contrib/pcaPP_2.0-1.tar.gz", "https://cloud.r-project.org/src/contrib/pcaPP_1.9-74.tar.gz", "https://cloud.r-project.org/src/contrib/pcaPP_1.9-73.tar.gz", "https://cloud.r-project.org/src/contrib/pcaPP_1.9-72.1.tar.gz", "https://cloud.r-project.org/src/contrib/pcaPP_1.9-72.tar.gz", "https://cloud.r-project.org/src/contrib/pcaPP_1.9-70.tar.gz", "https://cloud.r-project.org/src/contrib/pcaPP_1.9-61.tar.gz", "https://cloud.r-project.org/src/contrib/pcaPP_1.9-60.tar.gz", "https://cloud.r-project.org/src/contrib/pcaPP_1.9-50.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pcaPP" ], "licenses": [], "maintainers": [], "name": "r-pcapp", "patches": [], "summary": "Provides functions for robust PCA by projection pursuit. Provides\nfunctions for robust PCA by projection pursuit. The methods are\ndescribed in Croux et al. (2006) , Croux et al.\n(2013) , Todorov and Filzmoser (2013)\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pcaPP_1.9-50.tar.gz" ], "version": "1.9-50" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pcaPP_1.9-60.tar.gz" ], "version": "1.9-60" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pcaPP_1.9-61.tar.gz" ], "version": "1.9-61" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pcaPP_1.9-70.tar.gz" ], "version": "1.9-70" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pcaPP_1.9-72.tar.gz" ], "version": "1.9-72" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pcaPP_1.9-72.1.tar.gz" ], "version": "1.9-72.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pcaPP_1.9-73.tar.gz" ], "version": "1.9-73" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pcaPP_1.9-74.tar.gz" ], "version": "1.9-74" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pcaPP_2.0-1.tar.gz" ], "version": "2.0-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pcaPP_2.0-2.tar.gz" ], "version": "2.0-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pcaPP_2.0-3.tar.gz" ], "version": "2.0-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pcaPP_2.0-5.tar.gz" ], "version": "2.0-5" } ] }, "r-pegas": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-adegenet", "r-ape" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pegas_1.3.tar.gz", "https://cloud.r-project.org/src/contrib/pegas_1.2.tar.gz", "https://cloud.r-project.org/src/contrib/pegas_1.1.tar.gz", "https://cloud.r-project.org/src/contrib/pegas_0.14.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pegas" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [ "dorton21" ], "name": "r-pegas", "patches": [], "summary": "Population and Evolutionary Genetics Analysis System. Functions for\nreading, writing, plotting, analysing, and manipulating allelic and\nhaplotypic data, including from VCF files, and for the analysis of\npopulation nucleotide sequences and micro-satellites including\ncoalescent analyses, linkage disequilibrium, population structure (Fst,\nAmova) and equilibrium (HWE), haplotype networks, minimum spanning tree\nand network, and median-joining networks.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pegas_0.14.tar.gz" ], "version": "0.14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pegas_1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pegas_1.2.tar.gz" ], "version": "1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pegas_1.3.tar.gz" ], "version": "1.3" } ] }, "r-permute": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/permute_0.9-7.tar.gz", "https://cloud.r-project.org/src/contrib/permute_0.9-5.tar.gz", "https://cloud.r-project.org/src/contrib/permute_0.9-4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=permute" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-permute", "patches": [], "summary": "Functions for Generating Restricted Permutations of Data. A set of\nrestricted permutation designs for freely exchangeable, line transects\n(time series), and spatial grid designs plus permutation of blocks\n(groups of samples) is provided. 'permute' also allows split-plot\ndesigns, in which the whole-plots or split-plots or both can be freely-\nexchangeable or one of the restricted designs. The 'permute' package is\nmodelled after the permutation schemes of 'Canoco 3.1' (and later) by\nCajo ter Braak.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/permute_0.9-4.tar.gz" ], "version": "0.9-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/permute_0.9-5.tar.gz" ], "version": "0.9-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/permute_0.9-7.tar.gz" ], "version": "0.9-7" } ] }, "r-pfam-db": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotationdbi" ], "downloads": [ "https://bioconductor.org/packages/3.17/data/annotation/src/contrib/PFAM.db_3.17.0.tar.gz", "https://bioconductor.org/packages/3.16/data/annotation/src/contrib/PFAM.db_3.16.0.tar.gz", "https://bioconductor.org/packages/3.15/data/annotation/src/contrib/PFAM.db_3.15.0.tar.gz", "https://bioconductor.org/packages/3.14/data/annotation/src/contrib/PFAM.db_3.14.0.tar.gz", "https://bioconductor.org/packages/3.12/data/annotation/src/contrib/PFAM.db_3.12.0.tar.gz", "https://bioconductor.org/packages/3.10/data/annotation/src/contrib/PFAM.db_3.10.0.tar.gz", "https://bioconductor.org/packages/3.5/data/annotation/src/contrib/PFAM.db_3.4.1.tar.gz", "https://git.bioconductor.org/packages/PFAM.db" ], "homepages": [ "https://bioconductor.org/packages/PFAM.db" ], "licenses": [], "maintainers": [], "name": "r-pfam-db", "patches": [], "summary": "A set of protein ID mappings for PFAM. A set of protein ID mappings for\nPFAM assembled using data from public repositories.\n", "version": [ { "downloads": [ "https://bioconductor.org/packages/3.10/data/annotation/src/contrib/PFAM.db_3.10.0.tar.gz" ], "version": "3.10.0" }, { "downloads": [ "https://bioconductor.org/packages/3.12/data/annotation/src/contrib/PFAM.db_3.12.0.tar.gz" ], "version": "3.12.0" }, { "downloads": [ "https://bioconductor.org/packages/3.14/data/annotation/src/contrib/PFAM.db_3.14.0.tar.gz" ], "version": "3.14.0" }, { "downloads": [ "https://bioconductor.org/packages/3.15/data/annotation/src/contrib/PFAM.db_3.15.0.tar.gz" ], "version": "3.15.0" }, { "downloads": [ "https://bioconductor.org/packages/3.16/data/annotation/src/contrib/PFAM.db_3.16.0.tar.gz" ], "version": "3.16.0" }, { "downloads": [ "https://bioconductor.org/packages/3.17/data/annotation/src/contrib/PFAM.db_3.17.0.tar.gz" ], "version": "3.17.0" }, { "downloads": [ "https://bioconductor.org/packages/3.5/data/annotation/src/contrib/PFAM.db_3.4.1.tar.gz" ], "version": "3.4.1" } ] }, "r-phangorn": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-ape", "r-digest", "r-fastmatch", "r-generics", "r-igraph", "r-magrittr", "r-matrix", "r-quadprog", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/phangorn_2.11.1.tar.gz", "https://cloud.r-project.org/src/contrib/phangorn_2.10.0.tar.gz", "https://cloud.r-project.org/src/contrib/phangorn_2.8.1.tar.gz", "https://cloud.r-project.org/src/contrib/phangorn_2.5.5.tar.gz", "https://cloud.r-project.org/src/contrib/phangorn_2.5.3.tar.gz", "https://cloud.r-project.org/src/contrib/phangorn_2.3.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=phangorn" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-phangorn", "patches": [], "summary": "Phylogenetic Reconstruction and Analysis. Allows for estimation of\nphylogenetic trees and networks using Maximum Likelihood, Maximum\nParsimony, distance methods and Hadamard conjugation. Offers methods for\ntree comparison, model selection and visualization of phylogenetic\nnetworks as described in Schliep et al. (2017)\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/phangorn_2.10.0.tar.gz" ], "version": "2.10.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/phangorn_2.11.1.tar.gz" ], "version": "2.11.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/phangorn_2.3.1.tar.gz" ], "version": "2.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/phangorn_2.5.3.tar.gz" ], "version": "2.5.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/phangorn_2.5.5.tar.gz" ], "version": "2.5.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/phangorn_2.8.1.tar.gz" ], "version": "2.8.1" } ] }, "r-phantompeakqualtools": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "cxx", "gmake", "r", "r-bitops", "r-catools", "r-rsamtools", "r-snow", "r-snowfall" ], "downloads": [ "https://github.com/kundajelab/phantompeakqualtools/raw/master/spp_1.14.tar.gz", null ], "homepages": [ "https://github.com/kundajelab/phantompeakqualtools" ], "licenses": [], "maintainers": [], "name": "r-phantompeakqualtools", "patches": [], "summary": "Computes informative enrichment and quality measures for ChIP-seq/DNase-\nseq/FAIRE-seq/MNase-seq data. This is a modified version of r-spp to be\nused in conjunction with the phantompeakqualtools package.\n", "version": [ { "downloads": [ "https://github.com/kundajelab/phantompeakqualtools/raw/master/spp_1.14.tar.gz" ], "version": "1.14" } ] }, "r-pheatmap": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-gtable", "r-rcolorbrewer", "r-scales" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pheatmap_1.0.12.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pheatmap" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-pheatmap", "patches": [], "summary": "Pretty Heatmaps. Implementation of heatmaps that offers more control\nover dimensions and appearance.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pheatmap_1.0.12.tar.gz" ], "version": "1.0.12" } ] }, "r-philentropy": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-dplyr", "r-kernsmooth", "r-poorman", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/philentropy_0.8.0.tar.gz", "https://cloud.r-project.org/src/contrib/philentropy_0.7.0.tar.gz", "https://cloud.r-project.org/src/contrib/philentropy_0.6.0.tar.gz", "https://cloud.r-project.org/src/contrib/philentropy_0.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/philentropy_0.4.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=philentropy" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-philentropy", "patches": [], "summary": "Similarity and Distance Quantification Between Probability Functions.\nComputes 46 optimized distance and similarity measures for comparing\nprobability functions (Drost (2018) ). These\ncomparisons between probability functions have their foundations in a\nbroad range of scientific disciplines from mathematics to ecology. The\naim of this package is to provide a core framework for clustering,\nclassification, statistical inference, goodness-of-fit, non-parametric\nstatistics, information theory, and machine learning tasks that are\nbased on comparing univariate or multivariate probability functions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/philentropy_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/philentropy_0.5.0.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/philentropy_0.6.0.tar.gz" ], "version": "0.6.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/philentropy_0.7.0.tar.gz" ], "version": "0.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/philentropy_0.8.0.tar.gz" ], "version": "0.8.0" } ] }, "r-phylobase": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-ade4", "r-ape", "r-rcpp", "r-rncl", "r-rnexml" ], "downloads": [ "https://cloud.r-project.org/src/contrib/phylobase_0.8.12.tar.gz", "https://cloud.r-project.org/src/contrib/phylobase_0.8.10.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=phylobase" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-phylobase", "patches": [], "summary": "Base Package for Phylogenetic Structures and Comparative Data. Provides\na base S4 class for comparative methods, incorporating one or more trees\nand trait data.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/phylobase_0.8.10.tar.gz" ], "version": "0.8.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/phylobase_0.8.12.tar.gz" ], "version": "0.8.12" } ] }, "r-phyloseq": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ade4", "r-ape", "r-biobase", "r-biocgenerics", "r-biomformat", "r-biostrings", "r-cluster", "r-data-table", "r-foreach", "r-ggplot2", "r-igraph", "r-multtest", "r-plyr", "r-reshape2", "r-scales", "r-vegan" ], "downloads": [ "https://git.bioconductor.org/packages/phyloseq" ], "homepages": [ "https://bioconductor.org/packages/phyloseq" ], "licenses": [ "LiLiQ-R-1.1" ], "maintainers": [], "name": "r-phyloseq", "patches": [], "summary": "Handling and analysis of high-throughput microbiome census data.\nphyloseq provides a set of classes and tools to facilitate the import,\nstorage, analysis, and graphical display of microbiome census data.\n", "version": [ { "repositories": [ { "commit": "107d1d5e3437a6e33982c06a548d3cc91df2a7e0", "type": "git", "url": "https://git.bioconductor.org/packages/phyloseq" } ], "version": "1.20.0" }, { "repositories": [ { "commit": "c695323f2963636d16acda9f05a583bd58e31344", "type": "git", "url": "https://git.bioconductor.org/packages/phyloseq" } ], "version": "1.22.3" }, { "repositories": [ { "commit": "829992f88c79de48bb8749678624e2bbd3b66645", "type": "git", "url": "https://git.bioconductor.org/packages/phyloseq" } ], "version": "1.24.2" }, { "repositories": [ { "commit": "a084072bc9e057b90adfbd59e27db2a1ecee151c", "type": "git", "url": "https://git.bioconductor.org/packages/phyloseq" } ], "version": "1.26.1" }, { "repositories": [ { "commit": "a86ed1e0a650fdf80bee5a0a5a82aaa5a276178d", "type": "git", "url": "https://git.bioconductor.org/packages/phyloseq" } ], "version": "1.28.0" }, { "repositories": [ { "commit": "cbed93ead5528fe9024d646c597dab9fc95952d3", "type": "git", "url": "https://git.bioconductor.org/packages/phyloseq" } ], "version": "1.34.0" }, { "repositories": [ { "commit": "1e2409a6ed3c23e308275098c2dc9fdba9d5e5f6", "type": "git", "url": "https://git.bioconductor.org/packages/phyloseq" } ], "version": "1.38.0" }, { "repositories": [ { "commit": "20bb27d5e6e0d4368978a15671b829990b1f4568", "type": "git", "url": "https://git.bioconductor.org/packages/phyloseq" } ], "version": "1.40.0" }, { "repositories": [ { "commit": "de6be71fe9902bdfe7791163acb7b67d238424dc", "type": "git", "url": "https://git.bioconductor.org/packages/phyloseq" } ], "version": "1.42.0" }, { "repositories": [ { "commit": "03b74f7d7aa866f5f9a84c7368da57b7a168967e", "type": "git", "url": "https://git.bioconductor.org/packages/phyloseq" } ], "version": "1.44.0" } ] }, "r-phylostratr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ape", "r-biostrings", "r-curl", "r-dplyr", "r-ggplot2", "r-glue", "r-gridextra", "r-magrittr", "r-purrr", "r-readr", "r-reshape2", "r-rhmmer", "r-rlang", "r-scales", "r-taxizedb", "r-tibble", "r-tidyr" ], "downloads": [ "https://github.com/arendsee/phylostratr.git" ], "homepages": [ "https://github.com/arenasee/phylostratr" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-phylostratr", "patches": [], "summary": "Predict and explore the age of genes using phylostratigraphic methods\n", "version": [ { "repositories": [ { "commit": "9f6d1ee2e93d973dabcfc72a44af9a032cb7ebbd", "type": "git", "url": "https://github.com/arendsee/phylostratr.git" } ], "version": "20190323" } ] }, "r-phytools": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-animation", "r-ape", "r-clustergeneration", "r-coda", "r-combinat", "r-deoptim", "r-doparallel", "r-expm", "r-foreach", "r-gtools", "r-maps", "r-mass", "r-mnormt", "r-nlme", "r-numderiv", "r-optimparallel", "r-phangorn", "r-plotrix", "r-scatterplot3d" ], "downloads": [ "https://cloud.r-project.org/src/contrib/phytools_2.3-0.tar.gz", "https://cloud.r-project.org/src/contrib/phytools_1.5-1.tar.gz", "https://cloud.r-project.org/src/contrib/phytools_1.2-0.tar.gz", "https://cloud.r-project.org/src/contrib/phytools_1.0-3.tar.gz", "https://cloud.r-project.org/src/contrib/phytools_1.0-1.tar.gz", "https://cloud.r-project.org/src/contrib/phytools_0.7-70.tar.gz", "https://cloud.r-project.org/src/contrib/phytools_0.6-99.tar.gz", "https://cloud.r-project.org/src/contrib/phytools_0.6-60.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=phytools" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-phytools", "patches": [], "summary": "Phylogenetic Tools for Comparative Biology (and Other Things). A wide\nrange of functions for phylogenetic analysis. Functionality is\nconcentrated in phylogenetic comparative biology, but also includes\nnumerous methods for visualizing, manipulating, reading or writing, and\neven inferring phylogenetic trees and data. Included among the functions\nin phylogenetic comparative biology are various for ancestral state\nreconstruction, model-fitting, simulation of phylogenies and data, and\nmultivariate analysis. There are a broad range of plotting methods for\nphylogenies and comparative data which include, but are not restricted\nto, methods for mapping trait evolution on trees, for projecting trees\ninto phenotypic space or a geographic map, and for visualizing\ncorrelated speciation between trees. Finally, there are a number of\nfunctions for reading, writing, analyzing, inferring, simulating, and\nmanipulating phylogenetic trees and comparative data not covered by\nother packages. For instance, there are functions for randomly or non-\nrandomly attaching species or clades to a phylogeny, for estimating\nsupertrees or consensus phylogenies from a set, for simulating trees and\nphylogenetic data under a range of models, and for a wide variety of\nother manipulations and analyses that phylogenetic biologists might find\nuseful in their research.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/phytools_0.6-60.tar.gz" ], "version": "0.6-60" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/phytools_0.6-99.tar.gz" ], "version": "0.6-99" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/phytools_0.7-70.tar.gz" ], "version": "0.7-70" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/phytools_1.0-1.tar.gz" ], "version": "1.0-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/phytools_1.0-3.tar.gz" ], "version": "1.0-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/phytools_1.2-0.tar.gz" ], "version": "1.2-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/phytools_1.5-1.tar.gz" ], "version": "1.5-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/phytools_2.3-0.tar.gz" ], "version": "2.3-0" } ] }, "r-picante": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-ape", "r-nlme", "r-vegan" ], "downloads": [ "https://cloud.r-project.org/src/contrib/picante_1.8.2.tar.gz", "https://cloud.r-project.org/src/contrib/picante_1.8.tar.gz", "https://cloud.r-project.org/src/contrib/picante_1.7.tar.gz", "https://cloud.r-project.org/src/contrib/picante_1.6-2.tar.gz", "https://cloud.r-project.org/src/contrib/picante_1.6-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=picante" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-picante", "patches": [], "summary": "R tools for integrating phylogenies and ecology. Functions for phylocom\nintegration, community analyses, null-models, traits and evolution.\nImplements numerous ecophylogenetic approaches including measures of\ncommunity phylogenetic and trait diversity, phylogenetic signal,\nestimation of trait values for unobserved taxa, null models for\ncommunity and phylogeny randomizations, and utility functions for data\ninput/output and phylogeny plotting. A full description of package\nfunctionality and methods are provided by Kembel et al. (2010)\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/picante_1.6-1.tar.gz" ], "version": "1.6-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/picante_1.6-2.tar.gz" ], "version": "1.6-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/picante_1.7.tar.gz" ], "version": "1.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/picante_1.8.tar.gz" ], "version": "1.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/picante_1.8.2.tar.gz" ], "version": "1.8.2" } ] }, "r-piggyback": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-clisymbols", "r-crayon", "r-fs", "r-gh", "r-git2r", "r-glue", "r-httr", "r-jsonlite", "r-lubridate", "r-magrittr", "r-memoise", "r-usethis" ], "downloads": [ "https://cloud.r-project.org/src/contrib/piggyback_0.1.5.tar.gz", "https://cloud.r-project.org/src/contrib/piggyback_0.1.4.tar.gz", "https://cloud.r-project.org/src/contrib/piggyback_0.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/piggyback_0.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/piggyback_0.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/piggyback_0.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/piggyback_0.0.11.tar.gz", "https://cloud.r-project.org/src/contrib/piggyback_0.0.10.tar.gz", "https://cloud.r-project.org/src/contrib/piggyback_0.0.9.tar.gz", "https://cloud.r-project.org/src/contrib/piggyback_0.0.8.tar.gz", "https://cloud.r-project.org/src/contrib/piggyback_0.0.7.tar.gz", null ], "homepages": [ "https://github.com/ropensci/piggyback" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [ "jgaeb" ], "name": "r-piggyback", "patches": [], "summary": "Managing Larger Data on a GitHub Repository Because larger (> 50 MB)\ndata files cannot easily be committed to git, a different approach is\nrequired to manage data associated with an analysis in a GitHub\nrepository. This package provides a simple work-around by allowing\nlarger (up to 2 GB) data files to piggyback on a repository as assets\nattached to individual GitHub releases. These files are not handled by\ngit in any way, but instead are uploaded, downloaded, or edited directly\nby calls through the GitHub API. These data files can be versioned\nmanually by creating different releases. This approach works equally\nwell with public or private repositories. Data can be uploaded and\ndownloaded programmatically from scripts. No authentication is required\nto download data from public repositories.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/piggyback_0.0.10.tar.gz" ], "version": "0.0.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/piggyback_0.0.11.tar.gz" ], "version": "0.0.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/piggyback_0.0.7.tar.gz" ], "version": "0.0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/piggyback_0.0.8.tar.gz" ], "version": "0.0.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/piggyback_0.0.9.tar.gz" ], "version": "0.0.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/piggyback_0.1.0.tar.gz" ], "version": "0.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/piggyback_0.1.1.tar.gz" ], "version": "0.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/piggyback_0.1.2.tar.gz" ], "version": "0.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/piggyback_0.1.3.tar.gz" ], "version": "0.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/piggyback_0.1.4.tar.gz" ], "version": "0.1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/piggyback_0.1.5.tar.gz" ], "version": "0.1.5" } ] }, "r-pillar": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-crayon", "r-ellipsis", "r-fansi", "r-glue", "r-lifecycle", "r-rlang", "r-utf8", "r-vctrs" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pillar_1.9.0.tar.gz", "https://cloud.r-project.org/src/contrib/pillar_1.8.1.tar.gz", "https://cloud.r-project.org/src/contrib/pillar_1.7.0.tar.gz", "https://cloud.r-project.org/src/contrib/pillar_1.6.5.tar.gz", "https://cloud.r-project.org/src/contrib/pillar_1.6.4.tar.gz", "https://cloud.r-project.org/src/contrib/pillar_1.4.7.tar.gz", "https://cloud.r-project.org/src/contrib/pillar_1.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/pillar_1.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/pillar_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/pillar_1.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/pillar_1.2.3.tar.gz", "https://cloud.r-project.org/src/contrib/pillar_1.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/pillar_1.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/pillar_1.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/pillar_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/pillar_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/pillar_1.0.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pillar" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-pillar", "patches": [], "summary": "Coloured Formatting for Columns. Provides a 'pillar' generic designed\nfor formatting columns of data using the full range of colours provided\nby modern terminals.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pillar_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pillar_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pillar_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pillar_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pillar_1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pillar_1.2.2.tar.gz" ], "version": "1.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pillar_1.2.3.tar.gz" ], "version": "1.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pillar_1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pillar_1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pillar_1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pillar_1.4.2.tar.gz" ], "version": "1.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pillar_1.4.7.tar.gz" ], "version": "1.4.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pillar_1.6.4.tar.gz" ], "version": "1.6.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pillar_1.6.5.tar.gz" ], "version": "1.6.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pillar_1.7.0.tar.gz" ], "version": "1.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pillar_1.8.1.tar.gz" ], "version": "1.8.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pillar_1.9.0.tar.gz" ], "version": "1.9.0" } ] }, "r-pinfsc50": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pinfsc50_1.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/pinfsc50_1.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pinfsc50" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [ "dorton21" ], "name": "r-pinfsc50", "patches": [], "summary": "Sequence ('FASTA'), Annotation ('GFF') and Variants ('VCF') for 17\nSamples of 'P. Infestans\" and 1 'P. Mirabilis'. Genomic data for the\nplant pathogen \"Phytophthora infestans.\" It includes a variant file\n('VCF'), a sequence file ('FASTA') and an annotation file ('GFF'). This\npackage is intended to be used as example data for packages that work\nwith genomic data.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pinfsc50_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pinfsc50_1.3.0.tar.gz" ], "version": "1.3.0" } ] }, "r-pixmap": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pixmap_0.4-13.tar.gz", "https://cloud.r-project.org/src/contrib/pixmap_0.4-12.tar.gz", "https://cloud.r-project.org/src/contrib/pixmap_0.4-11.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pixmap" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-pixmap", "patches": [], "summary": "Bitmap Images (\"Pixel Maps\"). Functions for import, export, plotting and\nother manipulations of bitmapped images.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pixmap_0.4-11.tar.gz" ], "version": "0.4-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pixmap_0.4-12.tar.gz" ], "version": "0.4-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pixmap_0.4-13.tar.gz" ], "version": "0.4-13" } ] }, "r-pkgbuild": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-callr", "r-cli", "r-crayon", "r-desc", "r-prettyunits", "r-processx", "r-r6", "r-rprojroot", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pkgbuild_1.4.4.tar.gz", "https://cloud.r-project.org/src/contrib/pkgbuild_1.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/pkgbuild_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/pkgbuild_1.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/pkgbuild_1.0.8.tar.gz", "https://cloud.r-project.org/src/contrib/pkgbuild_1.0.4.tar.gz", "https://cloud.r-project.org/src/contrib/pkgbuild_1.0.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pkgbuild" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-pkgbuild", "patches": [], "summary": "Find Tools Needed to Build R Packages. Provides functions used to build\nR packages. Locates compilers needed to build R packages on various\nplatforms and ensures the PATH is configured appropriately so R can use\nthem.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgbuild_1.0.3.tar.gz" ], "version": "1.0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgbuild_1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgbuild_1.0.8.tar.gz" ], "version": "1.0.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgbuild_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgbuild_1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgbuild_1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgbuild_1.4.4.tar.gz" ], "version": "1.4.4" } ] }, "r-pkgcache": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-assertthat", "r-callr", "r-cli", "r-curl", "r-digest", "r-filelock", "r-glue", "r-jsonlite", "r-prettyunits", "r-processx", "r-r6", "r-rappdirs", "r-rlang", "r-tibble", "r-uuid" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pkgcache_2.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/pkgcache_2.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/pkgcache_2.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/pkgcache_2.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/pkgcache_2.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/pkgcache_1.3.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pkgcache" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-pkgcache", "patches": [], "summary": "Cache 'CRAN'-Like Metadata and R Packages. Metadata and package cache\nfor CRAN-like repositories. 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Set configuration options on a\nper-package basis. Options set by a given package only apply to that\npackage, other packages are unaffected.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgconfig_2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgconfig_2.0.2.tar.gz" ], "version": "2.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgconfig_2.0.3.tar.gz" ], "version": "2.0.3" } ] }, "r-pkgdepends": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-callr", "r-cli", "r-crayon", "r-curl", "r-desc", "r-filelock", "r-glue", "r-jsonlite", "r-lpsolve", "r-pkgbuild", "r-pkgcache", "r-prettyunits", "r-processx", "r-ps", "r-r6", "r-rematch2", "r-rprojroot", "r-tibble", "r-withr", "r-zip" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pkgdepends_0.7.2.tar.gz", "https://cloud.r-project.org/src/contrib/pkgdepends_0.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/pkgdepends_0.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/pkgdepends_0.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/pkgdepends_0.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pkgdepends" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-pkgdepends", "patches": [], "summary": "Package Dependency Resolution and Downloads. Find recursive dependencies\nof 'R' packages from various sources. Solve the dependencies to obtain a\nconsistent set of packages to install. Download packages, and install\nthem. It supports packages on 'CRAN', 'Bioconductor' and other 'CRAN-\nlike' repositories, 'GitHub', package 'URLs', and local package trees\nand files. It caches metadata and package files via the 'pkgcache'\npackage, and performs all 'HTTP' requests, downloads, builds and\ninstallations in parallel. 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Generate an attractive and\nuseful website from a source package. 'pkgdown' converts your\ndocumentation, vignettes, 'README', and more to 'HTML' making it easy to\nshare information about your package online.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgdown_2.0.6.tar.gz" ], "version": "2.0.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgdown_2.0.7.tar.gz" ], "version": "2.0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgdown_2.1.0.tar.gz" ], "version": "2.1.0" } ] }, "r-pkgload": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-cli", "r-crayon", "r-desc", "r-fs", "r-glue", "r-lifecycle", "r-pkgbuild", "r-processx", "r-rlang", "r-rprojroot", "r-rstudioapi", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pkgload_1.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/pkgload_1.3.4.tar.gz", "https://cloud.r-project.org/src/contrib/pkgload_1.3.3.tar.gz", "https://cloud.r-project.org/src/contrib/pkgload_1.3.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/pkgload_1.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/pkgload_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/pkgload_1.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/pkgload_1.2.4.tar.gz", "https://cloud.r-project.org/src/contrib/pkgload_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/pkgload_1.0.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pkgload" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-pkgload", "patches": [], "summary": "Simulate Package Installation and Attach. Simulates the process of\ninstalling a package and then attaching it. This is a key part of the\n'devtools' package as it allows you to rapidly iterate while developing\na package.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgload_1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgload_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgload_1.2.4.tar.gz" ], "version": "1.2.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgload_1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgload_1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgload_1.3.2.tar.gz" ], "version": "1.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgload_1.3.2.1.tar.gz" ], "version": "1.3.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgload_1.3.3.tar.gz" ], "version": "1.3.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgload_1.3.4.tar.gz" ], "version": "1.3.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgload_1.4.0.tar.gz" ], "version": "1.4.0" } ] }, "r-pkgmaker": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-assertthat", "r-bibtex", "r-codetools", "r-digest", "r-magrittr", "r-registry", "r-stringi", "r-stringr", "r-withr", "r-xtable" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pkgmaker_0.32.10.tar.gz", "https://cloud.r-project.org/src/contrib/pkgmaker_0.32.8.tar.gz", "https://cloud.r-project.org/src/contrib/pkgmaker_0.32.2.tar.gz", "https://cloud.r-project.org/src/contrib/pkgmaker_0.27.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pkgmaker" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-pkgmaker", "patches": [], "summary": "Development Utilities for R Packages. This package provides some low-\nlevel utilities to use for package development. It currently provides\nmanagers for multiple package specific options and registries, vignette,\nunit test and bibtex related utilities. It serves as a base package for\npackages like NMF, RcppOctave, doRNG, and as an incubator package for\nother general purposes utilities, that will eventually be packaged\nseparately. It is still under heavy development and changes in the\ninterface(s) are more than likely to happen.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgmaker_0.27.tar.gz" ], "version": "0.27" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgmaker_0.32.10.tar.gz" ], "version": "0.32.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgmaker_0.32.2.tar.gz" ], "version": "0.32.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pkgmaker_0.32.8.tar.gz" ], "version": "0.32.8" } ] }, "r-pki": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-base64enc" ], "downloads": [ "https://cloud.r-project.org/src/contrib/PKI_0.1-14.tar.gz", null ], "homepages": [ "http://www.rforge.net/PKI" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-pki", "patches": [], "summary": "Public Key Infrastucture functions such as verifying certificates, RSA\nencription and signing which can be used to build PKI infrastructure and\nperform cryptographic tasks.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/PKI_0.1-14.tar.gz" ], "version": "0.1-14" } ] }, "r-pl94171": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-dplyr", "r-httr", "r-readr", "r-sf", "r-stringr", "r-tigris", "r-tinytiger", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/PL94171_1.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/PL94171_1.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/PL94171_1.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/PL94171_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/PL94171_0.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/PL94171_0.2.0.tar.gz", null ], "homepages": [ "https://corymccartan.com/PL94171/" ], "licenses": [], "maintainers": [ "jgaeb" ], "name": "r-pl94171", "patches": [], "summary": "Tabulate P.L. 94-171 Redistricting Data Summary Files Tools to process\nlegacy format summary redistricting data files produced by the United\nStates Census Bureau pursuant to P.L. 94-171. These files are generally\navailable earlier but are difficult to work with as-is.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/PL94171_0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/PL94171_0.3.2.tar.gz" ], "version": "0.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/PL94171_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/PL94171_1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/PL94171_1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/PL94171_1.1.2.tar.gz" ], "version": "1.1.2" } ] }, "r-plogr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/plogr_0.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/plogr_0.1-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=plogr" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-plogr", "patches": [], "summary": "The 'plog' C++ Logging Library. A simple header-only logging library for\nC++. Add 'LinkingTo: plogr' to 'DESCRIPTION', and '#include '\nin your C++ modules to use it.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/plogr_0.1-1.tar.gz" ], "version": "0.1-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plogr_0.2.0.tar.gz" ], "version": "0.2.0" } ] }, "r-plot3d": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-misc3d" ], "downloads": [ "https://cloud.r-project.org/src/contrib/plot3D_1.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/plot3D_1.4.tar.gz", "https://cloud.r-project.org/src/contrib/plot3D_1.3.tar.gz", "https://cloud.r-project.org/src/contrib/plot3D_1.1.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=plot3D" ], "licenses": [], "maintainers": [], "name": "r-plot3d", "patches": [], "summary": "Plotting Multi-Dimensional Data. 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Create interactive web\ngraphics from 'ggplot2' graphs and/or a custom interface to the (MIT-\nlicensed) JavaScript library 'plotly.js' inspired by the grammar of\ngraphics.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/plotly_4.10.0.tar.gz" ], "version": "4.10.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plotly_4.10.1.tar.gz" ], "version": "4.10.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plotly_4.10.4.tar.gz" ], "version": "4.10.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plotly_4.5.2.tar.gz" ], "version": "4.5.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plotly_4.5.6.tar.gz" ], "version": "4.5.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plotly_4.6.0.tar.gz" ], "version": "4.6.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plotly_4.7.0.tar.gz" ], "version": "4.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plotly_4.7.1.tar.gz" ], "version": "4.7.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plotly_4.8.0.tar.gz" ], "version": "4.8.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plotly_4.9.0.tar.gz" ], "version": "4.9.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plotly_4.9.3.tar.gz" ], "version": "4.9.3" } ] }, "r-plotmo": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-formula", "r-plotrix", "r-teachingdemos" ], "downloads": [ "https://cloud.r-project.org/src/contrib/plotmo_3.6.3.tar.gz", "https://cloud.r-project.org/src/contrib/plotmo_3.6.2.tar.gz", "https://cloud.r-project.org/src/contrib/plotmo_3.6.1.tar.gz", "https://cloud.r-project.org/src/contrib/plotmo_3.6.0.tar.gz", "https://cloud.r-project.org/src/contrib/plotmo_3.5.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=plotmo" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-plotmo", "patches": [], "summary": "Plot a Model's Residuals, Response, and Partial Dependence Plots. Plot\nmodel surfaces for a wide variety of models using partial dependence\nplots and other techniques. Also plot model residuals and other\ninformation on the model.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/plotmo_3.5.6.tar.gz" ], "version": "3.5.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plotmo_3.6.0.tar.gz" ], "version": "3.6.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plotmo_3.6.1.tar.gz" ], "version": "3.6.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plotmo_3.6.2.tar.gz" ], "version": "3.6.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plotmo_3.6.3.tar.gz" ], "version": "3.6.3" } ] }, "r-plotrix": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/plotrix_3.8-4.tar.gz", "https://cloud.r-project.org/src/contrib/plotrix_3.8-2.tar.gz", "https://cloud.r-project.org/src/contrib/plotrix_3.7-8.tar.gz", "https://cloud.r-project.org/src/contrib/plotrix_3.7-6.tar.gz", "https://cloud.r-project.org/src/contrib/plotrix_3.7-5.tar.gz", "https://cloud.r-project.org/src/contrib/plotrix_3.6-4.tar.gz", "https://cloud.r-project.org/src/contrib/plotrix_3.6-3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=plotrix" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-plotrix", "patches": [], "summary": "Various Plotting Functions. Lots of plots, various labeling, axis and\ncolor scaling functions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/plotrix_3.6-3.tar.gz" ], "version": "3.6-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plotrix_3.6-4.tar.gz" ], "version": "3.6-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plotrix_3.7-5.tar.gz" ], "version": "3.7-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plotrix_3.7-6.tar.gz" ], "version": "3.7-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plotrix_3.7-8.tar.gz" ], "version": "3.7-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plotrix_3.8-2.tar.gz" ], "version": "3.8-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plotrix_3.8-4.tar.gz" ], "version": "3.8-4" } ] }, "r-pls": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pls_2.8-4.tar.gz", "https://cloud.r-project.org/src/contrib/pls_2.8-1.tar.gz", "https://cloud.r-project.org/src/contrib/pls_2.8-0.tar.gz", "https://cloud.r-project.org/src/contrib/pls_2.7-3.tar.gz", "https://cloud.r-project.org/src/contrib/pls_2.7-1.tar.gz", "https://cloud.r-project.org/src/contrib/pls_2.7-0.tar.gz", "https://cloud.r-project.org/src/contrib/pls_2.6-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pls" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-pls", "patches": [], "summary": "Partial Least Squares and Principal Component Regression. Multivariate\nregression methods Partial Least Squares Regression (PLSR), Principal\nComponent Regression (PCR) and Canonical Powered Partial Least Squares\n(CPPLS).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pls_2.6-0.tar.gz" ], "version": "2.6-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pls_2.7-0.tar.gz" ], "version": "2.7-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pls_2.7-1.tar.gz" ], "version": "2.7-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pls_2.7-3.tar.gz" ], "version": "2.7-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pls_2.8-0.tar.gz" ], "version": "2.8-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pls_2.8-1.tar.gz" ], "version": "2.8-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pls_2.8-4.tar.gz" ], "version": "2.8-4" } ] }, "r-plyr": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/plyr_1.8.9.tar.gz", "https://cloud.r-project.org/src/contrib/plyr_1.8.8.tar.gz", "https://cloud.r-project.org/src/contrib/plyr_1.8.7.tar.gz", "https://cloud.r-project.org/src/contrib/plyr_1.8.6.tar.gz", "https://cloud.r-project.org/src/contrib/plyr_1.8.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=plyr" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-plyr", "patches": [], "summary": "Tools for Splitting, Applying and Combining Data. A set of tools that\nsolves a common set of problems: you need to break a big problem down\ninto manageable pieces, operate on each piece and then put all the\npieces back together. For example, you might want to fit a model to each\nspatial location or time point in your study, summarise data by panels\nor collapse high-dimensional arrays to simpler summary statistics. The\ndevelopment of 'plyr' has been generously supported by 'Becton\nDickinson'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/plyr_1.8.4.tar.gz" ], "version": "1.8.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plyr_1.8.6.tar.gz" ], "version": "1.8.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plyr_1.8.7.tar.gz" ], "version": "1.8.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plyr_1.8.8.tar.gz" ], "version": "1.8.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/plyr_1.8.9.tar.gz" ], "version": "1.8.9" } ] }, "r-pmcmr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/PMCMR_4.4.tar.gz", "https://cloud.r-project.org/src/contrib/PMCMR_4.3.tar.gz", "https://cloud.r-project.org/src/contrib/PMCMR_4.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=PMCMR" ], "licenses": [], "maintainers": [], "name": "r-pmcmr", "patches": [], "summary": "Calculate Pairwise Multiple Comparisons of Mean Rank Sums. Note, that\nthe 'PMCMR' package is superset by the novel 'PMCMRplus' package. The\n'PMCMRplus' package contains all functions from 'PMCMR' and many more\nparametric and non-parametric multiple comparison procedures, one-\nfactorial trend tests, as well as improved method functions, such as\nprint, summary and plot. The 'PMCMR' package is no longer maintained,\nbut kept for compatibility of reverse depending packages for some time.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/PMCMR_4.1.tar.gz" ], "version": "4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/PMCMR_4.3.tar.gz" ], "version": "4.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/PMCMR_4.4.tar.gz" ], "version": "4.4" } ] }, "r-pmcmrplus": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "gmp", "mpfr", "r", "r-bwstest", "r-gmp", "r-ksamples", "r-mass", "r-multcompview", "r-mvtnorm", "r-rmpfr", "r-suppdists" ], "downloads": [ "https://cloud.r-project.org/src/contrib/PMCMRplus_1.9.10.tar.gz", "https://cloud.r-project.org/src/contrib/PMCMRplus_1.9.6.tar.gz", "https://cloud.r-project.org/src/contrib/PMCMRplus_1.9.4.tar.gz", "https://cloud.r-project.org/src/contrib/PMCMRplus_1.9.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=PMCMRplus" ], "licenses": [], "maintainers": [], "name": "r-pmcmrplus", "patches": [], "summary": "Calculate Pairwise Multiple Comparisons of Mean Rank Sums Extended. For\none-way layout experiments the one-way ANOVA can be performed as an\nomnibus test. All-pairs multiple comparisons tests (Tukey-Kramer test,\nScheffe test, LSD-test) and many-to-one tests (Dunnett test) for\nnormally distributed residuals and equal within variance are available.\nFurthermore, all-pairs tests (Games-Howell test, Tamhane's T2 test,\nDunnett T3 test, Ury-Wiggins-Hochberg test) and many-to-one (Tamhane-\nDunnett Test) for normally distributed residuals and heterogeneous\nvariances are provided. Van der Waerden's normal scores test for\nomnibus, all-pairs and many-to-one tests is provided for non-normally\ndistributed residuals and homogeneous variances. The Kruskal-Wallis, BWS\nand Anderson-Darling omnibus test and all-pairs tests (Nemenyi test,\nDunn test, Conover test, Dwass-Steele-Critchlow- Fligner test) as well\nas many-to-one (Nemenyi test, Dunn test, U-test) are given for the\nanalysis of variance by ranks. Non-parametric trend tests (Jonckheere\ntest, Cuzick test, Johnson-Mehrotra test, Spearman test) are included.\nIn addition, a Friedman-test for one-way ANOVA with repeated measures on\nranks (CRBD) and Skillings-Mack test for unbalanced CRBD is provided\nwith consequent all-pairs tests (Nemenyi test, Siegel test, Miller test,\nConover test, Exact test) and many-to-one tests (Nemenyi test, Demsar\ntest, Exact test). A trend can be tested with Pages's test. Durbin's\ntest for a two-way balanced incomplete block design (BIBD) is given in\nthis package as well as Gore's test for CRBD with multiple observations\nper cell is given. Outlier tests, Mandel's k- and h statistic as well as\nfunctions for Type I error and Power analysis as well as generic\nsummary, print and plot methods are provided.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/PMCMRplus_1.9.10.tar.gz" ], "version": "1.9.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/PMCMRplus_1.9.3.tar.gz" ], "version": "1.9.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/PMCMRplus_1.9.4.tar.gz" ], "version": "1.9.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/PMCMRplus_1.9.6.tar.gz" ], "version": "1.9.6" } ] }, "r-png": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "libpng", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/png_0.1-8.tar.gz", "https://cloud.r-project.org/src/contrib/png_0.1-7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=png" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-png", "patches": [], "summary": "Read and write PNG images. This package provides an easy and simple way\nto read, write and display bitmap images stored in the PNG format. It\ncan read and write both files and in-memory raw vectors.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/png_0.1-7.tar.gz" ], "version": "0.1-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/png_0.1-8.tar.gz" ], "version": "0.1-8" } ] }, "r-polspline": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/polspline_1.1.25.tar.gz", "https://cloud.r-project.org/src/contrib/polspline_1.1.22.tar.gz", "https://cloud.r-project.org/src/contrib/polspline_1.1.20.tar.gz", "https://cloud.r-project.org/src/contrib/polspline_1.1.19.tar.gz", "https://cloud.r-project.org/src/contrib/polspline_1.1.18.tar.gz", "https://cloud.r-project.org/src/contrib/polspline_1.1.17.tar.gz", "https://cloud.r-project.org/src/contrib/polspline_1.1.16.tar.gz", "https://cloud.r-project.org/src/contrib/polspline_1.1.15.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=polspline" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-polspline", "patches": [], "summary": "Polynomial Spline Routines. Routines for the polynomial spline fitting\nroutines hazard regression, hazard estimation with flexible tails,\nlogspline, lspec, polyclass, and polymars, by C. Kooperberg and co-\nauthors.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/polspline_1.1.15.tar.gz" ], "version": "1.1.15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/polspline_1.1.16.tar.gz" ], "version": "1.1.16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/polspline_1.1.17.tar.gz" ], "version": "1.1.17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/polspline_1.1.18.tar.gz" ], "version": "1.1.18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/polspline_1.1.19.tar.gz" ], "version": "1.1.19" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/polspline_1.1.20.tar.gz" ], "version": "1.1.20" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/polspline_1.1.22.tar.gz" ], "version": "1.1.22" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/polspline_1.1.25.tar.gz" ], "version": "1.1.25" } ] }, "r-polyclip": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/polyclip_1.10-7.tar.gz", "https://cloud.r-project.org/src/contrib/polyclip_1.10-4.tar.gz", "https://cloud.r-project.org/src/contrib/polyclip_1.10-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=polyclip" ], "licenses": [ "BSL-1.0" ], "maintainers": [], "name": "r-polyclip", "patches": [], "summary": "Polygon Clipping. R port of Angus Johnson's open source library Clipper.\nPerforms polygon clipping operations (intersection, union, set minus,\nset difference) for polygonal regions of arbitrary complexity, including\nholes. Computes offset polygons (spatial buffer zones, morphological\ndilations, Minkowski dilations) for polygonal regions and polygonal\nlines. Computes Minkowski Sum of general polygons. There is a function\nfor removing self-intersections from polygon data.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/polyclip_1.10-0.tar.gz" ], "version": "1.10-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/polyclip_1.10-4.tar.gz" ], "version": "1.10-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/polyclip_1.10-7.tar.gz" ], "version": "1.10-7" } ] }, "r-polynom": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/polynom_1.4-1.tar.gz", "https://cloud.r-project.org/src/contrib/polynom_1.4-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=polynom" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-polynom", "patches": [], "summary": "A collection of functions to implement a class for univariate polynomial\nmanipulations.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/polynom_1.4-0.tar.gz" ], "version": "1.4-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/polynom_1.4-1.tar.gz" ], "version": "1.4-1" } ] }, "r-pool": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-dbi", "r-later", "r-r6", "r-rlang", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pool_1.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/pool_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/pool_0.1.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pool" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-pool", "patches": [], "summary": "Object Pooling. Enables the creation of object pools, which make it less\ncomputationally expensive to fetch a new object. Currently the only\nsupported pooled objects are 'DBI' connections.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pool_0.1.6.tar.gz" ], "version": "0.1.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pool_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pool_1.0.3.tar.gz" ], "version": "1.0.3" } ] }, "r-poorman": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/poorman_0.2.7.tar.gz", "https://cloud.r-project.org/src/contrib/poorman_0.2.6.tar.gz", "https://cloud.r-project.org/src/contrib/poorman_0.2.5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=poorman" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-poorman", "patches": [], "summary": "A Poor Man's Dependency Free Recreation of 'dplyr'. A replication of key\nfunctionality from 'dplyr' and the wider 'tidyverse' using only 'base'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/poorman_0.2.5.tar.gz" ], "version": "0.2.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/poorman_0.2.6.tar.gz" ], "version": "0.2.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/poorman_0.2.7.tar.gz" ], "version": "0.2.7" } ] }, "r-popgenome": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-ff", "zlib-api" ], "downloads": [ "https://cloud.r-project.org/src/contrib/PopGenome_2.7.5.tar.gz", "https://cloud.r-project.org/src/contrib/PopGenome_2.7.1.tar.gz", "https://cloud.r-project.org/src/contrib/PopGenome_2.6.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=PopGenome" ], "licenses": [], "maintainers": [], "name": "r-popgenome", "patches": [], "summary": "An Efficient Swiss Army Knife for Population Genomic Analyses. Provides\nefficient tools for population genomics data analysis, able to process\nindividual loci, large sets of loci, or whole genomes. PopGenome\n not only implements a wide range of\npopulation genetics statistics, but also facilitates the easy\nimplementation of new algorithms by other researchers. PopGenome is\noptimized for speed via the seamless integration of C code.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/PopGenome_2.6.1.tar.gz" ], "version": "2.6.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/PopGenome_2.7.1.tar.gz" ], "version": "2.7.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/PopGenome_2.7.5.tar.gz" ], "version": "2.7.5" } ] }, "r-popvar": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-bglr", "r-qtl", "r-rrblup" ], "downloads": [ "https://cloud.r-project.org/src/contrib/PopVar_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/PopVar_1.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/PopVar_1.2.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=PopVar" ], "licenses": [], "maintainers": [], "name": "r-popvar", "patches": [], "summary": "Genomic Breeding Tools: Genetic Variance Prediction and Cross-\nValidation. The main attribute of 'PopVar' is the prediction of genetic\nvariance in bi-parental populations, from which the package derives its\nname. 'PopVar' contains a set of functions that use phenotypic and\ngenotypic data from a set of candidate parents to 1) predict the mean,\ngenetic variance, and superior progeny value of all, or a defined set of\npairwise bi-parental crosses, and 2) perform cross-validation to\nestimate genome-wide prediction accuracy of multiple statistical models.\nMore details are available in Mohammadi, Tiede, and Smith (2015,\n). A dataset 'think_barley.rda' is\nincluded for reference and examples.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/PopVar_1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/PopVar_1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/PopVar_1.3.1.tar.gz" ], "version": "1.3.1" } ] }, "r-posterior": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-abind", "r-checkmate", "r-distributional", "r-matrixstats", "r-pillar", "r-rlang", "r-tensora", "r-tibble", "r-vctrs" ], "downloads": [ "https://cloud.r-project.org/src/contrib/posterior_1.6.0.tar.gz", "https://cloud.r-project.org/src/contrib/posterior_1.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/posterior_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/posterior_1.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/posterior_1.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/posterior_1.1.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=posterior" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "r-posterior", "patches": [], "summary": "Tools for Working with Posterior Distributions. Provides useful tools\nfor both users and developers of packages for fitting Bayesian models or\nworking with output from Bayesian models. The primary goals of the\npackage are to: (a) Efficiently convert between many different useful\nformats of draws (samples) from posterior or prior distributions. (b)\nProvide consistent methods for operations commonly performed on draws,\nfor example, subsetting, binding, or mutating draws. (c) Provide various\nsummaries of draws in convenient formats. (d) Provide lightweight\nimplementations of state of the art posterior inference diagnostics.\nReferences: Vehtari et al. (2021) .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/posterior_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/posterior_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/posterior_1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/posterior_1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/posterior_1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/posterior_1.6.0.tar.gz" ], "version": "1.6.0" } ] }, "r-powerlaw": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-pracma", "r-vgam" ], "downloads": [ "https://cloud.r-project.org/src/contrib/poweRlaw_0.80.0.tar.gz", "https://cloud.r-project.org/src/contrib/poweRlaw_0.70.6.tar.gz", "https://cloud.r-project.org/src/contrib/poweRlaw_0.70.2.tar.gz", "https://cloud.r-project.org/src/contrib/poweRlaw_0.70.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=poweRlaw" ], "licenses": [], "maintainers": [], "name": "r-powerlaw", "patches": [], "summary": "Analysis of Heavy Tailed Distributions. An implementation of maximum\nlikelihood estimators for a variety of heavy tailed distributions,\nincluding both the discrete and continuous power law distributions.\nAdditionally, a goodness-of-fit based approach is used to estimate the\nlower cut-off for the scaling region.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/poweRlaw_0.70.1.tar.gz" ], "version": "0.70.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/poweRlaw_0.70.2.tar.gz" ], "version": "0.70.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/poweRlaw_0.70.6.tar.gz" ], "version": "0.70.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/poweRlaw_0.80.0.tar.gz" ], "version": "0.80.0" } ] }, "r-prabclus": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-mass", "r-mclust" ], "downloads": [ "https://cloud.r-project.org/src/contrib/prabclus_2.3-3.tar.gz", "https://cloud.r-project.org/src/contrib/prabclus_2.3-2.tar.gz", "https://cloud.r-project.org/src/contrib/prabclus_2.3-1.tar.gz", "https://cloud.r-project.org/src/contrib/prabclus_2.2-7.1.tar.gz", "https://cloud.r-project.org/src/contrib/prabclus_2.2-6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=prabclus" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-prabclus", "patches": [], "summary": "Functions for Clustering of Presence-Absence, Abundance and Multilocus\nGenetic Data. Distance-based parametric bootstrap tests for clustering\nwith spatial neighborhood information. Some distance measures,\nClustering of presence-absence, abundance and multilocus genetic data\nfor species delimitation, nearest neighbor based noise detection.\nGenetic distances between communities. Tests whether various distance-\nbased regressions are equal. Try package?prabclus for on overview.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/prabclus_2.2-6.tar.gz" ], "version": "2.2-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/prabclus_2.2-7.1.tar.gz" ], "version": "2.2-7.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/prabclus_2.3-1.tar.gz" ], "version": "2.3-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/prabclus_2.3-2.tar.gz" ], "version": "2.3-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/prabclus_2.3-3.tar.gz" ], "version": "2.3-3" } ] }, "r-pracma": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pracma_2.4.4.tar.gz", "https://cloud.r-project.org/src/contrib/pracma_2.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/pracma_2.3.8.tar.gz", "https://cloud.r-project.org/src/contrib/pracma_2.3.6.tar.gz", "https://cloud.r-project.org/src/contrib/pracma_2.2.9.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pracma" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-pracma", "patches": [], "summary": "Practical Numerical Math Functions. Provides a large number of functions\nfrom numerical analysis and linear algebra, numerical optimization,\ndifferential equations, time series, plus some well-known special\nmathematical functions. Uses 'MATLAB' function names where appropriate\nto simplify porting.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pracma_2.2.9.tar.gz" ], "version": "2.2.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pracma_2.3.6.tar.gz" ], "version": "2.3.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pracma_2.3.8.tar.gz" ], "version": "2.3.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pracma_2.4.2.tar.gz" ], "version": "2.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pracma_2.4.4.tar.gz" ], "version": "2.4.4" } ] }, "r-praise": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/praise_1.0.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=praise" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-praise", "patches": [], "summary": "Praise Users. Build friendly R packages that praise their users if they\nhave done something good, or they just need it to feel better.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/praise_1.0.0.tar.gz" ], "version": "1.0.0" } ] }, "r-preprocesscore": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://git.bioconductor.org/packages/preprocessCore" ], "homepages": [ "https://bioconductor.org/packages/preprocessCore" ], "licenses": [], "maintainers": [], "name": "r-preprocesscore", "patches": [], "summary": "A collection of pre-processing functions. A library of core\npreprocessing routines.\n", "version": [ { "repositories": [ { "commit": "c58cb4c720eda0f1c733b989b14912093a7c5fbc", "type": "git", "url": "https://git.bioconductor.org/packages/preprocessCore" } ], "version": "1.38.1" }, { "repositories": [ { "commit": "969bb0e5cbd63d569502ae4e6eaadc1e216646dd", "type": "git", "url": "https://git.bioconductor.org/packages/preprocessCore" } ], "version": "1.40.0" }, { "repositories": [ { "commit": "2e3a8baeacfaa1526d51252642772ea951015bba", "type": "git", "url": "https://git.bioconductor.org/packages/preprocessCore" } ], "version": "1.42.0" }, { "repositories": [ { "commit": "dc1dc61fc562aaff3fd9b11ab0d48c2d6b3a5b81", "type": "git", "url": "https://git.bioconductor.org/packages/preprocessCore" } ], "version": "1.44.0" }, { "repositories": [ { "commit": "8cfc3938c1b08424587f437ed6cd2ec43512500e", "type": "git", "url": "https://git.bioconductor.org/packages/preprocessCore" } ], "version": "1.46.0" }, { "repositories": [ { "commit": "91de4ab67315dc2af68554ae3c48823f4b1ea8ac", "type": "git", "url": "https://git.bioconductor.org/packages/preprocessCore" } ], "version": "1.52.1" }, { "repositories": [ { "commit": "8f3272219507aa85e0c876fb434dc3b926c22c5d", "type": "git", "url": "https://git.bioconductor.org/packages/preprocessCore" } ], "version": "1.56.0" }, { "repositories": [ { "commit": "2995e3e1a8f428a80aee200db42ee44743d893f6", "type": "git", "url": "https://git.bioconductor.org/packages/preprocessCore" } ], "version": "1.58.0" }, { "repositories": [ { "commit": "7f62a7d54776a21ab6c2d3df4668382d531d1ee8", "type": "git", "url": "https://git.bioconductor.org/packages/preprocessCore" } ], "version": "1.60.0" }, { "repositories": [ { "commit": "a6e3d339bc8204d15db4e750bd98f0313490b658", "type": "git", "url": "https://git.bioconductor.org/packages/preprocessCore" } ], "version": "1.62.0" } ] }, "r-prettydoc": { "alias": [], "categories": [], "dependencies": [ "gmake", "pandoc", "r", "r-rmarkdown" ], "downloads": [ "https://cloud.r-project.org/src/contrib/prettydoc_0.4.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=prettydoc" ], "licenses": [], "maintainers": [], "name": "r-prettydoc", "patches": [], "summary": "Creating Pretty Documents from R Markdown. Creating tiny yet beautiful\ndocuments and vignettes from R Markdown. The package provides the\n'html_pretty' output format as an alternative to the 'html_document' and\n'html_vignette' engines that convert R Markdown into HTML pages. Various\nthemes and syntax highlight styles are supported.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/prettydoc_0.4.1.tar.gz" ], "version": "0.4.1" } ] }, "r-prettyunits": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-assertthat", "r-magrittr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/prettyunits_1.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/prettyunits_1.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/prettyunits_1.0.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=prettyunits" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-prettyunits", "patches": [], "summary": "Pretty, Human Readable Formatting of Quantities. Pretty, human readable\nformatting of quantities. Time intervals: 1337000 -> 15d 11h 23m 20s.\nVague time intervals: 2674000 -> about a month ago. Bytes: 1337 -> 1.34\nkB.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/prettyunits_1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/prettyunits_1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/prettyunits_1.2.0.tar.gz" ], "version": "1.2.0" } ] }, "r-proc": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-plyr", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pROC_1.18.5.tar.gz", "https://cloud.r-project.org/src/contrib/pROC_1.18.0.tar.gz", "https://cloud.r-project.org/src/contrib/pROC_1.17.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pROC" ], "licenses": [], "maintainers": [], "name": "r-proc", "patches": [], "summary": "Display and Analyze ROC Curves. Tools for visualizing, smoothing and\ncomparing receiver operating characteristic (ROC curves). (Partial) area\nunder the curve (AUC) can be compared with statistical tests based on\nU-statistics or bootstrap. Confidence intervals can be computed for\n(p)AUC or ROC curves.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pROC_1.17.0.1.tar.gz" ], "version": "1.17.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pROC_1.18.0.tar.gz" ], "version": "1.18.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pROC_1.18.5.tar.gz" ], "version": "1.18.5" } ] }, "r-processx": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-assertthat", "r-crayon", "r-debugme", "r-ps", "r-r6" ], "downloads": [ "https://cloud.r-project.org/src/contrib/processx_3.8.4.tar.gz", "https://cloud.r-project.org/src/contrib/processx_3.8.1.tar.gz", "https://cloud.r-project.org/src/contrib/processx_3.8.0.tar.gz", "https://cloud.r-project.org/src/contrib/processx_3.7.0.tar.gz", "https://cloud.r-project.org/src/contrib/processx_3.5.3.tar.gz", "https://cloud.r-project.org/src/contrib/processx_3.5.2.tar.gz", "https://cloud.r-project.org/src/contrib/processx_3.4.5.tar.gz", "https://cloud.r-project.org/src/contrib/processx_3.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/processx_3.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/processx_3.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/processx_3.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/processx_3.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/processx_2.0.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/processx_2.0.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=processx" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-processx", "patches": [], "summary": "Execute and Control System Processes. Tools to run system processes in\nthe background. It can check if a background process is running; wait on\na background process to finish; get the exit status of finished\nprocesses; kill background processes. It can read the standard output\nand error of the processes, using non-blocking connections. 'processx'\ncan poll a process for standard output or error, with a timeout. It can\nalso poll several processes at once.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/processx_2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/processx_2.0.0.1.tar.gz" ], "version": "2.0.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/processx_3.0.3.tar.gz" ], "version": "3.0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/processx_3.1.0.tar.gz" ], "version": "3.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/processx_3.2.0.tar.gz" ], "version": "3.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/processx_3.3.1.tar.gz" ], "version": "3.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/processx_3.4.1.tar.gz" ], "version": "3.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/processx_3.4.5.tar.gz" ], "version": "3.4.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/processx_3.5.2.tar.gz" ], "version": "3.5.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/processx_3.5.3.tar.gz" ], "version": "3.5.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/processx_3.7.0.tar.gz" ], "version": "3.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/processx_3.8.0.tar.gz" ], "version": "3.8.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/processx_3.8.1.tar.gz" ], "version": "3.8.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/processx_3.8.4.tar.gz" ], "version": "3.8.4" } ] }, "r-prodlim": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-data-table", "r-diagram", "r-kernsmooth", "r-lava", "r-rcpp", "r-survival" ], "downloads": [ "https://cloud.r-project.org/src/contrib/prodlim_2024.06.25.tar.gz", "https://cloud.r-project.org/src/contrib/prodlim_2023.03.31.tar.gz", "https://cloud.r-project.org/src/contrib/prodlim_2019.11.13.tar.gz", "https://cloud.r-project.org/src/contrib/prodlim_2018.04.18.tar.gz", "https://cloud.r-project.org/src/contrib/prodlim_1.6.1.tar.gz", "https://cloud.r-project.org/src/contrib/prodlim_1.5.9.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=prodlim" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-prodlim", "patches": [], "summary": "Product-Limit Estimation for Censored Event History Analysis. Product-\nLimit Estimation for Censored Event History Analysis. Fast and user\nfriendly implementation of nonparametric estimators for censored event\nhistory (survival) analysis. Kaplan-Meier and Aalen-Johansen method.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/prodlim_1.5.9.tar.gz" ], "version": "1.5.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/prodlim_1.6.1.tar.gz" ], "version": "1.6.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/prodlim_2018.04.18.tar.gz" ], "version": "2018.04.18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/prodlim_2019.11.13.tar.gz" ], "version": "2019.11.13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/prodlim_2023.03.31.tar.gz" ], "version": "2023.03.31" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/prodlim_2024.06.25.tar.gz" ], "version": "2024.06.25" } ] }, "r-profvis": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-htmlwidgets", "r-purrr", "r-rlang", "r-stringr", "r-vctrs" ], "downloads": [ "https://cloud.r-project.org/src/contrib/profvis_0.3.8.tar.gz", "https://cloud.r-project.org/src/contrib/profvis_0.3.7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=profvis" ], "licenses": [ "GPL-3.0-only OR custom" ], "maintainers": [], "name": "r-profvis", "patches": [], "summary": "Interactive visualizations for profiling R code.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/profvis_0.3.7.tar.gz" ], "version": "0.3.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/profvis_0.3.8.tar.gz" ], "version": "0.3.8" } ] }, "r-progress": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-crayon", "r-hms", "r-prettyunits", "r-r6" ], "downloads": [ "https://cloud.r-project.org/src/contrib/progress_1.2.3.tar.gz", "https://cloud.r-project.org/src/contrib/progress_1.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/progress_1.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/progress_1.1.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=progress" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-progress", "patches": [], "summary": "Terminal Progress Bars. Configurable Progress bars, they may include\npercentage, elapsed time, and/or the estimated completion time. They\nwork in terminals, in 'Emacs' 'ESS', 'RStudio', 'Windows' 'Rgui' and the\n'macOS' 'R.app'. The package also provides a 'C++' 'API', that works\nwith or without 'Rcpp'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/progress_1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/progress_1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/progress_1.2.2.tar.gz" ], "version": "1.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/progress_1.2.3.tar.gz" ], "version": "1.2.3" } ] }, "r-progressr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-digest" ], "downloads": [ "https://cloud.r-project.org/src/contrib/progressr_0.14.0.tar.gz", "https://cloud.r-project.org/src/contrib/progressr_0.13.0.tar.gz", "https://cloud.r-project.org/src/contrib/progressr_0.11.0.tar.gz", "https://cloud.r-project.org/src/contrib/progressr_0.10.1.tar.gz", "https://cloud.r-project.org/src/contrib/progressr_0.10.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=progressr" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-progressr", "patches": [], "summary": "An Inclusive, Unifying API for Progress Updates. A minimal, unifying API\nfor scripts and packages to report progress updates from anywhere\nincluding when using parallel processing. The package is designed such\nthat the developer can to focus on what progress should be reported on\nwithout having to worry about how to present it. The end user has full\ncontrol of how, where, and when to render these progress updates, e.g.\nin the terminal using utils::txtProgressBar() or\nprogress::progress_bar(), in a graphical user interface using\nutils::winProgressBar(), tcltk::tkProgressBar() or\nshiny::withProgress(), via the speakers using beep::beepr(), or on a\nfile system via the size of a file. Anyone can add additional,\ncustomized, progression handlers. The 'progressr' package uses R's\ncondition framework for signaling progress updated. Because of this,\nprogress can be reported from almost anywhere in R, e.g. from classical\nfor and while loops, from map-reduce API:s like the lapply() family of\nfunctions, 'purrr', 'plyr', and 'foreach'. It will also work with\nparallel processing via the 'future' framework, e.g.\nfuture.apply::future_lapply(), furrr::future_map(), and 'foreach' with\n'doFuture'. The package is compatible with Shiny applications.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/progressr_0.10.0.tar.gz" ], "version": "0.10.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/progressr_0.10.1.tar.gz" ], "version": "0.10.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/progressr_0.11.0.tar.gz" ], "version": "0.11.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/progressr_0.13.0.tar.gz" ], "version": "0.13.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/progressr_0.14.0.tar.gz" ], "version": "0.14.0" } ] }, "r-proj": { "alias": [], "categories": [], "dependencies": [ "c", "curl", "gmake", "libtiff", "proj", "r", "r-lifecycle", "r-wk" ], "downloads": [ "https://cloud.r-project.org/src/contrib/PROJ_0.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/PROJ_0.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/PROJ_0.1.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=PROJ" ], "licenses": [], "maintainers": [], "name": "r-proj", "patches": [], "summary": "Generic Coordinate System Transformations Using 'PROJ'. A wrapper around\nthe generic coordinate transformation software 'PROJ' that transforms\ncoordinates from one coordinate reference system ('CRS') to another.\nThis includes cartographic projections as well as geodetic\ntransformations. The intention is for this package to be used by user-\npackages such as 'reproj', and that the older 'PROJ.4' and version 5\npathways be provided by the 'proj4' package.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/PROJ_0.1.0.tar.gz" ], "version": "0.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/PROJ_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/PROJ_0.5.0.tar.gz" ], "version": "0.5.0" } ] }, "r-proj4": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "proj", "r", "sqlite" ], "downloads": [ "https://cloud.r-project.org/src/contrib/proj4_1.0-14.tar.gz", "https://cloud.r-project.org/src/contrib/proj4_1.0-12.tar.gz", "https://cloud.r-project.org/src/contrib/proj4_1.0-11.tar.gz", "https://cloud.r-project.org/src/contrib/proj4_1.0-10.1.tar.gz", "https://cloud.r-project.org/src/contrib/proj4_1.0-10.tar.gz", "https://cloud.r-project.org/src/contrib/proj4_1.0-8.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=proj4" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-proj4", "patches": [], "summary": "A simple interface to the PROJ.4 cartographic projections library. A\nsimple interface to lat/long projection and datum transformation of the\nPROJ.4 cartographic projections library. It allows transformation of\ngeographic coordinates from one projection and/or datum to another.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/proj4_1.0-10.tar.gz" ], "version": "1.0-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/proj4_1.0-10.1.tar.gz" ], "version": "1.0-10.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/proj4_1.0-11.tar.gz" ], "version": "1.0-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/proj4_1.0-12.tar.gz" ], "version": "1.0-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/proj4_1.0-14.tar.gz" ], "version": "1.0-14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/proj4_1.0-8.1.tar.gz" ], "version": "1.0-8.1" } ] }, "r-projpred": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-abind", "r-dplyr", "r-gamm4", "r-ggplot2", "r-gtools", "r-lme4", "r-loo", "r-magrittr", "r-mass", "r-mclogit", "r-mgcv", "r-mvtnorm", "r-nnet", "r-optimx", "r-ordinal", "r-rcpp", "r-rcpparmadillo", "r-rlang", "r-rngtools", "r-rstantools", "r-scales", "r-tidyverse", "r-ucminf" ], "downloads": [ "https://cloud.r-project.org/src/contrib/projpred_2.8.0.tar.gz", "https://cloud.r-project.org/src/contrib/projpred_2.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/projpred_2.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/projpred_2.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/projpred_2.0.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=projpred" ], "licenses": [ "GPL-3.0-only OR custom" ], "maintainers": [], "name": "r-projpred", "patches": [], "summary": "Projection Predictive Feature Selection. Performs projection predictive\nfeature selection for generalized linear models and generalized linear\nand additive multilevel models (see, Piironen, Paasiniemi and Vehtari,\n2020, , Catalina,\nBurkner and Vehtari, 2020, ). The package is\ncompatible with the 'rstanarm' and 'brms' packages, but other reference\nmodels can also be used. See the package vignette for more information\nand examples.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/projpred_2.0.2.tar.gz" ], "version": "2.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/projpred_2.1.2.tar.gz" ], "version": "2.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/projpred_2.2.1.tar.gz" ], "version": "2.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/projpred_2.5.0.tar.gz" ], "version": "2.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/projpred_2.8.0.tar.gz" ], "version": "2.8.0" } ] }, "r-promises": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-fastmap", "r-later", "r-magrittr", "r-r6", "r-rcpp", "r-rlang" ], "downloads": [ "https://cloud.r-project.org/src/contrib/promises_1.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/promises_1.2.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/promises_1.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/promises_1.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=promises" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-promises", "patches": [], "summary": "Abstractions for Promise-Based Asynchronous Programming. Provides\nfundamental abstractions for doing asynchronous programming in R using\npromises. Asynchronous programming is useful for allowing a single R\nprocess to orchestrate multiple tasks in the background while also\nattending to something else. Semantics are similar to 'JavaScript'\npromises, but with a syntax that is idiomatic R.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/promises_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/promises_1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/promises_1.2.0.1.tar.gz" ], "version": "1.2.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/promises_1.3.0.tar.gz" ], "version": "1.3.0" } ] }, "r-protgenerics": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://git.bioconductor.org/packages/ProtGenerics" ], "homepages": [ "https://bioconductor.org/packages/ProtGenerics" ], "licenses": [], "maintainers": [], "name": "r-protgenerics", "patches": [], "summary": "S4 generic functions for Bioconductor proteomics infrastructure. S4\ngeneric functions needed by Bioconductor proteomics packages.\n", "version": [ { "repositories": [ { "commit": "9ae2c3710b77381571900f0f25c6c8fda65795ac", "type": "git", "url": "https://git.bioconductor.org/packages/ProtGenerics" } ], "version": "1.10.0" }, { "repositories": [ { "commit": "e84382a4b1730409f572fb681b5070017d00d30d", "type": "git", "url": "https://git.bioconductor.org/packages/ProtGenerics" } ], "version": "1.12.0" }, { "repositories": [ { "commit": "c85940b70a16ad69275c4facb3ef673d20a1c998", "type": "git", "url": "https://git.bioconductor.org/packages/ProtGenerics" } ], "version": "1.14.0" }, { "repositories": [ { "commit": "960a5fdc586898513b5ae9c48fffba5c5d703723", "type": "git", "url": "https://git.bioconductor.org/packages/ProtGenerics" } ], "version": "1.16.0" }, { "repositories": [ { "commit": "2bb3011fb0d79536e1c50251084a7057004449c6", "type": "git", "url": "https://git.bioconductor.org/packages/ProtGenerics" } ], "version": "1.22.0" }, { "repositories": [ { "commit": "2033289ab928034b86c321e56c37e502e557c7a1", "type": "git", "url": "https://git.bioconductor.org/packages/ProtGenerics" } ], "version": "1.26.0" }, { "repositories": [ { "commit": "cfcd0a9ebd642515764ba70c5c4e9c2a0f2f07ac", "type": "git", "url": "https://git.bioconductor.org/packages/ProtGenerics" } ], "version": "1.28.0" }, { "repositories": [ { "commit": "fcd566bf04034cf52db3338b5d6de7447443cf77", "type": "git", "url": "https://git.bioconductor.org/packages/ProtGenerics" } ], "version": "1.30.0" }, { "repositories": [ { "commit": "30c6458568c43fc7d769b0aef855d6e90b314eaa", "type": "git", "url": "https://git.bioconductor.org/packages/ProtGenerics" } ], "version": "1.32.0" }, { "repositories": [ { "commit": "b2b3bb0938e20f58fca905f6870de7dbc9dfd7a3", "type": "git", "url": "https://git.bioconductor.org/packages/ProtGenerics" } ], "version": "1.8.0" } ] }, "r-proto": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/proto_1.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/proto_0.3-10.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=proto" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-proto", "patches": [], "summary": "Prototype Object-Based Programming. An object oriented system using\nobject-based, also called prototype-based, rather than class-based\nobject oriented ideas.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/proto_0.3-10.tar.gz" ], "version": "0.3-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/proto_1.0.0.tar.gz" ], "version": "1.0.0" } ] }, "r-proxy": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/proxy_0.4-27.tar.gz", "https://cloud.r-project.org/src/contrib/proxy_0.4-26.tar.gz", "https://cloud.r-project.org/src/contrib/proxy_0.4-24.tar.gz", "https://cloud.r-project.org/src/contrib/proxy_0.4-23.tar.gz", "https://cloud.r-project.org/src/contrib/proxy_0.4-19.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=proxy" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-proxy", "patches": [], "summary": "Distance and Similarity Measures. Provides an extensible framework for\nthe efficient calculation of auto- and cross-proximities, along with\nimplementations of the most popular ones.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/proxy_0.4-19.tar.gz" ], "version": "0.4-19" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/proxy_0.4-23.tar.gz" ], "version": "0.4-23" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/proxy_0.4-24.tar.gz" ], "version": "0.4-24" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/proxy_0.4-26.tar.gz" ], "version": "0.4-26" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/proxy_0.4-27.tar.gz" ], "version": "0.4-27" } ] }, "r-pryr": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-codetools", "r-lobstr", "r-rcpp", "r-stringr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pryr_0.1.6.tar.gz", "https://cloud.r-project.org/src/contrib/pryr_0.1.5.tar.gz", "https://cloud.r-project.org/src/contrib/pryr_0.1.4.tar.gz", "https://cloud.r-project.org/src/contrib/pryr_0.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/pryr_0.1.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pryr" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-pryr", "patches": [], "summary": "Tools for Computing on the Language. Useful tools to pry back the covers\nof R and understand the language at a deeper level.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pryr_0.1.2.tar.gz" ], "version": "0.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pryr_0.1.3.tar.gz" ], "version": "0.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pryr_0.1.4.tar.gz" ], "version": "0.1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pryr_0.1.5.tar.gz" ], "version": "0.1.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pryr_0.1.6.tar.gz" ], "version": "0.1.6" } ] }, "r-ps": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ps_1.7.7.tar.gz", "https://cloud.r-project.org/src/contrib/ps_1.7.5.tar.gz", "https://cloud.r-project.org/src/contrib/ps_1.7.2.tar.gz", "https://cloud.r-project.org/src/contrib/ps_1.7.1.tar.gz", "https://cloud.r-project.org/src/contrib/ps_1.7.0.tar.gz", "https://cloud.r-project.org/src/contrib/ps_1.6.0.tar.gz", "https://cloud.r-project.org/src/contrib/ps_1.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/ps_1.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/ps_1.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/ps_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/ps_1.0.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ps" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-ps", "patches": [], "summary": "List, Query, Manipulate System Processes. List, query and manipulate all\nsystem processes, on 'Windows', 'Linux' and 'macOS'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ps_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ps_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ps_1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ps_1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ps_1.5.0.tar.gz" ], "version": "1.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ps_1.6.0.tar.gz" ], "version": "1.6.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ps_1.7.0.tar.gz" ], "version": "1.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ps_1.7.1.tar.gz" ], "version": "1.7.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ps_1.7.2.tar.gz" ], "version": "1.7.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ps_1.7.5.tar.gz" ], "version": "1.7.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ps_1.7.7.tar.gz" ], "version": "1.7.7" } ] }, "r-pscbs": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-aroma-light", "r-dnacopy", "r-future", "r-listenv", "r-matrixstats", "r-r-cache", "r-r-methodss3", "r-r-oo", "r-r-utils" ], "downloads": [ "https://cloud.r-project.org/src/contrib/PSCBS_0.67.0.tar.gz", "https://cloud.r-project.org/src/contrib/PSCBS_0.66.0.tar.gz", "https://cloud.r-project.org/src/contrib/PSCBS_0.65.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=PSCBS" ], "licenses": [], "maintainers": [], "name": "r-pscbs", "patches": [], "summary": "Analysis of Parent-Specific DNA Copy Numbers. Segmentation of allele-\nspecific DNA copy number data and detection of regions with abnormal\ncopy number within each parental chromosome. Both tumor-normal paired\nand tumor-only analyses are supported.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/PSCBS_0.65.0.tar.gz" ], "version": "0.65.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/PSCBS_0.66.0.tar.gz" ], "version": "0.66.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/PSCBS_0.67.0.tar.gz" ], "version": "0.67.0" } ] }, "r-pspline": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pspline_1.0-20.tar.gz", "https://cloud.r-project.org/src/contrib/pspline_1.0-19.tar.gz", "https://cloud.r-project.org/src/contrib/pspline_1.0-18.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pspline" ], "licenses": [ "custom" ], "maintainers": [], "name": "r-pspline", "patches": [], "summary": "Penalized Smoothing Splines. Smoothing splines with penalties on order m\nderivatives.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pspline_1.0-18.tar.gz" ], "version": "1.0-18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pspline_1.0-19.tar.gz" ], "version": "1.0-19" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/pspline_1.0-20.tar.gz" ], "version": "1.0-20" } ] }, "r-psych": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-foreign", "r-gparotation", "r-lattice", "r-mnormt", "r-nlme" ], "downloads": [ "https://cloud.r-project.org/src/contrib/psych_2.4.6.26.tar.gz", "https://cloud.r-project.org/src/contrib/psych_2.3.3.tar.gz", "https://cloud.r-project.org/src/contrib/psych_2.2.9.tar.gz", "https://cloud.r-project.org/src/contrib/psych_2.2.5.tar.gz", "https://cloud.r-project.org/src/contrib/psych_2.1.9.tar.gz", "https://cloud.r-project.org/src/contrib/psych_2.0.12.tar.gz", "https://cloud.r-project.org/src/contrib/psych_1.8.12.tar.gz", "https://cloud.r-project.org/src/contrib/psych_1.8.10.tar.gz", "https://cloud.r-project.org/src/contrib/psych_1.7.8.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=psych" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-psych", "patches": [], "summary": "Procedures for Psychological, Psychometric, and Personality Research. A\ngeneral purpose toolbox for personality, psychometric theory and\nexperimental psychology. Functions are primarily for multivariate\nanalysis and scale construction using factor analysis, principal\ncomponent analysis, cluster analysis and reliability analysis, although\nothers provide basic descriptive statistics. Item Response Theory is\ndone using factor analysis of tetrachoric and polychoric correlations.\nFunctions for analyzing data at multiple levels include within and\nbetween group statistics, including correlations and factor analysis.\nFunctions for simulating and testing particular item and test structures\nare included. Several functions serve as a useful front end for\nstructural equation modeling. Graphical displays of path diagrams,\nfactor analysis and structural equation models are created using basic\ngraphics. Some of the functions are written to support a book on\npsychometric theory as well as publications in personality research. For\nmore information, see the web page.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/psych_1.7.8.tar.gz" ], "version": "1.7.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/psych_1.8.10.tar.gz" ], "version": "1.8.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/psych_1.8.12.tar.gz" ], "version": "1.8.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/psych_2.0.12.tar.gz" ], "version": "2.0.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/psych_2.1.9.tar.gz" ], "version": "2.1.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/psych_2.2.5.tar.gz" ], "version": "2.2.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/psych_2.2.9.tar.gz" ], "version": "2.2.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/psych_2.3.3.tar.gz" ], "version": "2.3.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/psych_2.4.6.26.tar.gz" ], "version": "2.4.6.26" } ] }, "r-ptw": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-nloptr", "r-rcppde" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ptw_1.9-16.tar.gz", "https://cloud.r-project.org/src/contrib/ptw_1.9-15.tar.gz", "https://cloud.r-project.org/src/contrib/ptw_1.9-13.tar.gz", "https://cloud.r-project.org/src/contrib/ptw_1.9-12.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ptw" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-ptw", "patches": [], "summary": "Parametric Time Warping. Parametric Time Warping aligns patterns, i.e.\nit aims to put corresponding features at the same locations. The\nalgorithm searches for an optimal polynomial describing the warping. It\nis possible to align one sample to a reference, several samples to the\nsame reference, or several samples to several references. One can choose\nbetween calculating individual warpings, or one global warping for a set\nof samples and one reference. Two optimization criteria are implemented:\nRMS (Root Mean Square error) and WCC (Weighted Cross Correlation). Both\nwarping of peak profiles and of peak lists are supported. A vignette for\nthe latter is contained in the inst/doc directory of the source package\n- the vignette source can be found on the package github site.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ptw_1.9-12.tar.gz" ], "version": "1.9-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ptw_1.9-13.tar.gz" ], "version": "1.9-13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ptw_1.9-15.tar.gz" ], "version": "1.9-15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ptw_1.9-16.tar.gz" ], "version": "1.9-16" } ] }, "r-purrr": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-cli", "r-lifecycle", "r-magrittr", "r-rlang", "r-tibble", "r-vctrs" ], "downloads": [ "https://cloud.r-project.org/src/contrib/purrr_1.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/purrr_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/purrr_0.3.5.tar.gz", "https://cloud.r-project.org/src/contrib/purrr_0.3.4.tar.gz", "https://cloud.r-project.org/src/contrib/purrr_0.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/purrr_0.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/purrr_0.2.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=purrr" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-purrr", "patches": [], "summary": "Functional Programming Tools. A complete and consistent functional\nprogramming toolkit for R.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/purrr_0.2.4.tar.gz" ], "version": "0.2.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/purrr_0.3.1.tar.gz" ], "version": "0.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/purrr_0.3.2.tar.gz" ], "version": "0.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/purrr_0.3.4.tar.gz" ], "version": "0.3.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/purrr_0.3.5.tar.gz" ], "version": "0.3.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/purrr_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/purrr_1.0.2.tar.gz" ], "version": "1.0.2" } ] }, "r-pvclust": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/pvclust_2.2-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=pvclust" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-pvclust", "patches": [], "summary": "Hierarchical Clustering with P-Values via Multiscale Bootstrap\nResampling. An implementation of multiscale bootstrap resampling for\nassessing the uncertainty in hierarchical cluster analysis. It provides\nSI (selective inference) p-value, AU (approximately unbiased) p-value\nand BP (bootstrap probability) value for each cluster in a dendrogram.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/pvclust_2.2-0.tar.gz" ], "version": "2.2-0" } ] }, "r-qqconf": { "alias": [], "categories": [], "dependencies": [ "cxx", "fftw", "gmake", "r", "r-dplyr", "r-magrittr", "r-mass", "r-rcpp", "r-rlang", "r-robustbase" ], "downloads": [ "https://cloud.r-project.org/src/contrib/qqconf_1.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/qqconf_1.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/qqconf_1.2.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=qqconf" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-qqconf", "patches": [], "summary": "Creates Simultaneous Testing Bands for QQ-Plots. Provides functionality\nfor creating Quantile-Quantile (QQ) and Probability-Probability (PP)\nplots with simultaneous testing bands to asses significance of sample\ndeviation from a reference distribution.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/qqconf_1.2.3.tar.gz" ], "version": "1.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/qqconf_1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/qqconf_1.3.2.tar.gz" ], "version": "1.3.2" } ] }, "r-qs": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-bh", "r-rapiserialize", "r-rcpp", "r-stringfish", "zstd" ], "downloads": [ "https://cloud.r-project.org/src/contrib/qs_0.26.3.tar.gz", "https://cloud.r-project.org/src/contrib/qs_0.25.5.tar.gz", "https://cloud.r-project.org/src/contrib/qs_0.25.4.tar.gz", "https://cloud.r-project.org/src/contrib/qs_0.25.3.tar.gz", "https://cloud.r-project.org/src/contrib/qs_0.25.2.tar.gz", "https://cloud.r-project.org/src/contrib/qs_0.23.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=qs" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [ "dorton21" ], "name": "r-qs", "patches": [], "summary": "Quick Serialization of R Objects. Provides functions for quickly writing\nand reading any R object to and from disk.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/qs_0.23.6.tar.gz" ], "version": "0.23.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/qs_0.25.2.tar.gz" ], "version": "0.25.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/qs_0.25.3.tar.gz" ], "version": "0.25.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/qs_0.25.4.tar.gz" ], "version": "0.25.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/qs_0.25.5.tar.gz" ], "version": "0.25.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/qs_0.26.3.tar.gz" ], "version": "0.26.3" } ] }, "r-qtl": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/qtl_1.66.tar.gz", "https://cloud.r-project.org/src/contrib/qtl_1.60.tar.gz", "https://cloud.r-project.org/src/contrib/qtl_1.58.tar.gz", "https://cloud.r-project.org/src/contrib/qtl_1.52.tar.gz", "https://cloud.r-project.org/src/contrib/qtl_1.50.tar.gz", "https://cloud.r-project.org/src/contrib/qtl_1.47-9.tar.gz", "https://cloud.r-project.org/src/contrib/qtl_1.44-9.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=qtl" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-qtl", "patches": [], "summary": "Tools for Analyzing QTL Experiments. Analysis of experimental crosses to\nidentify genes (called quantitative trait loci, QTLs) contributing to\nvariation in quantitative traits. Broman et al. (2003)\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/qtl_1.44-9.tar.gz" ], "version": "1.44-9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/qtl_1.47-9.tar.gz" ], "version": "1.47-9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/qtl_1.50.tar.gz" ], "version": "1.50" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/qtl_1.52.tar.gz" ], "version": "1.52" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/qtl_1.58.tar.gz" ], "version": "1.58" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/qtl_1.60.tar.gz" ], "version": "1.60" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/qtl_1.66.tar.gz" ], "version": "1.66" } ] }, "r-quadprog": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/quadprog_1.5-8.tar.gz", "https://cloud.r-project.org/src/contrib/quadprog_1.5-7.tar.gz", "https://cloud.r-project.org/src/contrib/quadprog_1.5-6.tar.gz", "https://cloud.r-project.org/src/contrib/quadprog_1.5-5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=quadprog" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-quadprog", "patches": [], "summary": "Functions to Solve Quadratic Programming Problems. This package contains\nroutines and documentation for solving quadratic programming problems.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/quadprog_1.5-5.tar.gz" ], "version": "1.5-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quadprog_1.5-6.tar.gz" ], "version": "1.5-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quadprog_1.5-7.tar.gz" ], "version": "1.5-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quadprog_1.5-8.tar.gz" ], "version": "1.5-8" } ] }, "r-quantmod": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-curl", "r-jsonlite", "r-ttr", "r-xts", "r-zoo" ], "downloads": [ "https://cloud.r-project.org/src/contrib/quantmod_0.4.26.tar.gz", "https://cloud.r-project.org/src/contrib/quantmod_0.4.22.tar.gz", "https://cloud.r-project.org/src/contrib/quantmod_0.4.20.tar.gz", "https://cloud.r-project.org/src/contrib/quantmod_0.4.18.tar.gz", "https://cloud.r-project.org/src/contrib/quantmod_0.4-15.tar.gz", "https://cloud.r-project.org/src/contrib/quantmod_0.4-14.tar.gz", "https://cloud.r-project.org/src/contrib/quantmod_0.4-10.tar.gz", "https://cloud.r-project.org/src/contrib/quantmod_0.4-5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=quantmod" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-quantmod", "patches": [], "summary": "Quantitative Financial Modelling Framework. Specify, build, trade, and\nanalyse quantitative financial trading strategies.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/quantmod_0.4-10.tar.gz" ], "version": "0.4-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quantmod_0.4-14.tar.gz" ], "version": "0.4-14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quantmod_0.4-15.tar.gz" ], "version": "0.4-15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quantmod_0.4-5.tar.gz" ], "version": "0.4-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quantmod_0.4.18.tar.gz" ], "version": "0.4.18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quantmod_0.4.20.tar.gz" ], "version": "0.4.20" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quantmod_0.4.22.tar.gz" ], "version": "0.4.22" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quantmod_0.4.26.tar.gz" ], "version": "0.4.26" } ] }, "r-quantreg": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-conquer", "r-mass", "r-matrix", "r-matrixmodels", "r-sparsem", "r-survival" ], "downloads": [ "https://cloud.r-project.org/src/contrib/quantreg_6.1.tar.gz", "https://cloud.r-project.org/src/contrib/quantreg_5.98.tar.gz", "https://cloud.r-project.org/src/contrib/quantreg_5.95.tar.gz", "https://cloud.r-project.org/src/contrib/quantreg_5.94.tar.gz", "https://cloud.r-project.org/src/contrib/quantreg_5.93.tar.gz", "https://cloud.r-project.org/src/contrib/quantreg_5.88.tar.gz", "https://cloud.r-project.org/src/contrib/quantreg_5.87.tar.gz", "https://cloud.r-project.org/src/contrib/quantreg_5.86.tar.gz", "https://cloud.r-project.org/src/contrib/quantreg_5.82.tar.gz", "https://cloud.r-project.org/src/contrib/quantreg_5.51.tar.gz", "https://cloud.r-project.org/src/contrib/quantreg_5.42.1.tar.gz", "https://cloud.r-project.org/src/contrib/quantreg_5.40.tar.gz", "https://cloud.r-project.org/src/contrib/quantreg_5.29.tar.gz", "https://cloud.r-project.org/src/contrib/quantreg_5.26.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=quantreg" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-quantreg", "patches": [], "summary": "Quantile Regression. Estimation and inference methods for models of\nconditional quantiles: Linear and nonlinear parametric and non-\nparametric (total variation penalized) models for conditional quantiles\nof a univariate response and several methods for handling censored\nsurvival data. Portfolio selection methods based on expected shortfall\nrisk are also now included. See Koenker (2006)\n and Koenker et al. (2017)\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/quantreg_5.26.tar.gz" ], "version": "5.26" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quantreg_5.29.tar.gz" ], "version": "5.29" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quantreg_5.40.tar.gz" ], "version": "5.40" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quantreg_5.42.1.tar.gz" ], "version": "5.42.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quantreg_5.51.tar.gz" ], "version": "5.51" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quantreg_5.82.tar.gz" ], "version": "5.82" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quantreg_5.86.tar.gz" ], "version": "5.86" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quantreg_5.87.tar.gz" ], "version": "5.87" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quantreg_5.88.tar.gz" ], "version": "5.88" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quantreg_5.93.tar.gz" ], "version": "5.93" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quantreg_5.94.tar.gz" ], "version": "5.94" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quantreg_5.95.tar.gz" ], "version": "5.95" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quantreg_5.98.tar.gz" ], "version": "5.98" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/quantreg_6.1.tar.gz" ], "version": "6.1" } ] }, "r-quantro": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-biobase", "r-doparallel", "r-foreach", "r-ggplot2", "r-iterators", "r-minfi", "r-rcolorbrewer" ], "downloads": [ "https://git.bioconductor.org/packages/quantro" ], "homepages": [ "https://bioconductor.org/packages/quantro" ], "licenses": [], "maintainers": [], "name": "r-quantro", "patches": [], "summary": "A test for when to use quantile normalization. A data-driven test for\nthe assumptions of quantile normalization using raw data such as objects\nthat inherit eSets (e.g. ExpressionSet, MethylSet). 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This package takes\na list of p-values resulting from the simultaneous testing of many\nhypotheses and estimates their q-values and local FDR values. The\nq-value of a test measures the proportion of false positives incurred\n(called the false discovery rate) when that particular test is called\nsignificant. The local FDR measures the posterior probability the null\nhypothesis is true given the test's p-value. Various plots are\nautomatically generated, allowing one to make sensible significance cut-\noffs. Several mathematical results have recently been shown on the\nconservative accuracy of the estimated q-values from this software. 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A package for implementing radial inverse variance weighted\nand MR-Egger methods.\n", "version": [ { "repositories": [ { "commit": "d63d3fc8270836ab441b9e14a5ba3eeb2795d7cb", "type": "git", "url": "https://github.com/WSpiller/RadialMR" } ], "version": "1.0" } ] }, "r-ragg": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "freetype", "gmake", "jpeg", "libpng", "libtiff", "r", "r-systemfonts", "r-textshaping" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ragg_1.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/ragg_1.2.5.tar.gz", "https://cloud.r-project.org/src/contrib/ragg_1.2.4.tar.gz", "https://cloud.r-project.org/src/contrib/ragg_1.2.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ragg" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-ragg", "patches": [], "summary": "Graphic Devices Based on AGG. Anti-Grain Geometry (AGG) is a high-\nquality and high-performance 2D drawing library. The 'ragg' package\nprovides a set of graphic devices based on AGG to use as alternative to\nthe raster devices provided through the 'grDevices' package.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ragg_1.2.3.tar.gz" ], "version": "1.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ragg_1.2.4.tar.gz" ], "version": "1.2.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ragg_1.2.5.tar.gz" ], "version": "1.2.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ragg_1.3.2.tar.gz" ], "version": "1.3.2" } ] }, "r-rainbow": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cluster", "r-colorspace", "r-hdrcde", "r-ks", "r-mass", "r-pcapp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rainbow_3.8.tar.gz", "https://cloud.r-project.org/src/contrib/rainbow_3.7.tar.gz", "https://cloud.r-project.org/src/contrib/rainbow_3.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rainbow" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-rainbow", "patches": [], "summary": "Bagplots, Boxplots and Rainbow Plots for Functional Data. Visualizing\nfunctional data and identifying functional outliers.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rainbow_3.6.tar.gz" ], "version": "3.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rainbow_3.7.tar.gz" ], "version": "3.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rainbow_3.8.tar.gz" ], "version": "3.8" } ] }, "r-randomfields": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-randomfieldsutils", "r-sp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RandomFields_3.3.14.tar.gz", "https://cloud.r-project.org/src/contrib/RandomFields_3.3.13.tar.gz", "https://cloud.r-project.org/src/contrib/RandomFields_3.3.8.tar.gz", "https://cloud.r-project.org/src/contrib/RandomFields_3.3.6.tar.gz", "https://cloud.r-project.org/src/contrib/RandomFields_3.3.4.tar.gz", "https://cloud.r-project.org/src/contrib/RandomFields_3.1.50.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RandomFields" ], "licenses": [], "maintainers": [], "name": "r-randomfields", "patches": [], "summary": "Simulation and Analysis of Random Fields. Methods for the inference on\nand the simulation of Gaussian fields are provided. Furthermore, methods\nfor the simulation of extreme value random fields are provided. Main\ngeostatistical parts are based among others on the books by Christian\nLantuejoul .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RandomFields_3.1.50.tar.gz" ], "version": "3.1.50" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RandomFields_3.3.13.tar.gz" ], "version": "3.3.13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RandomFields_3.3.14.tar.gz" ], "version": "3.3.14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RandomFields_3.3.4.tar.gz" ], "version": "3.3.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RandomFields_3.3.6.tar.gz" ], "version": "3.3.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RandomFields_3.3.8.tar.gz" ], "version": "3.3.8" } ] }, "r-randomfieldsutils": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RandomFieldsUtils_1.2.5.tar.gz", "https://cloud.r-project.org/src/contrib/RandomFieldsUtils_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/RandomFieldsUtils_0.5.6.tar.gz", "https://cloud.r-project.org/src/contrib/RandomFieldsUtils_0.5.3.tar.gz", "https://cloud.r-project.org/src/contrib/RandomFieldsUtils_0.5.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RandomFieldsUtils" ], "licenses": [], "maintainers": [], "name": "r-randomfieldsutils", "patches": [], "summary": "Utilities for the Simulation and Analysis of Random Fields and Genetic\nData. Various utilities are provided that might be used in spatial\nstatistics and elsewhere. It delivers a method for solving linear\nequations that checks the sparsity of the matrix before any algorithm is\nused.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RandomFieldsUtils_0.5.1.tar.gz" ], "version": "0.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RandomFieldsUtils_0.5.3.tar.gz" ], "version": "0.5.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RandomFieldsUtils_0.5.6.tar.gz" ], "version": "0.5.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RandomFieldsUtils_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RandomFieldsUtils_1.2.5.tar.gz" ], "version": "1.2.5" } ] }, "r-randomforest": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/randomForest_4.7-1.1.tar.gz", "https://cloud.r-project.org/src/contrib/randomForest_4.6-14.tar.gz", "https://cloud.r-project.org/src/contrib/randomForest_4.6-12.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=randomForest" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-randomforest", "patches": [], "summary": "Breiman and Cutler's Random Forests for Classification and Regression.\nClassification and regression based on a forest of trees using random\ninputs.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/randomForest_4.6-12.tar.gz" ], "version": "4.6-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/randomForest_4.6-14.tar.gz" ], "version": "4.6-14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/randomForest_4.7-1.1.tar.gz" ], "version": "4.7-1.1" } ] }, "r-randomglm": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-doparallel", "r-foreach", "r-geometry", "r-hmisc", "r-mass", "r-matrixstats", "r-survival" ], "downloads": [ "https://cloud.r-project.org/src/contrib/randomGLM_1.10-1.tar.gz", "https://cloud.r-project.org/src/contrib/randomGLM_1.02-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=randomGLM" ], "licenses": [], "maintainers": [], "name": "r-randomglm", "patches": [], "summary": "Random General Linear Model Prediction. The package implements a bagging\npredictor based on general linear models.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/randomGLM_1.02-1.tar.gz" ], "version": "1.02-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/randomGLM_1.10-1.tar.gz" ], "version": "1.10-1" } ] }, "r-ranger": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-matrix", "r-rcpp", "r-rcppeigen" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ranger_0.16.0.tar.gz", "https://cloud.r-project.org/src/contrib/ranger_0.15.1.tar.gz", "https://cloud.r-project.org/src/contrib/ranger_0.14.1.tar.gz", "https://cloud.r-project.org/src/contrib/ranger_0.13.1.tar.gz", "https://cloud.r-project.org/src/contrib/ranger_0.12.1.tar.gz", "https://cloud.r-project.org/src/contrib/ranger_0.11.2.tar.gz", "https://cloud.r-project.org/src/contrib/ranger_0.11.1.tar.gz", "https://cloud.r-project.org/src/contrib/ranger_0.8.0.tar.gz", "https://cloud.r-project.org/src/contrib/ranger_0.7.0.tar.gz", "https://cloud.r-project.org/src/contrib/ranger_0.6.0.tar.gz", "https://cloud.r-project.org/src/contrib/ranger_0.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/ranger_0.4.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ranger" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-ranger", "patches": [], "summary": "A Fast Implementation of Random Forests. A fast implementation of Random\nForests, particularly suited for high dimensional data. Ensembles of\nclassification, regression, survival and probability prediction trees\nare supported. Data from genome-wide association studies can be analyzed\nefficiently. In addition to data frames, datasets of class 'gwaa.data'\n(R package 'GenABEL') and 'dgCMatrix' (R package 'Matrix') can be\ndirectly analyzed.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ranger_0.11.1.tar.gz" ], "version": "0.11.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ranger_0.11.2.tar.gz" ], "version": "0.11.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ranger_0.12.1.tar.gz" ], "version": "0.12.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ranger_0.13.1.tar.gz" ], "version": "0.13.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ranger_0.14.1.tar.gz" ], "version": "0.14.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ranger_0.15.1.tar.gz" ], "version": "0.15.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ranger_0.16.0.tar.gz" ], "version": "0.16.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ranger_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ranger_0.5.0.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ranger_0.6.0.tar.gz" ], "version": "0.6.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ranger_0.7.0.tar.gz" ], "version": "0.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ranger_0.8.0.tar.gz" ], "version": "0.8.0" } ] }, "r-rann": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RANN_2.6.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RANN" ], "licenses": [], "maintainers": [], "name": "r-rann", "patches": [], "summary": "Fast Nearest Neighbour Search (Wraps ANN Library) Using L2 Metric. Finds\nthe k nearest neighbours for every point in a given dataset in O(N log\nN) time using Arya and Mount's ANN library (v1.1.3). There is support\nfor approximate as well as exact searches, fixed radius searches and\n'bd' as well as 'kd' trees. The distance is computed using the L2\n(Euclidean) metric. Please see package 'RANN.L1' for the same\nfunctionality using the L1 (Manhattan, taxicab) metric.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RANN_2.6.1.tar.gz" ], "version": "2.6.1" } ] }, "r-rapidjsonr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rapidjsonr_1.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rapidjsonr" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-rapidjsonr", "patches": [], "summary": "'Rapidjson' C++ Header Files. Provides JSON parsing capability through\nthe 'Rapidjson' 'C++' header-only library.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rapidjsonr_1.2.0.tar.gz" ], "version": "1.2.0" } ] }, "r-rapiserialize": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RApiSerialize_0.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/RApiSerialize_0.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/RApiSerialize_0.1.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RApiSerialize" ], "licenses": [], "maintainers": [ "dorton21" ], "name": "r-rapiserialize", "patches": [], "summary": "R API Serialization. This package provides other packages with access to\nthe internal R serialization code. Access to this code is provided at\nthe C function level by using the registration of native function\nmechanism. Client packages simply include a single header file\nRApiSerializeAPI.h provided by this package. This packages builds on the\nRhpc package by Junji Nakano and Ei-ji Nakama which also includes a\n(partial) copy of the file src/main/serialize.c from R itself. The R\nCore group is the original author of the serialization code made\navailable by this package.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RApiSerialize_0.1.0.tar.gz" ], "version": "0.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RApiSerialize_0.1.2.tar.gz" ], "version": "0.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RApiSerialize_0.1.3.tar.gz" ], "version": "0.1.3" } ] }, "r-rappdirs": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rappdirs_0.3.3.tar.gz", "https://cloud.r-project.org/src/contrib/rappdirs_0.3.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rappdirs" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-rappdirs", "patches": [], "summary": "Application Directories: Determine Where to Save Data, Caches, and Logs.\nAn easy way to determine which directories on the users computer you\nshould use to save data, caches and logs. A port of Python's 'Appdirs'\n() to R.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rappdirs_0.3.1.tar.gz" ], "version": "0.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rappdirs_0.3.3.tar.gz" ], "version": "0.3.3" } ] }, "r-raster": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-rcpp", "r-sp", "r-terra" ], "downloads": [ "https://cloud.r-project.org/src/contrib/raster_3.6-26.tar.gz", "https://cloud.r-project.org/src/contrib/raster_3.6-20.tar.gz", "https://cloud.r-project.org/src/contrib/raster_3.6-3.tar.gz", "https://cloud.r-project.org/src/contrib/raster_3.5-15.tar.gz", "https://cloud.r-project.org/src/contrib/raster_3.5-11.tar.gz", "https://cloud.r-project.org/src/contrib/raster_3.4-5.tar.gz", "https://cloud.r-project.org/src/contrib/raster_2.9-23.tar.gz", "https://cloud.r-project.org/src/contrib/raster_2.9-22.tar.gz", "https://cloud.r-project.org/src/contrib/raster_2.5-8.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=raster" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-raster", "patches": [], "summary": "Geographic Data Analysis and Modeling. Reading, writing, manipulating,\nanalyzing and modeling of spatial data. The package implements basic and\nhigh-level functions for raster data and for vector data operations such\nas intersections. See the manual and tutorials on\n to get started.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/raster_2.5-8.tar.gz" ], "version": "2.5-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/raster_2.9-22.tar.gz" ], "version": "2.9-22" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/raster_2.9-23.tar.gz" ], "version": "2.9-23" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/raster_3.4-5.tar.gz" ], "version": "3.4-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/raster_3.5-11.tar.gz" ], "version": "3.5-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/raster_3.5-15.tar.gz" ], "version": "3.5-15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/raster_3.6-20.tar.gz" ], "version": "3.6-20" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/raster_3.6-26.tar.gz" ], "version": "3.6-26" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/raster_3.6-3.tar.gz" ], "version": "3.6-3" } ] }, "r-rbgl": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-bh", "r-graph" ], "downloads": [ "https://git.bioconductor.org/packages/RBGL" ], "homepages": [ "https://bioconductor.org/packages/RBGL" ], "licenses": [ "BSL-1.0" ], "maintainers": [], "name": "r-rbgl", "patches": [], "summary": "An interface to the BOOST graph library. A fairly extensive and\ncomprehensive interface to the graph algorithms contained in the BOOST\nlibrary.\n", "version": [ { "repositories": [ { "commit": "93e8fcfafec8f1cd5638fe30dc0f9506d15b49c0", "type": "git", "url": "https://git.bioconductor.org/packages/RBGL" } ], "version": "1.52.0" }, { "repositories": [ { "commit": "e9c743d380e83c155495cb8732102f01f213c905", "type": "git", "url": "https://git.bioconductor.org/packages/RBGL" } ], "version": "1.54.0" }, { "repositories": [ { "commit": "a1fa9d89c6a3401892c5dd1493df6a14031f0912", "type": "git", "url": "https://git.bioconductor.org/packages/RBGL" } ], "version": "1.56.0" }, { "repositories": [ { "commit": "086ad0c6bab7be29311b6ae14fd39df7a21331a6", "type": "git", "url": "https://git.bioconductor.org/packages/RBGL" } ], "version": "1.58.2" }, { "repositories": [ { "commit": "ef24c17c411659b8f030602bd9781c534d6ec93b", "type": "git", "url": "https://git.bioconductor.org/packages/RBGL" } ], "version": "1.60.0" }, { "repositories": [ { "commit": "bf0c111dbc231de6d3423c28e115b54fb010e1ea", "type": "git", "url": "https://git.bioconductor.org/packages/RBGL" } ], "version": "1.66.0" }, { "repositories": [ { "commit": "9cfd5fdad4f1f438ff748317f32e822aede8921b", "type": "git", "url": "https://git.bioconductor.org/packages/RBGL" } ], "version": "1.70.0" }, { "repositories": [ { "commit": "a86f3102f2795e1ffb530bb061247e3a42ca22f7", "type": "git", "url": "https://git.bioconductor.org/packages/RBGL" } ], "version": "1.72.0" }, { "repositories": [ { "commit": "e698db897b719992a8c0747138735c0e7d9dfb21", "type": "git", "url": "https://git.bioconductor.org/packages/RBGL" } ], "version": "1.74.0" }, { "repositories": [ { "commit": "18b7cc5f002435aa83e8b693e7bf269fc0b096a5", "type": "git", "url": "https://git.bioconductor.org/packages/RBGL" } ], "version": "1.76.0" } ] }, "r-rbibutils": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rbibutils_2.2.16.tar.gz", "https://cloud.r-project.org/src/contrib/rbibutils_2.2.13.tar.gz", "https://cloud.r-project.org/src/contrib/rbibutils_2.2.9.tar.gz", "https://cloud.r-project.org/src/contrib/rbibutils_2.2.8.tar.gz", "https://cloud.r-project.org/src/contrib/rbibutils_2.2.7.tar.gz", "https://cloud.r-project.org/src/contrib/rbibutils_2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rbibutils" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-rbibutils", "patches": [], "summary": "Convert Between Bibliography Formats. Converts between a number of\nbibliography formats, including 'BibTeX', 'BibLaTeX' and 'Bibentry'.\nIncludes a port of the 'bibutils' utilities by Chris Putnam\n. Supports all bibliography\nformats and character encodings implemented in 'bibutils'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rbibutils_2.0.tar.gz" ], "version": "2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rbibutils_2.2.13.tar.gz" ], "version": "2.2.13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rbibutils_2.2.16.tar.gz" ], "version": "2.2.16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rbibutils_2.2.7.tar.gz" ], "version": "2.2.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rbibutils_2.2.8.tar.gz" ], "version": "2.2.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rbibutils_2.2.9.tar.gz" ], "version": "2.2.9" } ] }, "r-rbokeh": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-digest", "r-ggplot2", "r-gistr", "r-hexbin", "r-htmlwidgets", "r-jsonlite", "r-lazyeval", "r-magrittr", "r-maps", "r-pryr", "r-scales" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rbokeh_0.5.2.tar.gz", "https://cloud.r-project.org/src/contrib/rbokeh_0.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/rbokeh_0.5.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rbokeh" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "r-rbokeh", "patches": [], "summary": "R Interface for Bokeh. A native R plotting library that provides a\nflexible declarative interface for creating interactive web-based\ngraphics, backed by the Bokeh visualization library\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rbokeh_0.5.0.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rbokeh_0.5.1.tar.gz" ], "version": "0.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rbokeh_0.5.2.tar.gz" ], "version": "0.5.2" } ] }, "r-rcmdcheck": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-callr", "r-cli", "r-crayon", "r-curl", "r-desc", "r-digest", "r-pkgbuild", "r-prettyunits", "r-r6", "r-rprojroot", "r-sessioninfo", "r-withr", "r-xopen" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rcmdcheck_1.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/rcmdcheck_1.3.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rcmdcheck" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-rcmdcheck", "patches": [], "summary": "Run 'R CMD check' from 'R' and Capture Results. Run 'R CMD check' from\n'R' and capture the results of the individual checks. Supports running\nchecks in the background, timeouts, pretty printing and comparing check\nresults.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rcmdcheck_1.3.3.tar.gz" ], "version": "1.3.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rcmdcheck_1.4.0.tar.gz" ], "version": "1.4.0" } ] }, "r-rcolorbrewer": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RColorBrewer_1.1-3.tar.gz", "https://cloud.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RColorBrewer" ], "licenses": [], "maintainers": [], "name": "r-rcolorbrewer", "patches": [], "summary": "ColorBrewer Palettes. Provides color schemes for maps (and other\ngraphics) designed by Cynthia Brewer as described at\nhttps://colorbrewer2.org/\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz" ], "version": "1.1-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RColorBrewer_1.1-3.tar.gz" ], "version": "1.1-3" } ] }, "r-rcpp": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_1.0.13-1.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_1.0.13.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_1.0.12.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_1.0.11.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_1.0.10.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_1.0.9.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_1.0.8.3.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_1.0.8.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_1.0.7.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_1.0.6.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_1.0.4.6.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_1.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_1.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_0.12.19.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_0.12.18.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_0.12.17.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_0.12.16.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_0.12.15.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_0.12.14.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_0.12.13.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_0.12.12.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_0.12.11.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_0.12.9.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_0.12.6.tar.gz", "https://cloud.r-project.org/src/contrib/Rcpp_0.12.5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=Rcpp" ], "licenses": [], "maintainers": [], "name": "r-rcpp", "patches": [], "summary": "Seamless R and C++ Integration. The 'Rcpp' package provides R functions\nas well as C++ classes which; offer a seamless integration of R and C++.\nMany R data types and objects can be; mapped back and forth to C++\nequivalents which facilitates both writing of new; code as well as\neasier integration of third-party libraries. Documentation; about 'Rcpp'\nis provided by several vignettes included in this package, via the;\n'Rcpp Gallery' site at , the paper by\nEddelbuettel and; Francois (2011, ), the book\nby Eddelbuettel (2013,; ) and the paper\nby Eddelbuettel and Balamuta (2018,;\n); see 'citation(\"Rcpp\")' for\ndetails.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_0.12.11.tar.gz" ], "version": "0.12.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_0.12.12.tar.gz" ], "version": "0.12.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_0.12.13.tar.gz" ], "version": "0.12.13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_0.12.14.tar.gz" ], "version": "0.12.14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_0.12.15.tar.gz" ], "version": "0.12.15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_0.12.16.tar.gz" ], "version": "0.12.16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_0.12.17.tar.gz" ], "version": "0.12.17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_0.12.18.tar.gz" ], "version": "0.12.18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_0.12.19.tar.gz" ], "version": "0.12.19" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_0.12.5.tar.gz" ], "version": "0.12.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_0.12.6.tar.gz" ], "version": "0.12.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_0.12.9.tar.gz" ], "version": "0.12.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_1.0.10.tar.gz" ], "version": "1.0.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_1.0.11.tar.gz" ], "version": "1.0.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_1.0.12.tar.gz" ], "version": "1.0.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_1.0.13.tar.gz" ], "version": "1.0.13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_1.0.13-1.tar.gz" ], "version": "1.0.13-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_1.0.4.6.tar.gz" ], "version": "1.0.4.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_1.0.6.tar.gz" ], "version": "1.0.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_1.0.7.tar.gz" ], "version": "1.0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_1.0.8.tar.gz" ], "version": "1.0.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_1.0.8.3.tar.gz" ], "version": "1.0.8.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rcpp_1.0.9.tar.gz" ], "version": "1.0.9" } ] }, "r-rcppannoy": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RcppAnnoy_0.0.22.tar.gz", "https://cloud.r-project.org/src/contrib/RcppAnnoy_0.0.20.tar.gz", "https://cloud.r-project.org/src/contrib/RcppAnnoy_0.0.19.tar.gz", "https://cloud.r-project.org/src/contrib/RcppAnnoy_0.0.18.tar.gz", "https://cloud.r-project.org/src/contrib/RcppAnnoy_0.0.12.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RcppAnnoy" ], "licenses": [], "maintainers": [], "name": "r-rcppannoy", "patches": [], "summary": "'Rcpp' Bindings for 'Annoy', a Library for Approximate Nearest\nNeighbors. 'Annoy' is a small C++ library for Approximate Nearest\nNeighbors written for efficient memory usage as well an ability to load\nfrom / save to disk. This package provides an R interface by relying on\nthe 'Rcpp' package, exposing the same interface as the original Python\nwrapper to 'Annoy'. See for more on\n'Annoy'. 'Annoy' is released under Version 2.0 of the Apache License.\nAlso included is a small Windows port of 'mmap' which is released under\nthe MIT license.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppAnnoy_0.0.12.tar.gz" ], "version": "0.0.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppAnnoy_0.0.18.tar.gz" ], "version": "0.0.18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppAnnoy_0.0.19.tar.gz" ], "version": "0.0.19" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppAnnoy_0.0.20.tar.gz" ], "version": "0.0.20" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppAnnoy_0.0.22.tar.gz" ], "version": "0.0.22" } ] }, "r-rcpparmadillo": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RcppArmadillo_14.0.0-1.tar.gz", "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.12.4.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.12.2.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.11.4.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.11.1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.10.8.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.10.7.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.10.7.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.10.1.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.9.600.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.9.400.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.8.100.1.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RcppArmadillo" ], "licenses": [], "maintainers": [], "name": "r-rcpparmadillo", "patches": [], "summary": "'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library.\n'Armadillo' is a templated C++ linear algebra library (by Conrad;\nSanderson) that aims towards a good balance between speed and ease of;\nuse. Integer, floating point and complex numbers are supported, as; well\nas a subset of trigonometric and statistics functions. Various; matrix\ndecompositions are provided through optional integration with; LAPACK\nand ATLAS libraries. The 'RcppArmadillo' package includes the; header\nfiles from the templated 'Armadillo' library. Thus users do; not need to\ninstall 'Armadillo' itself in order to use; 'RcppArmadillo'. From\nrelease 7.800.0 on, 'Armadillo' is licensed; under Apache License 2;\nprevious releases were under licensed as MPL; 2.0 from version 3.800.0\nonwards and LGPL-3 prior to that\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.10.1.2.2.tar.gz" ], "version": "0.10.1.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.10.7.3.0.tar.gz" ], "version": "0.10.7.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.10.7.5.0.tar.gz" ], "version": "0.10.7.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.10.8.1.0.tar.gz" ], "version": "0.10.8.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.11.1.1.0.tar.gz" ], "version": "0.11.1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.11.4.0.1.tar.gz" ], "version": "0.11.4.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.12.2.0.0.tar.gz" ], "version": "0.12.2.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.12.4.0.0.tar.gz" ], "version": "0.12.4.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.8.100.1.0.tar.gz" ], "version": "0.8.100.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.9.400.3.0.tar.gz" ], "version": "0.9.400.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppArmadillo_0.9.600.4.0.tar.gz" ], "version": "0.9.600.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppArmadillo_14.0.0-1.tar.gz" ], "version": "14.0.0-1" } ] }, "r-rcppblaze": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-bh", "r-matrix", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RcppBlaze_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/RcppBlaze_0.2.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RcppBlaze" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "r-rcppblaze", "patches": [], "summary": "'Blaze' is an open-source, high-performance C++ math library for dense\nand sparse arithmetic. With its state-of-the-art Smart Expression\nTemplate implementation 'Blaze' combines the elegance and ease of use of\na domain-specific language with 'HPC'-grade performance, making it one\nof the most intuitive and fastest C++ math libraries available. The\n'Blaze' library offers: - high performance through the integration of\n'BLAS' libraries and manually tuned 'HPC' math kernels - vectorization\nby 'SSE', 'SSE2', 'SSE3', 'SSSE3', 'SSE4', 'AVX', 'AVX2', 'AVX-512',\n'FMA', and 'SVML' - parallel execution by 'OpenMP', C++11 threads and\n'Boost' threads ('Boost' threads are disabled in 'RcppBlaze') - the\nintuitive and easy to use API of a domain specific language - unified\narithmetic with dense and sparse vectors and matrices - thoroughly\ntested matrix and vector arithmetic - completely portable, high quality\nC++ source code. The 'RcppBlaze' package includes the header files from\nthe 'Blaze' library with disabling some functionalities related to link\nto the thread and system libraries which make 'RcppBlaze' be a header-\nonly library. Therefore, users do not need to install 'Blaze' and the\ndependency 'Boost'. 'Blaze' is licensed under the New (Revised) BSD\nlicense, while 'RcppBlaze' (the 'Rcpp' bindings/bridge to 'Blaze') is\nlicensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.\nNote that since 'Blaze' has committed to 'C++14' commit to 'C++14' which\ndoes not used by most R users from version 3.0, we will use the version\n2.6 of 'Blaze' which is 'C++98' compatible to support the most compilers\nand system.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppBlaze_0.2.2.tar.gz" ], "version": "0.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppBlaze_1.0.1.tar.gz" ], "version": "1.0.1" } ] }, "r-rcppcctz": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RcppCCTZ_0.2.12.tar.gz", "https://cloud.r-project.org/src/contrib/RcppCCTZ_0.2.11.tar.gz", "https://cloud.r-project.org/src/contrib/RcppCCTZ_0.2.10.tar.gz", "https://cloud.r-project.org/src/contrib/RcppCCTZ_0.2.9.tar.gz", "https://cloud.r-project.org/src/contrib/RcppCCTZ_0.2.6.tar.gz", "https://cloud.r-project.org/src/contrib/RcppCCTZ_0.2.4.tar.gz", "https://cloud.r-project.org/src/contrib/RcppCCTZ_0.2.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RcppCCTZ" ], "licenses": [], "maintainers": [], "name": "r-rcppcctz", "patches": [], "summary": "'Rcpp' Bindings for the 'CCTZ' Library. 'Rcpp' Access to the 'CCTZ'\ntimezone library is provided. 'CCTZ' is a C++ library for translating\nbetween absolute and civil times using the rules of a time zone. The\n'CCTZ' source code, released under the Apache 2.0 License, is included\nin this package. See for more details.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppCCTZ_0.2.10.tar.gz" ], "version": "0.2.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppCCTZ_0.2.11.tar.gz" ], "version": "0.2.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppCCTZ_0.2.12.tar.gz" ], "version": "0.2.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppCCTZ_0.2.3.tar.gz" ], "version": "0.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppCCTZ_0.2.4.tar.gz" ], "version": "0.2.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppCCTZ_0.2.6.tar.gz" ], "version": "0.2.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppCCTZ_0.2.9.tar.gz" ], "version": "0.2.9" } ] }, "r-rcppcnpy": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-rcpp", "zlib-api" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RcppCNPy_0.2.12.tar.gz", "https://cloud.r-project.org/src/contrib/RcppCNPy_0.2.11.tar.gz", "https://cloud.r-project.org/src/contrib/RcppCNPy_0.2.10.tar.gz", "https://cloud.r-project.org/src/contrib/RcppCNPy_0.2.9.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RcppCNPy" ], "licenses": [ "BitTorrent-1.0" ], "maintainers": [], "name": "r-rcppcnpy", "patches": [], "summary": "Read-Write Support for 'NumPy' Files via 'Rcpp'. The 'cnpy' library\nwritten by Carl Rogers provides read and write facilities for files\ncreated with (or for) the 'NumPy' extension for 'Python'. Vectors and\nmatrices of numeric types can be read or written to and from files as\nwell as compressed files. Support for integer files is available if the\npackage has been built with -std=c++11 which should be the default on\nall platforms since the release of R 3.3.0.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppCNPy_0.2.10.tar.gz" ], "version": "0.2.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppCNPy_0.2.11.tar.gz" ], "version": "0.2.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppCNPy_0.2.12.tar.gz" ], "version": "0.2.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppCNPy_0.2.9.tar.gz" ], "version": "0.2.9" } ] }, "r-rcppdate": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RcppDate_0.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/RcppDate_0.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RcppDate" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-rcppdate", "patches": [], "summary": "'date' C++ Header Library for Date and Time Functionality. 'date' is a\nC++ header library offering extensive date and time functionality for\nthe C++11, C++14 and C++17 standards written by Howard Hinnant and\nreleased under the MIT license. A slightly modified version has been\naccepted (along with 'tz.h') as part of C++20. This package regroups all\nheader files from the upstream repository by Howard Hinnant so that\nother R packages can use them in their C++ code. At present, few of the\ntypes have explicit 'Rcpp' wrapper though these may be added as needed.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppDate_0.0.1.tar.gz" ], "version": "0.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppDate_0.0.3.tar.gz" ], "version": "0.0.3" } ] }, "r-rcppde": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-rcpp", "r-rcpparmadillo" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RcppDE_0.1.7.tar.gz", "https://cloud.r-project.org/src/contrib/RcppDE_0.1.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RcppDE" ], "licenses": [], "maintainers": [], "name": "r-rcppde", "patches": [], "summary": "Global Optimization by Differential Evolution in C++. An efficient C++\nbased implementation of the 'DEoptim' function which performs global\noptimization by differential evolution. Its creation was motivated by\ntrying to see if the old approximation \"easier, shorter, faster: pick\nany two\" could in fact be extended to achieving all three goals while\nmoving the code from plain old C to modern C++. The initial version did\nin fact do so, but a good part of the gain was due to an implicit code\nreview which eliminated a few inefficiencies which have since been\neliminated in 'DEoptim'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppDE_0.1.6.tar.gz" ], "version": "0.1.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppDE_0.1.7.tar.gz" ], "version": "0.1.7" } ] }, "r-rcppeigen": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-matrix", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RcppEigen_0.3.4.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/RcppEigen_0.3.4.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/RcppEigen_0.3.3.9.3.tar.gz", "https://cloud.r-project.org/src/contrib/RcppEigen_0.3.3.9.2.tar.gz", "https://cloud.r-project.org/src/contrib/RcppEigen_0.3.3.9.1.tar.gz", "https://cloud.r-project.org/src/contrib/RcppEigen_0.3.3.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/RcppEigen_0.3.3.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/RcppEigen_0.3.3.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/RcppEigen_0.3.2.9.0.tar.gz", "https://cloud.r-project.org/src/contrib/RcppEigen_0.3.2.8.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RcppEigen" ], "licenses": [ "MPL-2.0" ], "maintainers": [], "name": "r-rcppeigen", "patches": [], "summary": "'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library. R\nand 'Eigen' integration using 'Rcpp'. 'Eigen' is a C++ template library\nfor linear algebra: matrices, vectors, numerical solvers and related\nalgorithms. It supports dense and sparse matrices on integer, floating\npoint and complex numbers, decompositions of such matrices, and\nsolutions of linear systems. Its performance on many algorithms is\ncomparable with some of the best implementations based on 'Lapack' and\nlevel-3 'BLAS'. The 'RcppEigen' package includes the header files from\nthe 'Eigen' C++ template library (currently version 3.2.8). Thus users\ndo not need to install 'Eigen' itself in order to use 'RcppEigen'. Since\nversion 3.1.1, 'Eigen' is licensed under the Mozilla Public License\n(version 2); earlier version were licensed under the GNU LGPL version 3\nor later. 'RcppEigen' (the 'Rcpp' bindings/bridge to 'Eigen') is\nlicensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppEigen_0.3.2.8.1.tar.gz" ], "version": "0.3.2.8.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppEigen_0.3.2.9.0.tar.gz" ], "version": "0.3.2.9.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppEigen_0.3.3.3.1.tar.gz" ], "version": "0.3.3.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppEigen_0.3.3.4.0.tar.gz" ], "version": "0.3.3.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppEigen_0.3.3.5.0.tar.gz" ], "version": "0.3.3.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppEigen_0.3.3.9.1.tar.gz" ], "version": "0.3.3.9.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppEigen_0.3.3.9.2.tar.gz" ], "version": "0.3.3.9.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppEigen_0.3.3.9.3.tar.gz" ], "version": "0.3.3.9.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppEigen_0.3.4.0.1.tar.gz" ], "version": "0.3.4.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppEigen_0.3.4.0.2.tar.gz" ], "version": "0.3.4.0.2" } ] }, "r-rcppensmallen": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-rcpp", "r-rcpparmadillo" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RcppEnsmallen_0.2.21.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/RcppEnsmallen_0.2.19.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RcppEnsmallen" ], "licenses": [], "maintainers": [], "name": "r-rcppensmallen", "patches": [], "summary": "Rcpp integration for the Ensmallen templated C++ mathematical\noptimization library.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppEnsmallen_0.2.19.0.1.tar.gz" ], "version": "0.2.19.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppEnsmallen_0.2.21.1.1.tar.gz" ], "version": "0.2.21.1.1" } ] }, "r-rcppgsl": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gsl", "r", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RcppGSL_0.3.13.tar.gz", "https://cloud.r-project.org/src/contrib/RcppGSL_0.3.12.tar.gz", "https://cloud.r-project.org/src/contrib/RcppGSL_0.3.11.tar.gz", "https://cloud.r-project.org/src/contrib/RcppGSL_0.3.10.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RcppGSL" ], "licenses": [], "maintainers": [], "name": "r-rcppgsl", "patches": [], "summary": "'Rcpp' Integration for 'GNU GSL' Vectors and Matrices. 'Rcpp'\nintegration for 'GNU GSL' vectors and matrices The 'GNU Scientific\nLibrary' (or 'GSL') is a collection of numerical routines for scientific\ncomputing. It is particularly useful for C and C++ programs as it\nprovides a standard C interface to a wide range of mathematical\nroutines. There are over 1000 functions in total with an extensive test\nsuite. The 'RcppGSL' package provides an easy-to-use interface between\n'GSL' data structures and R using concepts from 'Rcpp' which is itself a\npackage that eases the interfaces between R and C++. This package also\nserves as a prime example of how to build a package that uses 'Rcpp' to\nconnect to another third-party library. The 'autoconf' script, 'inline'\nplugin and example package can all be used as a stanza to write a\nsimilar package against another library.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppGSL_0.3.10.tar.gz" ], "version": "0.3.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppGSL_0.3.11.tar.gz" ], "version": "0.3.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppGSL_0.3.12.tar.gz" ], "version": "0.3.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppGSL_0.3.13.tar.gz" ], "version": "0.3.13" } ] }, "r-rcpphnsw": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RcppHNSW_0.6.0.tar.gz", "https://cloud.r-project.org/src/contrib/RcppHNSW_0.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/RcppHNSW_0.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/RcppHNSW_0.1.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RcppHNSW" ], "licenses": [], "maintainers": [], "name": "r-rcpphnsw", "patches": [], "summary": "'Rcpp' Bindings for 'hnswlib', a Library for Approximate\nNearestNeighbors. 'Hnswlib' is a C++ library for Approximate Nearest\nNeighbors. This ; package provides a minimal R interface by relying on\nthe 'Rcpp' package. See ; for more\non 'hnswlib'. 'hnswlib' is ; released under Version 2.0 of the Apache\nLicense.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppHNSW_0.1.0.tar.gz" ], "version": "0.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppHNSW_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppHNSW_0.4.1.tar.gz" ], "version": "0.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppHNSW_0.6.0.tar.gz" ], "version": "0.6.0" } ] }, "r-rcppml": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-matrix", "r-rcpp", "r-rcppeigen" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RcppML_0.3.7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RcppML" ], "licenses": [], "maintainers": [], "name": "r-rcppml", "patches": [], "summary": "Rcpp Machine Learning Library Fast machine learning algorithms including\nmatrix factorization and divisive clustering for large sparse and dense\nmatrices.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppML_0.3.7.tar.gz" ], "version": "0.3.7" } ] }, "r-rcppparallel": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "tbb" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RcppParallel_5.1.11-1.tar.gz", "https://cloud.r-project.org/src/contrib/RcppParallel_5.1.9.tar.gz", "https://cloud.r-project.org/src/contrib/RcppParallel_5.1.7.tar.gz", "https://cloud.r-project.org/src/contrib/RcppParallel_5.1.5.tar.gz", "https://cloud.r-project.org/src/contrib/RcppParallel_5.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/RcppParallel_4.4.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RcppParallel" ], "licenses": [], "maintainers": [], "name": "r-rcppparallel", "patches": [ "asclang.patch when %fj" ], "summary": "Parallel Programming Tools for 'Rcpp'. High level functions for parallel\nprogramming with 'Rcpp'. For example, the 'parallelFor()' function can\nbe used to convert the work of a standard serial \"for\" loop into a\nparallel one and the 'parallelReduce()' function can be used for\naccumulating aggregate or other values.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppParallel_4.4.3.tar.gz" ], "version": "4.4.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppParallel_5.0.2.tar.gz" ], "version": "5.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppParallel_5.1.11-1.tar.gz" ], "version": "5.1.11-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppParallel_5.1.5.tar.gz" ], "version": "5.1.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppParallel_5.1.7.tar.gz" ], "version": "5.1.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppParallel_5.1.9.tar.gz" ], "version": "5.1.9" } ] }, "r-rcppprogress": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RcppProgress_0.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/RcppProgress_0.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/RcppProgress_0.4.tar.gz", "https://cloud.r-project.org/src/contrib/RcppProgress_0.3.tar.gz", "https://cloud.r-project.org/src/contrib/RcppProgress_0.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/RcppProgress_0.2.tar.gz", "https://cloud.r-project.org/src/contrib/RcppProgress_0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RcppProgress" ], "licenses": [], "maintainers": [], "name": "r-rcppprogress", "patches": [], "summary": "An Interruptible Progress Bar with OpenMP Support for C++ in R Packages.\nAllows to display a progress bar in the R console for long running\ncomputations taking place in c++ code, and support for interrupting\nthose computations even in multithreaded code, typically using OpenMP.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppProgress_0.1.tar.gz" ], "version": "0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppProgress_0.2.tar.gz" ], "version": "0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppProgress_0.2.1.tar.gz" ], "version": "0.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppProgress_0.3.tar.gz" ], "version": "0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppProgress_0.4.tar.gz" ], "version": "0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppProgress_0.4.1.tar.gz" ], "version": "0.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppProgress_0.4.2.tar.gz" ], "version": "0.4.2" } ] }, "r-rcpproll": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RcppRoll_0.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/RcppRoll_0.3.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RcppRoll" ], "licenses": [], "maintainers": [], "name": "r-rcpproll", "patches": [], "summary": "Efficient Rolling / Windowed Operations. Provides fast and efficient\nroutines for common rolling / windowed operations. Routines for the\nefficient computation of windowed mean, median, sum, product, minimum,\nmaximum, standard deviation and variance are provided.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppRoll_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppRoll_0.3.1.tar.gz" ], "version": "0.3.1" } ] }, "r-rcpptoml": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RcppTOML_0.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/RcppTOML_0.1.7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RcppTOML" ], "licenses": [ "JSON" ], "maintainers": [], "name": "r-rcpptoml", "patches": [], "summary": "'Rcpp' Bindings to Parser for Tom's Obvious Markup Language. The\nconfiguration format defined by 'TOML' (which expands to \"Tom's Obvious\nMarkup Language\") specifies an excellent format (described at\n) suitable for both human editing as well as the\ncommon uses of a machine-readable format. This package uses 'Rcpp' to\nconnect the 'cpptoml' parser written by Chase Geigle (in C++11) to R.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppTOML_0.1.7.tar.gz" ], "version": "0.1.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppTOML_0.2.2.tar.gz" ], "version": "0.2.2" } ] }, "r-rcppziggurat": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gsl", "r", "r-rcpp", "r-rcppgsl" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RcppZiggurat_0.1.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RcppZiggurat" ], "licenses": [], "maintainers": [], "name": "r-rcppziggurat", "patches": [], "summary": "'Rcpp' Integration of Different \"Ziggurat\" Normal RNG Implementations.\nThe Ziggurat generator for normally distributed random numbers,\noriginally proposed by Marsaglia and Tsang (2000,\n) has been improved upon a few times starting\nwith Leong et al (2005, ). This package\nprovides an aggregation in order to compare different implementations in\norder to provide an 'faster but good enough' alternative for use with R\nand C++ code.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RcppZiggurat_0.1.6.tar.gz" ], "version": "0.1.6" } ] }, "r-rcurl": { "alias": [], "categories": [], "dependencies": [ "c", "curl", "gmake", "icu4c", "r", "r-bitops" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RCurl_1.98-1.16.tar.gz", "https://cloud.r-project.org/src/contrib/RCurl_1.98-1.12.tar.gz", "https://cloud.r-project.org/src/contrib/RCurl_1.98-1.9.tar.gz", "https://cloud.r-project.org/src/contrib/RCurl_1.98-1.6.tar.gz", "https://cloud.r-project.org/src/contrib/RCurl_1.98-1.5.tar.gz", "https://cloud.r-project.org/src/contrib/RCurl_1.98-1.2.tar.gz", "https://cloud.r-project.org/src/contrib/RCurl_1.95-4.12.tar.gz", "https://cloud.r-project.org/src/contrib/RCurl_1.95-4.8.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RCurl" ], "licenses": [], "maintainers": [], "name": "r-rcurl", "patches": [], "summary": "General Network (HTTP/FTP/...) Client Interface for R. A wrapper for\n'libcurl' Provides functions to allow one\nto compose general HTTP requests and provides convenient functions to\nfetch URIs, get & post forms, etc. and process the results returned by\nthe Web server. This provides a great deal of control over the\nHTTP/FTP/... connection and the form of the request while providing a\nhigher-level interface than is available just using R socket\nconnections. Additionally, the underlying implementation is robust and\nextensive, supporting FTP/FTPS/TFTP (uploads and downloads), SSL/HTTPS,\ntelnet, dict, ldap, and also supports cookies, redirects,\nauthentication, etc.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RCurl_1.95-4.12.tar.gz" ], "version": "1.95-4.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RCurl_1.95-4.8.tar.gz" ], "version": "1.95-4.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RCurl_1.98-1.12.tar.gz" ], "version": "1.98-1.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RCurl_1.98-1.16.tar.gz" ], "version": "1.98-1.16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RCurl_1.98-1.2.tar.gz" ], "version": "1.98-1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RCurl_1.98-1.5.tar.gz" ], "version": "1.98-1.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RCurl_1.98-1.6.tar.gz" ], "version": "1.98-1.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RCurl_1.98-1.9.tar.gz" ], "version": "1.98-1.9" } ] }, "r-rda": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rda_1.2-1.tar.gz", "https://cloud.r-project.org/src/contrib/rda_1.0.2-2.1.tar.gz", "https://cloud.r-project.org/src/contrib/rda_1.0.2-2.tar.gz", "https://cloud.r-project.org/src/contrib/rda_1.0.2-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rda" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-rda", "patches": [], "summary": "Shrunken Centroids Regularized Discriminant Analysis. Shrunken Centroids\nRegularized Discriminant Analysis for the classification purpose in high\ndimensional data.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rda_1.0.2-1.tar.gz" ], "version": "1.0.2-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rda_1.0.2-2.tar.gz" ], "version": "1.0.2-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rda_1.0.2-2.1.tar.gz" ], "version": "1.0.2-2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rda_1.2-1.tar.gz" ], "version": "1.2-1" } ] }, "r-rdpack": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-bibtex", "r-gbrd", "r-rbibutils" ], "downloads": [ "https://cloud.r-project.org/src/contrib/Rdpack_2.6.1.tar.gz", "https://cloud.r-project.org/src/contrib/Rdpack_2.4.tar.gz", "https://cloud.r-project.org/src/contrib/Rdpack_2.3.tar.gz", "https://cloud.r-project.org/src/contrib/Rdpack_2.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/Rdpack_2.1.tar.gz", "https://cloud.r-project.org/src/contrib/Rdpack_0.11-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=Rdpack" ], "licenses": [], "maintainers": [], "name": "r-rdpack", "patches": [], "summary": "Update and Manipulate Rd Documentation Objects. Functions for\nmanipulation of R documentation objects, including functions reprompt()\nand ereprompt() for updating 'Rd' documentation for functions, methods\nand classes; 'Rd' macros for citations and import of references from\n'bibtex' files for use in 'Rd' files and 'roxygen2' comments; 'Rd'\nmacros for evaluating and inserting snippets of 'R' code and the results\nof its evaluation or creating graphics on the fly; and many functions\nfor manipulation of references and Rd files.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/Rdpack_0.11-0.tar.gz" ], "version": "0.11-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rdpack_2.1.tar.gz" ], "version": "2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rdpack_2.1.3.tar.gz" ], "version": "2.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rdpack_2.3.tar.gz" ], "version": "2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rdpack_2.4.tar.gz" ], "version": "2.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rdpack_2.6.1.tar.gz" ], "version": "2.6.1" } ] }, "r-readbitmap": { "alias": [], "categories": [], "dependencies": [ "gmake", "jpeg", "libpng", "r", "r-bmp", "r-jpeg", "r-png", "r-tiff" ], "downloads": [ "https://cloud.r-project.org/src/contrib/readbitmap_0.1.5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=readbitmap" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-readbitmap", "patches": [], "summary": "Simple Unified Interface to Read Bitmap Images (BMP,JPEG,PNG,TIFF).\nIdentifies and reads Windows BMP, JPEG, PNG, and TIFF format bitmap\nimages. Identification defaults to the use of the magic number embedded\nin the file rather than the file extension. Reading of JPEG and PNG\nimage depends on libjpg and libpng libraries. See file INSTALL for\ndetails if necessary.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/readbitmap_0.1.5.tar.gz" ], "version": "0.1.5" } ] }, "r-readr": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-bh", "r-cli", "r-clipr", "r-cpp11", "r-crayon", "r-hms", "r-lifecycle", "r-r6", "r-rcpp", "r-rlang", "r-tibble", "r-tzdb", "r-vroom" ], "downloads": [ "https://cloud.r-project.org/src/contrib/readr_2.1.5.tar.gz", "https://cloud.r-project.org/src/contrib/readr_2.1.4.tar.gz", "https://cloud.r-project.org/src/contrib/readr_2.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/readr_2.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/readr_2.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/readr_2.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/readr_1.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/readr_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/readr_1.1.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=readr" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-readr", "patches": [], "summary": "Read Rectangular Text Data. The goal of 'readr' is to provide a fast and\nfriendly way to read rectangular data (like 'csv', 'tsv', and 'fwf'). It\nis designed to flexibly parse many types of data found in the wild,\nwhile still cleanly failing when data unexpectedly changes.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/readr_1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/readr_1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/readr_1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/readr_2.0.2.tar.gz" ], "version": "2.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/readr_2.1.1.tar.gz" ], "version": "2.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/readr_2.1.2.tar.gz" ], "version": "2.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/readr_2.1.3.tar.gz" ], "version": "2.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/readr_2.1.4.tar.gz" ], "version": "2.1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/readr_2.1.5.tar.gz" ], "version": "2.1.5" } ] }, "r-readxl": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-cellranger", "r-cpp11", "r-progress", "r-rcpp", "r-tibble" ], "downloads": [ "https://cloud.r-project.org/src/contrib/readxl_1.4.5.tar.gz", "https://cloud.r-project.org/src/contrib/readxl_1.4.3.tar.gz", "https://cloud.r-project.org/src/contrib/readxl_1.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/readxl_1.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/readxl_1.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/readxl_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/readxl_1.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/readxl_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/readxl_1.0.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=readxl" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-readxl", "patches": [], "summary": "Read Excel Files. Import excel files into R. Supports '.xls' via the\nembedded 'libxls' C library \nand '.xlsx' via the embedded 'RapidXML' C++ library\n. Works on Windows, Mac and Linux\nwithout external dependencies.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/readxl_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/readxl_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/readxl_1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/readxl_1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/readxl_1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/readxl_1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/readxl_1.4.2.tar.gz" ], "version": "1.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/readxl_1.4.3.tar.gz" ], "version": "1.4.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/readxl_1.4.5.tar.gz" ], "version": "1.4.5" } ] }, "r-reams": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-leaps", "r-mgcv" ], "downloads": [ "https://cloud.r-project.org/src/contrib/reams_0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=reams" ], "licenses": [], "maintainers": [], "name": "r-reams", "patches": [], "summary": "Resampling-Based Adaptive Model Selection. Resampling methods for\nadaptive linear model selection. These can be thought of as extensions\nof the Akaike information criterion that account for searching among\ncandidate models.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/reams_0.1.tar.gz" ], "version": "0.1" } ] }, "r-recipes": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-clock", "r-dplyr", "r-ellipsis", "r-generics", "r-glue", "r-gower", "r-hardhat", "r-ipred", "r-lifecycle", "r-lubridate", "r-magrittr", "r-matrix", "r-purrr", "r-rlang", "r-tibble", "r-tidyr", "r-tidyselect", "r-timedate", "r-vctrs", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/recipes_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/recipes_1.0.6.tar.gz", "https://cloud.r-project.org/src/contrib/recipes_1.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/recipes_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/recipes_0.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/recipes_0.1.17.tar.gz", "https://cloud.r-project.org/src/contrib/recipes_0.1.15.tar.gz", "https://cloud.r-project.org/src/contrib/recipes_0.1.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=recipes" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-recipes", "patches": [], "summary": "Preprocessing Tools to Create Design Matrices. An extensible framework\nto create and preprocess design matrices. Recipes consist of one or more\ndata manipulation and analysis \"steps\". Statistical parameters for the\nsteps can be estimated from an initial data set and then applied to\nother data sets. The resulting design matrices can then be used as\ninputs into statistical or machine learning models.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/recipes_0.1.15.tar.gz" ], "version": "0.1.15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/recipes_0.1.17.tar.gz" ], "version": "0.1.17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/recipes_0.1.6.tar.gz" ], "version": "0.1.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/recipes_0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/recipes_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/recipes_1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/recipes_1.0.6.tar.gz" ], "version": "1.0.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/recipes_1.1.0.tar.gz" ], "version": "1.1.0" } ] }, "r-reformulas": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-matrix", "r-rdpack" ], "downloads": [ "https://cloud.r-project.org/src/contrib/reformulas_0.4.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=reformulas" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-reformulas", "patches": [], "summary": "Machinery for Processing Random Effect Formulas Takes formulas including\nrandom-effects components (formatted as in 'lme4', 'glmmTMB', etc.) and\nprocesses them. Includes various helper functions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/reformulas_0.4.1.tar.gz" ], "version": "0.4.1" } ] }, "r-registry": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/registry_0.5-1.tar.gz", "https://cloud.r-project.org/src/contrib/registry_0.5.tar.gz", "https://cloud.r-project.org/src/contrib/registry_0.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=registry" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-registry", "patches": [], "summary": "Infrastructure for R Package Registries. Provides a generic\ninfrastructure for creating and using registries.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/registry_0.3.tar.gz" ], "version": "0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/registry_0.5.tar.gz" ], "version": "0.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/registry_0.5-1.tar.gz" ], "version": "0.5-1" } ] }, "r-rematch": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rematch_2.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/rematch_1.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rematch" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-rematch", "patches": [], "summary": "Match Regular Expressions with a Nicer 'API'. A small wrapper on\n'regexpr' to extract the matches and captured groups from the match of a\nregular expression to a character vector.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rematch_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rematch_2.0.0.tar.gz" ], "version": "2.0.0" } ] }, "r-rematch2": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-tibble" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rematch2_2.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/rematch2_2.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/rematch2_2.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/rematch2_2.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rematch2" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-rematch2", "patches": [], "summary": "Tidy Output from Regular Expression Matching. Wrappers on 'regexpr' and\n'gregexpr' to return the match results in tidy data frames.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rematch2_2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rematch2_2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rematch2_2.1.1.tar.gz" ], "version": "2.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rematch2_2.1.2.tar.gz" ], "version": "2.1.2" } ] }, "r-remotes": { "alias": [], "categories": [], "dependencies": [ "git", "gmake", "r", "subversion" ], "downloads": [ "https://cloud.r-project.org/src/contrib/remotes_2.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/remotes_2.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/remotes_2.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/remotes_2.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/remotes_2.1.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=remotes" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-remotes", "patches": [], "summary": "R Package Installation from Remote Repositories, Including 'GitHub'.\nDownload and install R packages stored in 'GitHub', 'BitBucket', or\nplain 'subversion' or 'git' repositories. This package provides the\n'install_*' functions in 'devtools'. Indeed most of the code was copied\nover from 'devtools'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/remotes_2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/remotes_2.1.1.tar.gz" ], "version": "2.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/remotes_2.2.0.tar.gz" ], "version": "2.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/remotes_2.4.2.tar.gz" ], "version": "2.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/remotes_2.5.0.tar.gz" ], "version": "2.5.0" } ] }, "r-renv": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/renv_1.0.7.tar.gz", "https://cloud.r-project.org/src/contrib/renv_0.17.3.tar.gz", "https://cloud.r-project.org/src/contrib/renv_0.16.0.tar.gz", "https://cloud.r-project.org/src/contrib/renv_0.15.5.tar.gz", "https://cloud.r-project.org/src/contrib/renv_0.15.2.tar.gz", "https://cloud.r-project.org/src/contrib/renv_0.15.1.tar.gz", "https://cloud.r-project.org/src/contrib/renv_0.13.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=renv" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-renv", "patches": [], "summary": "Project Environments for R packages. A dependency management toolkit for\nR. Using 'renv', you can create and manage project-local R libraries,\nsave the state of these libraries to a 'lockfile', and later restore\nyour library as required. Together, these tools can help make your\nprojects more isolated, portable, and reproducible.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/renv_0.13.2.tar.gz" ], "version": "0.13.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/renv_0.15.1.tar.gz" ], "version": "0.15.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/renv_0.15.2.tar.gz" ], "version": "0.15.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/renv_0.15.5.tar.gz" ], "version": "0.15.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/renv_0.16.0.tar.gz" ], "version": "0.16.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/renv_0.17.3.tar.gz" ], "version": "0.17.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/renv_1.0.7.tar.gz" ], "version": "1.0.7" } ] }, "r-reordercluster": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-gplots", "r-gtools", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ReorderCluster_2.0.tar.gz", "https://cloud.r-project.org/src/contrib/ReorderCluster_1.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ReorderCluster" ], "licenses": [], "maintainers": [], "name": "r-reordercluster", "patches": [], "summary": "Reordering the dendrogram according to the class labels. Tools for\nperforming the leaf reordering for the dendrogram that preserves the\nhierarchical clustering result and at the same time tries to group\ninstances from the same class together.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ReorderCluster_1.0.tar.gz" ], "version": "1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ReorderCluster_2.0.tar.gz" ], "version": "2.0" } ] }, "r-reportingtools": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotate", "r-annotationdbi", "r-biobase", "r-biocgenerics", "r-category", "r-deseq2", "r-edger", "r-ggbio", "r-ggplot2", "r-gostats", "r-gseabase", "r-hwriter", "r-iranges", "r-knitr", "r-lattice", "r-limma", "r-pfam-db", "r-r-utils", "r-xml" ], "downloads": [ "https://git.bioconductor.org/packages/ReportingTools" ], "homepages": [ "https://bioconductor.org/packages/ReportingTools" ], "licenses": [], "maintainers": [], "name": "r-reportingtools", "patches": [], "summary": "Tools for making reports in various formats. The ReportingTools software\npackage enables users to easily display reports of analysis results\ngenerated from sources such as microarray and sequencing data. The\npackage allows users to create HTML pages that may be viewed on a web\nbrowser such as Safari, or in other formats readable by programs such as\nExcel. Users can generate tables with sortable and filterable columns,\nmake and display plots, and link table entries to other data sources\nsuch as NCBI or larger plots within the HTML page. Using the package,\nusers can also produce a table of contents page to link various reports\ntogether for a particular project that can be viewed in a web browser.\nFor more examples, please visit our site: http:// research-\npub.gene.com/ReportingTools.\n", "version": [ { "repositories": [ { "commit": "b1aa0ea302da7f2993ce8087b1d09c11ddf03663", "type": "git", "url": "https://git.bioconductor.org/packages/ReportingTools" } ], "version": "2.16.0" }, { "repositories": [ { "commit": "b2e379cd5b813d8ccca37ec25f0660deec943622", "type": "git", "url": "https://git.bioconductor.org/packages/ReportingTools" } ], "version": "2.17.3" }, { "repositories": [ { "commit": "77e14ae13fdc16654300852dfd94e6cef58009da", "type": "git", "url": "https://git.bioconductor.org/packages/ReportingTools" } ], "version": "2.20.0" }, { "repositories": [ { "commit": "dce6af6c6a1cddff077fe61368f2c13e5a0e7bab", "type": "git", "url": "https://git.bioconductor.org/packages/ReportingTools" } ], "version": "2.22.1" }, { "repositories": [ { "commit": "d114c658affba9b682a37b4e2caf4341cf8da6cf", "type": "git", "url": "https://git.bioconductor.org/packages/ReportingTools" } ], "version": "2.24.0" }, { "repositories": [ { "commit": "fb9aee416f38cfd308d6d7264ccbcda0467642a7", "type": "git", "url": "https://git.bioconductor.org/packages/ReportingTools" } ], "version": "2.30.0" }, { "repositories": [ { "commit": "fb5aef0b6e1c6166d0f025d9e6ca60e54c68dbaf", "type": "git", "url": "https://git.bioconductor.org/packages/ReportingTools" } ], "version": "2.34.0" }, { "repositories": [ { "commit": "34122d4bde5ce43415f63f2e39e3a088c55282cc", "type": "git", "url": "https://git.bioconductor.org/packages/ReportingTools" } ], "version": "2.36.0" }, { "repositories": [ { "commit": "5c4971eebbaf3577ef20b74bf36c2db4e91561cc", "type": "git", "url": "https://git.bioconductor.org/packages/ReportingTools" } ], "version": "2.38.0" }, { "repositories": [ { "commit": "808af36aa9756be8c907a8669726c90dcd02c73c", "type": "git", "url": "https://git.bioconductor.org/packages/ReportingTools" } ], "version": "2.40.0" } ] }, "r-repr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-base64enc", "r-htmltools", "r-jsonlite", "r-pillar" ], "downloads": [ "https://cloud.r-project.org/src/contrib/repr_1.1.7.tar.gz", "https://cloud.r-project.org/src/contrib/repr_1.1.6.tar.gz", "https://cloud.r-project.org/src/contrib/repr_1.1.4.tar.gz", "https://cloud.r-project.org/src/contrib/repr_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/repr_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/repr_1.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/repr_0.9.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=repr" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-repr", "patches": [], "summary": "Serializable Representations. String and binary representations of\nobjects for several formats and mime types.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/repr_0.9.tar.gz" ], "version": "0.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/repr_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/repr_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/repr_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/repr_1.1.4.tar.gz" ], "version": "1.1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/repr_1.1.6.tar.gz" ], "version": "1.1.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/repr_1.1.7.tar.gz" ], "version": "1.1.7" } ] }, "r-reprex": { "alias": [], "categories": [], "dependencies": [ "gmake", "pandoc", "r", "r-callr", "r-cli", "r-clipr", "r-fs", "r-glue", "r-knitr", "r-lifecycle", "r-rlang", "r-rmarkdown", "r-rstudioapi", "r-whisker", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/reprex_2.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/reprex_2.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/reprex_2.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/reprex_0.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/reprex_0.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/reprex_0.1.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=reprex" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-reprex", "patches": [], "summary": "Prepare Reproducible Example Code via the Clipboard. Convenience wrapper\nthat uses the 'rmarkdown' package to render small snippets of code to\ntarget formats that include both code and output. The goal is to\nencourage the sharing of small, reproducible, and runnable examples on\ncode-oriented websites, such as and\n, or in email. 'reprex' also extracts clean,\nrunnable R code from various common formats, such as copy/paste from an\nR session.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/reprex_0.1.1.tar.gz" ], "version": "0.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reprex_0.2.1.tar.gz" ], "version": "0.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reprex_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reprex_2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reprex_2.0.2.tar.gz" ], "version": "2.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reprex_2.1.1.tar.gz" ], "version": "2.1.1" } ] }, "r-reproducible": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-data-table", "r-dbi", "r-digest", "r-filelock", "r-fpcompare", "r-fs", "r-gdalutilities", "r-glue", "r-lobstr", "r-magrittr", "r-raster", "r-require", "r-rlang", "r-rsqlite", "r-sp", "unrar" ], "downloads": [ "https://cloud.r-project.org/src/contrib/reproducible_2.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/reproducible_1.2.16.tar.gz", "https://cloud.r-project.org/src/contrib/reproducible_1.2.10.tar.gz", "https://cloud.r-project.org/src/contrib/reproducible_1.2.8.tar.gz", "https://cloud.r-project.org/src/contrib/reproducible_1.2.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=reproducible" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [ "dorton21" ], "name": "r-reproducible", "patches": [], "summary": "A Set of Tools that Enhance Reproducibility Beyond Package Management.\nCollection of high-level, machine- and OS-independent tools for making\ndeeply reproducible and reusable content in R. The two workhorse\nfunctions are Cache and prepInputs; these allow for: nested caching,\nrobust to environments, and objects with environments (like functions);\nand data retrieval and processing in continuous workflow environments.\nIn all cases, efforts are made to make the first and subsequent calls of\nfunctions have the same result, but vastly faster at subsequent times by\nway of checksums and digesting. Several features are still under active\ndevelopment, including cloud storage of cached objects, allowing for\nsharing between users. Several advanced options are available, see\n?reproducibleOptions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/reproducible_1.2.10.tar.gz" ], "version": "1.2.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reproducible_1.2.16.tar.gz" ], "version": "1.2.16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reproducible_1.2.4.tar.gz" ], "version": "1.2.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reproducible_1.2.8.tar.gz" ], "version": "1.2.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reproducible_2.1.0.tar.gz" ], "version": "2.1.0" } ] }, "r-require": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-data-table", "r-remotes", "r-sys" ], "downloads": [ "https://cloud.r-project.org/src/contrib/Require_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/Require_0.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/Require_0.1.4.tar.gz", "https://cloud.r-project.org/src/contrib/Require_0.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/Require_0.0.13.tar.gz", "https://cloud.r-project.org/src/contrib/Require_0.0.10.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=Require" ], "licenses": [], "maintainers": [ "dorton21" ], "name": "r-require", "patches": [], "summary": "Installing and Loading R Packages for Reproducible Workflows. A single\nkey function, 'Require' that wraps 'install.packages',\n'remotes::install_github', 'versions::install.versions', and\n'base::require' that allows for reproducible workflows. As with other\nfunctions in a reproducible workflow, this package emphasizes functions\nthat return the same result whether it is the first or subsequent times\nrunning the function. Maturing.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/Require_0.0.10.tar.gz" ], "version": "0.0.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Require_0.0.13.tar.gz" ], "version": "0.0.13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Require_0.1.2.tar.gz" ], "version": "0.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Require_0.1.4.tar.gz" ], "version": "0.1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Require_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Require_1.0.1.tar.gz" ], "version": "1.0.1" } ] }, "r-reshape": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-plyr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/reshape_0.8.9.tar.gz", "https://cloud.r-project.org/src/contrib/reshape_0.8.8.tar.gz", "https://cloud.r-project.org/src/contrib/reshape_0.8.7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=reshape" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-reshape", "patches": [], "summary": "Flexibly Reshape Data. Flexibly restructure and aggregate data using\njust two functions: melt and cast.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/reshape_0.8.7.tar.gz" ], "version": "0.8.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reshape_0.8.8.tar.gz" ], "version": "0.8.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reshape_0.8.9.tar.gz" ], "version": "0.8.9" } ] }, "r-reshape2": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-plyr", "r-rcpp", "r-stringr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/reshape2_1.4.4.tar.gz", "https://cloud.r-project.org/src/contrib/reshape2_1.4.3.tar.gz", "https://cloud.r-project.org/src/contrib/reshape2_1.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/reshape2_1.4.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=reshape2" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-reshape2", "patches": [], "summary": "Flexibly Reshape Data: A Reboot of the Reshape Package. Flexibly\nrestructure and aggregate data using just two functions: melt and dcast\n(or acast).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/reshape2_1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reshape2_1.4.2.tar.gz" ], "version": "1.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reshape2_1.4.3.tar.gz" ], "version": "1.4.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reshape2_1.4.4.tar.gz" ], "version": "1.4.4" } ] }, "r-restfulr": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-rcurl", "r-rjson", "r-s4vectors", "r-xml", "r-yaml" ], "downloads": [ "https://cloud.r-project.org/src/contrib/restfulr_0.0.15.tar.gz", "https://cloud.r-project.org/src/contrib/restfulr_0.0.13.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=restfulr" ], "licenses": [ "Artistic-2.0" ], "maintainers": [], "name": "r-restfulr", "patches": [], "summary": "R Interface to RESTful Web Services. Models a RESTful service as if it\nwere a nested R list.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/restfulr_0.0.13.tar.gz" ], "version": "0.0.13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/restfulr_0.0.15.tar.gz" ], "version": "0.0.15" } ] }, "r-reticulate": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "python", "r", "r-here", "r-jsonlite", "r-matrix", "r-png", "r-rappdirs", "r-rcpp", "r-rcpptoml", "r-rlang", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/reticulate_1.38.0.tar.gz", "https://cloud.r-project.org/src/contrib/reticulate_1.28.tar.gz", "https://cloud.r-project.org/src/contrib/reticulate_1.26.tar.gz", "https://cloud.r-project.org/src/contrib/reticulate_1.25.tar.gz", "https://cloud.r-project.org/src/contrib/reticulate_1.24.tar.gz", "https://cloud.r-project.org/src/contrib/reticulate_1.23.tar.gz", "https://cloud.r-project.org/src/contrib/reticulate_1.18.tar.gz", "https://cloud.r-project.org/src/contrib/reticulate_1.15.tar.gz", "https://cloud.r-project.org/src/contrib/reticulate_1.13.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=reticulate" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "r-reticulate", "patches": [], "summary": "Interface to 'Python'. Interface to 'Python' modules, classes, and\nfunctions. When calling into 'Python', R data types are automatically\nconverted to their equivalent 'Python' types. When values are returned\nfrom 'Python' to R they are converted back to R types. Compatible with\nall versions of 'Python' >= 2.7.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/reticulate_1.13.tar.gz" ], "version": "1.13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reticulate_1.15.tar.gz" ], "version": "1.15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reticulate_1.18.tar.gz" ], "version": "1.18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reticulate_1.23.tar.gz" ], "version": "1.23" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reticulate_1.24.tar.gz" ], "version": "1.24" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reticulate_1.25.tar.gz" ], "version": "1.25" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reticulate_1.26.tar.gz" ], "version": "1.26" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reticulate_1.28.tar.gz" ], "version": "1.28" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/reticulate_1.38.0.tar.gz" ], "version": "1.38.0" } ] }, "r-rex": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-lazyeval", "r-magrittr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rex_1.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/rex_1.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/rex_1.1.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rex" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-rex", "patches": [], "summary": "Friendly Regular Expressions. A friendly interface for the construction\nof regular expressions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rex_1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rex_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rex_1.2.1.tar.gz" ], "version": "1.2.1" } ] }, "r-rfast": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-rcpp", "r-rcpparmadillo", "r-rcppparallel", "r-rcppziggurat" ], "downloads": [ "https://cloud.r-project.org/src/contrib/Rfast_2.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/Rfast_2.0.7.tar.gz", "https://cloud.r-project.org/src/contrib/Rfast_2.0.6.tar.gz", "https://cloud.r-project.org/src/contrib/Rfast_2.0.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=Rfast" ], "licenses": [], "maintainers": [], "name": "r-rfast", "patches": [], "summary": "A Collection of Efficient and Extremely Fast R Functions. A collection\nof fast (utility) functions for data analysis. Column- and row- wise\nmeans, medians, variances, minimums, maximums, many t, F and G-square\ntests, many regressions (normal, logistic, Poisson), are some of the\nmany fast functions. References: a) Tsagris M., Papadakis M. (2018).\nTaking R to its limits: 70+ tips. PeerJ Preprints 6:e26605v1\n. b) Tsagris M. and Papadakis M.\n(2018). Forward regression in R: from the extreme slow to the extreme\nfast. Journal of Data Science, 16(4): 771-780.\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/Rfast_2.0.4.tar.gz" ], "version": "2.0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rfast_2.0.6.tar.gz" ], "version": "2.0.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rfast_2.0.7.tar.gz" ], "version": "2.0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rfast_2.1.0.tar.gz" ], "version": "2.1.0" } ] }, "r-rferns": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rFerns_5.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/rFerns_4.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/rFerns_3.0.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rFerns" ], "licenses": [], "maintainers": [], "name": "r-rferns", "patches": [], "summary": "Random Ferns Classifier. Provides the random ferns classifier by\nOzuysal, Calonder, Lepetit and Fua (2009) ,\nmodified for generic and multi-label classification and featuring OOB\nerror approximation and importance measure as introduced in Kursa (2014)\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rFerns_3.0.0.tar.gz" ], "version": "3.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rFerns_4.0.0.tar.gz" ], "version": "4.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rFerns_5.0.0.tar.gz" ], "version": "5.0.0" } ] }, "r-rgdal": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gdal", "gmake", "proj", "r", "r-sp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rgdal_1.6-7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rgdal" ], "licenses": [], "maintainers": [], "name": "r-rgdal", "patches": [], "summary": "Bindings for the 'Geospatial' Data Abstraction Library. Provides\nbindings to the 'Geospatial' Data Abstraction Library ('GDAL') (>=\n1.11.4) and access to projection/transformation operations from the\n'PROJ' library. Use is made of classes defined in the 'sp' package.\nRaster and vector map data can be imported into R, and raster and vector\n'sp' objects exported. The 'GDAL' and 'PROJ' libraries are external to\nthe package, and, when installing the package from source, must be\ncorrectly installed first; it is important that 'GDAL' < 3 be matched\nwith 'PROJ' < 6. From 'rgdal' 1.5-8, installed with to 'GDAL' >=3,\n'PROJ' >=6 and 'sp' >= 1.4, coordinate reference systems use 'WKT2_2019'\nstrings, not 'PROJ' strings. 'Windows' and 'macOS' binaries (including\n'GDAL', 'PROJ' and their dependencies) are provided on 'CRAN'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rgdal_1.6-7.tar.gz" ], "version": "1.6-7" } ] }, "r-rgenoud": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rgenoud_5.9-0.10.tar.gz", "https://cloud.r-project.org/src/contrib/rgenoud_5.9-0.3.tar.gz", "https://cloud.r-project.org/src/contrib/rgenoud_5.8-3.0.tar.gz", "https://cloud.r-project.org/src/contrib/rgenoud_5.8-2.0.tar.gz", "https://cloud.r-project.org/src/contrib/rgenoud_5.8-1.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rgenoud" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-rgenoud", "patches": [], "summary": "R Version of GENetic Optimization Using Derivatives. A genetic algorithm\nplus derivative optimizer.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rgenoud_5.8-1.0.tar.gz" ], "version": "5.8-1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rgenoud_5.8-2.0.tar.gz" ], "version": "5.8-2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rgenoud_5.8-3.0.tar.gz" ], "version": "5.8-3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rgenoud_5.9-0.10.tar.gz" ], "version": "5.9-0.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rgenoud_5.9-0.3.tar.gz" ], "version": "5.9-0.3" } ] }, "r-rgeos": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "geos", "gmake", "r", "r-sp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rgeos_0.6-4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rgeos" ], "licenses": [], "maintainers": [], "name": "r-rgeos", "patches": [], "summary": "Interface to Geometry Engine - Open Source ('GEOS'). Interface to\nGeometry Engine - Open Source ('GEOS') using the C 'API' for topology\noperations on geometries. The 'GEOS' library is external to the package,\nand, when installing the package from source, must be correctly\ninstalled first. Windows and Mac Intel OS X binaries are provided on\n'CRAN'. ('rgeos' >= 0.5-1): Up to and including 'GEOS' 3.7.1,\ntopological operations succeeded with some invalid geometries for which\nthe same operations fail from and including 'GEOS' 3.7.2. The\n'checkValidity=' argument defaults and structure have been changed, from\ndefault FALSE to integer default '0L' for 'GEOS' < 3.7.2 (no check),\n'1L' 'GEOS' >= 3.7.2 (check and warn). A value of '2L' is also provided\nthat may be used, assigned globally using 'set_RGEOS_CheckValidity(2L)',\nor locally using the 'checkValidity=2L' argument, to attempt zero-width\nbuffer repair if invalid geometries are found. 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Users can build/handle graphs element-by-element or massively\nthrough data-frames, visualize the graph on a web browser through\n\"sigmajs\" (a javascript library) and interact with the igraph package.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rgexf_0.15.3.tar.gz" ], "version": "0.15.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rgexf_0.16.0.tar.gz" ], "version": "0.16.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rgexf_0.16.2.tar.gz" ], "version": "0.16.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rgexf_0.16.3.tar.gz" ], "version": "0.16.3" } ] }, "r-rgl": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "freetype", "gl", "glu", "gmake", "libpng", "libx11", "pandoc", "r", "r-base64enc", "r-crosstalk", "r-htmltools", "r-htmlwidgets", "r-jsonlite", "r-knitr", "r-magrittr", "r-manipulatewidget", "r-mime", "r-r6", "r-shiny", "zlib-api" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rgl_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/rgl_1.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/rgl_0.110.2.tar.gz", "https://cloud.r-project.org/src/contrib/rgl_0.108.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/rgl_0.108.3.tar.gz", "https://cloud.r-project.org/src/contrib/rgl_0.104.16.tar.gz", "https://cloud.r-project.org/src/contrib/rgl_0.100.26.tar.gz", "https://cloud.r-project.org/src/contrib/rgl_0.100.24.tar.gz", "https://cloud.r-project.org/src/contrib/rgl_0.100.19.tar.gz", "https://cloud.r-project.org/src/contrib/rgl_0.99.16.tar.gz", "https://cloud.r-project.org/src/contrib/rgl_0.98.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rgl" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-rgl", "patches": [], "summary": "3D Visualization Using OpenGL. Provides medium to high level functions\nfor 3D interactive graphics, including functions modelled on base\ngraphics (plot3d(), etc.) as well as functions for constructing\nrepresentations of geometric objects (cube3d(), etc.). Output may be on\nscreen using OpenGL, or to various standard 3D file formats including\nWebGL, PLY, OBJ, STL as well as 2D image formats, including PNG,\nPostscript, SVG, PGF.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rgl_0.100.19.tar.gz" ], "version": "0.100.19" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rgl_0.100.24.tar.gz" ], "version": "0.100.24" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rgl_0.100.26.tar.gz" ], "version": "0.100.26" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rgl_0.104.16.tar.gz" ], "version": "0.104.16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rgl_0.108.3.tar.gz" ], "version": "0.108.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rgl_0.108.3.2.tar.gz" ], "version": "0.108.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rgl_0.110.2.tar.gz" ], "version": "0.110.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rgl_0.98.1.tar.gz" ], "version": "0.98.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rgl_0.99.16.tar.gz" ], "version": "0.99.16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rgl_1.1.3.tar.gz" ], "version": "1.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rgl_1.3.1.tar.gz" ], "version": "1.3.1" } ] }, "r-rgooglemaps": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-png", "r-rjsonio", "r-sp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RgoogleMaps_1.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/RgoogleMaps_1.4.5.3.tar.gz", "https://cloud.r-project.org/src/contrib/RgoogleMaps_1.4.3.tar.gz", "https://cloud.r-project.org/src/contrib/RgoogleMaps_1.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/RgoogleMaps_1.2.0.7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RgoogleMaps" ], "licenses": [], "maintainers": [], "name": "r-rgooglemaps", "patches": [], "summary": "Overlays on Static Maps. This package serves two purposes: (i) Provide a\ncomfortable R interface to query the Google server for static maps, and\n(ii) Use the map as a background image to overlay plots within R. 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This package provides an interface between HDF5 and\nR. HDF5's main features are the ability to store and access very large\nand/or complex datasets and a wide variety of metadata on mass storage\n(disk) through a completely portable file format. The rhdf5 package is\nthus suited for the exchange of large and/or complex datasets between R\nand other software package, and for letting R applications work on\ndatasets that are larger than the available RAM.\n", "version": [ { "repositories": [ { "commit": "37b5165325062728bbec9167f89f5f4b794f30bc", "type": "git", "url": "https://git.bioconductor.org/packages/rhdf5" } ], "version": "2.20.0" }, { "repositories": [ { "commit": "4431bdc0a2bcbb8086ee08a0f2300129b808d1be", "type": "git", "url": "https://git.bioconductor.org/packages/rhdf5" } ], "version": "2.22.0" }, { "repositories": [ { "commit": "e926e8ce4e77082781afb943324a1e6745385b48", "type": "git", "url": "https://git.bioconductor.org/packages/rhdf5" } ], "version": "2.24.0" }, { "repositories": [ { "commit": "81e11258db493661a19cf83e142b690ecac4e6cf", "type": "git", "url": "https://git.bioconductor.org/packages/rhdf5" } ], "version": "2.26.2" }, { "repositories": [ { "commit": "e230fa34d6f3e97dd4e6065115675baf5e8213bb", "type": "git", "url": "https://git.bioconductor.org/packages/rhdf5" } ], "version": "2.28.1" }, { "repositories": [ { "commit": "ec861b81fc6962e844bf56b7549ba565a7e4c69c", "type": "git", "url": "https://git.bioconductor.org/packages/rhdf5" } ], "version": "2.34.0" }, { "repositories": [ { "commit": "f6fdfa807f5cd5a4d11d4aa6ebfaa81c118b4c3f", "type": "git", "url": "https://git.bioconductor.org/packages/rhdf5" } ], "version": "2.38.0" }, { "repositories": [ { "commit": "fb6c15a3199f3ffd746fb9a381d574d17fef45a2", "type": "git", "url": "https://git.bioconductor.org/packages/rhdf5" } ], "version": "2.40.0" }, { "repositories": [ { "commit": "fa26027d57b5b6d1c297446d9bbed74d5710c5d2", "type": "git", "url": "https://git.bioconductor.org/packages/rhdf5" } ], "version": "2.42.0" }, { "repositories": [ { "commit": "0f6e367ca9e97c37c683cd0f97c06732a67146f0", "type": "git", "url": "https://git.bioconductor.org/packages/rhdf5" } ], "version": "2.44.0" } ] }, "r-rhdf5filters": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-rhdf5lib", "zlib-api", "zstd" ], "downloads": [ "https://git.bioconductor.org/packages/rhdf5filters" ], "homepages": [ "https://bioconductor.org/packages/rhdf5filters" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "r-rhdf5filters", "patches": [], "summary": "HDF5 Compression Filters. Provides a collection of compression filters\nfor use with HDF5 datasets.\n", "version": [ { "repositories": [ { "commit": "6131538e2c5896dca0af33882bc2da961d79e49a", "type": "git", "url": "https://git.bioconductor.org/packages/rhdf5filters" } ], "version": "1.10.0" }, { "repositories": [ { "commit": "4deabdef71c0349c4eaf7e5604cb7f389809f006", "type": "git", "url": "https://git.bioconductor.org/packages/rhdf5filters" } ], "version": "1.12.0" }, { "repositories": [ { "commit": "25af0180f926b4b3ea11b30ec9277d26ad3d56b3", "type": "git", "url": "https://git.bioconductor.org/packages/rhdf5filters" } ], "version": "1.2.0" }, { "repositories": [ { "commit": "5f7f3a5b7dabd6e7d0c50cda70290e2472ff4f53", "type": "git", "url": "https://git.bioconductor.org/packages/rhdf5filters" } ], "version": "1.6.0" }, { "repositories": [ { "commit": "b0b588b71a5595b30f4e698a50b84310dc19745d", "type": "git", "url": "https://git.bioconductor.org/packages/rhdf5filters" } ], "version": "1.8.0" } ] }, "r-rhdf5lib": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "zlib-api" ], "downloads": [ "https://git.bioconductor.org/packages/Rhdf5lib" ], "homepages": [ "https://bioconductor.org/packages/Rhdf5lib" ], "licenses": [], "maintainers": [], "name": "r-rhdf5lib", "patches": [], "summary": "hdf5 library as an R package. 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'HMMER' is a profile hidden Markov\nmodel tool used primarily for sequence analysis in bioinformatics\n(). 'rhmmer' provides utilities for parsing the\n'HMMER' output into tidy data frames.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rhmmer_0.1.0.tar.gz" ], "version": "0.1.0" } ] }, "r-rhtslib": { "alias": [], "categories": [], "dependencies": [ "bzip2", "c", "curl", "gmake", "patchelf", "r", "r-zlibbioc", "xz" ], "downloads": [ "https://git.bioconductor.org/packages/Rhtslib" ], "homepages": [ "https://bioconductor.org/packages/Rhtslib" ], "licenses": [], "maintainers": [], "name": "r-rhtslib", "patches": [ "use_spack_Makeconf.patch when @1.12:1.28.0", "find_deps-1.12.patch when @1.12:1.14", "find_deps-1.16.patch when @1.16:1.28.0" ], "summary": "HTSlib high-throughput sequencing library as an R package. This package\nprovides version 1.7 of the 'HTSlib' C library for high- throughput\nsequence analysis. The package is primarily useful to developers of\nother R packages who wish to make use of HTSlib. Motivation and\ninstructions for use of this package are in the vignette,\nvignette(package=\"Rhtslib\", \"Rhtslib\").\n", "version": [ { "repositories": [ { "commit": "53dcf7dfe35d735283956c77c011a97ca3f4eb26", "type": "git", "url": "https://git.bioconductor.org/packages/Rhtslib" } ], "version": "1.10.0" }, { "repositories": [ { "commit": "e3487b1355995d09b28fde5d0a7504a3e79a7203", "type": "git", "url": "https://git.bioconductor.org/packages/Rhtslib" } ], "version": "1.12.1" }, { "repositories": [ { "commit": "4be260720f845a34d0ac838278fce1363f645230", "type": "git", "url": "https://git.bioconductor.org/packages/Rhtslib" } ], "version": "1.14.1" }, { "repositories": [ { "commit": "3ed0b5db2ee3cf0df1c6096fde8855c8485eebd4", "type": "git", "url": "https://git.bioconductor.org/packages/Rhtslib" } ], "version": "1.16.3" }, { "repositories": [ { "commit": "751a2ebaed43b7991204b27bd6c7870645001d82", "type": "git", "url": "https://git.bioconductor.org/packages/Rhtslib" } ], "version": "1.18.1" }, { "repositories": [ { "commit": "899b79faa54d42c7c9b9a2bc49972109637d367f", "type": "git", "url": "https://git.bioconductor.org/packages/Rhtslib" } ], "version": "1.22.0" }, { "repositories": [ { "commit": "f5b20e97b283942877529f750b28398782552655", "type": "git", "url": "https://git.bioconductor.org/packages/Rhtslib" } ], "version": "1.26.0" }, { "repositories": [ { "branch": "RELEASE_3_15", "type": "git", "url": "https://git.bioconductor.org/packages/Rhtslib" } ], "version": "1.28.0" }, { "repositories": [ { "commit": "3b5493473bed42958614091c58c739932ffcfa79", "type": "git", "url": "https://git.bioconductor.org/packages/Rhtslib" } ], "version": "1.8.0" }, { "repositories": [ { "commit": "1757333eb88625158505e5fa47840081110cf8a4", "type": "git", "url": "https://git.bioconductor.org/packages/Rhtslib" } ], "version": "2.0.0" }, { "repositories": [ { "commit": "2779f264713fa4bb06811a220fb00bda155d9dc1", "type": "git", "url": "https://git.bioconductor.org/packages/Rhtslib" } ], "version": "3.4.0" } ] }, "r-rinside": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RInside_0.2.18.tar.gz", "https://cloud.r-project.org/src/contrib/RInside_0.2.17.tar.gz", "https://cloud.r-project.org/src/contrib/RInside_0.2.16.tar.gz", "https://cloud.r-project.org/src/contrib/RInside_0.2.15.tar.gz", "https://cloud.r-project.org/src/contrib/RInside_0.2.14.tar.gz", "https://cloud.r-project.org/src/contrib/RInside_0.2.13.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RInside" ], "licenses": [], "maintainers": [], "name": "r-rinside", "patches": [], "summary": "C++ Classes to Embed R in C++ (and C) Applications. C++ classes to embed\nR in C++ applications The 'RInside' packages makes it easier to have \"R\ninside\" your C++ application by providing a C++ wrapperclass providing\nthe R interpreter. As R itself is embedded into your application, a\nshared library build of R is required. This works on Linux, OS X and\neven on Windows provided you use the same tools used to build R itself.\nNumerous examples are provided in the eight subdirectories of the\nexamples/ directory of the installed package: standard, mpi (for\nparallel computing) qt (showing how to embed 'RInside' inside a Qt GUI\napplication), wt (showing how to build a \"web-application\" using the Wt\ntoolkit), armadillo (for 'RInside' use with 'RcppArmadillo') and eigen\n(for 'RInside' use with 'RcppEigen'). The example use GNUmakefile(s)\nwith GNU extensions, so a GNU make is required (and will use the\nGNUmakefile automatically). Doxygen-generated documentation of the C++\nclasses is available at the 'RInside' website as well.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RInside_0.2.13.tar.gz" ], "version": "0.2.13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RInside_0.2.14.tar.gz" ], "version": "0.2.14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RInside_0.2.15.tar.gz" ], "version": "0.2.15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RInside_0.2.16.tar.gz" ], "version": "0.2.16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RInside_0.2.17.tar.gz" ], "version": "0.2.17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RInside_0.2.18.tar.gz" ], "version": "0.2.18" } ] }, "r-rio": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-curl", "r-data-table", "r-foreign", "r-haven", "r-lifecycle", "r-openxlsx", "r-r-utils", "r-readr", "r-readxl", "r-tibble", "r-writexl" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rio_1.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/rio_0.5.29.tar.gz", "https://cloud.r-project.org/src/contrib/rio_0.5.16.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rio" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-rio", "patches": [], "summary": "A Swiss-Army Knife for Data I/O. Streamlined data import and export by\nmaking assumptions that the user is probably willing to make: 'import()'\nand 'export()' determine the data structure from the file extension,\nreasonable defaults are used for data import and export (e.g.,\n'stringsAsFactors=FALSE'), web-based import is natively supported\n(including from SSL/HTTPS), compressed files can be read directly\nwithout explicit decompression, and fast import packages are used where\nappropriate. An additional convenience function, 'convert()', provides a\nsimple method for converting between file types.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rio_0.5.16.tar.gz" ], "version": "0.5.16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rio_0.5.29.tar.gz" ], "version": "0.5.29" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rio_1.2.2.tar.gz" ], "version": "1.2.2" } ] }, "r-rjags": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "jags", "r", "r-coda" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rjags_4-16.tar.gz", "https://cloud.r-project.org/src/contrib/rjags_4-14.tar.gz", "https://cloud.r-project.org/src/contrib/rjags_4-13.tar.gz", "https://cloud.r-project.org/src/contrib/rjags_4-12.tar.gz", "https://cloud.r-project.org/src/contrib/rjags_4-10.tar.gz", "https://cloud.r-project.org/src/contrib/rjags_4-8.tar.gz", "https://cloud.r-project.org/src/contrib/rjags_4-6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rjags" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-rjags", "patches": [], "summary": "Bayesian Graphical Models using MCMC. Interface to the JAGS MCMC\nlibrary.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rjags_4-10.tar.gz" ], "version": "4-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rjags_4-12.tar.gz" ], "version": "4-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rjags_4-13.tar.gz" ], "version": "4-13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rjags_4-14.tar.gz" ], "version": "4-14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rjags_4-16.tar.gz" ], "version": "4-16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rjags_4-6.tar.gz" ], "version": "4-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rjags_4-8.tar.gz" ], "version": "4-8" } ] }, "r-rjava": { "alias": [], "categories": [], "dependencies": [ "bzip2", "c", "gmake", "iconv", "icu4c", "java", "pcre2", "r", "xz", "zlib-api" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rJava_1.0-11.tar.gz", "https://cloud.r-project.org/src/contrib/rJava_1.0-6.tar.gz", "https://cloud.r-project.org/src/contrib/rJava_0.9-13.tar.gz", "https://cloud.r-project.org/src/contrib/rJava_0.9-11.tar.gz", "https://cloud.r-project.org/src/contrib/rJava_0.9-8.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rJava" ], "licenses": [], "maintainers": [], "name": "r-rjava", "patches": [], "summary": "Low-Level R to Java Interface. Low-level interface to Java VM very much\nlike .C/.Call and friends. Allows creation of objects, calling methods\nand accessing fields.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rJava_0.9-11.tar.gz" ], "version": "0.9-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rJava_0.9-13.tar.gz" ], "version": "0.9-13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rJava_0.9-8.tar.gz" ], "version": "0.9-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rJava_1.0-11.tar.gz" ], "version": "1.0-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rJava_1.0-6.tar.gz" ], "version": "1.0-6" } ] }, "r-rjson": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rjson_0.2.22.tar.gz", "https://cloud.r-project.org/src/contrib/rjson_0.2.21.tar.gz", "https://cloud.r-project.org/src/contrib/rjson_0.2.20.tar.gz", "https://cloud.r-project.org/src/contrib/rjson_0.2.19.tar.gz", "https://cloud.r-project.org/src/contrib/rjson_0.2.15.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rjson" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-rjson", "patches": [], "summary": "JSON for R. Converts R object into JSON objects and vice-versa.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rjson_0.2.15.tar.gz" ], "version": "0.2.15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rjson_0.2.19.tar.gz" ], "version": "0.2.19" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rjson_0.2.20.tar.gz" ], "version": "0.2.20" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rjson_0.2.21.tar.gz" ], "version": "0.2.21" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rjson_0.2.22.tar.gz" ], "version": "0.2.22" } ] }, "r-rjsonio": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RJSONIO_1.3-1.9.tar.gz", "https://cloud.r-project.org/src/contrib/RJSONIO_1.3-1.8.tar.gz", "https://cloud.r-project.org/src/contrib/RJSONIO_1.3-1.6.tar.gz", "https://cloud.r-project.org/src/contrib/RJSONIO_1.3-1.4.tar.gz", "https://cloud.r-project.org/src/contrib/RJSONIO_1.3-1.2.tar.gz", "https://cloud.r-project.org/src/contrib/RJSONIO_1.3-1.1.tar.gz", "https://cloud.r-project.org/src/contrib/RJSONIO_1.3-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RJSONIO" ], "licenses": [], "maintainers": [], "name": "r-rjsonio", "patches": [], "summary": "Serialize R Objects to JSON, JavaScript Object Notation. This is a\npackage that allows conversion to and from data in Javascript object\nnotation (JSON) format. This allows R objects to be inserted into\nJavascript/ECMAScript/ActionScript code and allows R programmers to read\nand convert JSON content to R objects. This is an alternative to rjson\npackage. Originally, that was too slow for converting large R objects to\nJSON and was not extensible. rjson's performance is now similar to this\npackage, and perhaps slightly faster in some cases. This package uses\nmethods and is readily extensible by defining methods for different\nclasses, vectorized operations, and C code and callbacks to R functions\nfor deserializing JSON objects to R. The two packages intentionally\nshare the same basic interface. This package (RJSONIO) has many\nadditional options to allow customizing the generation and processing of\nJSON content. This package uses libjson rather than implementing yet\nanother JSON parser. The aim is to support other general projects by\nbuilding on their work, providing feedback and benefit from their\nongoing development.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RJSONIO_1.3-0.tar.gz" ], "version": "1.3-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RJSONIO_1.3-1.1.tar.gz" ], "version": "1.3-1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RJSONIO_1.3-1.2.tar.gz" ], "version": "1.3-1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RJSONIO_1.3-1.4.tar.gz" ], "version": "1.3-1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RJSONIO_1.3-1.6.tar.gz" ], "version": "1.3-1.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RJSONIO_1.3-1.8.tar.gz" ], "version": "1.3-1.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RJSONIO_1.3-1.9.tar.gz" ], "version": "1.3-1.9" } ] }, "r-rlang": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rlang_1.1.4.tar.gz", "https://cloud.r-project.org/src/contrib/rlang_1.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/rlang_1.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/rlang_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/rlang_1.0.6.tar.gz", "https://cloud.r-project.org/src/contrib/rlang_1.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/rlang_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/rlang_1.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/rlang_0.4.12.tar.gz", "https://cloud.r-project.org/src/contrib/rlang_0.4.10.tar.gz", "https://cloud.r-project.org/src/contrib/rlang_0.4.6.tar.gz", "https://cloud.r-project.org/src/contrib/rlang_0.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/rlang_0.3.4.tar.gz", "https://cloud.r-project.org/src/contrib/rlang_0.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/rlang_0.3.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/rlang_0.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/rlang_0.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/rlang_0.1.4.tar.gz", "https://cloud.r-project.org/src/contrib/rlang_0.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/rlang_0.1.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rlang" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-rlang", "patches": [], "summary": "Functions for Base Types and Core R and 'Tidyverse' Features. A toolbox\nfor working with base types, core R features like the condition system,\nand core 'Tidyverse' features like tidy evaluation.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rlang_0.1.1.tar.gz" ], "version": "0.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rlang_0.1.2.tar.gz" ], "version": "0.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rlang_0.1.4.tar.gz" ], "version": "0.1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rlang_0.2.2.tar.gz" ], "version": "0.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rlang_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rlang_0.3.0.1.tar.gz" ], "version": "0.3.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rlang_0.3.1.tar.gz" ], "version": "0.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rlang_0.3.4.tar.gz" ], "version": "0.3.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rlang_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rlang_0.4.10.tar.gz" ], "version": "0.4.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rlang_0.4.12.tar.gz" ], "version": "0.4.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rlang_0.4.6.tar.gz" ], "version": "0.4.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rlang_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rlang_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rlang_1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rlang_1.0.6.tar.gz" ], "version": "1.0.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rlang_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rlang_1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rlang_1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rlang_1.1.4.tar.gz" ], "version": "1.1.4" } ] }, "r-rlas": { "alias": [], "categories": [], "dependencies": [ "boost", "cxx", "gmake", "parallel", "r", "r-data-table", "r-r-utils", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rlas_1.8.0.tar.gz", "https://cloud.r-project.org/src/contrib/rlas_1.7.0.tar.gz", null ], "homepages": [ "https://cran.r-project.org" ], "licenses": [ "LGPL-3.0-only" ], "maintainers": [ "sidpbury" ], "name": "r-rlas", "patches": [], "summary": "R package to read and write las and laz files used to store LiDAR data\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rlas_1.7.0.tar.gz" ], "version": "1.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rlas_1.8.0.tar.gz" ], "version": "1.8.0" } ] }, "r-rle": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rle_0.9.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rle" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-rle", "patches": [], "summary": "Common Functions for Run-Length Encoded Vectors. Common 'base' and\n'stats' methods for 'rle' objects, aiming to make it possible to treat\nthem transparently as vectors.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rle_0.9.2.tar.gz" ], "version": "0.9.2" } ] }, "r-rlist": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-data-table", "r-jsonlite", "r-xml", "r-yaml" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rlist_0.4.6.2.tar.gz", null ], "homepages": [ "https://renkun-ken.github.io/rlist/" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-rlist", "patches": [], "summary": "Provides a set of functions for data manipulation with list objects,\nincluding mapping, filtering, grouping, sorting, updating, searching,\nand other useful functions. Most functions are designed to be pipeline\nfriendly so that data processing with lists can be chained.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rlist_0.4.6.2.tar.gz" ], "version": "0.4.6.2" } ] }, "r-rmariadb": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "mariadb-client", "r", "r-bh", "r-bit64", "r-blob", "r-cpp11", "r-dbi", "r-hms", "r-lubridate", "r-plogr", "r-rcpp", "r-rlang" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RMariaDB_1.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/RMariaDB_1.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/RMariaDB_1.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/RMariaDB_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/RMariaDB_1.0.8.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RMariaDB" ], "licenses": [], "maintainers": [], "name": "r-rmariadb", "patches": [], "summary": "Database Interface and 'MariaDB' Driver. Implements a 'DBI'-compliant\ninterface to 'MariaDB' () and 'MySQL'\n() databases.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RMariaDB_1.0.8.tar.gz" ], "version": "1.0.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RMariaDB_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RMariaDB_1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RMariaDB_1.2.2.tar.gz" ], "version": "1.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RMariaDB_1.3.2.tar.gz" ], "version": "1.3.2" } ] }, "r-rmarkdown": { "alias": [], "categories": [], "dependencies": [ "gmake", "pandoc", "r", "r-base64enc", "r-bslib", "r-catools", "r-evaluate", "r-fontawesome", "r-htmltools", "r-jquerylib", "r-jsonlite", "r-knitr", "r-mime", "r-rprojroot", "r-stringr", "r-tinytex", "r-xfun", "r-yaml" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rmarkdown_2.28.tar.gz", "https://cloud.r-project.org/src/contrib/rmarkdown_2.21.tar.gz", "https://cloud.r-project.org/src/contrib/rmarkdown_2.17.tar.gz", "https://cloud.r-project.org/src/contrib/rmarkdown_2.16.tar.gz", "https://cloud.r-project.org/src/contrib/rmarkdown_2.14.tar.gz", "https://cloud.r-project.org/src/contrib/rmarkdown_2.11.tar.gz", "https://cloud.r-project.org/src/contrib/rmarkdown_2.9.tar.gz", "https://cloud.r-project.org/src/contrib/rmarkdown_2.6.tar.gz", "https://cloud.r-project.org/src/contrib/rmarkdown_1.14.tar.gz", "https://cloud.r-project.org/src/contrib/rmarkdown_1.13.tar.gz", "https://cloud.r-project.org/src/contrib/rmarkdown_1.7.tar.gz", "https://cloud.r-project.org/src/contrib/rmarkdown_1.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rmarkdown" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-rmarkdown", "patches": [], "summary": "Dynamic Documents for R. Convert R Markdown documents into a variety of\nformats.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rmarkdown_1.0.tar.gz" ], "version": "1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rmarkdown_1.13.tar.gz" ], "version": "1.13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rmarkdown_1.14.tar.gz" ], "version": "1.14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rmarkdown_1.7.tar.gz" ], "version": "1.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rmarkdown_2.11.tar.gz" ], "version": "2.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rmarkdown_2.14.tar.gz" ], "version": "2.14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rmarkdown_2.16.tar.gz" ], "version": "2.16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rmarkdown_2.17.tar.gz" ], "version": "2.17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rmarkdown_2.21.tar.gz" ], "version": "2.21" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rmarkdown_2.28.tar.gz" ], "version": "2.28" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rmarkdown_2.6.tar.gz" ], "version": "2.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rmarkdown_2.9.tar.gz" ], "version": "2.9" } ] }, "r-rminer": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-adabag", "r-cubist", "r-e1071", "r-glmnet", "r-kernlab", "r-kknn", "r-lattice", "r-mass", "r-mda", "r-nnet", "r-party", "r-plotrix", "r-pls", "r-randomforest", "r-rpart", "r-xgboost" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rminer_1.4.6.tar.gz", "https://cloud.r-project.org/src/contrib/rminer_1.4.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rminer" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-rminer", "patches": [], "summary": "Data Mining Classification and Regression Methods. Facilitates the use\nof data mining algorithms in classification and regression (including\ntime series forecasting) tasks by presenting a short and coherent set of\nfunctions. Versions: 1.4.6 / 1.4.5 / 1.4.4 new automated machine\nlearning (AutoML) and ensembles, via improved fit(), mining() and\nmparheuristic() functions, and new categorical preprocessing, via\nimproved delevels() function; 1.4.3 new metrics (e.g., macro precision,\nexplained variance), new \"lssvm\" model and improved mparheuristic()\nfunction; 1.4.2 new \"NMAE\" metric, \"xgboost\" and \"cv.glmnet\" models (16\nclassification and 18 regression models); 1.4.1 new tutorial and more\nrobust version; 1.4 - new classification and regression models, with a\ntotal of 14 classification and 15 regression methods, including:\nDecision Trees, Neural Networks, Support Vector Machines, Random\nForests, Bagging and Boosting; 1.3 and 1.3.1 - new classification and\nregression metrics; 1.2 - new input importance methods via improved\nImportance() function; 1.0 - first version.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rminer_1.4.2.tar.gz" ], "version": "1.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rminer_1.4.6.tar.gz" ], "version": "1.4.6" } ] }, "r-rmpfr": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gmp", "mpfr", "r", "r-gmp", "texlive" ], "downloads": [ "https://cloud.r-project.org/src/contrib/Rmpfr_0.9-5.tar.gz", "https://cloud.r-project.org/src/contrib/Rmpfr_0.9-2.tar.gz", "https://cloud.r-project.org/src/contrib/Rmpfr_0.8-9.tar.gz", "https://cloud.r-project.org/src/contrib/Rmpfr_0.8-7.tar.gz", "https://cloud.r-project.org/src/contrib/Rmpfr_0.8-2.tar.gz", "https://cloud.r-project.org/src/contrib/Rmpfr_0.7-2.tar.gz", "https://cloud.r-project.org/src/contrib/Rmpfr_0.7-1.tar.gz", "https://cloud.r-project.org/src/contrib/Rmpfr_0.6-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=Rmpfr" ], "licenses": [], "maintainers": [], "name": "r-rmpfr", "patches": [], "summary": "R MPFR - Multiple Precision Floating-Point Reliable. Arithmetic (via S4\nclasses and methods) for arbitrary precision floating point numbers,\nincluding transcendental (\"special\") functions. To this end, Rmpfr\ninterfaces to the LGPL'ed MPFR (Multiple Precision Floating-Point\nReliable) Library which itself is based on the GMP (GNU Multiple\nPrecision) Library.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/Rmpfr_0.6-1.tar.gz" ], "version": "0.6-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rmpfr_0.7-1.tar.gz" ], "version": "0.7-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rmpfr_0.7-2.tar.gz" ], "version": "0.7-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rmpfr_0.8-2.tar.gz" ], "version": "0.8-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rmpfr_0.8-7.tar.gz" ], "version": "0.8-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rmpfr_0.8-9.tar.gz" ], "version": "0.8-9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rmpfr_0.9-2.tar.gz" ], "version": "0.9-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rmpfr_0.9-5.tar.gz" ], "version": "0.9-5" } ] }, "r-rmpi": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "mpi", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/Rmpi_0.7-2.tar.gz", "https://cloud.r-project.org/src/contrib/Rmpi_0.7-1.tar.gz", "https://cloud.r-project.org/src/contrib/Rmpi_0.6-9.2.tar.gz", "https://cloud.r-project.org/src/contrib/Rmpi_0.6-9.tar.gz", "https://cloud.r-project.org/src/contrib/Rmpi_0.6-8.tar.gz", "https://cloud.r-project.org/src/contrib/Rmpi_0.6-6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=Rmpi" ], "licenses": [], "maintainers": [], "name": "r-rmpi", "patches": [], "summary": "Interface (Wrapper) to MPI (Message-Passing Interface). An interface\n(wrapper) to MPI APIs. It also provides interactive R manager and worker\nenvironment.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/Rmpi_0.6-6.tar.gz" ], "version": "0.6-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rmpi_0.6-8.tar.gz" ], "version": "0.6-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rmpi_0.6-9.tar.gz" ], "version": "0.6-9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rmpi_0.6-9.2.tar.gz" ], "version": "0.6-9.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rmpi_0.7-1.tar.gz" ], "version": "0.7-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rmpi_0.7-2.tar.gz" ], "version": "0.7-2" } ] }, "r-rms": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-cluster", "r-colorspace", "r-digest", "r-ggplot2", "r-hmisc", "r-htmltable", "r-htmltools", "r-kableextra", "r-knitr", "r-lattice", "r-mass", "r-multcomp", "r-nlme", "r-polspline", "r-quantreg", "r-rpart", "r-sparsem", "r-survival" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rms_6.8-1.tar.gz", "https://cloud.r-project.org/src/contrib/rms_6.6-0.tar.gz", "https://cloud.r-project.org/src/contrib/rms_6.3-0.tar.gz", "https://cloud.r-project.org/src/contrib/rms_6.2-0.tar.gz", "https://cloud.r-project.org/src/contrib/rms_6.1-0.tar.gz", "https://cloud.r-project.org/src/contrib/rms_5.1-4.tar.gz", "https://cloud.r-project.org/src/contrib/rms_5.1-3.1.tar.gz", "https://cloud.r-project.org/src/contrib/rms_5.1-3.tar.gz", "https://cloud.r-project.org/src/contrib/rms_5.1-2.tar.gz", "https://cloud.r-project.org/src/contrib/rms_5.1-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rms" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-rms", "patches": [], "summary": "Regression Modeling Strategies. Regression modeling, testing,\nestimation, validation, graphics, prediction, and typesetting by storing\nenhanced model design attributes in the fit. 'rms' is a collection of\nfunctions that assist with and streamline modeling. It also contains\nfunctions for binary and ordinal logistic regression models, ordinal\nmodels for continuous Y with a variety of distribution families, and the\nBuckley-James multiple regression model for right-censored responses,\nand implements penalized maximum likelihood estimation for logistic and\nordinary linear models. 'rms' works with almost any regression model,\nbut it was especially written to work with binary or ordinal regression\nmodels, Cox regression, accelerated failure time models, ordinary linear\nmodels, the Buckley-James model, generalized least squares for serially\nor spatially correlated observations, generalized linear models, and\nquantile regression.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rms_5.1-1.tar.gz" ], "version": "5.1-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rms_5.1-2.tar.gz" ], "version": "5.1-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rms_5.1-3.tar.gz" ], "version": "5.1-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rms_5.1-3.1.tar.gz" ], "version": "5.1-3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rms_5.1-4.tar.gz" ], "version": "5.1-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rms_6.1-0.tar.gz" ], "version": "6.1-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rms_6.2-0.tar.gz" ], "version": "6.2-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rms_6.3-0.tar.gz" ], "version": "6.3-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rms_6.6-0.tar.gz" ], "version": "6.6-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rms_6.8-1.tar.gz" ], "version": "6.8-1" } ] }, "r-rmutil": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rmutil_1.1.10.tar.gz", "https://cloud.r-project.org/src/contrib/rmutil_1.1.9.tar.gz", "https://cloud.r-project.org/src/contrib/rmutil_1.1.5.tar.gz", "https://cloud.r-project.org/src/contrib/rmutil_1.1.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rmutil" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-rmutil", "patches": [], "summary": "Utilities for Nonlinear Regression and Repeated MeasurementsModels. A\ntoolkit of functions for nonlinear regression and repeated measurements\nnot to be used by itself but called by other Lindsey packages such as\n'gnlm', 'stable', 'growth', 'repeated', and 'event' (available at\n).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rmutil_1.1.10.tar.gz" ], "version": "1.1.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rmutil_1.1.3.tar.gz" ], "version": "1.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rmutil_1.1.5.tar.gz" ], "version": "1.1.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rmutil_1.1.9.tar.gz" ], "version": "1.1.9" } ] }, "r-rmysql": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "mariadb-client", "r", "r-dbi" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RMySQL_0.10.27.tar.gz", "https://cloud.r-project.org/src/contrib/RMySQL_0.10.25.tar.gz", "https://cloud.r-project.org/src/contrib/RMySQL_0.10.24.tar.gz", "https://cloud.r-project.org/src/contrib/RMySQL_0.10.23.tar.gz", "https://cloud.r-project.org/src/contrib/RMySQL_0.10.21.tar.gz", "https://cloud.r-project.org/src/contrib/RMySQL_0.10.17.tar.gz", "https://cloud.r-project.org/src/contrib/RMySQL_0.10.9.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RMySQL" ], "licenses": [], "maintainers": [], "name": "r-rmysql", "patches": [], "summary": "Database Interface and 'MySQL' Driver for R. Legacy 'DBI' interface to\n'MySQL' / 'MariaDB' based on old code ported from S-PLUS. A modern\n'MySQL' client based on 'Rcpp' is available from the 'RMariaDB' package.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RMySQL_0.10.17.tar.gz" ], "version": "0.10.17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RMySQL_0.10.21.tar.gz" ], "version": "0.10.21" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RMySQL_0.10.23.tar.gz" ], "version": "0.10.23" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RMySQL_0.10.24.tar.gz" ], "version": "0.10.24" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RMySQL_0.10.25.tar.gz" ], "version": "0.10.25" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RMySQL_0.10.27.tar.gz" ], "version": "0.10.27" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RMySQL_0.10.9.tar.gz" ], "version": "0.10.9" } ] }, "r-rnaseqmap": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-biobase", "r-dbi", "r-deseq", "r-edger", "r-genomicalignments", "r-genomicranges", "r-iranges", "r-rsamtools" ], "downloads": [ "https://git.bioconductor.org/packages/rnaSeqMap" ], "homepages": [ "https://bioconductor.org/packages/rnaSeqMap" ], "licenses": [], "maintainers": [], "name": "r-rnaseqmap", "patches": [], "summary": "rnaSeq secondary analyses. The rnaSeqMap library provides classes and\nfunctions to analyze the RNA- sequencing data using the coverage\nprofiles in multiple samples at a time\n", "version": [ { "repositories": [ { "commit": "7881bc00600ed824ac437edf3cfba35573261e46", "type": "git", "url": "https://git.bioconductor.org/packages/rnaSeqMap" } ], "version": "2.34.0" }, { "repositories": [ { "commit": "69c46fa467be0ac30776ede85a521f7622539b7e", "type": "git", "url": "https://git.bioconductor.org/packages/rnaSeqMap" } ], "version": "2.36.0" }, { "repositories": [ { "commit": "5eb9583bfacd375161739a8ae6057204487f8b9e", "type": "git", "url": "https://git.bioconductor.org/packages/rnaSeqMap" } ], "version": "2.38.0" }, { "repositories": [ { "commit": "c122d645b3503fb1a061f5515e4f8cf2863b3ba3", "type": "git", "url": "https://git.bioconductor.org/packages/rnaSeqMap" } ], "version": "2.40.1" }, { "repositories": [ { "commit": "3a3a1030cc38d79d04536e0ab16114e4fa6721cf", "type": "git", "url": "https://git.bioconductor.org/packages/rnaSeqMap" } ], "version": "2.42.0" }, { "repositories": [ { "commit": "a8c515e518cebf571d1524c3a8a986ba7d1557db", "type": "git", "url": "https://git.bioconductor.org/packages/rnaSeqMap" } ], "version": "2.48.0" } ] }, "r-rncl": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-progress", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rncl_0.8.7.tar.gz", "https://cloud.r-project.org/src/contrib/rncl_0.8.6.tar.gz", "https://cloud.r-project.org/src/contrib/rncl_0.8.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rncl" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "r-rncl", "patches": [], "summary": "An Interface to the Nexus Class Library. An interface to the Nexus Class\nLibrary which allows parsing of NEXUS, Newick and other phylogenetic\ntree file formats. It provides elements of the file that can be used to\nbuild phylogenetic objects such as ape's 'phylo' or phylobase's\n'phylo4(d)'. This functionality is demonstrated with\n'read_newick_phylo()' and 'read_nexus_phylo()'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rncl_0.8.4.tar.gz" ], "version": "0.8.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rncl_0.8.6.tar.gz" ], "version": "0.8.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rncl_0.8.7.tar.gz" ], "version": "0.8.7" } ] }, "r-rnexml": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ape", "r-dplyr", "r-httr", "r-lazyeval", "r-plyr", "r-reshape2", "r-rlang", "r-stringi", "r-stringr", "r-tidyr", "r-uuid", "r-xml", "r-xml2" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RNeXML_2.4.11.tar.gz", "https://cloud.r-project.org/src/contrib/RNeXML_2.4.8.tar.gz", "https://cloud.r-project.org/src/contrib/RNeXML_2.4.7.tar.gz", "https://cloud.r-project.org/src/contrib/RNeXML_2.4.5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RNeXML" ], "licenses": [], "maintainers": [], "name": "r-rnexml", "patches": [], "summary": "Semantically Rich I/O for the 'NeXML' Format. Provides access to\nphyloinformatic data in 'NeXML' format. The package should add new\nfunctionality to R such as the possibility to manipulate 'NeXML' objects\nin more various and refined way and compatibility with 'ape' objects.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RNeXML_2.4.11.tar.gz" ], "version": "2.4.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RNeXML_2.4.5.tar.gz" ], "version": "2.4.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RNeXML_2.4.7.tar.gz" ], "version": "2.4.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RNeXML_2.4.8.tar.gz" ], "version": "2.4.8" } ] }, "r-rngtools": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-digest", "r-pkgmaker", "r-stringr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rngtools_1.5.2.tar.gz", "https://cloud.r-project.org/src/contrib/rngtools_1.5.tar.gz", "https://cloud.r-project.org/src/contrib/rngtools_1.4.tar.gz", "https://cloud.r-project.org/src/contrib/rngtools_1.3.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/rngtools_1.3.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rngtools" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-rngtools", "patches": [], "summary": "Utility Functions for Working with Random Number Generators. Provides a\nset of functions for working with Random Number Generators (RNGs). In\nparticular, a generic S4 framework is defined for getting/setting the\ncurrent RNG, or RNG data that are embedded into objects for\nreproducibility. Notably, convenient default methods greatly facilitate\nthe way current RNG settings can be changed.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rngtools_1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rngtools_1.3.1.1.tar.gz" ], "version": "1.3.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rngtools_1.4.tar.gz" ], "version": "1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rngtools_1.5.tar.gz" ], "version": "1.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rngtools_1.5.2.tar.gz" ], "version": "1.5.2" } ] }, "r-rnoaa": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-crul", "r-data-table", "r-dplyr", "r-geonames", "r-ggplot2", "r-gridextra", "r-hoardr", "r-isdparser", "r-jsonlite", "r-lubridate", "r-rappdirs", "r-scales", "r-tibble", "r-tidyr", "r-tidyselect", "r-xml", "r-xml2" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rnoaa_1.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/rnoaa_1.3.8.tar.gz", "https://cloud.r-project.org/src/contrib/rnoaa_1.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/rnoaa_0.8.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rnoaa" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-rnoaa", "patches": [], "summary": "'NOAA' Weather Data from R. Client for many 'NOAA' data sources\nincluding the 'NCDC' climate 'API' at , with functions for each of the 'API' 'endpoints':\ndata, data categories, data sets, data types, locations, location\ncategories, and stations. In addition, we have an interface for 'NOAA'\nsea ice data, the 'NOAA' severe weather inventory, 'NOAA' Historical\nObserving 'Metadata' Repository ('HOMR') data, 'NOAA' storm data via\n'IBTrACS', tornado data via the 'NOAA' storm prediction center, and\nmore.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rnoaa_0.8.4.tar.gz" ], "version": "0.8.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rnoaa_1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rnoaa_1.3.8.tar.gz" ], "version": "1.3.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rnoaa_1.4.0.tar.gz" ], "version": "1.4.0" } ] }, "r-robust": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-fit-models", "r-lattice", "r-mass", "r-robustbase", "r-rrcov" ], "downloads": [ "https://cloud.r-project.org/src/contrib/robust_0.7-5.tar.gz", "https://cloud.r-project.org/src/contrib/robust_0.7-1.tar.gz", "https://cloud.r-project.org/src/contrib/robust_0.7-0.tar.gz", "https://cloud.r-project.org/src/contrib/robust_0.6-1.tar.gz", "https://cloud.r-project.org/src/contrib/robust_0.5-0.0.tar.gz", "https://cloud.r-project.org/src/contrib/robust_0.4-18.1.tar.gz", "https://cloud.r-project.org/src/contrib/robust_0.4-18.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=robust" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-robust", "patches": [], "summary": "Port of the S+ Robust Library. Methods for robust statistics, a state of\nthe art in the early 2000s, notably for robust regression and robust\nmultivariate analysis.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/robust_0.4-18.tar.gz" ], "version": "0.4-18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/robust_0.4-18.1.tar.gz" ], "version": "0.4-18.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/robust_0.5-0.0.tar.gz" ], "version": "0.5-0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/robust_0.6-1.tar.gz" ], "version": "0.6-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/robust_0.7-0.tar.gz" ], "version": "0.7-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/robust_0.7-1.tar.gz" ], "version": "0.7-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/robust_0.7-5.tar.gz" ], "version": "0.7-5" } ] }, "r-robustbase": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-deoptimr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/robustbase_0.99-4.tar.gz", "https://cloud.r-project.org/src/contrib/robustbase_0.95-1.tar.gz", "https://cloud.r-project.org/src/contrib/robustbase_0.95-0.tar.gz", "https://cloud.r-project.org/src/contrib/robustbase_0.93-9.tar.gz", "https://cloud.r-project.org/src/contrib/robustbase_0.93-7.tar.gz", "https://cloud.r-project.org/src/contrib/robustbase_0.93-5.tar.gz", "https://cloud.r-project.org/src/contrib/robustbase_0.93-4.tar.gz", "https://cloud.r-project.org/src/contrib/robustbase_0.92-7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=robustbase" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-robustbase", "patches": [], "summary": "Basic Robust Statistics. \"Essential\" Robust Statistics. Tools allowing\nto analyze data with robust methods. This includes regression\nmethodology including model selections and multivariate statistics where\nwe strive to cover the book \"Robust Statistics, Theory and Methods\" by\n'Maronna, Martin and Yohai'; Wiley 2006.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/robustbase_0.92-7.tar.gz" ], "version": "0.92-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/robustbase_0.93-4.tar.gz" ], "version": "0.93-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/robustbase_0.93-5.tar.gz" ], "version": "0.93-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/robustbase_0.93-7.tar.gz" ], "version": "0.93-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/robustbase_0.93-9.tar.gz" ], "version": "0.93-9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/robustbase_0.95-0.tar.gz" ], "version": "0.95-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/robustbase_0.95-1.tar.gz" ], "version": "0.95-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/robustbase_0.99-4.tar.gz" ], "version": "0.99-4" } ] }, "r-roc": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-knitr" ], "downloads": [ "https://git.bioconductor.org/packages/ROC" ], "homepages": [ "https://bioconductor.org/packages/ROC" ], "licenses": [], "maintainers": [], "name": "r-roc", "patches": [], "summary": "utilities for ROC, with microarray focus. Provide utilities for ROC,\nwith microarray focus.\n", "version": [ { "repositories": [ { "commit": "60250fdb091f6a938709b8a2cffe6442ee22a9a2", "type": "git", "url": "https://git.bioconductor.org/packages/ROC" } ], "version": "1.62.0" }, { "repositories": [ { "commit": "62701ee41f48f99d15344127384fa032db69486f", "type": "git", "url": "https://git.bioconductor.org/packages/ROC" } ], "version": "1.66.0" }, { "repositories": [ { "commit": "44fd639958b9b1be4f8f731dc2be9dd91b2fa632", "type": "git", "url": "https://git.bioconductor.org/packages/ROC" } ], "version": "1.70.0" }, { "repositories": [ { "commit": "c5d083b01314280dd43eb4cddd8a7fde8b5dce18", "type": "git", "url": "https://git.bioconductor.org/packages/ROC" } ], "version": "1.72.0" }, { "repositories": [ { "commit": "982ad4d3606b19b8460e8a8af7cfe7c30b83f9b9", "type": "git", "url": "https://git.bioconductor.org/packages/ROC" } ], "version": "1.74.0" }, { "repositories": [ { "commit": "905ee01be734ed0a5674a4ce2cdc0cdea9d01cb9", "type": "git", "url": "https://git.bioconductor.org/packages/ROC" } ], "version": "1.76.0" } ] }, "r-rocr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-gplots" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ROCR_1.0-11.tar.gz", "https://cloud.r-project.org/src/contrib/ROCR_1.0-7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ROCR" ], "licenses": [], "maintainers": [], "name": "r-rocr", "patches": [], "summary": "Visualizing the Performance of Scoring Classifiers. ROC graphs,\nsensitivity/specificity curves, lift charts, and precision/recall plots\nare popular examples of trade-off visualizations for specific pairs of\nperformance measures. ROCR is a flexible tool for creating cutoff-\nparameterized 2D performance curves by freely combining two from over 25\nperformance measures (new performance measures can be added using a\nstandard interface). Curves from different cross-validation or\nbootstrapping runs can be averaged by different methods, and standard\ndeviations, standard errors or box plots can be used to visualize the\nvariability across the runs. The parameterization can be visualized by\nprinting cutoff values at the corresponding curve positions, or by\ncoloring the curve according to cutoff. All components of a performance\nplot can be quickly adjusted using a flexible parameter dispatching\nmechanism. Despite its flexibility, ROCR is easy to use, with only three\ncommands and reasonable default values for all optional parameters.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ROCR_1.0-11.tar.gz" ], "version": "1.0-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/ROCR_1.0-7.tar.gz" ], "version": "1.0-7" } ] }, "r-rodbc": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "unixodbc" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RODBC_1.3-23.tar.gz", "https://cloud.r-project.org/src/contrib/RODBC_1.3-20.tar.gz", "https://cloud.r-project.org/src/contrib/RODBC_1.3-19.tar.gz", "https://cloud.r-project.org/src/contrib/RODBC_1.3-17.tar.gz", "https://cloud.r-project.org/src/contrib/RODBC_1.3-15.tar.gz", "https://cloud.r-project.org/src/contrib/RODBC_1.3-13.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RODBC" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-rodbc", "patches": [], "summary": "ODBC Database Access. An ODBC database interface.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RODBC_1.3-13.tar.gz" ], "version": "1.3-13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RODBC_1.3-15.tar.gz" ], "version": "1.3-15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RODBC_1.3-17.tar.gz" ], "version": "1.3-17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RODBC_1.3-19.tar.gz" ], "version": "1.3-19" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RODBC_1.3-20.tar.gz" ], "version": "1.3-20" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RODBC_1.3-23.tar.gz" ], "version": "1.3-23" } ] }, "r-rook": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-brew" ], "downloads": [ "https://cloud.r-project.org/src/contrib/Rook_1.2.tar.gz", "https://cloud.r-project.org/src/contrib/Rook_1.1-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=Rook" ], "licenses": [], "maintainers": [], "name": "r-rook", "patches": [], "summary": "Rook - a web server interface for R. This package contains the Rook\nspecification and convenience software for building and running Rook\napplications. To get started, be sure and read the 'Rook' help file\nfirst.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/Rook_1.1-1.tar.gz" ], "version": "1.1-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rook_1.2.tar.gz" ], "version": "1.2" } ] }, "r-rots": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-biobase", "r-rcpp" ], "downloads": [ "https://git.bioconductor.org/packages/ROTS" ], "homepages": [ "https://bioconductor.org/packages/ROTS" ], "licenses": [], "maintainers": [], "name": "r-rots", "patches": [], "summary": "Reproducibility-Optimized Test Statistic. Calculates the\nReproducibility-Optimized Test Statistic (ROTS) for differential testing\nin omics data.\n", "version": [ { "repositories": [ { "commit": "1733d3f868cef4d81af6edfc102221d80793937b", "type": "git", "url": "https://git.bioconductor.org/packages/ROTS" } ], "version": "1.10.1" }, { "repositories": [ { "commit": "7e2c96fd8fd36710321498745f24cc6b59ac02f0", "type": "git", "url": "https://git.bioconductor.org/packages/ROTS" } ], "version": "1.12.0" }, { "repositories": [ { "commit": "1d4e206a8ce68d5a1417ff51c26174ed9d0ba7d2", "type": "git", "url": "https://git.bioconductor.org/packages/ROTS" } ], "version": "1.18.0" }, { "repositories": [ { "commit": "a53ec77c40ed3b3c84e91d794c1602dd509cad83", "type": "git", "url": "https://git.bioconductor.org/packages/ROTS" } ], "version": "1.22.0" }, { "repositories": [ { "commit": "372e4623b39f585d4196d21164436c1ba013173f", "type": "git", "url": "https://git.bioconductor.org/packages/ROTS" } ], "version": "1.24.0" }, { "repositories": [ { "commit": "8bb45fe78779583ae4d30cf0dc3af0d8de405fdf", "type": "git", "url": "https://git.bioconductor.org/packages/ROTS" } ], "version": "1.26.0" }, { "repositories": [ { "commit": "032cb97ed6fe303758856c669a4f63fb9e43d124", "type": "git", "url": "https://git.bioconductor.org/packages/ROTS" } ], "version": "1.28.0" }, { "repositories": [ { "commit": "2e656514a4bf5a837ee6e14ce9b28a61dab955e7", "type": "git", "url": "https://git.bioconductor.org/packages/ROTS" } ], "version": "1.4.0" }, { "repositories": [ { "commit": "3567ac1142ba97770b701ee8e5f9e3e6c781bd56", "type": "git", "url": "https://git.bioconductor.org/packages/ROTS" } ], "version": "1.6.0" }, { "repositories": [ { "commit": "02e3c6455bb1afe7c4cc59ad6d4d8bae7b01428b", "type": "git", "url": "https://git.bioconductor.org/packages/ROTS" } ], "version": "1.8.0" } ] }, "r-roxygen2": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-brew", "r-cli", "r-commonmark", "r-cpp11", "r-desc", "r-digest", "r-knitr", "r-pkgload", "r-purrr", "r-r6", "r-rcpp", "r-rlang", "r-stringi", "r-stringr", "r-withr", "r-xml2" ], "downloads": [ "https://cloud.r-project.org/src/contrib/roxygen2_7.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/roxygen2_7.2.3.tar.gz", "https://cloud.r-project.org/src/contrib/roxygen2_7.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/roxygen2_7.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/roxygen2_7.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/roxygen2_7.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/roxygen2_7.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/roxygen2_6.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/roxygen2_5.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=roxygen2" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-roxygen2", "patches": [], "summary": "In-Line Documentation for R. Generate your Rd documentation, 'NAMESPACE'\nfile, and collation field using specially formatted comments. Writing\ndocumentation in-line with code makes it easier to keep your\ndocumentation up-to-date as your requirements change. 'Roxygen2' is\ninspired by the 'Doxygen' system for C++.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/roxygen2_5.0.1.tar.gz" ], "version": "5.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/roxygen2_6.1.1.tar.gz" ], "version": "6.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/roxygen2_7.1.0.tar.gz" ], "version": "7.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/roxygen2_7.1.1.tar.gz" ], "version": "7.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/roxygen2_7.1.2.tar.gz" ], "version": "7.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/roxygen2_7.2.0.tar.gz" ], "version": "7.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/roxygen2_7.2.1.tar.gz" ], "version": "7.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/roxygen2_7.2.3.tar.gz" ], "version": "7.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/roxygen2_7.3.2.tar.gz" ], "version": "7.3.2" } ] }, "r-rpart": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rpart_4.1.23.tar.gz", "https://cloud.r-project.org/src/contrib/rpart_4.1.19.tar.gz", "https://cloud.r-project.org/src/contrib/rpart_4.1.16.tar.gz", "https://cloud.r-project.org/src/contrib/rpart_4.1-15.tar.gz", "https://cloud.r-project.org/src/contrib/rpart_4.1-13.tar.gz", "https://cloud.r-project.org/src/contrib/rpart_4.1-11.tar.gz", "https://cloud.r-project.org/src/contrib/rpart_4.1-10.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rpart" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-rpart", "patches": [], "summary": "Recursive Partitioning and Regression Trees. Recursive partitioning for\nclassification, regression and survival trees. An implementation of most\nof the functionality of the 1984 book by Breiman, Friedman, Olshen and\nStone.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rpart_4.1-10.tar.gz" ], "version": "4.1-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rpart_4.1-11.tar.gz" ], "version": "4.1-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rpart_4.1-13.tar.gz" ], "version": "4.1-13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rpart_4.1-15.tar.gz" ], "version": "4.1-15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rpart_4.1.16.tar.gz" ], "version": "4.1.16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rpart_4.1.19.tar.gz" ], "version": "4.1.19" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rpart_4.1.23.tar.gz" ], "version": "4.1.23" } ] }, "r-rpart-plot": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-rpart" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rpart.plot_3.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/rpart.plot_3.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/rpart.plot_3.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/rpart.plot_3.0.9.tar.gz", "https://cloud.r-project.org/src/contrib/rpart.plot_3.0.7.tar.gz", "https://cloud.r-project.org/src/contrib/rpart.plot_3.0.6.tar.gz", "https://cloud.r-project.org/src/contrib/rpart.plot_2.1.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rpart.plot" ], "licenses": [], "maintainers": [], "name": "r-rpart-plot", "patches": [], "summary": "Plot 'rpart' Models: An Enhanced Version of 'plot.rpart'. Plot 'rpart'\nmodels. Extends plot.rpart() and text.rpart() in the 'rpart' package.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rpart.plot_2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rpart.plot_3.0.6.tar.gz" ], "version": "3.0.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rpart.plot_3.0.7.tar.gz" ], "version": "3.0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rpart.plot_3.0.9.tar.gz" ], "version": "3.0.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rpart.plot_3.1.0.tar.gz" ], "version": "3.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rpart.plot_3.1.1.tar.gz" ], "version": "3.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rpart.plot_3.1.2.tar.gz" ], "version": "3.1.2" } ] }, "r-rpmm": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cluster" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RPMM_1.25.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RPMM" ], "licenses": [], "maintainers": [], "name": "r-rpmm", "patches": [], "summary": "Recursively Partitioned Mixture Model. Recursively Partitioned Mixture\nModel for Beta and Gaussian Mixtures. This is a model-based clustering\nalgorithm that returns a hierarchy of classes, similar to hierarchical\nclustering, but also similar to finite mixture models.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RPMM_1.25.tar.gz" ], "version": "1.25" } ] }, "r-rpostgres": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "postgresql", "r", "r-bh", "r-bit64", "r-blob", "r-cpp11", "r-dbi", "r-hms", "r-lubridate", "r-plogr", "r-rcpp", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RPostgres_1.4.7.tar.gz", "https://cloud.r-project.org/src/contrib/RPostgres_1.4.5.tar.gz", "https://cloud.r-project.org/src/contrib/RPostgres_1.4.4.tar.gz", "https://cloud.r-project.org/src/contrib/RPostgres_1.4.3.tar.gz", "https://cloud.r-project.org/src/contrib/RPostgres_1.3.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RPostgres" ], "licenses": [], "maintainers": [], "name": "r-rpostgres", "patches": [], "summary": "'Rcpp' Interface to 'PostgreSQL'. Fully 'DBI'-compliant 'Rcpp'-backed\ninterface to 'PostgreSQL' , an open-source\nrelational database.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RPostgres_1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RPostgres_1.4.3.tar.gz" ], "version": "1.4.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RPostgres_1.4.4.tar.gz" ], "version": "1.4.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RPostgres_1.4.5.tar.gz" ], "version": "1.4.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RPostgres_1.4.7.tar.gz" ], "version": "1.4.7" } ] }, "r-rpostgresql": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "postgresql", "r", "r-dbi" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RPostgreSQL_0.7-6.tar.gz", "https://cloud.r-project.org/src/contrib/RPostgreSQL_0.7-5.tar.gz", "https://cloud.r-project.org/src/contrib/RPostgreSQL_0.7-4.tar.gz", "https://cloud.r-project.org/src/contrib/RPostgreSQL_0.7-3.tar.gz", "https://cloud.r-project.org/src/contrib/RPostgreSQL_0.6-2.tar.gz", "https://cloud.r-project.org/src/contrib/RPostgreSQL_0.4-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RPostgreSQL" ], "licenses": [ "PostgreSQL" ], "maintainers": [], "name": "r-rpostgresql", "patches": [], "summary": "R Interface to the 'PostgreSQL' Database System. Database interface and\nPostgreSQL driver for R This package provides a Database Interface (DBI)\ncompliant driver for R to access PostgreSQL database systems. In order\nto build and install this package from source, PostgreSQL itself must be\npresent your system to provide PostgreSQL functionality via its\nlibraries and header files. These files are provided as postgresql-devel\npackage under some Linux distributions. On Microsoft Windows system the\nattached libpq library source will be used. A wiki and issue tracking\nsystem for the package are available at Google Code at\nhttps://code.google.com/p/rpostgresql/.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RPostgreSQL_0.4-1.tar.gz" ], "version": "0.4-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RPostgreSQL_0.6-2.tar.gz" ], "version": "0.6-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RPostgreSQL_0.7-3.tar.gz" ], "version": "0.7-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RPostgreSQL_0.7-4.tar.gz" ], "version": "0.7-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RPostgreSQL_0.7-5.tar.gz" ], "version": "0.7-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RPostgreSQL_0.7-6.tar.gz" ], "version": "0.7-6" } ] }, "r-rprojroot": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-backports" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rprojroot_2.0.4.tar.gz", "https://cloud.r-project.org/src/contrib/rprojroot_2.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/rprojroot_2.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/rprojroot_1.3-2.tar.gz", "https://cloud.r-project.org/src/contrib/rprojroot_1.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rprojroot" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-rprojroot", "patches": [], "summary": "Finding Files in Project Subdirectories. Robust, reliable and flexible\npaths to files below a project root. The 'root' of a project is defined\nas a directory that matches a certain criterion, e.g., it contains a\ncertain regular file.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rprojroot_1.2.tar.gz" ], "version": "1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rprojroot_1.3-2.tar.gz" ], "version": "1.3-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rprojroot_2.0.2.tar.gz" ], "version": "2.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rprojroot_2.0.3.tar.gz" ], "version": "2.0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rprojroot_2.0.4.tar.gz" ], "version": "2.0.4" } ] }, "r-rpsychi": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-gtools" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rpsychi_0.8.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rpsychi" ], "licenses": [], "maintainers": [], "name": "r-rpsychi", "patches": [], "summary": "Statistics for psychiatric research. The rpsychi offers a number of\nfunctions for psychiatry, psychiatric nursing, clinical psychology.\nFunctions are primarily for statistical significance testing using\npublished work. For example, you can conduct a factorial analysis of\nvariance (ANOVA), which requires only the mean, standard deviation, and\nsample size for each cell, rather than the individual data. This package\ncovers fundamental statistical tests such as t-test, chi-square test,\nanalysis of variance, and multiple regression analysis. With some\nexceptions, you can obtain effect size and its confidence interval.\nThese functions help you to obtain effect size from published work, and\nthen to conduct a priori power analysis or meta-analysis, even if a\nresearcher do not report effect size in a published work.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rpsychi_0.8.tar.gz" ], "version": "0.8" } ] }, "r-rrblup": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rrBLUP_4.6.3.tar.gz", "https://cloud.r-project.org/src/contrib/rrBLUP_4.6.2.tar.gz", "https://cloud.r-project.org/src/contrib/rrBLUP_4.6.1.tar.gz", "https://cloud.r-project.org/src/contrib/rrBLUP_4.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rrBLUP" ], "licenses": [], "maintainers": [], "name": "r-rrblup", "patches": [], "summary": "Ridge Regression and Other Kernels for Genomic Selection. Software for\ngenomic prediction with the RR-BLUP mixed model (Endelman 2011,\n). One application is to estimate\nmarker effects by ridge regression; alternatively, BLUPs can be\ncalculated based on an additive relationship matrix or a Gaussian\nkernel.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rrBLUP_4.6.tar.gz" ], "version": "4.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rrBLUP_4.6.1.tar.gz" ], "version": "4.6.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rrBLUP_4.6.2.tar.gz" ], "version": "4.6.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rrBLUP_4.6.3.tar.gz" ], "version": "4.6.3" } ] }, "r-rrcov": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-cluster", "r-lattice", "r-mvtnorm", "r-pcapp", "r-robustbase" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rrcov_1.7-6.tar.gz", "https://cloud.r-project.org/src/contrib/rrcov_1.7-2.tar.gz", "https://cloud.r-project.org/src/contrib/rrcov_1.7-1.tar.gz", "https://cloud.r-project.org/src/contrib/rrcov_1.7-0.tar.gz", "https://cloud.r-project.org/src/contrib/rrcov_1.6-1.tar.gz", "https://cloud.r-project.org/src/contrib/rrcov_1.6-0.tar.gz", "https://cloud.r-project.org/src/contrib/rrcov_1.5-5.tar.gz", "https://cloud.r-project.org/src/contrib/rrcov_1.4-7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rrcov" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-rrcov", "patches": [], "summary": "Scalable Robust Estimators with High Breakdown Point. Robust Location\nand Scatter Estimation and Robust Multivariate Analysis with High\nBreakdown Point: principal component analysis (Filzmoser and Todorov\n(2013), ), linear and quadratic\ndiscriminant analysis (Todorov and Pires (2007)), multivariate tests\n(Todorov and Filzmoser (2010) ), outlier\ndetection (Todorov et al. (2010) ). See\nalso Todorov and Filzmoser (2009) , Todorov and\nFilzmoser (2010) and Boudt et al. (2019)\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rrcov_1.4-7.tar.gz" ], "version": "1.4-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rrcov_1.5-5.tar.gz" ], "version": "1.5-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rrcov_1.6-0.tar.gz" ], "version": "1.6-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rrcov_1.6-1.tar.gz" ], "version": "1.6-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rrcov_1.7-0.tar.gz" ], "version": "1.7-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rrcov_1.7-1.tar.gz" ], "version": "1.7-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rrcov_1.7-2.tar.gz" ], "version": "1.7-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rrcov_1.7-6.tar.gz" ], "version": "1.7-6" } ] }, "r-rrpp": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ape", "r-ggplot2", "r-matrix" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RRPP_2.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/RRPP_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/RRPP_1.2.3.tar.gz", "https://cloud.r-project.org/src/contrib/RRPP_1.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/RRPP_0.6.2.tar.gz", "https://cloud.r-project.org/src/contrib/RRPP_0.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/RRPP_0.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/RRPP_0.3.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RRPP" ], "licenses": [], "maintainers": [], "name": "r-rrpp", "patches": [], "summary": "Linear Model Evaluation with Randomized Residuals in a Permutation\nProcedure. Linear model calculations are made for many random versions\nof data. Using residual randomization in a permutation procedure, sums\nof squares are calculated over many permutations to generate empirical\nprobability distributions for evaluating model effects. This packaged is\ndescribed by Collyer & Adams (2018) .\nAdditionally, coefficients, statistics, fitted values, and residuals\ngenerated over many permutations can be used for various procedures\nincluding pairwise tests, prediction, classification, and model\ncomparison. This package should provide most tools one could need for\nthe analysis of high-dimensional data, especially in ecology and\nevolutionary biology, but certainly other fields, as well.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RRPP_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RRPP_0.4.1.tar.gz" ], "version": "0.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RRPP_0.4.2.tar.gz" ], "version": "0.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RRPP_0.6.2.tar.gz" ], "version": "0.6.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RRPP_1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RRPP_1.2.3.tar.gz" ], "version": "1.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RRPP_1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RRPP_2.0.3.tar.gz" ], "version": "2.0.3" } ] }, "r-rsamtools": { "alias": [], "categories": [], "dependencies": [ "c", "curl", "cxx", "gmake", "r", "r-biocgenerics", "r-biocparallel", "r-biostrings", "r-bitops", "r-genomeinfodb", "r-genomicranges", "r-iranges", "r-rhtslib", "r-s4vectors", "r-xvector", "r-zlibbioc", "zlib-api" ], "downloads": [ "https://git.bioconductor.org/packages/Rsamtools" ], "homepages": [ "https://bioconductor.org/packages/Rsamtools" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-rsamtools", "patches": [], "summary": "Binary alignment (BAM), FASTA, variant call (BCF), and tabix file\nimport. This package provides an interface to the 'samtools',\n'bcftools', and 'tabix' utilities for manipulating SAM (Sequence\nAlignment / Map), FASTA, binary variant call (BCF) and compressed\nindexed tab-delimited (tabix) files.\n", "version": [ { "repositories": [ { "commit": "dfa5b6abef68175586f21add7927174786412472", "type": "git", "url": "https://git.bioconductor.org/packages/Rsamtools" } ], "version": "1.28.0" }, { "repositories": [ { "commit": "61b365fe3762e796b3808cec7238944b7f68d7a6", "type": "git", "url": "https://git.bioconductor.org/packages/Rsamtools" } ], "version": "1.30.0" }, { "repositories": [ { "commit": "0aa3f134143b045aa423894de81912becf64e4c2", "type": "git", "url": "https://git.bioconductor.org/packages/Rsamtools" } ], "version": "1.32.3" }, { "repositories": [ { "commit": "0ec1d45c7a14b51d019c3e20c4aa87c6bd2b0d0c", "type": "git", "url": "https://git.bioconductor.org/packages/Rsamtools" } ], "version": "1.34.1" }, { "repositories": [ { "commit": "17d254cc026574d20db67474260944bf60befd70", "type": "git", "url": "https://git.bioconductor.org/packages/Rsamtools" } ], "version": "2.0.3" }, { "repositories": [ { "commit": "b19738e85a467f9032fc7903be3ba10e655e7061", "type": "git", "url": "https://git.bioconductor.org/packages/Rsamtools" } ], "version": "2.10.0" }, { "repositories": [ { "commit": "d6a65dd57c5a17e4c441a27492e92072f69b175e", "type": "git", "url": "https://git.bioconductor.org/packages/Rsamtools" } ], "version": "2.12.0" }, { "repositories": [ { "commit": "8302eb7fa1c40384f1af5855222d94f2efbdcad1", "type": "git", "url": "https://git.bioconductor.org/packages/Rsamtools" } ], "version": "2.14.0" }, { "repositories": [ { "commit": "3eb6d03acecb8d640ec5201cacdc322e9e0c2445", "type": "git", "url": "https://git.bioconductor.org/packages/Rsamtools" } ], "version": "2.16.0" }, { "repositories": [ { "commit": "f10084658b4c9744961fcacd79c0ae9a7a40cd30", "type": "git", "url": "https://git.bioconductor.org/packages/Rsamtools" } ], "version": "2.2.1" }, { "repositories": [ { "commit": "5fa43af28dd6ae25fbabd23e2e7329003ba53e30", "type": "git", "url": "https://git.bioconductor.org/packages/Rsamtools" } ], "version": "2.24.0" }, { "repositories": [ { "commit": "f2aea061517c5a55e314c039251ece9831c7fad2", "type": "git", "url": "https://git.bioconductor.org/packages/Rsamtools" } ], "version": "2.6.0" } ] }, "r-rsconnect": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-curl", "r-digest", "r-jsonlite", "r-lifecycle", "r-openssl", "r-packrat", "r-pki", "r-renv", "r-rlang", "r-rstudioapi", "r-yaml" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rsconnect_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/rsconnect_0.8.29.tar.gz", "https://cloud.r-project.org/src/contrib/rsconnect_0.8.28.tar.gz", "https://cloud.r-project.org/src/contrib/rsconnect_0.8.27.tar.gz", "https://cloud.r-project.org/src/contrib/rsconnect_0.8.26.tar.gz", "https://cloud.r-project.org/src/contrib/rsconnect_0.8.25.tar.gz", "https://cloud.r-project.org/src/contrib/rsconnect_0.8.17.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rsconnect" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-rsconnect", "patches": [], "summary": "Deployment Interface for R Markdown Documents and Shiny Applications.\nProgrammatic deployment interface for 'RPubs', 'shinyapps.io', and\n'RStudio Connect'. Supported content types include R Markdown documents,\nShiny applications, Plumber APIs, plots, and static web content.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rsconnect_0.8.17.tar.gz" ], "version": "0.8.17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rsconnect_0.8.25.tar.gz" ], "version": "0.8.25" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rsconnect_0.8.26.tar.gz" ], "version": "0.8.26" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rsconnect_0.8.27.tar.gz" ], "version": "0.8.27" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rsconnect_0.8.28.tar.gz" ], "version": "0.8.28" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rsconnect_0.8.29.tar.gz" ], "version": "0.8.29" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rsconnect_1.3.1.tar.gz" ], "version": "1.3.1" } ] }, "r-rsnns": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RSNNS_0.4-17.tar.gz", "https://cloud.r-project.org/src/contrib/RSNNS_0.4-15.tar.gz", "https://cloud.r-project.org/src/contrib/RSNNS_0.4-14.tar.gz", "https://cloud.r-project.org/src/contrib/RSNNS_0.4-12.tar.gz", "https://cloud.r-project.org/src/contrib/RSNNS_0.4-11.tar.gz", "https://cloud.r-project.org/src/contrib/RSNNS_0.4-10.1.tar.gz", "https://cloud.r-project.org/src/contrib/RSNNS_0.4-7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RSNNS" ], "licenses": [], "maintainers": [], "name": "r-rsnns", "patches": [], "summary": "Neural Networks using the Stuttgart Neural Network Simulator (SNNS). The\nStuttgart Neural Network Simulator (SNNS) is a library containing many\nstandard implementations of neural networks. This package wraps the SNNS\nfunctionality to make it available from within R. Using the RSNNS low-\nlevel interface, all of the algorithmic functionality and flexibility of\nSNNS can be accessed. Furthermore, the package contains a convenient\nhigh-level interface, so that the most common neural network topologies\nand learning algorithms integrate seamlessly into R.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RSNNS_0.4-10.1.tar.gz" ], "version": "0.4-10.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RSNNS_0.4-11.tar.gz" ], "version": "0.4-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RSNNS_0.4-12.tar.gz" ], "version": "0.4-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RSNNS_0.4-14.tar.gz" ], "version": "0.4-14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RSNNS_0.4-15.tar.gz" ], "version": "0.4-15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RSNNS_0.4-17.tar.gz" ], "version": "0.4-17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RSNNS_0.4-7.tar.gz" ], "version": "0.4-7" } ] }, "r-rsolnp": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-truncnorm" ], "downloads": [ "https://cloud.r-project.org/src/contrib/Rsolnp_1.16.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=Rsolnp" ], "licenses": [], "maintainers": [], "name": "r-rsolnp", "patches": [], "summary": "General Non-Linear Optimization. General Non-linear Optimization Using\nAugmented Lagrange Multiplier Method.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/Rsolnp_1.16.tar.gz" ], "version": "1.16" } ] }, "r-rspectra": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-matrix", "r-rcpp", "r-rcppeigen" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RSpectra_0.16-2.tar.gz", "https://cloud.r-project.org/src/contrib/RSpectra_0.16-1.tar.gz", "https://cloud.r-project.org/src/contrib/RSpectra_0.16-0.tar.gz", "https://cloud.r-project.org/src/contrib/RSpectra_0.15-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RSpectra" ], "licenses": [], "maintainers": [], "name": "r-rspectra", "patches": [], "summary": "Solvers for Large-Scale Eigenvalue and SVD Problems. R interface to the\n'Spectra' library for large-scale eigenvalue\nand SVD problems. It is typically used to compute a few\neigenvalues/vectors of an n by n matrix, e.g., the k largest\neigenvalues, which is usually more efficient than eigen() if k << n.\nThis package provides the 'eigs()' function that does the similar job as\nin 'Matlab', 'Octave', 'Python SciPy' and 'Julia'. It also provides the\n'svds()' function to calculate the largest k singular values and\ncorresponding singular vectors of a real matrix. The matrix to be\ncomputed on can be dense, sparse, or in the form of an operator defined\nby the user.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RSpectra_0.15-0.tar.gz" ], "version": "0.15-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RSpectra_0.16-0.tar.gz" ], "version": "0.16-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RSpectra_0.16-1.tar.gz" ], "version": "0.16-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RSpectra_0.16-2.tar.gz" ], "version": "0.16-2" } ] }, "r-rsqlite": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-bh", "r-bit64", "r-blob", "r-cpp11", "r-dbi", "r-memoise", "r-pkgconfig", "r-plogr", "r-rcpp", "r-rlang" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RSQLite_2.3.7.tar.gz", "https://cloud.r-project.org/src/contrib/RSQLite_2.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/RSQLite_2.2.18.tar.gz", "https://cloud.r-project.org/src/contrib/RSQLite_2.2.14.tar.gz", "https://cloud.r-project.org/src/contrib/RSQLite_2.2.10.tar.gz", "https://cloud.r-project.org/src/contrib/RSQLite_2.2.9.tar.gz", "https://cloud.r-project.org/src/contrib/RSQLite_2.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/RSQLite_2.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/RSQLite_2.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/RSQLite_2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RSQLite" ], "licenses": [], "maintainers": [], "name": "r-rsqlite", "patches": [], "summary": "'SQLite' Interface for R. This package embeds the SQLite database engine\nin R and provides an interface compliant with the DBI package. The\nsource for the SQLite engine (version 3.8.6) is included.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RSQLite_2.0.tar.gz" ], "version": "2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RSQLite_2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RSQLite_2.1.2.tar.gz" ], "version": "2.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RSQLite_2.2.10.tar.gz" ], "version": "2.2.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RSQLite_2.2.14.tar.gz" ], "version": "2.2.14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RSQLite_2.2.18.tar.gz" ], "version": "2.2.18" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RSQLite_2.2.2.tar.gz" ], "version": "2.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RSQLite_2.2.9.tar.gz" ], "version": "2.2.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RSQLite_2.3.1.tar.gz" ], "version": "2.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RSQLite_2.3.7.tar.gz" ], "version": "2.3.7" } ] }, "r-rstan": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "pandoc", "r", "r-bh", "r-ggplot2", "r-gridextra", "r-inline", "r-loo", "r-pkgbuild", "r-quickjsr", "r-rcpp", "r-rcppeigen", "r-rcppparallel", "r-stanheaders", "r-v8", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rstan_2.32.7.tar.gz", "https://cloud.r-project.org/src/contrib/rstan_2.32.6.tar.gz", "https://cloud.r-project.org/src/contrib/rstan_2.21.8.tar.gz", "https://cloud.r-project.org/src/contrib/rstan_2.21.7.tar.gz", "https://cloud.r-project.org/src/contrib/rstan_2.21.5.tar.gz", "https://cloud.r-project.org/src/contrib/rstan_2.21.3.tar.gz", "https://cloud.r-project.org/src/contrib/rstan_2.21.2.tar.gz", "https://cloud.r-project.org/src/contrib/rstan_2.19.2.tar.gz", "https://cloud.r-project.org/src/contrib/rstan_2.18.2.tar.gz", "https://cloud.r-project.org/src/contrib/rstan_2.17.2.tar.gz", "https://cloud.r-project.org/src/contrib/rstan_2.10.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rstan" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-rstan", "patches": [], "summary": "R Interface to Stan. User-facing R functions are provided to parse,\ncompile, test, estimate, and analyze Stan models by accessing the\nheader-only Stan library provided by the 'StanHeaders' package. The Stan\nproject develops a probabilistic programming language that implements\nfull Bayesian statistical inference via Markov Chain Monte Carlo, rough\nBayesian inference via variational approximation, and (optionally\npenalized) maximum likelihood estimation via optimization. In all three\ncases, automatic differentiation is used to quickly and accurately\nevaluate gradients without burdening the user with the need to derive\nthe partial derivatives.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rstan_2.10.1.tar.gz" ], "version": "2.10.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstan_2.17.2.tar.gz" ], "version": "2.17.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstan_2.18.2.tar.gz" ], "version": "2.18.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstan_2.19.2.tar.gz" ], "version": "2.19.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstan_2.21.2.tar.gz" ], "version": "2.21.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstan_2.21.3.tar.gz" ], "version": "2.21.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstan_2.21.5.tar.gz" ], "version": "2.21.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstan_2.21.7.tar.gz" ], "version": "2.21.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstan_2.21.8.tar.gz" ], "version": "2.21.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstan_2.32.6.tar.gz" ], "version": "2.32.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstan_2.32.7.tar.gz" ], "version": "2.32.7" } ] }, "r-rstantools": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "pandoc", "r", "r-desc", "r-rcpp", "r-rcppparallel" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rstantools_2.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/rstantools_2.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/rstantools_2.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/rstantools_2.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/rstantools_1.5.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rstantools" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-rstantools", "patches": [], "summary": "Tools for Developing R Packages Interfacing with 'Stan'. Provides\nvarious tools for developers of R packages interfacing with 'Stan'\n, including functions to set up the required\npackage structure, S3 generics and default methods to unify function\nnaming across 'Stan'-based R packages, and vignettes with\nrecommendations for developers.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rstantools_1.5.1.tar.gz" ], "version": "1.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstantools_2.1.1.tar.gz" ], "version": "2.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstantools_2.2.0.tar.gz" ], "version": "2.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstantools_2.3.1.tar.gz" ], "version": "2.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstantools_2.4.0.tar.gz" ], "version": "2.4.0" } ] }, "r-rstatix": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-broom", "r-car", "r-corrplot", "r-dplyr", "r-generics", "r-magrittr", "r-purrr", "r-rlang", "r-tibble", "r-tidyr", "r-tidyselect" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rstatix_0.7.2.tar.gz", "https://cloud.r-project.org/src/contrib/rstatix_0.7.0.tar.gz", "https://cloud.r-project.org/src/contrib/rstatix_0.6.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rstatix" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-rstatix", "patches": [], "summary": "Pipe-Friendly Framework for Basic Statistical Tests. Provides a simple\nand intuitive pipe-friendly framework, coherent with the 'tidyverse'\ndesign philosophy, for performing basic statistical tests, including\nt-test, Wilcoxon test, ANOVA, Kruskal-Wallis and correlation analyses.\nThe output of each test is automatically transformed into a tidy data\nframe to facilitate visualization. Additional functions are available\nfor reshaping, reordering, manipulating and visualizing correlation\nmatrix. Functions are also included to facilitate the analysis of\nfactorial experiments, including purely 'within-Ss' designs (repeated\nmeasures), purely 'between-Ss' designs, and mixed 'within-and-between-\nSs' designs. It's also possible to compute several effect size metrics,\nincluding \"eta squared\" for ANOVA, \"Cohen's d\" for t-test and 'Cramer V'\nfor the association between categorical variables. The package contains\nhelper functions for identifying univariate and multivariate outliers,\nassessing normality and homogeneity of variances.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rstatix_0.6.0.tar.gz" ], "version": "0.6.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstatix_0.7.0.tar.gz" ], "version": "0.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstatix_0.7.2.tar.gz" ], "version": "0.7.2" } ] }, "r-rstudioapi": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rstudioapi_0.16.0.tar.gz", "https://cloud.r-project.org/src/contrib/rstudioapi_0.14.tar.gz", "https://cloud.r-project.org/src/contrib/rstudioapi_0.13.tar.gz", "https://cloud.r-project.org/src/contrib/rstudioapi_0.11.tar.gz", "https://cloud.r-project.org/src/contrib/rstudioapi_0.10.tar.gz", "https://cloud.r-project.org/src/contrib/rstudioapi_0.9.0.tar.gz", "https://cloud.r-project.org/src/contrib/rstudioapi_0.7.tar.gz", "https://cloud.r-project.org/src/contrib/rstudioapi_0.6.tar.gz", "https://cloud.r-project.org/src/contrib/rstudioapi_0.5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rstudioapi" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-rstudioapi", "patches": [], "summary": "Safely Access the RStudio API. Access the RStudio API (if available) and\nprovide informative error messages when it's not.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rstudioapi_0.10.tar.gz" ], "version": "0.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstudioapi_0.11.tar.gz" ], "version": "0.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstudioapi_0.13.tar.gz" ], "version": "0.13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstudioapi_0.14.tar.gz" ], "version": "0.14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstudioapi_0.16.0.tar.gz" ], "version": "0.16.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstudioapi_0.5.tar.gz" ], "version": "0.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstudioapi_0.6.tar.gz" ], "version": "0.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstudioapi_0.7.tar.gz" ], "version": "0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rstudioapi_0.9.0.tar.gz" ], "version": "0.9.0" } ] }, "r-rsubread": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-matrix", "r-r-utils", "zlib-api" ], "downloads": [ "https://git.bioconductor.org/packages/Rsubread" ], "homepages": [ "https://bioconductor.org/packages/Rsubread" ], "licenses": [], "maintainers": [], "name": "r-rsubread", "patches": [], "summary": "Mapping, quantification and variant analysis of sequencing data\n", "version": [ { "repositories": [ { "commit": "863bd98c6523b888da59335a6acb516d2676d412", "type": "git", "url": "https://git.bioconductor.org/packages/Rsubread" } ], "version": "2.14.2" }, { "repositories": [ { "commit": "62b92c9ed3fc2be89ed9f29e3db1809d1e115dbc", "type": "git", "url": "https://git.bioconductor.org/packages/Rsubread" } ], "version": "2.16.0" } ] }, "r-rsvd": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-matrix" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rsvd_1.0.5.tar.gz", "https://cloud.r-project.org/src/contrib/rsvd_1.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/rsvd_1.0.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rsvd" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-rsvd", "patches": [], "summary": "Randomized Singular Value Decomposition. Low-rank matrix decompositions\nare fundamental tools and widely used for data analysis, dimension\nreduction, and data compression. Classically, highly accurate\ndeterministic matrix algorithms are used for this task. However, the\nemergence of large-scale data has severely challenged our computational\nability to analyze big data. The concept of randomness has been\ndemonstrated as an effective strategy to quickly produce approximate\nanswers to familiar problems such as the singular value decomposition\n(SVD). The rsvd package provides several randomized matrix algorithms\nsuch as the randomized singular value decomposition (rsvd), randomized\nprincipal component analysis (rpca), randomized robust principal\ncomponent analysis (rrpca), randomized interpolative decomposition\n(rid), and the randomized CUR decomposition (rcur). In addition several\nplot functions are provided. The methods are discussed in detail by\nErichson et al. (2016) .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rsvd_1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rsvd_1.0.3.tar.gz" ], "version": "1.0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rsvd_1.0.5.tar.gz" ], "version": "1.0.5" } ] }, "r-rtracklayer": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "openssl", "r", "r-biocgenerics", "r-biocio", "r-biostrings", "r-genomeinfodb", "r-genomicalignments", "r-genomicranges", "r-iranges", "r-rcurl", "r-restfulr", "r-rsamtools", "r-s4vectors", "r-xml", "r-xvector", "r-zlibbioc", "zlib-api" ], "downloads": [ "https://git.bioconductor.org/packages/rtracklayer" ], "homepages": [ "https://bioconductor.org/packages/rtracklayer" ], "licenses": [], "maintainers": [], "name": "r-rtracklayer", "patches": [], "summary": "R interface to genome annotation files and the UCSC genome browser.\nExtensible framework for interacting with multiple genome browsers\n(currently UCSC built-in) and manipulating annotation tracks in various\nformats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit\nbuilt-in). The user may export/import tracks to/from the supported\nbrowsers, as well as query and modify the browser state, such as the\ncurrent viewport.\n", "version": [ { "repositories": [ { "commit": "8c0ac7230f94e0c5a981acbb178c8de70e968131", "type": "git", "url": "https://git.bioconductor.org/packages/rtracklayer" } ], "version": "1.36.6" }, { "repositories": [ { "commit": "f20db703c09dc7e808c09e9b78c15aec9e546248", "type": "git", "url": "https://git.bioconductor.org/packages/rtracklayer" } ], "version": "1.38.3" }, { "repositories": [ { "commit": "ba9a6e711504a702147383bc7abfcc36eb304df7", "type": "git", "url": "https://git.bioconductor.org/packages/rtracklayer" } ], "version": "1.40.6" }, { "repositories": [ { "commit": "76702f671faea736807d54aeecfbadcd152d94c5", "type": "git", "url": "https://git.bioconductor.org/packages/rtracklayer" } ], "version": "1.42.2" }, { "repositories": [ { "commit": "aec96e85daf53b5c5eb2e89250d2755352be4de3", "type": "git", "url": "https://git.bioconductor.org/packages/rtracklayer" } ], "version": "1.44.4" }, { "repositories": [ { "commit": "d2e61f72ff5d5a94c2c487ba108a37f23bfcc1e6", "type": "git", "url": "https://git.bioconductor.org/packages/rtracklayer" } ], "version": "1.50.0" }, { "repositories": [ { "commit": "04cdd75521a8364e67a49d7352500dd4a3e83c55", "type": "git", "url": "https://git.bioconductor.org/packages/rtracklayer" } ], "version": "1.54.0" }, { "repositories": [ { "commit": "1d70f7dc464ad87a1fde61588cd9ae0cb86b6e86", "type": "git", "url": "https://git.bioconductor.org/packages/rtracklayer" } ], "version": "1.56.0" }, { "repositories": [ { "commit": "4c6d2201fcb102d471bd88f4f51cc34317669955", "type": "git", "url": "https://git.bioconductor.org/packages/rtracklayer" } ], "version": "1.56.1" }, { "repositories": [ { "commit": "54a74972c08775fdf1e83e6e22cd0b8fad677fc1", "type": "git", "url": "https://git.bioconductor.org/packages/rtracklayer" } ], "version": "1.58.0" }, { "repositories": [ { "commit": "de35bc03116fc7ad30f0e425b41715c3cb2e783b", "type": "git", "url": "https://git.bioconductor.org/packages/rtracklayer" } ], "version": "1.60.0" } ] }, "r-rtsne": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/Rtsne_0.17.tar.gz", "https://cloud.r-project.org/src/contrib/Rtsne_0.16.tar.gz", "https://cloud.r-project.org/src/contrib/Rtsne_0.15.tar.gz", "https://cloud.r-project.org/src/contrib/Rtsne_0.13.tar.gz", "https://cloud.r-project.org/src/contrib/Rtsne_0.11.tar.gz", "https://cloud.r-project.org/src/contrib/Rtsne_0.10.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=Rtsne" ], "licenses": [], "maintainers": [], "name": "r-rtsne", "patches": [], "summary": "T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut\nImplementation. An R wrapper around the fast T-distributed Stochastic\nNeighbor Embedding implementation.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/Rtsne_0.10.tar.gz" ], "version": "0.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rtsne_0.11.tar.gz" ], "version": "0.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rtsne_0.13.tar.gz" ], "version": "0.13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rtsne_0.15.tar.gz" ], "version": "0.15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rtsne_0.16.tar.gz" ], "version": "0.16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Rtsne_0.17.tar.gz" ], "version": "0.17" } ] }, "r-runit": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RUnit_0.4.33.tar.gz", "https://cloud.r-project.org/src/contrib/RUnit_0.4.32.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RUnit" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-runit", "patches": [], "summary": "R Unit Test Framework. R functions implementing a standard Unit Testing\nframework, with additional code inspection and report generation tools.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RUnit_0.4.32.tar.gz" ], "version": "0.4.32" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/RUnit_0.4.33.tar.gz" ], "version": "0.4.33" } ] }, "r-runjags": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "jags", "r", "r-coda", "r-lattice" ], "downloads": [ "https://cloud.r-project.org/src/contrib/runjags_2.2.2-4.tar.gz", "https://cloud.r-project.org/src/contrib/runjags_2.2.1-7.tar.gz", "https://cloud.r-project.org/src/contrib/runjags_2.2.0-3.tar.gz", "https://cloud.r-project.org/src/contrib/runjags_2.2.0-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=runjags" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-runjags", "patches": [], "summary": "Interface Utilities, Model Templates, Parallel Computing Methods and\nAdditional Distributions for MCMC Models in JAGS. User-friendly\ninterface utilities for MCMC models via Just Another Gibbs Sampler\n(JAGS), facilitating the use of parallel (or distributed) processors for\nmultiple chains, automated control of convergence and sample length\ndiagnostics, and evaluation of the performance of a model using drop-k\nvalidation or against simulated data. Template model specifications can\nbe generated using a standard lme4-style formula interface to assist\nusers less familiar with the BUGS syntax. A JAGS extension module\nprovides additional distributions including the Pareto family of\ndistributions, the DuMouchel prior and the half-Cauchy prior.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/runjags_2.2.0-2.tar.gz" ], "version": "2.2.0-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/runjags_2.2.0-3.tar.gz" ], "version": "2.2.0-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/runjags_2.2.1-7.tar.gz" ], "version": "2.2.1-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/runjags_2.2.2-4.tar.gz" ], "version": "2.2.2-4" } ] }, "r-ruv": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-ggplot2", "r-gridextra", "r-scales" ], "downloads": [ "https://cloud.r-project.org/src/contrib/ruv_0.9.7.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=ruv" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-ruv", "patches": [], "summary": "Detect and Remove Unwanted Variation using Negative Controls. Implements\nthe 'RUV' (Remove Unwanted Variation) algorithms. These algorithms\nattempt to adjust for systematic errors of unknown origin in high-\ndimensional data. The algorithms were originally developed for use with\ngenomic data, especially microarray data, but may be useful with other\ntypes of high-dimensional data as well. These algorithms were proposed\nin Gagnon-Bartsch and Speed (2012) , Gagnon-\nBartsch, Jacob and Speed (2013), and Molania, et. al. (2019)\n. The algorithms require the user to specify a\nset of negative control variables, as described in the references. The\nalgorithms included in this package are 'RUV-2', 'RUV-4', 'RUV-inv',\n'RUV-rinv', 'RUV-I', and RUV-III', along with various supporting\nalgorithms.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/ruv_0.9.7.1.tar.gz" ], "version": "0.9.7.1" } ] }, "r-rvcheck": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-biocmanager", "r-rlang", "r-yulab-utils" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rvcheck_0.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/rvcheck_0.1.8.tar.gz", "https://cloud.r-project.org/src/contrib/rvcheck_0.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/rvcheck_0.0.9.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rvcheck" ], "licenses": [ "Artistic-2.0" ], "maintainers": [], "name": "r-rvcheck", "patches": [], "summary": "R/Package Version Check. Check latest release version of R and R package\n(both in 'CRAN', 'Bioconductor' or 'Github').\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rvcheck_0.0.9.tar.gz" ], "version": "0.0.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rvcheck_0.1.3.tar.gz" ], "version": "0.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rvcheck_0.1.8.tar.gz" ], "version": "0.1.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rvcheck_0.2.1.tar.gz" ], "version": "0.2.1" } ] }, "r-rversions": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-curl", "r-xml2" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rversions_2.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/rversions_2.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/rversions_2.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/rversions_2.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/rversions_2.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/rversions_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/rversions_1.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/rversions_1.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/rversions_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/rversions_1.0.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rversions" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-rversions", "patches": [], "summary": "Query 'R' Versions, Including 'r-release' and 'r-oldrel'. Query the main\n'R' 'SVN' repository to find the versions 'r-release' and 'r-oldrel'\nrefer to, and also all previous 'R' versions and their release dates.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rversions_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rversions_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rversions_1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rversions_1.0.3.tar.gz" ], "version": "1.0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rversions_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rversions_2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rversions_2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rversions_2.0.2.tar.gz" ], "version": "2.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rversions_2.1.1.tar.gz" ], "version": "2.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rversions_2.1.2.tar.gz" ], "version": "2.1.2" } ] }, "r-rvest": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-glue", "r-httr", "r-lifecycle", "r-magrittr", "r-rlang", "r-selectr", "r-tibble", "r-withr", "r-xml2" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rvest_1.0.4.tar.gz", "https://cloud.r-project.org/src/contrib/rvest_1.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/rvest_1.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/rvest_0.3.6.tar.gz", "https://cloud.r-project.org/src/contrib/rvest_0.3.4.tar.gz", "https://cloud.r-project.org/src/contrib/rvest_0.3.3.tar.gz", "https://cloud.r-project.org/src/contrib/rvest_0.3.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rvest" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-rvest", "patches": [], "summary": "Easily Harvest (Scrape) Web Pages. Wrappers around the 'xml2' and 'httr'\npackages to make it easy to download, then manipulate, HTML and XML.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rvest_0.3.2.tar.gz" ], "version": "0.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rvest_0.3.3.tar.gz" ], "version": "0.3.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rvest_0.3.4.tar.gz" ], "version": "0.3.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rvest_0.3.6.tar.gz" ], "version": "0.3.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rvest_1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rvest_1.0.3.tar.gz" ], "version": "1.0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rvest_1.0.4.tar.gz" ], "version": "1.0.4" } ] }, "r-rviennacl": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/RViennaCL_1.7.1.8.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=RViennaCL" ], "licenses": [], "maintainers": [], "name": "r-rviennacl", "patches": [], "summary": "'ViennaCL' C++ Header Files. 'ViennaCL' is a free open-source linear\nalgebra library for computations on many-core architectures (GPUs, MIC)\nand multi-core CPUs. The library is written in C++ and supports 'CUDA',\n'OpenCL', and 'OpenMP' (including switches at runtime). I have placed\nthese libraries in this package as a more efficient distribution system\nfor CRAN. The idea is that you can write a package that depends on the\n'ViennaCL' library and yet you do not need to distribute a copy of this\ncode with your package.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/RViennaCL_1.7.1.8.tar.gz" ], "version": "1.7.1.8" } ] }, "r-rzmq": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "libzmq", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/rzmq_0.9.13.tar.gz", "https://cloud.r-project.org/src/contrib/rzmq_0.9.8.tar.gz", "https://cloud.r-project.org/src/contrib/rzmq_0.9.7.tar.gz", "https://cloud.r-project.org/src/contrib/rzmq_0.9.6.tar.gz", "https://cloud.r-project.org/src/contrib/rzmq_0.9.4.tar.gz", "https://cloud.r-project.org/src/contrib/rzmq_0.7.7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=rzmq" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-rzmq", "patches": [], "summary": "R Bindings for 'ZeroMQ'. Interface to the 'ZeroMQ' lightweight messaging\nkernel (see for more information).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/rzmq_0.7.7.tar.gz" ], "version": "0.7.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rzmq_0.9.13.tar.gz" ], "version": "0.9.13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rzmq_0.9.4.tar.gz" ], "version": "0.9.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rzmq_0.9.6.tar.gz" ], "version": "0.9.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rzmq_0.9.7.tar.gz" ], "version": "0.9.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/rzmq_0.9.8.tar.gz" ], "version": "0.9.8" } ] }, "r-s2": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "openssl", "r", "r-rcpp", "r-wk" ], "downloads": [ "https://cloud.r-project.org/src/contrib/s2_1.1.7.tar.gz", "https://cloud.r-project.org/src/contrib/s2_1.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/s2_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/s2_1.0.7.tar.gz", "https://cloud.r-project.org/src/contrib/s2_1.0.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=s2" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "r-s2", "patches": [], "summary": "Spherical Geometry Operators Using the S2 Geometry Library. Provides R\nbindings for Google's s2 library for geometric calculations on the\nsphere. High-performance constructors and exporters provide high\ncompatibility with existing spatial packages, transformers construct new\ngeometries from existing geometries, predicates provide a means to\nselect geometries based on spatial relationships, and accessors extract\ninformation about geometries.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/s2_1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/s2_1.0.7.tar.gz" ], "version": "1.0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/s2_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/s2_1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/s2_1.1.7.tar.gz" ], "version": "1.1.7" } ] }, "r-s4vectors": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-biocgenerics" ], "downloads": [ "https://git.bioconductor.org/packages/S4Vectors" ], "homepages": [ "https://bioconductor.org/packages/S4Vectors" ], "licenses": [], "maintainers": [], "name": "r-s4vectors", "patches": [], "summary": "Foundation of vector-like and list-like containers in Bioconductor. The\nS4Vectors package defines the Vector and List virtual classes and a set\nof generic functions that extend the semantic of ordinary vectors and\nlists in R. Package developers can easily implement vector-like or list-\nlike objects as concrete subclasses of Vector or List. In addition, a\nfew low-level concrete subclasses of general interest (e.g. DataFrame,\nRle, and Hits) are implemented in the S4Vectors package itself (many\nmore are implemented in the IRanges package and in other Bioconductor\ninfrastructure packages).\n", "version": [ { "repositories": [ { "commit": "40af17fe0b8e93b6a72fc787540d2961773b8e23", "type": "git", "url": "https://git.bioconductor.org/packages/S4Vectors" } ], "version": "0.14.7" }, { "repositories": [ { "commit": "00fec03fcbcb7cff37917fab0da28d91fdf9dc3d", "type": "git", "url": "https://git.bioconductor.org/packages/S4Vectors" } ], "version": "0.16.0" }, { "repositories": [ { "commit": "d6804f94ad3663828440914920ac933b934aeff1", "type": "git", "url": "https://git.bioconductor.org/packages/S4Vectors" } ], "version": "0.18.3" }, { "repositories": [ { "commit": "1878b2909086941e556c5ea953c6fd86aebe9b02", "type": "git", "url": "https://git.bioconductor.org/packages/S4Vectors" } ], "version": "0.20.1" }, { "repositories": [ { "commit": "d25e517b48ca4184a4c2ee1f8223c148a55a8b8a", "type": "git", "url": "https://git.bioconductor.org/packages/S4Vectors" } ], "version": "0.22.1" }, { "repositories": [ { "commit": "935769c7e2767230feb47f6f8147e0e2908af4f0", "type": "git", "url": "https://git.bioconductor.org/packages/S4Vectors" } ], "version": "0.26.1" }, { "repositories": [ { "commit": "994cb7ef830e76f8b43169cc72b553869fafb2ed", "type": "git", "url": "https://git.bioconductor.org/packages/S4Vectors" } ], "version": "0.28.1" }, { "repositories": [ { "commit": "ad90e78fd3a4059cfcf2846498fb0748b4394e1a", "type": "git", "url": "https://git.bioconductor.org/packages/S4Vectors" } ], "version": "0.32.3" }, { "repositories": [ { "commit": "f590de3ec4d896a63351d0c1925d3856c0bd5292", "type": "git", "url": "https://git.bioconductor.org/packages/S4Vectors" } ], "version": "0.34.0" }, { "repositories": [ { "commit": "af58701957ffdd9209031dd6a8dee3acdc58e999", "type": "git", "url": "https://git.bioconductor.org/packages/S4Vectors" } ], "version": "0.36.0" }, { "repositories": [ { "commit": "e80c24e1481033741147a0677fb42ce455e7da74", "type": "git", "url": "https://git.bioconductor.org/packages/S4Vectors" } ], "version": "0.38.0" } ] }, "r-samr": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-gsa", "r-impute", "r-matrixstats", "r-openxlsx", "r-shiny", "r-shinyfiles" ], "downloads": [ "https://cloud.r-project.org/src/contrib/samr_3.0.tar.gz", "https://cloud.r-project.org/src/contrib/samr_2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=samr" ], "licenses": [ "LGPL-2.0-or-later" ], "maintainers": [], "name": "r-samr", "patches": [], "summary": "SAM: Significance Analysis of Microarrays. Significance Analysis of\nMicroarrays for differential expression analysis, RNAseq data and\nrelated problems.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/samr_2.0.tar.gz" ], "version": "2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/samr_3.0.tar.gz" ], "version": "3.0" } ] }, "r-sandwich": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-zoo" ], "downloads": [ "https://cloud.r-project.org/src/contrib/sandwich_3.1-0.tar.gz", "https://cloud.r-project.org/src/contrib/sandwich_3.0-2.tar.gz", "https://cloud.r-project.org/src/contrib/sandwich_3.0-1.tar.gz", "https://cloud.r-project.org/src/contrib/sandwich_3.0-0.tar.gz", "https://cloud.r-project.org/src/contrib/sandwich_2.5-1.tar.gz", "https://cloud.r-project.org/src/contrib/sandwich_2.5-0.tar.gz", "https://cloud.r-project.org/src/contrib/sandwich_2.3-4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=sandwich" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-sandwich", "patches": [], "summary": "Robust Covariance Matrix Estimators. Object-oriented software for model-\nrobust covariance matrix estimators. Starting out from the basic robust\nEicker-Huber-White sandwich covariance methods include:\nheteroscedasticity-consistent (HC) covariances for cross-section data;\nheteroscedasticity- and autocorrelation-consistent (HAC) covariances for\ntime series data (such as Andrews' kernel HAC, Newey-West, and WEAVE\nestimators); clustered covariances (one-way and multi-way); panel and\npanel-corrected covariances; outer-product-of-gradients covariances; and\n(clustered) bootstrap covariances. All methods are applicable to\n(generalized) linear model objects fitted by lm() and glm() but can also\nbe adapted to other classes through S3 methods. Details can be found in\nZeileis et al. 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An 'SCSS' compiler, powered\nby the 'LibSass' library. With this, R developers can use variables,\ninheritance, and functions to generate dynamic style sheets. The package\nuses the 'Sass CSS' extension language, which is stable, powerful, and\nCSS compatible.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/sass_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sass_0.4.1.tar.gz" ], "version": "0.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sass_0.4.2.tar.gz" ], "version": "0.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sass_0.4.5.tar.gz" ], "version": "0.4.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sass_0.4.9.tar.gz" ], "version": "0.4.9" } ] }, "r-satellite": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-plyr", "r-raster", "r-rcpp", "r-terra" ], "downloads": [ "https://cloud.r-project.org/src/contrib/satellite_1.0.5.tar.gz", "https://cloud.r-project.org/src/contrib/satellite_1.0.4.tar.gz", "https://cloud.r-project.org/src/contrib/satellite_1.0.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=satellite" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-satellite", "patches": [], "summary": "Handling and Manipulating Remote Sensing Data. Herein, we provide a\nbroad variety of functions which are useful for handling, manipulating,\nand visualizing satellite-based remote sensing data. These operations\nrange from mere data import and layer handling (eg subsetting), over\nRaster* typical data wrangling (eg crop, extend), to more sophisticated\n(pre-)processing tasks typically applied to satellite imagery (eg\natmospheric and topographic correction). This functionality is\ncomplemented by a full access to the satellite layers' metadata at any\nstage and the documentation of performed actions in a separate log file.\nCurrently available sensors include Landsat 4-5 (TM), 7 (ETM+), and 8\n(OLI/TIRS Combined), and additional compatibility is ensured for the\nLandsat Global Land Survey data set.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/satellite_1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/satellite_1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/satellite_1.0.5.tar.gz" ], "version": "1.0.5" } ] }, "r-scaledmatrix": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-delayedarray", "r-matrix", "r-s4vectors" ], "downloads": [ "https://git.bioconductor.org/packages/ScaledMatrix" ], "homepages": [ "https://bioconductor.org/packages/ScaledMatrix" ], "licenses": [], "maintainers": [], "name": "r-scaledmatrix", "patches": [], "summary": "Creating a DelayedMatrix of Scaled and Centered Values. Provides delayed\ncomputation of a matrix of scaled and centered values. The result is\nequivalent to using the scale() function but avoids explicit realization\nof a dense matrix during block processing. 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C-based conversion of large scatterplot\ndata to rasters. Speeds up plotting of data with millions of points.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/scattermore_0.7.tar.gz" ], "version": "0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/scattermore_0.8.tar.gz" ], "version": "0.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/scattermore_1.2.tar.gz" ], "version": "1.2" } ] }, "r-scatterpie": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-dplyr", "r-ggforce", "r-ggfun", "r-ggplot2", "r-rlang", "r-rvcheck", "r-tidyr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/scatterpie_0.2.3.tar.gz", "https://cloud.r-project.org/src/contrib/scatterpie_0.1.9.tar.gz", "https://cloud.r-project.org/src/contrib/scatterpie_0.1.8.tar.gz", "https://cloud.r-project.org/src/contrib/scatterpie_0.1.7.tar.gz", "https://cloud.r-project.org/src/contrib/scatterpie_0.1.5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=scatterpie" ], "licenses": [ "Artistic-2.0" ], "maintainers": [], "name": "r-scatterpie", "patches": [], "summary": "Scatter Pie Plot. Creates scatterpie plots, especially useful for\nplotting pies on a map.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/scatterpie_0.1.5.tar.gz" ], "version": "0.1.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/scatterpie_0.1.7.tar.gz" ], "version": "0.1.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/scatterpie_0.1.8.tar.gz" ], "version": "0.1.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/scatterpie_0.1.9.tar.gz" ], "version": "0.1.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/scatterpie_0.2.3.tar.gz" ], "version": "0.2.3" } ] }, "r-scatterplot3d": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/scatterplot3d_0.3-44.tar.gz", "https://cloud.r-project.org/src/contrib/scatterplot3d_0.3-43.tar.gz", "https://cloud.r-project.org/src/contrib/scatterplot3d_0.3-42.tar.gz", "https://cloud.r-project.org/src/contrib/scatterplot3d_0.3-41.tar.gz", "https://cloud.r-project.org/src/contrib/scatterplot3d_0.3-40.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=scatterplot3d" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-scatterplot3d", "patches": [], "summary": "3D Scatter Plot. Plots a three dimensional (3D) point cloud.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/scatterplot3d_0.3-40.tar.gz" ], "version": "0.3-40" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/scatterplot3d_0.3-41.tar.gz" ], "version": "0.3-41" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/scatterplot3d_0.3-42.tar.gz" ], "version": "0.3-42" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/scatterplot3d_0.3-43.tar.gz" ], "version": "0.3-43" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/scatterplot3d_0.3-44.tar.gz" ], "version": "0.3-44" } ] }, "r-scdblfinder": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-biocgenerics", "r-biocneighbors", "r-biocparallel", "r-biocsingular", "r-bluster", "r-delayedarray", "r-genomeinfodb", "r-genomicranges", "r-igraph", "r-iranges", "r-mass", "r-matrix", "r-rsamtools", "r-rtracklayer", "r-s4vectors", "r-scater", "r-scran", "r-scuttle", "r-singlecellexperiment", "r-summarizedexperiment", "r-xgboost" ], "downloads": [ "https://git.bioconductor.org/packages/scDblFinder" ], "homepages": [ "https://bioconductor.org/packages/scDblFinder" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-scdblfinder", "patches": [], "summary": "The scDblFinder package gathers various methods for the detection and\nhandling of doublets/multiplets in single-cell sequencing data (i.e.\nmultiple cells captured within the same droplet or reaction volume). It\nincludes methods formerly found in the scran package, the new fast and\ncomprehensive scDblFinder method, and a reimplementation of the Amulet\ndetection method for single-cell ATAC-seq.\n", "version": [ { "repositories": [ { "commit": "03512cad0cdfe3cddbef66ec5e330b53661eccfc", "type": "git", "url": "https://git.bioconductor.org/packages/scDblFinder" } ], "version": "1.10.0" }, { "repositories": [ { "commit": "65a88be3a4ca98ccad0a1829a19652df1a3c94fd", "type": "git", "url": "https://git.bioconductor.org/packages/scDblFinder" } ], "version": "1.12.0" }, { "repositories": [ { "commit": "6191ed09b87d7c54809a721d1d6c50c0027cf0a9", "type": "git", "url": "https://git.bioconductor.org/packages/scDblFinder" } ], "version": "1.14.0" } ] }, "r-scran": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-beachmat", "r-bh", "r-biocgenerics", "r-biocparallel", "r-biocsingular", "r-bluster", "r-delayedarray", "r-delayedmatrixstats", "r-dqrng", "r-edger", "r-igraph", "r-limma", "r-matrix", "r-metapod", "r-rcpp", "r-s4vectors", "r-scuttle", "r-singlecellexperiment", "r-statmod", "r-summarizedexperiment" ], "downloads": [ "https://git.bioconductor.org/packages/scran" ], "homepages": [ "https://bioconductor.org/packages/scran" ], "licenses": [], "maintainers": [], "name": "r-scran", "patches": [], "summary": "Methods for Single-Cell RNA-Seq Data Analysis. Implements miscellaneous\nfunctions for interpretation of single-cell RNA-seq data. Methods are\nprovided for assignment of cell cycle phase, detection of highly\nvariable and significantly correlated genes, identification of marker\ngenes, and other common tasks in routine single-cell analysis workflows.\n", "version": [ { "repositories": [ { "commit": "c3f9e169c4538ce827d4f14a4141571c2366cd31", "type": "git", "url": "https://git.bioconductor.org/packages/scran" } ], "version": "1.24.0" }, { "repositories": [ { "commit": "1a83eb7c948b1dc49253080c23b26cefb3a0f3b9", "type": "git", "url": "https://git.bioconductor.org/packages/scran" } ], "version": "1.24.1" }, { "repositories": [ { "commit": "df66576d6958a088c38bd45e1cad9c16cbb52991", "type": "git", "url": "https://git.bioconductor.org/packages/scran" } ], "version": "1.26.0" }, { "repositories": [ { "commit": "2e542b929b231fb5bb8c40af0f6ccea97f79234d", "type": "git", "url": "https://git.bioconductor.org/packages/scran" } ], "version": "1.28.0" } ] }, "r-scrime": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/scrime_1.3.5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=scrime" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-scrime", "patches": [], "summary": "Analysis of High-Dimensional Categorical Data Such as SNP Data. Tools\nfor the analysis of high-dimensional data developed/implemented at the\ngroup \"Statistical Complexity Reduction In Molecular Epidemiology\"\n(SCRIME). Main focus is on SNP data. But most of the functions can also\nbe applied to other types of categorical data.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/scrime_1.3.5.tar.gz" ], "version": "1.3.5" } ] }, "r-scs": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/scs_3.2.4.tar.gz", "https://cloud.r-project.org/src/contrib/scs_3.0-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=scs" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-scs", "patches": [], "summary": "Splitting Conic Solver. Solves convex cone programs via operator\nsplitting. Can solve: linear programs ('LPs'), second-order cone\nprograms ('SOCPs'), semidefinite programs ('SDPs'), exponential cone\nprograms ('ECPs'), and power cone programs ('PCPs'), or problems with\nany combination of those cones. 'SCS' uses 'AMD' (a set of routines for\npermuting sparse matrices prior to factorization) and 'LDL' (a sparse\n'LDL' factorization and solve package) from 'SuiteSparse'\n().\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/scs_3.0-1.tar.gz" ], "version": "3.0-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/scs_3.2.4.tar.gz" ], "version": "3.2.4" } ] }, "r-sctransform": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-dplyr", "r-future", "r-future-apply", "r-ggplot2", "r-gridextra", "r-magrittr", "r-mass", "r-matrix", "r-matrixstats", "r-rcpp", "r-rcpparmadillo", "r-rcppeigen", "r-reshape2", "r-rlang" ], "downloads": [ "https://cloud.r-project.org/src/contrib/sctransform_0.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/sctransform_0.3.5.tar.gz", "https://cloud.r-project.org/src/contrib/sctransform_0.3.3.tar.gz", "https://cloud.r-project.org/src/contrib/sctransform_0.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/sctransform_0.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=sctransform" ], "licenses": [ "GPL-3.0-only OR custom" ], "maintainers": [], "name": "r-sctransform", "patches": [], "summary": "Variance Stabilizing Transformations for Single Cell UMI Data. A\nnormalization method for single-cell UMI count data using a variance\nstabilizing transformation. The transformation is based on a negative\nbinomial regression model with regularized parameters. As part of the\nsame regression framework, this package also provides functions for\nbatch correction, and data correction. See Hafemeister and Satija 2019\n for more details.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/sctransform_0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sctransform_0.3.2.tar.gz" ], "version": "0.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sctransform_0.3.3.tar.gz" ], "version": "0.3.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sctransform_0.3.5.tar.gz" ], "version": "0.3.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sctransform_0.4.1.tar.gz" ], "version": "0.4.1" } ] }, "r-scuttle": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-beachmat", "r-biocgenerics", "r-biocparallel", "r-delayedarray", "r-delayedmatrixstats", "r-genomicranges", "r-matrix", "r-rcpp", "r-s4vectors", "r-singlecellexperiment", "r-summarizedexperiment" ], "downloads": [ "https://git.bioconductor.org/packages/scuttle" ], "homepages": [ "https://bioconductor.org/packages/scuttle" ], "licenses": [], "maintainers": [], "name": "r-scuttle", "patches": [], "summary": "Single-Cell RNA-Seq Analysis Utilities. Provides basic utility functions\nfor performing single-cell analyses, focusing on simple normalization,\nquality control and data transformations. Also provides some helper\nfunctions to assist development of other packages.\n", "version": [ { "repositories": [ { "commit": "a827e2759d80e6c3510e2f8fd4bd680274206d9f", "type": "git", "url": "https://git.bioconductor.org/packages/scuttle" } ], "version": "1.0.4" }, { "repositories": [ { "commit": "02e864cb80414f71bb312cdf6d68e0036326e10b", "type": "git", "url": "https://git.bioconductor.org/packages/scuttle" } ], "version": "1.10.0" }, { "repositories": [ { "commit": "b335263dd56bb859b5dd3ea27ee00dffa0215313", "type": "git", "url": "https://git.bioconductor.org/packages/scuttle" } ], "version": "1.4.0" }, { "repositories": [ { "commit": "afdfc555151d84cc332757b4ec0b97cb7f39d2d5", "type": "git", "url": "https://git.bioconductor.org/packages/scuttle" } ], "version": "1.6.2" }, { "repositories": [ { "commit": "df23680da9fa4d685df77e4561467f491c850b50", "type": "git", "url": "https://git.bioconductor.org/packages/scuttle" } ], "version": "1.6.3" }, { "repositories": [ { "commit": "dabf6b95e478d599557ebbed03edd44031fd6b78", "type": "git", "url": "https://git.bioconductor.org/packages/scuttle" } ], "version": "1.8.0" } ] }, "r-sdmtools": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-r-utils" ], "downloads": [ "https://cloud.r-project.org/src/contrib/SDMTools_1.1-221.2.tar.gz", "https://cloud.r-project.org/src/contrib/SDMTools_1.1-221.1.tar.gz", "https://cloud.r-project.org/src/contrib/SDMTools_1.1-221.tar.gz", "https://cloud.r-project.org/src/contrib/SDMTools_1.1-20.tar.gz", "https://cloud.r-project.org/src/contrib/SDMTools_1.1-13.tar.gz", "https://cloud.r-project.org/src/contrib/SDMTools_1.1-12.tar.gz", "https://cloud.r-project.org/src/contrib/SDMTools_1.1-11.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=SDMTools" ], "licenses": [], "maintainers": [], "name": "r-sdmtools", "patches": [], "summary": "Species Distribution Modelling Tools: Tools for processing data\nassociated with species distribution modelling exercises. This packages\nprovides a set of tools for post processing the outcomes of species\ndistribution modeling exercises. It includes novel methods for comparing\nmodels and tracking changes in distributions through time. It further\nincludes methods for visualizing outcomes, selecting thresholds,\ncalculating measures of accuracy and landscape fragmentation statistics,\netc.. This package was made possible in part by financial support from\nthe Australian Research Council & ARC Research Network for Earth System\nScience.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/SDMTools_1.1-11.tar.gz" ], "version": "1.1-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SDMTools_1.1-12.tar.gz" ], "version": "1.1-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SDMTools_1.1-13.tar.gz" ], "version": "1.1-13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SDMTools_1.1-20.tar.gz" ], "version": "1.1-20" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SDMTools_1.1-221.tar.gz" ], "version": "1.1-221" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SDMTools_1.1-221.1.tar.gz" ], "version": "1.1-221.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SDMTools_1.1-221.2.tar.gz" ], "version": "1.1-221.2" } ] }, "r-segmented": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-mass", "r-nlme" ], "downloads": [ "https://cloud.r-project.org/src/contrib/segmented_2.1-1.tar.gz", "https://cloud.r-project.org/src/contrib/segmented_1.6-4.tar.gz", "https://cloud.r-project.org/src/contrib/segmented_1.6-1.tar.gz", "https://cloud.r-project.org/src/contrib/segmented_1.6-0.tar.gz", "https://cloud.r-project.org/src/contrib/segmented_1.4-0.tar.gz", "https://cloud.r-project.org/src/contrib/segmented_1.3-4.tar.gz", "https://cloud.r-project.org/src/contrib/segmented_1.3-1.tar.gz", "https://cloud.r-project.org/src/contrib/segmented_1.0-0.tar.gz", "https://cloud.r-project.org/src/contrib/segmented_0.5-4.0.tar.gz", "https://cloud.r-project.org/src/contrib/segmented_0.5-2.2.tar.gz", "https://cloud.r-project.org/src/contrib/segmented_0.5-1.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=segmented" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-segmented", "patches": [], "summary": "Regression Models with Break-Points / Change-Points Estimation. Given a\nregression model, segmented 'updates' it by adding one or more segmented\n(i.e., piece-wise linear) relationships. Several variables with multiple\nbreakpoints are allowed. The estimation method is discussed in Muggeo\n(2003, ) and illustrated in Muggeo (2008,\n). An approach for\nhypothesis testing is presented in Muggeo (2016,\n), and interval estimation for the\nbreakpoint is discussed in Muggeo (2017, ).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/segmented_0.5-1.4.tar.gz" ], "version": "0.5-1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/segmented_0.5-2.2.tar.gz" ], "version": "0.5-2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/segmented_0.5-4.0.tar.gz" ], "version": "0.5-4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/segmented_1.0-0.tar.gz" ], "version": "1.0-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/segmented_1.3-1.tar.gz" ], "version": "1.3-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/segmented_1.3-4.tar.gz" ], "version": "1.3-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/segmented_1.4-0.tar.gz" ], "version": "1.4-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/segmented_1.6-0.tar.gz" ], "version": "1.6-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/segmented_1.6-1.tar.gz" ], "version": "1.6-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/segmented_1.6-4.tar.gz" ], "version": "1.6-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/segmented_2.1-1.tar.gz" ], "version": "2.1-1" } ] }, "r-selectr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-r6", "r-stringr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/selectr_0.4-2.tar.gz", "https://cloud.r-project.org/src/contrib/selectr_0.4-1.tar.gz", "https://cloud.r-project.org/src/contrib/selectr_0.4-0.tar.gz", "https://cloud.r-project.org/src/contrib/selectr_0.3-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=selectr" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "r-selectr", "patches": [], "summary": "Translate CSS Selectors to XPath Expressions. Translates a CSS3 selector\ninto an equivalent XPath expression. This allows us to use CSS selectors\nwhen working with the XML package as it can only evaluate XPath\nexpressions. Also provided are convenience functions useful for using\nCSS selectors on XML nodes. This package is a port of the Python package\n'cssselect' ().\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/selectr_0.3-1.tar.gz" ], "version": "0.3-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/selectr_0.4-0.tar.gz" ], "version": "0.4-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/selectr_0.4-1.tar.gz" ], "version": "0.4-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/selectr_0.4-2.tar.gz" ], "version": "0.4-2" } ] }, "r-seqinr": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-ade4", "r-segmented", "zlib-api" ], "downloads": [ "https://cloud.r-project.org/src/contrib/seqinr_4.2-36.tar.gz", "https://cloud.r-project.org/src/contrib/seqinr_4.2-30.tar.gz", "https://cloud.r-project.org/src/contrib/seqinr_4.2-16.tar.gz", "https://cloud.r-project.org/src/contrib/seqinr_4.2-8.tar.gz", "https://cloud.r-project.org/src/contrib/seqinr_4.2-5.tar.gz", "https://cloud.r-project.org/src/contrib/seqinr_3.4-5.tar.gz", "https://cloud.r-project.org/src/contrib/seqinr_3.3-6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=seqinr" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-seqinr", "patches": [], "summary": "Biological Sequences Retrieval and Analysis. Exploratory data analysis\nand data visualization for biological sequence (DNA and protein) data.\nSeqinr includes utilities for sequence data management under the ACNUC\nsystem described in Gouy, M. et al. 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See Satija R, Farrell J, Gennert D, et al (2015)\n, Macosko E, Basu A, Satija R, et al (2015)\n, and Stuart T, Butler A, et al (2019)\n for more details.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/Seurat_2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Seurat_2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Seurat_3.0.1.tar.gz" ], "version": "3.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Seurat_3.0.2.tar.gz" ], "version": "3.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Seurat_3.1.0.tar.gz" ], "version": "3.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Seurat_3.2.3.tar.gz" ], "version": "3.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Seurat_4.1.0.tar.gz" ], "version": "4.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Seurat_4.1.1.tar.gz" ], "version": "4.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Seurat_4.2.0.tar.gz" ], "version": "4.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Seurat_4.2.1.tar.gz" ], "version": "4.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Seurat_4.3.0.tar.gz" ], "version": "4.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/Seurat_5.1.0.tar.gz" ], "version": "5.1.0" } ] }, "r-seuratobject": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-future", "r-future-apply", "r-generics", "r-lifecycle", "r-matrix", "r-progressr", "r-rcpp", "r-rcppeigen", "r-rgeos", "r-rlang", "r-sp", "r-spam" ], "downloads": [ "https://cloud.r-project.org/src/contrib/SeuratObject_5.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/SeuratObject_4.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/SeuratObject_4.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/SeuratObject_4.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/SeuratObject_4.0.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=SeuratObject" ], "licenses": [], "maintainers": [], "name": "r-seuratobject", "patches": [], "summary": "Data Structures for Single Cell Data. 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See Satija R, Farrell J,\nGennert D, et al (2015) , Macosko E, Basu A,\nSatija R, et al (2015) , and Stuart T,\nButler A, et al (2019) for more\ndetails.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/SeuratObject_4.0.4.tar.gz" ], "version": "4.0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SeuratObject_4.1.0.tar.gz" ], "version": "4.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SeuratObject_4.1.2.tar.gz" ], "version": "4.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SeuratObject_4.1.3.tar.gz" ], "version": "4.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SeuratObject_5.0.2.tar.gz" ], "version": "5.0.2" } ] }, "r-sf": { "alias": [], "categories": [], "dependencies": [ "cxx", "gdal", "geos", "gmake", "proj", "r", "r-classint", "r-dbi", "r-magrittr", "r-rcpp", "r-s2", "r-units", "sqlite" ], "downloads": [ "https://cloud.r-project.org/src/contrib/sf_1.0-16.tar.gz", "https://cloud.r-project.org/src/contrib/sf_1.0-12.tar.gz", "https://cloud.r-project.org/src/contrib/sf_1.0-9.tar.gz", "https://cloud.r-project.org/src/contrib/sf_1.0-8.tar.gz", "https://cloud.r-project.org/src/contrib/sf_1.0-7.tar.gz", "https://cloud.r-project.org/src/contrib/sf_1.0-5.tar.gz", "https://cloud.r-project.org/src/contrib/sf_0.9-7.tar.gz", "https://cloud.r-project.org/src/contrib/sf_0.7-7.tar.gz", "https://cloud.r-project.org/src/contrib/sf_0.7-5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=sf" ], "licenses": [ "GPL-2.0-only OR MIT" ], "maintainers": [], "name": "r-sf", "patches": [], "summary": "Simple Features for R. Support for simple features, a standardized way\nto encode spatial vector data. Binds to 'GDAL' for reading and writing\ndata, to 'GEOS' for geometrical operations, and to 'PROJ' for projection\nconversions and datum transformations. Optionally uses the 's2' package\nfor spherical geometry operations on geographic coordinates.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/sf_0.7-5.tar.gz" ], "version": "0.7-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sf_0.7-7.tar.gz" ], "version": "0.7-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sf_0.9-7.tar.gz" ], "version": "0.9-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sf_1.0-12.tar.gz" ], "version": "1.0-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sf_1.0-16.tar.gz" ], "version": "1.0-16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sf_1.0-5.tar.gz" ], "version": "1.0-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sf_1.0-7.tar.gz" ], "version": "1.0-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sf_1.0-8.tar.gz" ], "version": "1.0-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sf_1.0-9.tar.gz" ], "version": "1.0-9" } ] }, "r-sfheaders": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-geometries", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/sfheaders_0.4.4.tar.gz", "https://cloud.r-project.org/src/contrib/sfheaders_0.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/sfheaders_0.4.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=sfheaders" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-sfheaders", "patches": [], "summary": "Converts Between R Objects and Simple Feature Objects. Converts between\nR and Simple Feature 'sf' objects, without depending on the Simple\nFeature library. Conversion functions are available at both the R level,\nand through 'Rcpp'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/sfheaders_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sfheaders_0.4.2.tar.gz" ], "version": "0.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sfheaders_0.4.4.tar.gz" ], "version": "0.4.4" } ] }, "r-sfsmisc": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/sfsmisc_1.1-19.tar.gz", "https://cloud.r-project.org/src/contrib/sfsmisc_1.1-15.tar.gz", "https://cloud.r-project.org/src/contrib/sfsmisc_1.1-13.tar.gz", "https://cloud.r-project.org/src/contrib/sfsmisc_1.1-12.tar.gz", "https://cloud.r-project.org/src/contrib/sfsmisc_1.1-8.tar.gz", "https://cloud.r-project.org/src/contrib/sfsmisc_1.1-4.tar.gz", "https://cloud.r-project.org/src/contrib/sfsmisc_1.1-3.tar.gz", "https://cloud.r-project.org/src/contrib/sfsmisc_1.1-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=sfsmisc" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-sfsmisc", "patches": [], "summary": "Utilities from 'Seminar fuer Statistik' ETH Zurich. Useful utilities\n['goodies'] from Seminar fuer Statistik ETH Zurich, some of which were\nported from S-plus in the 1990s.; For graphics, have pretty (Log-scale)\naxes, an enhanced Tukey-Anscombe plot, combining histogram and boxplot,\n2d-residual plots, a 'tachoPlot()', pretty arrows, etc.; For robustness,\nhave a robust F test and robust range().; For system support, notably on\nLinux, provides 'Sys.*()' functions with more access to system and CPU\ninformation.; Finally, miscellaneous utilities such as simple efficient\nprime numbers, integer codes, Duplicated(), toLatex.numeric() and\nis.whole().\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/sfsmisc_1.1-0.tar.gz" ], "version": "1.1-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sfsmisc_1.1-12.tar.gz" ], "version": "1.1-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sfsmisc_1.1-13.tar.gz" ], "version": "1.1-13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sfsmisc_1.1-15.tar.gz" ], "version": "1.1-15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sfsmisc_1.1-19.tar.gz" ], "version": "1.1-19" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sfsmisc_1.1-3.tar.gz" ], "version": "1.1-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sfsmisc_1.1-4.tar.gz" ], "version": "1.1-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sfsmisc_1.1-8.tar.gz" ], "version": "1.1-8" } ] }, "r-sftime": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-sf" ], "downloads": [ "https://cloud.r-project.org/src/contrib/sftime_0.2-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=sftime" ], "licenses": [], "maintainers": [], "name": "r-sftime", "patches": [], "summary": "Classes and Methods for Simple Feature Objects that Have a Time Column.\nClasses and methods for spatial objects that have a registered time\ncolumn, in particular for irregular spatiotemporal data. The time column\ncan be of any type, but needs to be ordinal. Regularly laid out\nspatiotemporal data (vector or raster data cubes) are handled by package\n'stars'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/sftime_0.2-0.tar.gz" ], "version": "0.2-0" } ] }, "r-shadowtext": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ggplot2", "r-scales" ], "downloads": [ "https://cloud.r-project.org/src/contrib/shadowtext_0.1.4.tar.gz", "https://cloud.r-project.org/src/contrib/shadowtext_0.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/shadowtext_0.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/shadowtext_0.0.7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=shadowtext" ], "licenses": [ "Artistic-2.0" ], "maintainers": [], "name": "r-shadowtext", "patches": [], "summary": "Shadow Text Grob and Layer. Implement shadowtextGrob() for 'grid' and\ngeom_shadowtext() layer for 'ggplot2'. These functions create/draw text\ngrob with background shadow.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/shadowtext_0.0.7.tar.gz" ], "version": "0.0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shadowtext_0.1.1.tar.gz" ], "version": "0.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shadowtext_0.1.2.tar.gz" ], "version": "0.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shadowtext_0.1.4.tar.gz" ], "version": "0.1.4" } ] }, "r-shape": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/shape_1.4.6.1.tar.gz", "https://cloud.r-project.org/src/contrib/shape_1.4.6.tar.gz", "https://cloud.r-project.org/src/contrib/shape_1.4.5.tar.gz", "https://cloud.r-project.org/src/contrib/shape_1.4.4.tar.gz", "https://cloud.r-project.org/src/contrib/shape_1.4.3.tar.gz", "https://cloud.r-project.org/src/contrib/shape_1.4.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=shape" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-shape", "patches": [], "summary": "Functions for Plotting Graphical Shapes, Colors. Functions for plotting\ngraphical shapes such as ellipses, circles, cylinders, arrows, ...\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/shape_1.4.2.tar.gz" ], "version": "1.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shape_1.4.3.tar.gz" ], "version": "1.4.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shape_1.4.4.tar.gz" ], "version": "1.4.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shape_1.4.5.tar.gz" ], "version": "1.4.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shape_1.4.6.tar.gz" ], "version": "1.4.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shape_1.4.6.1.tar.gz" ], "version": "1.4.6.1" } ] }, "r-shiny": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-bslib", "r-cachem", "r-commonmark", "r-crayon", "r-digest", "r-ellipsis", "r-fastmap", "r-fontawesome", "r-glue", "r-htmltools", "r-httpuv", "r-jsonlite", "r-later", "r-lifecycle", "r-mime", "r-promises", "r-r6", "r-rlang", "r-sourcetools", "r-withr", "r-xtable" ], "downloads": [ "https://cloud.r-project.org/src/contrib/shiny_1.9.1.tar.gz", "https://cloud.r-project.org/src/contrib/shiny_1.8.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/shiny_1.7.4.tar.gz", "https://cloud.r-project.org/src/contrib/shiny_1.7.3.tar.gz", "https://cloud.r-project.org/src/contrib/shiny_1.7.2.tar.gz", "https://cloud.r-project.org/src/contrib/shiny_1.7.1.tar.gz", "https://cloud.r-project.org/src/contrib/shiny_1.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/shiny_1.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/shiny_1.0.5.tar.gz", "https://cloud.r-project.org/src/contrib/shiny_0.13.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=shiny" ], "licenses": [ "GPL-3.0-only OR custom" ], "maintainers": [], "name": "r-shiny", "patches": [], "summary": "Web Application Framework for R. Makes it incredibly easy to build\ninteractive web applications with R. Automatic \"reactive\" binding\nbetween inputs and outputs and extensive pre-built widgets make it\npossible to build beautiful, responsive, and powerful applications with\nminimal effort.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/shiny_0.13.2.tar.gz" ], "version": "0.13.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shiny_1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shiny_1.3.2.tar.gz" ], "version": "1.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shiny_1.5.0.tar.gz" ], "version": "1.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shiny_1.7.1.tar.gz" ], "version": "1.7.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shiny_1.7.2.tar.gz" ], "version": "1.7.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shiny_1.7.3.tar.gz" ], "version": "1.7.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shiny_1.7.4.tar.gz" ], "version": "1.7.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shiny_1.8.1.1.tar.gz" ], "version": "1.8.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shiny_1.9.1.tar.gz" ], "version": "1.9.1" } ] }, "r-shinydashboard": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-htmltools", "r-promises", "r-shiny" ], "downloads": [ "https://cloud.r-project.org/src/contrib/shinydashboard_0.7.2.tar.gz", "https://cloud.r-project.org/src/contrib/shinydashboard_0.7.1.tar.gz", "https://cloud.r-project.org/src/contrib/shinydashboard_0.7.0.tar.gz", "https://cloud.r-project.org/src/contrib/shinydashboard_0.6.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=shinydashboard" ], "licenses": [ "GPL-2.0-or-later OR custom" ], "maintainers": [], "name": "r-shinydashboard", "patches": [], "summary": "Create Dashboards with 'Shiny'. Create dashboards with 'Shiny'. This\npackage provides a theme on top of 'Shiny', making it easy to create\nattractive dashboards.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/shinydashboard_0.6.1.tar.gz" ], "version": "0.6.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shinydashboard_0.7.0.tar.gz" ], "version": "0.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shinydashboard_0.7.1.tar.gz" ], "version": "0.7.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shinydashboard_0.7.2.tar.gz" ], "version": "0.7.2" } ] }, "r-shinyfiles": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-fs", "r-htmltools", "r-jsonlite", "r-shiny", "r-tibble" ], "downloads": [ "https://cloud.r-project.org/src/contrib/shinyFiles_0.9.3.tar.gz", "https://cloud.r-project.org/src/contrib/shinyFiles_0.9.2.tar.gz", "https://cloud.r-project.org/src/contrib/shinyFiles_0.9.1.tar.gz", "https://cloud.r-project.org/src/contrib/shinyFiles_0.9.0.tar.gz", "https://cloud.r-project.org/src/contrib/shinyFiles_0.7.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=shinyFiles" ], "licenses": [], "maintainers": [], "name": "r-shinyfiles", "patches": [], "summary": "A Server-Side File System Viewer for Shiny. Provides functionality for\nclient-side navigation of the server side file system in shiny apps. In\ncase the app is running locally this gives the user direct access to the\nfile system without the need to \"download\" files to a temporary\nlocation. Both file and folder selection as well as file saving is\navailable.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/shinyFiles_0.7.3.tar.gz" ], "version": "0.7.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shinyFiles_0.9.0.tar.gz" ], "version": "0.9.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shinyFiles_0.9.1.tar.gz" ], "version": "0.9.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shinyFiles_0.9.2.tar.gz" ], "version": "0.9.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shinyFiles_0.9.3.tar.gz" ], "version": "0.9.3" } ] }, "r-shinyjs": { "alias": [], "categories": [], "dependencies": [ "gmake", "pandoc", "r", "r-digest", "r-htmltools", "r-jsonlite", "r-shiny" ], "downloads": [ "https://cloud.r-project.org/src/contrib/shinyjs_2.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/shinyjs_2.0.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=shinyjs" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-shinyjs", "patches": [], "summary": "Easily Improve the User Experience of Your Shiny Apps in Seconds.\nPerform common useful JavaScript operations in Shiny apps that will\ngreatly improve your apps without having to know any JavaScript.\nExamples include: hiding an element, disabling an input, resetting an\ninput back to its original value, delaying code execution by a few\nseconds, and many more useful functions for both the end user and the\ndeveloper. 'shinyjs' can also be used to easily call your own custom\nJavaScript functions from R.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/shinyjs_2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shinyjs_2.1.0.tar.gz" ], "version": "2.1.0" } ] }, "r-shinystan": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-bayesplot", "r-colourpicker", "r-dt", "r-dygraphs", "r-ggplot2", "r-gridextra", "r-gtools", "r-markdown", "r-reshape2", "r-rsconnect", "r-rstan", "r-shiny", "r-shinyjs", "r-shinythemes", "r-threejs", "r-xtable", "r-xts" ], "downloads": [ "https://cloud.r-project.org/src/contrib/shinystan_2.6.0.tar.gz", "https://cloud.r-project.org/src/contrib/shinystan_2.5.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=shinystan" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-shinystan", "patches": [], "summary": "Interactive Visual and Numerical Diagnostics and Posterior Analysis for\nBayesian Models. A graphical user interface for interactive Markov chain\nMonte Carlo (MCMC) diagnostics and plots and tables helpful for\nanalyzing a posterior sample. The interface is powered by the 'Shiny'\nweb application framework from 'RStudio' and works with the output of\nMCMC programs written in any programming language (and has extended\nfunctionality for 'Stan' models fit using the 'rstan' and 'rstanarm'\npackages).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/shinystan_2.5.0.tar.gz" ], "version": "2.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/shinystan_2.6.0.tar.gz" ], "version": "2.6.0" } ] }, "r-shinythemes": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-shiny" ], "downloads": [ "https://cloud.r-project.org/src/contrib/shinythemes_1.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=shinythemes" ], "licenses": [ "GPL-3.0-only OR custom" ], "maintainers": [], "name": "r-shinythemes", "patches": [], "summary": "Themes for Shiny. Themes for use with Shiny. Includes several Bootstrap\nthemes from , which are packaged for use with\nShiny applications.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/shinythemes_1.2.0.tar.gz" ], "version": "1.2.0" } ] }, "r-shortread": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-biobase", "r-biocgenerics", "r-biocparallel", "r-biostrings", "r-genomeinfodb", "r-genomicalignments", "r-genomicranges", "r-hwriter", "r-iranges", "r-lattice", "r-latticeextra", "r-rhtslib", "r-rsamtools", "r-s4vectors", "r-xvector", "r-zlibbioc", "zlib-api" ], "downloads": [ "https://git.bioconductor.org/packages/ShortRead" ], "homepages": [ "https://bioconductor.org/packages/ShortRead" ], "licenses": [], "maintainers": [], "name": "r-shortread", "patches": [], "summary": "FASTQ input and manipulation. This package implements sampling,\niteration, and input of FASTQ files. The package includes functions for\nfiltering and trimming reads, and for generating a quality assessment\nreport. Data are represented as DNAStringSet-derived objects, and easily\nmanipulated for a diversity of purposes. 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A framework for the analysis and\nexploration of single-cell chromatin data. The 'Signac' package contains\nfunctions for quantifying single-cell chromatin data, computing per-cell\nquality control metrics, dimension reduction and normalization,\nvisualization, and DNA sequence motif analysis. 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Provides high level\nfunctions for reading Affy .CEL files, phenotypic data, and then\ncomputing simple things with it, such as t-tests, fold changes and the\nlike. Makes heavy use of the affy library. 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Defines a S4 class for storing data\nfrom single-cell experiments. This includes specialized methods to store\nand retrieve spike-in information, dimensionality reduction coordinates\nand size factors for each cell, along with the usual metadata for genes\nand libraries.\n", "version": [ { "repositories": [ { "commit": "545e974aa7ca7855e039bf9e3030290cd71d9031", "type": "git", "url": "https://git.bioconductor.org/packages/SingleCellExperiment" } ], "version": "1.0.0" }, { "repositories": [ { "commit": "66063b74c8b0bd0fd1277c7ad425ad11823ab356", "type": "git", "url": "https://git.bioconductor.org/packages/SingleCellExperiment" } ], "version": "1.12.0" }, { "repositories": [ { "commit": "bb27609ba08052607fc08529ffbbbcf1eab265cb", "type": "git", "url": "https://git.bioconductor.org/packages/SingleCellExperiment" } ], "version": "1.16.0" }, { "repositories": [ { "commit": "3a72dcd97e628055b2d02294eaecca9a41aba604", "type": "git", "url": "https://git.bioconductor.org/packages/SingleCellExperiment" } ], "version": "1.18.0" }, { "repositories": [ { "commit": "db7768a7cb5eca724bcf7e4cea3234992ac714a1", "type": "git", "url": "https://git.bioconductor.org/packages/SingleCellExperiment" } ], "version": "1.18.1" }, { "repositories": [ { "commit": "fe512259da79e0c660b322b5387e9bb16f2e6321", "type": "git", "url": "https://git.bioconductor.org/packages/SingleCellExperiment" } ], "version": "1.2.0" }, { "repositories": [ { "commit": "467f02c0346e3ca5ec8825a6faa80a90d20fcd29", "type": "git", "url": "https://git.bioconductor.org/packages/SingleCellExperiment" } ], "version": "1.20.0" }, { "repositories": [ { "commit": "d477e8ef442dec60576e08bb660081b8bccc978c", "type": "git", "url": "https://git.bioconductor.org/packages/SingleCellExperiment" } ], "version": "1.22.0" }, { "repositories": [ { "commit": "b1efcb338e9176ae6829bb897957aa37e74d4870", "type": "git", "url": "https://git.bioconductor.org/packages/SingleCellExperiment" } ], "version": "1.4.1" }, { "repositories": [ { "commit": "baa51d77a8dacd2a22e7293095a8cffaaa3293b4", "type": "git", "url": "https://git.bioconductor.org/packages/SingleCellExperiment" } ], "version": "1.6.0" } ] }, "r-sitmo": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/sitmo_2.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/sitmo_2.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=sitmo" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-sitmo", "patches": [], "summary": "Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files.\nProvided within are two high quality and fast PPRNGs that may be used in\nan 'OpenMP' parallel environment. In addition, there is a generator for\none dimensional low-discrepancy sequence. The objective of this library\nto consolidate the distribution of the 'sitmo' (C++98 & C++11),\n'threefry' and 'vandercorput' (C++11-only) engines on CRAN by enabling\nothers to link to the header files inside of 'sitmo' instead of\nincluding a copy of each engine within their individual package. Lastly,\nthe package contains example implementations using the 'sitmo' package\nand three accompanying vignette that provide additional information.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/sitmo_2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sitmo_2.0.2.tar.gz" ], "version": "2.0.2" } ] }, "r-sm": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/sm_2.2-6.0.tar.gz", "https://cloud.r-project.org/src/contrib/sm_2.2-5.7.1.tar.gz", "https://cloud.r-project.org/src/contrib/sm_2.2-5.7.tar.gz", "https://cloud.r-project.org/src/contrib/sm_2.2-5.6.tar.gz", "https://cloud.r-project.org/src/contrib/sm_2.2-5.5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=sm" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-sm", "patches": [], "summary": "Smoothing Methods for Nonparametric Regression and Density Estimation.\nThis is software linked to the book 'Applied Smoothing Techniques for\nData Analysis - The Kernel Approach with S-Plus Illustrations' Oxford\nUniversity Press.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/sm_2.2-5.5.tar.gz" ], "version": "2.2-5.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sm_2.2-5.6.tar.gz" ], "version": "2.2-5.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sm_2.2-5.7.tar.gz" ], "version": "2.2-5.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sm_2.2-5.7.1.tar.gz" ], "version": "2.2-5.7.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sm_2.2-6.0.tar.gz" ], "version": "2.2-6.0" } ] }, "r-smoof": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-bbmisc", "r-checkmate", "r-ggplot2", "r-mco", "r-paramhelpers", "r-plot3d", "r-plotly", "r-rcolorbrewer", "r-rcpp", "r-rcpparmadillo", "r-rjsonio" ], "downloads": [ "https://cloud.r-project.org/src/contrib/smoof_1.6.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/smoof_1.6.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/smoof_1.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/smoof_1.5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=smoof" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "r-smoof", "patches": [], "summary": "Single and Multi-Objective Optimization Test Functions. Provides\ngenerators for a high number of both single- and multi- objective test\nfunctions which are frequently used for the benchmarking of (numerical)\noptimization algorithms. 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Build and\nmanipulate probability distributions of the skew-normal family and some\nrelated ones, notably the skew-t family, and provide related statistical\nmethods for data fitting and diagnostics, in the univariate and the\nmultivariate case.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/sn_1.2-3.tar.gz" ], "version": "1.2-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sn_1.2-4.tar.gz" ], "version": "1.2-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sn_1.3-0.tar.gz" ], "version": "1.3-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sn_1.4-0.tar.gz" ], "version": "1.4-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sn_1.5-0.tar.gz" ], "version": "1.5-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sn_1.5-3.tar.gz" ], "version": "1.5-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sn_1.5-4.tar.gz" ], "version": "1.5-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sn_1.6-2.tar.gz" ], "version": "1.6-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sn_2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sn_2.0.2.tar.gz" ], "version": "2.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sn_2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sn_2.1.1.tar.gz" ], "version": "2.1.1" } ] }, "r-snakecase": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-stringi", "r-stringr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/snakecase_0.11.1.tar.gz", "https://cloud.r-project.org/src/contrib/snakecase_0.11.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=snakecase" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-snakecase", "patches": [], "summary": "Convert Strings into any Case. A consistent, flexible and easy to use\ntool to parse and convert strings into cases like snake or camel among\nothers.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/snakecase_0.11.0.tar.gz" ], "version": "0.11.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/snakecase_0.11.1.tar.gz" ], "version": "0.11.1" } ] }, "r-snow": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/snow_0.4-4.tar.gz", "https://cloud.r-project.org/src/contrib/snow_0.4-3.tar.gz", "https://cloud.r-project.org/src/contrib/snow_0.4-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=snow" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-snow", "patches": [], "summary": "Simple Network of Workstations. Support for simple parallel computing in\nR.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/snow_0.4-2.tar.gz" ], "version": "0.4-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/snow_0.4-3.tar.gz" ], "version": "0.4-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/snow_0.4-4.tar.gz" ], "version": "0.4-4" } ] }, "r-snowfall": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-snow" ], "downloads": [ "https://cloud.r-project.org/src/contrib/snowfall_1.84-6.3.tar.gz", "https://cloud.r-project.org/src/contrib/snowfall_1.84-6.2.tar.gz", "https://cloud.r-project.org/src/contrib/snowfall_1.84-6.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=snowfall" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-snowfall", "patches": [], "summary": "Easier cluster computing (based on snow). Usability wrapper around snow\nfor easier development of parallel R programs. This package offers e.g.\nextended error checks, and additional functions. All functions work in\nsequential mode, too, if no cluster is present or wished. 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Classes and methods for spatial\ndata; the classes document where the spatial location information\nresides, for 2D or 3D data. 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These include raster-based, event-\nbased, and agent-based models. The core simulation components (provided\nby 'SpaDES.core') are built upon a discrete event simulation (DES; see\nMatloff (2011) ch 7.8.3 ) framework\nthat facilitates modularity, and easily enables the user to include\nadditional functionality by running user-built simulation modules (see\nalso 'SpaDES.tools'). Included are numerous tools to visualize rasters\nand other maps (via 'quickPlot'), and caching methods for reproducible\nsimulations (via 'reproducible'). Tools for running simulation\nexperiments are provided by 'SpaDES.experiment'. Additional\nfunctionality is provided by the 'SpaDES.addins' and 'SpaDES.shiny'\npackages.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES_2.0.11.tar.gz" ], "version": "2.0.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES_2.0.6.tar.gz" ], "version": "2.0.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES_2.0.7.tar.gz" ], "version": "2.0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES_2.0.8.tar.gz" ], "version": "2.0.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES_2.0.9.tar.gz" ], "version": "2.0.9" } ] }, "r-spades-addins": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-devtools", "r-magrittr", "r-miniui", "r-reproducible", "r-rstudioapi", "r-shiny", "r-spades-core", "r-stringi" ], "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES.addins_0.1.4.tar.gz", "https://cloud.r-project.org/src/contrib/SpaDES.addins_0.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/SpaDES.addins_0.1.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=SpaDES.addins" ], "licenses": [], "maintainers": [ "dorton21" ], "name": "r-spades-addins", "patches": [], "summary": "Development Tools for 'SpaDES' and 'SpaDES' Modules. 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See\n'?SpaDES.addins' for an overview of the tools provided.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES.addins_0.1.2.tar.gz" ], "version": "0.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES.addins_0.1.3.tar.gz" ], "version": "0.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES.addins_0.1.4.tar.gz" ], "version": "0.1.4" } ] }, "r-spades-core": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-crayon", "r-data-table", "r-fastdigest", "r-fs", "r-igraph", "r-lobstr", "r-qs", "r-quickplot", "r-raster", "r-reproducible", "r-require", "r-terra", "r-whisker" ], "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES.core_2.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/SpaDES.core_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/SpaDES.core_1.0.10.tar.gz", "https://cloud.r-project.org/src/contrib/SpaDES.core_1.0.9.tar.gz", "https://cloud.r-project.org/src/contrib/SpaDES.core_1.0.5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=SpaDES.core" ], "licenses": [], "maintainers": [ "dorton21" ], "name": "r-spades-core", "patches": [], "summary": "Utilities for Developing and Running Spatially Explicit Discrete Event\nModels. Provides the core framework for a discrete event system (DES) to\nimplement acomplete data-to-decisions, reproducible workflow. The core\nDES components facilitate modularity, and easily enable the user to\ninclude additional functionality by running user-built modules. Includes\nconditional scheduling, restart after interruption, packaging of\nreusable modules, tools for developing arbitrary automated workflows,\nautomated interweaving of modules of different temporal resolution, and\ntools for visualizing and understanding the DES project.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES.core_1.0.10.tar.gz" ], "version": "1.0.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES.core_1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES.core_1.0.9.tar.gz" ], "version": "1.0.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES.core_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES.core_2.1.0.tar.gz" ], "version": "2.1.0" } ] }, "r-spades-tools": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-backports", "r-checkmate", "r-circstats", "r-data-table", "r-fastmatch", "r-fpcompare", "r-magrittr", "r-quickplot", "r-raster", "r-rcpp", "r-reproducible", "r-require", "r-rgeos", "r-sp", "r-terra" ], "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES.tools_2.0.7.tar.gz", "https://cloud.r-project.org/src/contrib/SpaDES.tools_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/SpaDES.tools_1.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/SpaDES.tools_0.3.10.tar.gz", "https://cloud.r-project.org/src/contrib/SpaDES.tools_0.3.9.tar.gz", "https://cloud.r-project.org/src/contrib/SpaDES.tools_0.3.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=SpaDES.tools" ], "licenses": [], "maintainers": [ "dorton21" ], "name": "r-spades-tools", "patches": [], "summary": "Tools for Spatially Explicit Discrete Event Simulation (SpaDES) Models.\nProvides GIS and map utilities, plus additional modeling tools for\ndeveloping cellular automata, dynamic raster models, and agent based\nmodels in 'SpaDES'. Included are various methods for spatial spreading,\nspatial agents, GIS operations, random map generation, and others. See\n'?SpaDES.tools' for an categorized overview of these additional tools.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES.tools_0.3.10.tar.gz" ], "version": "0.3.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES.tools_0.3.6.tar.gz" ], "version": "0.3.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES.tools_0.3.9.tar.gz" ], "version": "0.3.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES.tools_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES.tools_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SpaDES.tools_2.0.7.tar.gz" ], "version": "2.0.7" } ] }, "r-spam": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "fortran", "gmake", "r", "r-dotcall64", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/spam_2.10-0.tar.gz", "https://cloud.r-project.org/src/contrib/spam_2.9-1.tar.gz", "https://cloud.r-project.org/src/contrib/spam_2.8-0.tar.gz", "https://cloud.r-project.org/src/contrib/spam_2.6-0.tar.gz", "https://cloud.r-project.org/src/contrib/spam_2.3-0.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=spam" ], "licenses": [ "LGPL-2.0-only OR BSD-3-Clause" ], "maintainers": [], "name": "r-spam", "patches": [], "summary": "SPArse Matrix. Set of functions for sparse matrix algebra. Differences\nwith other sparse matrix packages are: (1) we only support (essentially)\none sparse matrix format, (2) based on transparent and simple\nstructure(s), (3) tailored for MCMC calculations within G(M)RF. (4) and\nit is fast and scalable (with the extension package spam64).\nDocumentation about 'spam' is provided by vignettes included in this\npackage, see also Furrer and Sain (2010) ;\nsee 'citation(\"spam\")' for details.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/spam_2.10-0.tar.gz" ], "version": "2.10-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spam_2.3-0.2.tar.gz" ], "version": "2.3-0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spam_2.6-0.tar.gz" ], "version": "2.6-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spam_2.8-0.tar.gz" ], "version": "2.8-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spam_2.9-1.tar.gz" ], "version": "2.9-1" } ] }, "r-sparsem": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/SparseM_1.84-2.tar.gz", "https://cloud.r-project.org/src/contrib/SparseM_1.81.tar.gz", "https://cloud.r-project.org/src/contrib/SparseM_1.78.tar.gz", "https://cloud.r-project.org/src/contrib/SparseM_1.77.tar.gz", "https://cloud.r-project.org/src/contrib/SparseM_1.76.tar.gz", "https://cloud.r-project.org/src/contrib/SparseM_1.74.tar.gz", "https://cloud.r-project.org/src/contrib/SparseM_1.7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=SparseM" ], "licenses": [], "maintainers": [], "name": "r-sparsem", "patches": [], "summary": "Sparse Linear Algebra. Some basic linear algebra functionality for\nsparse matrices is provided: including Cholesky decomposition and\nbacksolving as well as standard R subsetting and Kronecker products.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/SparseM_1.7.tar.gz" ], "version": "1.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SparseM_1.74.tar.gz" ], "version": "1.74" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SparseM_1.76.tar.gz" ], "version": "1.76" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SparseM_1.77.tar.gz" ], "version": "1.77" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SparseM_1.78.tar.gz" ], "version": "1.78" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SparseM_1.81.tar.gz" ], "version": "1.81" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SparseM_1.84-2.tar.gz" ], "version": "1.84-2" } ] }, "r-sparsematrixstats": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-matrix", "r-matrixgenerics", "r-matrixstats", "r-rcpp" ], "downloads": [ "https://git.bioconductor.org/packages/sparseMatrixStats" ], "homepages": [ "https://bioconductor.org/packages/sparseMatrixStats" ], "licenses": [], "maintainers": [], "name": "r-sparsematrixstats", "patches": [], "summary": "Summary Statistics for Rows and Columns of Sparse Matrices. High\nperformance functions for row and column operations on sparse matrices.\nFor example: col / rowMeans2, col / rowMedians, col / rowVars etc.\nCurrently, the optimizations are limited to data in the column sparse\nformat. This package is inspired by the matrixStats package by Henrik\nBengtsson.\n", "version": [ { "repositories": [ { "commit": "75d85ba2c9c4c36887fef1a007883167aa85bd94", "type": "git", "url": "https://git.bioconductor.org/packages/sparseMatrixStats" } ], "version": "1.10.0" }, { "repositories": [ { "commit": "054bf939cd7220deaf8e768ff7029d0d38483c91", "type": "git", "url": "https://git.bioconductor.org/packages/sparseMatrixStats" } ], "version": "1.12.0" }, { "repositories": [ { "commit": "2923a3bb4e59cf0e05f0e21a8e8df66e670c4abc", "type": "git", "url": "https://git.bioconductor.org/packages/sparseMatrixStats" } ], "version": "1.14.0" }, { "repositories": [ { "commit": "2ad650c393497263c20d67d45d1a56ee6fa3b402", "type": "git", "url": "https://git.bioconductor.org/packages/sparseMatrixStats" } ], "version": "1.16.0" }, { "repositories": [ { "commit": "172c63ee6c8fa200d2fda5546750ab5ac8ddd858", "type": "git", "url": "https://git.bioconductor.org/packages/sparseMatrixStats" } ], "version": "1.18.0" }, { "repositories": [ { "commit": "9726f3d5e0f03b50c332d85d5e4c339c18b0494c", "type": "git", "url": "https://git.bioconductor.org/packages/sparseMatrixStats" } ], "version": "1.2.1" }, { "repositories": [ { "commit": "78627a842790af42b6634893087b2bb1f4ac0392", "type": "git", "url": "https://git.bioconductor.org/packages/sparseMatrixStats" } ], "version": "1.6.0" }, { "repositories": [ { "commit": "4f1e2213e5b0d6b3d817c2c9129b7566288916f6", "type": "git", "url": "https://git.bioconductor.org/packages/sparseMatrixStats" } ], "version": "1.8.0" } ] }, "r-spatial": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-mass" ], "downloads": [ "https://cloud.r-project.org/src/contrib/spatial_7.3-17.tar.gz", "https://cloud.r-project.org/src/contrib/spatial_7.3-16.tar.gz", "https://cloud.r-project.org/src/contrib/spatial_7.3-15.tar.gz", "https://cloud.r-project.org/src/contrib/spatial_7.3-12.tar.gz", "https://cloud.r-project.org/src/contrib/spatial_7.3-11.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=spatial" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-spatial", "patches": [], "summary": "Functions for Kriging and Point Pattern Analysis. Functions for kriging\nand point pattern analysis.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/spatial_7.3-11.tar.gz" ], "version": "7.3-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatial_7.3-12.tar.gz" ], "version": "7.3-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatial_7.3-15.tar.gz" ], "version": "7.3-15" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatial_7.3-16.tar.gz" ], "version": "7.3-16" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatial_7.3-17.tar.gz" ], "version": "7.3-17" } ] }, "r-spatialeco": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cluster", "r-dplyr", "r-envstats", "r-exactextractr", "r-ks", "r-maptools", "r-mass", "r-mgcv", "r-rann", "r-raster", "r-rcurl", "r-readr", "r-rgeos", "r-rms", "r-sf", "r-sp", "r-spatialpack", "r-spatstat", "r-spatstat-core", "r-spatstat-explore", "r-spatstat-geom", "r-spdep", "r-terra", "r-yaimpute" ], "downloads": [ "https://cloud.r-project.org/src/contrib/spatialEco_2.0-2.tar.gz", "https://cloud.r-project.org/src/contrib/spatialEco_2.0-0.tar.gz", "https://cloud.r-project.org/src/contrib/spatialEco_1.3-7.tar.gz", "https://cloud.r-project.org/src/contrib/spatialEco_1.3-5.tar.gz", "https://cloud.r-project.org/src/contrib/spatialEco_1.3-2.tar.gz", "https://cloud.r-project.org/src/contrib/spatialEco_1.3-1.tar.gz", "https://cloud.r-project.org/src/contrib/spatialEco_1.3-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=spatialEco" ], "licenses": [], "maintainers": [], "name": "r-spatialeco", "patches": [], "summary": "Spatial Analysis and Modelling Utilities. Utilities to support spatial\ndata manipulation, query, sampling and modelling. Functions include\nmodels for species population density, download utilities for climate\nand global deforestation spatial products, spatial smoothing,\nmultivariate separability, point process model for creating pseudo-\nabsences and sub-sampling, polygon and point-distance landscape metrics,\nauto-logistic model, sampling models, cluster optimization, statistical\nexploratory tools and raster-based metrics.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/spatialEco_1.3-0.tar.gz" ], "version": "1.3-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatialEco_1.3-1.tar.gz" ], "version": "1.3-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatialEco_1.3-2.tar.gz" ], "version": "1.3-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatialEco_1.3-5.tar.gz" ], "version": "1.3-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatialEco_1.3-7.tar.gz" ], "version": "1.3-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatialEco_2.0-0.tar.gz" ], "version": "2.0-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatialEco_2.0-2.tar.gz" ], "version": "2.0-2" } ] }, "r-spatialpack": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-fastmatrix" ], "downloads": [ "https://cloud.r-project.org/src/contrib/SpatialPack_0.4.tar.gz", "https://cloud.r-project.org/src/contrib/SpatialPack_0.3-8196.tar.gz", "https://cloud.r-project.org/src/contrib/SpatialPack_0.3-8.tar.gz", "https://cloud.r-project.org/src/contrib/SpatialPack_0.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=SpatialPack" ], "licenses": [], "maintainers": [], "name": "r-spatialpack", "patches": [], "summary": "Tools to assess the association between two spatial processes. Tools to\nassess the association between two spatial processes. Currently, several\nmethodologies are implemented: A modified t-test to perform hypothesis\ntesting about the independence between the processes, a suitable\nnonparametric correlation coefficient, the codispersion coefficient, and\nan F test for assessing the multiple correlation between one spatial\nprocess and several others. Functions for image processing and computing\nthe spatial association between images are also provided.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/SpatialPack_0.3.tar.gz" ], "version": "0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SpatialPack_0.3-8.tar.gz" ], "version": "0.3-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SpatialPack_0.3-8196.tar.gz" ], "version": "0.3-8196" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SpatialPack_0.4.tar.gz" ], "version": "0.4" } ] }, "r-spatialreg": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-boot", "r-coda", "r-expm", "r-gmodels", "r-learnbayes", "r-mass", "r-matrix", "r-multcomp", "r-nlme", "r-sf", "r-spdata", "r-spdep" ], "downloads": [ "https://cloud.r-project.org/src/contrib/spatialreg_1.3-5.tar.gz", "https://cloud.r-project.org/src/contrib/spatialreg_1.2-8.tar.gz", "https://cloud.r-project.org/src/contrib/spatialreg_1.2-6.tar.gz", "https://cloud.r-project.org/src/contrib/spatialreg_1.2-3.tar.gz", "https://cloud.r-project.org/src/contrib/spatialreg_1.2-1.tar.gz", "https://cloud.r-project.org/src/contrib/spatialreg_1.1-5.tar.gz", "https://cloud.r-project.org/src/contrib/spatialreg_1.1-3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=spatialreg" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-spatialreg", "patches": [], "summary": "Spatial Regression Analysis. A collection of all the estimation\nfunctions for spatial cross-sectional models (on lattice/areal data\nusing spatial weights matrices) contained up to now in 'spdep', 'sphet'\nand 'spse'. These model fitting functions include maximum likelihood\nmethods for cross-sectional models proposed by 'Cliff' and 'Ord' (1973,\nISBN:0850860369) and (1981, ISBN:0850860814), fitting methods initially\ndescribed by 'Ord' (1975) . The\nmodels are further described by 'Anselin' (1988)\n. Spatial two stage least squares and\nspatial general method of moment models initially proposed by 'Kelejian'\nand 'Prucha' (1998) and (1999)\n are provided. Impact methods and MCMC\nfitting methods proposed by 'LeSage' and 'Pace' (2009)\n are implemented for the family of cross-\nsectional spatial regression models. Methods for fitting the log\ndeterminant term in maximum likelihood and MCMC fitting are compared by\n'Bivand et al.' (2013) , and model fitting\nmethods by 'Bivand' and 'Piras' (2015) ; both\nof these articles include extensive lists of references. 'spatialreg' >=\n1.1-* correspond to 'spdep' >= 1.1-1, in which the model fitting\nfunctions are deprecated and pass through to 'spatialreg', but will mask\nthose in 'spatialreg'. From versions 1.2-*, the functions will be made\ndefunct in 'spdep'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/spatialreg_1.1-3.tar.gz" ], "version": "1.1-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatialreg_1.1-5.tar.gz" ], "version": "1.1-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatialreg_1.2-1.tar.gz" ], "version": "1.2-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatialreg_1.2-3.tar.gz" ], "version": "1.2-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatialreg_1.2-6.tar.gz" ], "version": "1.2-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatialreg_1.2-8.tar.gz" ], "version": "1.2-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatialreg_1.3-5.tar.gz" ], "version": "1.3-5" } ] }, "r-spatstat": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-abind", "r-deldir", "r-goftest", "r-matrix", "r-mgcv", "r-nlme", "r-polyclip", "r-rpart", "r-spatstat-core", "r-spatstat-data", "r-spatstat-explore", "r-spatstat-geom", "r-spatstat-linnet", "r-spatstat-model", "r-spatstat-random", "r-spatstat-univar", "r-spatstat-utils", "r-tensor" ], "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat_3.1-1.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat_3.0-5.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat_2.3-4.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat_2.3-0.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat_1.64-1.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat_1.63-3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=spatstat" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-spatstat", "patches": [], "summary": "Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests.\nComprehensive open-source toolbox for analysing Spatial Point Patterns.\nFocused mainly on two-dimensional point patterns, including\nmultitype/marked points, in any spatial region. Also supports three-\ndimensional point patterns, space-time point patterns in any number of\ndimensions, point patterns on a linear network, and patterns of other\ngeometrical objects. Supports spatial covariate data such as pixel\nimages. Contains over 2000 functions for plotting spatial data,\nexploratory data analysis, model-fitting, simulation, spatial sampling,\nmodel diagnostics, and formal inference. Data types include point\npatterns, line segment patterns, spatial windows, pixel images,\ntessellations, and linear networks. Exploratory methods include quadrat\ncounts, K-functions and their simulation envelopes, nearest neighbour\ndistance and empty space statistics, Fry plots, pair correlation\nfunction, kernel smoothed intensity, relative risk estimation with\ncross-validated bandwidth selection, mark correlation functions,\nsegregation indices, mark dependence diagnostics, and kernel estimates\nof covariate effects. Formal hypothesis tests of random pattern (chi-\nsquared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford,\nDao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-\nBerman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.\nParametric models can be fitted to point pattern data using the\nfunctions ppm(), kppm(), slrm(), dppm() similar to glm(). Types of\nmodels include Poisson, Gibbs and Cox point processes, Neyman-Scott\ncluster processes, and determinantal point processes. Models may involve\ndependence on covariates, inter-point interaction, cluster formation and\ndependence on marks. Models are fitted by maximum likelihood, logistic\nregression, minimum contrast, and composite likelihood methods. A model\ncan be fitted to a list of point patterns (replicated point pattern\ndata) using the function mppm(). The model can include random effects\nand fixed effects depending on the experimental design, in addition to\nall the features listed above. Fitted point process models can be\nsimulated, automatically. Formal hypothesis tests of a fitted model are\nsupported (likelihood ratio test, analysis of deviance, Monte Carlo\ntests) along with basic tools for model selection (stepwise(), AIC())\nand variable selection (sdr). Tools for validating the fitted model\ninclude simulation envelopes, residuals, residual plots and Q-Q plots,\nleverage and influence diagnostics, partial residuals, and added\nvariable plots.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat_1.63-3.tar.gz" ], "version": "1.63-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat_1.64-1.tar.gz" ], "version": "1.64-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat_2.3-0.tar.gz" ], "version": "2.3-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat_2.3-4.tar.gz" ], "version": "2.3-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat_3.0-5.tar.gz" ], "version": "3.0-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat_3.1-1.tar.gz" ], "version": "3.1-1" } ] }, "r-spatstat-core": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-abind", "r-goftest", "r-matrix", "r-mgcv", "r-nlme", "r-rpart", "r-spatstat-data", "r-spatstat-geom", "r-spatstat-random", "r-spatstat-sparse", "r-spatstat-utils", "r-tensor" ], "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.core_2.4-4.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.core_2.3-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=spatstat.core" ], "licenses": [], "maintainers": [], "name": "r-spatstat-core", "patches": [], "summary": "Core Functionality of the 'spatstat' Family. Functionality for data\nanalysis and modelling of spatial data, mainly spatial point patterns,\nin the 'spatstat' family of packages. (Excludes analysis of spatial data\non a linear network, which is covered by the separate package\n'spatstat.linnet'.) Exploratory methods include quadrat counts,\nK-functions and their simulation envelopes, nearest neighbour distance\nand empty space statistics, Fry plots, pair correlation function, kernel\nsmoothed intensity, relative risk estimation with cross-validated\nbandwidth selection, mark correlation functions, segregation indices,\nmark dependence diagnostics, and kernel estimates of covariate effects.\nFormal hypothesis tests of random pattern (chi-squared, Kolmogorov-\nSmirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-\nstage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-\nLawson, Kolmogorov-Smirnov, ANOVA) are also supported. Parametric models\ncan be fitted to point pattern data using the functions ppm(), kppm(),\nslrm(), dppm() similar to glm(). Types of models include Poisson, Gibbs\nand Cox point processes, Neyman-Scott cluster processes, and\ndeterminantal point processes. Models may involve dependence on\ncovariates, inter-point interaction, cluster formation and dependence on\nmarks. Models are fitted by maximum likelihood, logistic regression,\nminimum contrast, and composite likelihood methods. A model can be\nfitted to a list of point patterns (replicated point pattern data) using\nthe function mppm(). The model can include random effects and fixed\neffects depending on the experimental design, in addition to all the\nfeatures listed above. Fitted point process models can be simulated,\nautomatically. Formal hypothesis tests of a fitted model are supported\n(likelihood ratio test, analysis of deviance, Monte Carlo tests) along\nwith basic tools for model selection (stepwise(), AIC()) and variable\nselection (sdr). Tools for validating the fitted model include\nsimulation envelopes, residuals, residual plots and Q-Q plots, leverage\nand influence diagnostics, partial residuals, and added variable plots.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.core_2.3-2.tar.gz" ], "version": "2.3-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.core_2.4-4.tar.gz" ], "version": "2.4-4" } ] }, "r-spatstat-data": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-matrix", "r-spatstat-utils" ], "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.data_3.1-2.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.data_3.0-1.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.data_3.0-0.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.data_2.2-0.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.data_2.1-2.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.data_1.7-0.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.data_1.4-3.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.data_1.4-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=spatstat.data" ], "licenses": [], "maintainers": [], "name": "r-spatstat-data", "patches": [], "summary": "Datasets for 'spatstat' Family. Contains all the datasets for the\n'spatstat' family of packages.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.data_1.4-0.tar.gz" ], "version": "1.4-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.data_1.4-3.tar.gz" ], "version": "1.4-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.data_1.7-0.tar.gz" ], "version": "1.7-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.data_2.1-2.tar.gz" ], "version": "2.1-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.data_2.2-0.tar.gz" ], "version": "2.2-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.data_3.0-0.tar.gz" ], "version": "3.0-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.data_3.0-1.tar.gz" ], "version": "3.0-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.data_3.1-2.tar.gz" ], "version": "3.1-2" } ] }, "r-spatstat-explore": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-abind", "r-goftest", "r-matrix", "r-nlme", "r-spatstat-data", "r-spatstat-geom", "r-spatstat-random", "r-spatstat-sparse", "r-spatstat-univar", "r-spatstat-utils" ], "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.explore_3.3-2.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.explore_3.1-0.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.explore_3.0-3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=spatstat.explore" ], "licenses": [], "maintainers": [], "name": "r-spatstat-explore", "patches": [], "summary": "Exploratory Data Analysis for the 'spatstat' Family. Functionality for\nexploratory data analysis and nonparametric analysis of spatial data,\nmainly spatial point patterns, in the 'spatstat' family of packages.\n(Excludes analysis of spatial data on a linear network, which is covered\nby the separate package 'spatstat.linnet'.) Methods include quadrat\ncounts, K-functions and their simulation envelopes, nearest neighbour\ndistance and empty space statistics, Fry plots, pair correlation\nfunction, kernel smoothed intensity, relative risk estimation with\ncross-validated bandwidth selection, mark correlation functions,\nsegregation indices, mark dependence diagnostics, and kernel estimates\nof covariate effects. Formal hypothesis tests of random pattern (chi-\nsquared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford,\nDao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-\nBerman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.explore_3.0-3.tar.gz" ], "version": "3.0-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.explore_3.1-0.tar.gz" ], "version": "3.1-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.explore_3.3-2.tar.gz" ], "version": "3.3-2" } ] }, "r-spatstat-geom": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-deldir", "r-polyclip", "r-spatstat-data", "r-spatstat-univar", "r-spatstat-utils" ], "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.geom_3.3-2.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.geom_3.1-0.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.geom_3.0-3.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.geom_2.4-0.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.geom_2.3-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=spatstat.geom" ], "licenses": [], "maintainers": [], "name": "r-spatstat-geom", "patches": [], "summary": "Geometrical Functionality of the 'spatstat' Family. Defines spatial data\ntypes and supports geometrical operations on them. Data types include\npoint patterns, windows (domains), pixel images, line segment patterns,\ntessellations and hyperframes. Capabilities include creation and\nmanipulation of data (using command line or graphical interaction),\nplotting, geometrical operations (rotation, shift, rescale, affine\ntransformation), convex hull, discretisation and pixellation, Dirichlet\ntessellation, Delaunay triangulation, pairwise distances, nearest-\nneighbour distances, distance transform, morphological operations\n(erosion, dilation, closing, opening), quadrat counting, geometrical\nmeasurement, geometrical covariance, colour maps, calculus on spatial\ndomains, Gaussian blur, level sets of images, transects of images,\nintersections between objects, minimum distance matching. (Excludes\nspatial data on a network, which are supported by the package\n'spatstat.linnet'.)\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.geom_2.3-1.tar.gz" ], "version": "2.3-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.geom_2.4-0.tar.gz" ], "version": "2.4-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.geom_3.0-3.tar.gz" ], "version": "3.0-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.geom_3.1-0.tar.gz" ], "version": "3.1-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.geom_3.3-2.tar.gz" ], "version": "3.3-2" } ] }, "r-spatstat-linnet": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-matrix", "r-spatstat-core", "r-spatstat-data", "r-spatstat-explore", "r-spatstat-geom", "r-spatstat-model", "r-spatstat-random", "r-spatstat-sparse", "r-spatstat-univar", "r-spatstat-utils" ], "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.linnet_3.2-1.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.linnet_3.1-0.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.linnet_2.3-2.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.linnet_2.3-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=spatstat.linnet" ], "licenses": [], "maintainers": [], "name": "r-spatstat-linnet", "patches": [], "summary": "Linear Networks Functionality of the 'spatstat' Family. Defines types of\nspatial data on a linear network and provides functionality for\ngeometrical operations, data analysis and modelling of data on a linear\nnetwork, in the 'spatstat' family of packages. Contains definitions and\nsupport for linear networks, including creation of networks, geometrical\nmeasurements, topological connectivity, geometrical operations such as\ninserting and deleting vertices, intersecting a network with another\nobject, and interactive editing of networks. Data types defined on a\nnetwork include point patterns, pixel images, functions, and\ntessellations. Exploratory methods include kernel estimation of\nintensity on a network, K-functions and pair correlation functions on a\nnetwork, simulation envelopes, nearest neighbour distance and empty\nspace distance, relative risk estimation with cross-validated bandwidth\nselection. Formal hypothesis tests of random pattern (chi-squared,\nKolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-\nGenton, two-stage Monte Carlo) and tests for covariate effects (Cox-\nBerman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.\nParametric models can be fitted to point pattern data using the function\nlppm() similar to glm(). Only Poisson models are implemented so far.\nModels may involve dependence on covariates and dependence on marks.\nModels are fitted by maximum likelihood. Fitted point process models can\nbe simulated, automatically. Formal hypothesis tests of a fitted model\nare supported (likelihood ratio test, analysis of deviance, Monte Carlo\ntests) along with basic tools for model selection (stepwise(), AIC())\nand variable selection (sdr). Tools for validating the fitted model\ninclude simulation envelopes, residuals, residual plots and Q-Q plots,\nleverage and influence diagnostics, partial residuals, and added\nvariable plots. Random point patterns on a network can be generated\nusing a variety of models.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.linnet_2.3-1.tar.gz" ], "version": "2.3-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.linnet_2.3-2.tar.gz" ], "version": "2.3-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.linnet_3.1-0.tar.gz" ], "version": "3.1-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.linnet_3.2-1.tar.gz" ], "version": "3.2-1" } ] }, "r-spatstat-model": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-abind", "r-goftest", "r-matrix", "r-mgcv", "r-nlme", "r-rpart", "r-spatstat-data", "r-spatstat-explore", "r-spatstat-geom", "r-spatstat-random", "r-spatstat-sparse", "r-spatstat-univar", "r-spatstat-utils", "r-tensor" ], "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.model_3.3-1.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.model_3.2-3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=spatstat.model" ], "licenses": [], "maintainers": [], "name": "r-spatstat-model", "patches": [], "summary": "Parametric Statistical Modelling and Inference for the 'spatstat'\nFamily. Functionality for parametric statistical modelling and inference\nfor spatial data, mainly spatial point patterns, in the 'spatstat'\nfamily of packages. (Excludes analysis of spatial data on a linear\nnetwork, which is covered by the separate package 'spatstat.linnet'.)\nSupports parametric modelling, formal statistical inference, and model\nvalidation. Parametric models include Poisson point processes, Cox point\nprocesses, Neyman-Scott cluster processes, Gibbs point processes and\ndeterminantal point processes. Models can be fitted to data using\nmaximum likelihood, maximum pseudolikelihood, maximum composite\nlikelihood and the method of minimum contrast. Fitted models can be\nsimulated and predicted. Formal inference includes hypothesis tests\n(quadrat counting tests, Cressie-Read tests, Clark-Evans test, Berman\ntest, Diggle-Cressie-Loosmore-Ford test, scan test, studentised\npermutation test, segregation test, ANOVA tests of fitted models,\nadjusted composite likelihood ratio test, envelope tests, Dao-Genton\ntest, balanced independent two-stage test), confidence intervals for\nparameters, and prediction intervals for point counts. Model validation\ntechniques include leverage, influence, partial residuals, added\nvariable plots, diagnostic plots, pseudoscore residual plots, model\ncompensators and Q-Q plots.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.model_3.2-3.tar.gz" ], "version": "3.2-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.model_3.3-1.tar.gz" ], "version": "3.3-1" } ] }, "r-spatstat-random": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-spatstat-data", "r-spatstat-geom", "r-spatstat-univar", "r-spatstat-utils" ], "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.random_3.3-1.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.random_3.1-4.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.random_3.0-1.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.random_2.2-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=spatstat.random" ], "licenses": [], "maintainers": [], "name": "r-spatstat-random", "patches": [], "summary": "Random Generation Functionality for the 'spatstat' Family. Functionality\nfor random generation of spatial data in the 'spatstat' family of\npackages. Generates random spatial patterns of points according to many\nsimple rules (complete spatial randomness, Poisson, binomial, random\ngrid, systematic, cell), randomised alteration of patterns (thinning,\nrandom shift, jittering), simulated realisations of random point\nprocesses (simple sequential inhibition, Matern inhibition models,\nMatern cluster process, Neyman-Scott cluster processes, log-Gaussian Cox\nprocesses, product shot noise cluster processes) and simulation of Gibbs\npoint processes (Metropolis-Hastings birth-death-shift algorithm,\nalternating Gibbs sampler). Also generates random spatial patterns of\nline segments, random tessellations, and random images (random noise,\nrandom mosaics). Excludes random generation on a linear network, which\nis covered by the separate package 'spatstat.linnet'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.random_2.2-0.tar.gz" ], "version": "2.2-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.random_3.0-1.tar.gz" ], "version": "3.0-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.random_3.1-4.tar.gz" ], "version": "3.1-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.random_3.3-1.tar.gz" ], "version": "3.3-1" } ] }, "r-spatstat-sparse": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-abind", "r-matrix", "r-spatstat-utils", "r-tensor" ], "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.sparse_3.1-0.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.sparse_3.0-1.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.sparse_3.0-0.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.sparse_2.1-1.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.sparse_2.1-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=spatstat.sparse" ], "licenses": [], "maintainers": [], "name": "r-spatstat-sparse", "patches": [], "summary": "Sparse Three-Dimensional Arrays and Linear Algebra Utilities. Defines\nsparse three-dimensional arrays and supports standard operations on\nthem. The package also includes utility functions for matrix\ncalculations that are common in statistics, such as quadratic forms.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.sparse_2.1-0.tar.gz" ], "version": "2.1-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.sparse_2.1-1.tar.gz" ], "version": "2.1-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.sparse_3.0-0.tar.gz" ], "version": "3.0-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.sparse_3.0-1.tar.gz" ], "version": "3.0-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.sparse_3.1-0.tar.gz" ], "version": "3.1-0" } ] }, "r-spatstat-univar": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-spatstat-utils" ], "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.univar_3.0-0.tar.gz", null ], "homepages": [ "http://spatstat.org/" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-spatstat-univar", "patches": [], "summary": "Estimation of one-dimensional probability distributions including kernel\ndensity estimation, weighted empirical cumulative distribution\nfunctions, Kaplan-Meier and reduced-sample estimators for right-censored\ndata, heat kernels, kernel properties, quantiles and integration.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.univar_3.0-0.tar.gz" ], "version": "3.0-0" } ] }, "r-spatstat-utils": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.utils_3.1-0.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.utils_3.0-2.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.utils_3.0-1.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.utils_2.3-1.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.utils_2.3-0.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.utils_1.20-2.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.utils_1.17-0.tar.gz", "https://cloud.r-project.org/src/contrib/spatstat.utils_1.15-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=spatstat.utils" ], "licenses": [], "maintainers": [], "name": "r-spatstat-utils", "patches": [], "summary": "Utility Functions for 'spatstat'. Contains utility functions for the\n'spatstat' package which may also be useful for other purposes.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.utils_1.15-0.tar.gz" ], "version": "1.15-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.utils_1.17-0.tar.gz" ], "version": "1.17-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.utils_1.20-2.tar.gz" ], "version": "1.20-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.utils_2.3-0.tar.gz" ], "version": "2.3-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.utils_2.3-1.tar.gz" ], "version": "2.3-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.utils_3.0-1.tar.gz" ], "version": "3.0-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.utils_3.0-2.tar.gz" ], "version": "3.0-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spatstat.utils_3.1-0.tar.gz" ], "version": "3.1-0" } ] }, "r-spdata": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-raster", "r-sp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/spData_2.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/spData_2.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/spData_2.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/spData_2.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/spData_0.3.8.tar.gz", "https://cloud.r-project.org/src/contrib/spData_0.3.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=spData" ], "licenses": [], "maintainers": [], "name": "r-spdata", "patches": [], "summary": "Datasets for Spatial Analysis. Diverse spatial datasets for\ndemonstrating, benchmarking and teaching spatial data analysis. It\nincludes R data of class sf (defined by the package 'sf'), Spatial\n('sp'), and nb ('spdep'). Unlike other spatial data packages such as\n'rnaturalearth' and 'maps', it also contains data stored in a range of\nfile formats including GeoJSON, ESRI Shapefile and GeoPackage. Some of\nthe datasets are designed to illustrate specific analysis techniques.\ncycle_hire() and cycle_hire_osm(), for example, is designed to\nillustrate point pattern analysis techniques.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/spData_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spData_0.3.8.tar.gz" ], "version": "0.3.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spData_2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spData_2.2.0.tar.gz" ], "version": "2.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spData_2.2.2.tar.gz" ], "version": "2.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/spData_2.3.1.tar.gz" ], "version": "2.3.1" } ] }, "r-spdep": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-boot", "r-coda", "r-deldir", "r-e1071", "r-expm", "r-gmodels", "r-learnbayes", "r-mass", "r-matrix", "r-nlme", "r-s2", "r-sf", "r-sp", "r-spdata", "r-units" ], "downloads": [ "https://cloud.r-project.org/src/contrib/spdep_1.3-5.tar.gz", "https://cloud.r-project.org/src/contrib/spdep_1.2-8.tar.gz", "https://cloud.r-project.org/src/contrib/spdep_1.2-7.tar.gz", "https://cloud.r-project.org/src/contrib/spdep_1.2-4.tar.gz", "https://cloud.r-project.org/src/contrib/spdep_1.2-2.tar.gz", "https://cloud.r-project.org/src/contrib/spdep_1.2-1.tar.gz", "https://cloud.r-project.org/src/contrib/spdep_1.1-5.tar.gz", "https://cloud.r-project.org/src/contrib/spdep_1.1-2.tar.gz", "https://cloud.r-project.org/src/contrib/spdep_1.0-2.tar.gz", "https://cloud.r-project.org/src/contrib/spdep_0.6-13.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=spdep" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-spdep", "patches": [], "summary": "Spatial Dependence: Weighting Schemes, Statistics. A collection of\nfunctions to create spatial weights matrix objects from polygon\n'contiguities', from point patterns by distance and tessellations, for\nsummarizing these objects, and for permitting their use in spatial data\nanalysis, including regional aggregation by minimum spanning tree; a\ncollection of tests for spatial 'autocorrelation', including global\n'Morans I' and 'Gearys C' proposed by 'Cliff' and 'Ord' (1973, ISBN:\n0850860369) and (1981, ISBN: 0850860814), 'Hubert/Mantel' general cross\nproduct statistic, Empirical Bayes estimates and 'Assuncao/Reis' (1999)\n for details.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/splines2_0.5.3.tar.gz" ], "version": "0.5.3" } ] }, "r-splitstackshape": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-data-table" ], "downloads": [ "https://cloud.r-project.org/src/contrib/splitstackshape_1.4.8.tar.gz", "https://cloud.r-project.org/src/contrib/splitstackshape_1.4.6.tar.gz", "https://cloud.r-project.org/src/contrib/splitstackshape_1.4.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=splitstackshape" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-splitstackshape", "patches": [], "summary": "Stack and Reshape Datasets After Splitting Concatenated Values. Online\ndata collection tools like Google Forms often export multiple-response\nquestions with data concatenated in cells. The concat.split (cSplit)\nfamily of functions splits such data into separate cells. The package\nalso includes functions to stack groups of columns and to reshape wide\ndata, even when the data are \"unbalanced\" something which reshape (from\nbase R) does not handle, and which melt and dcast from reshape2 do not\neasily handle.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/splitstackshape_1.4.4.tar.gz" ], "version": "1.4.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/splitstackshape_1.4.6.tar.gz" ], "version": "1.4.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/splitstackshape_1.4.8.tar.gz" ], "version": "1.4.8" } ] }, "r-sqldf": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-chron", "r-dbi", "r-gsubfn", "r-proto", "r-rsqlite" ], "downloads": [ "https://cloud.r-project.org/src/contrib/sqldf_0.4-11.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=sqldf" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-sqldf", "patches": [], "summary": "Manipulate R Data Frames Using SQL. The sqldf() function is typically\npassed a single argument which is an SQL select statement where the\ntable names are ordinary R data frame names. sqldf() transparently sets\nup a database, imports the data frames into that database, performs the\nSQL select or other statement and returns the result using a heuristic\nto determine which class to assign to each column of the returned data\nframe. The sqldf() or read.csv.sql() functions can also be used to read\nfiltered files into R even if the original files are larger than R\nitself can handle. 'RSQLite', 'RH2', 'RMySQL' and 'RPostgreSQL' backends\nare supported.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/sqldf_0.4-11.tar.gz" ], "version": "0.4-11" } ] }, "r-squarem": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/SQUAREM_2021.1.tar.gz", "https://cloud.r-project.org/src/contrib/SQUAREM_2017.10-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=SQUAREM" ], "licenses": [], "maintainers": [], "name": "r-squarem", "patches": [], "summary": "Squared Extrapolation Methods for Accelerating EM-Like Monotone\nAlgorithms. Algorithms for accelerating the convergence of slow,\nmonotone sequences from smooth, contraction mapping such as the EM\nalgorithm. It can be used to accelerate any smooth, linearly convergent\nacceleration scheme. A tutorial style introduction to this package is\navailable in a vignette on the CRAN download page or, when the package\nis loaded in an R session, with vignette(\"SQUAREM\"). Refer to the J Stat\nSoftware article: .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/SQUAREM_2017.10-1.tar.gz" ], "version": "2017.10-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SQUAREM_2021.1.tar.gz" ], "version": "2021.1" } ] }, "r-squash": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/squash_1.0.9.tar.gz", "https://cloud.r-project.org/src/contrib/squash_1.0.8.tar.gz", "https://cloud.r-project.org/src/contrib/squash_1.0.7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=squash" ], "licenses": [ "Artistic-2.0" ], "maintainers": [], "name": "r-squash", "patches": [], "summary": "Color-Based Plots for Multivariate Visualization. Functions for color-\nbased visualization of multivariate data, i.e. colorgrams or heatmaps.\nLower-level functions map numeric values to colors, display a matrix as\nan array of colors, and draw color keys. Higher-level plotting functions\ngenerate a bivariate histogram, a dendrogram aligned with a color-coded\nmatrix, a triangular distance matrix, and more.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/squash_1.0.7.tar.gz" ], "version": "1.0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/squash_1.0.8.tar.gz" ], "version": "1.0.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/squash_1.0.9.tar.gz" ], "version": "1.0.9" } ] }, "r-sseq": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-catools", "r-rcolorbrewer" ], "downloads": [ "https://git.bioconductor.org/packages/sSeq" ], "homepages": [ "https://bioconductor.org/packages/sSeq" ], "licenses": [], "maintainers": [], "name": "r-sseq", "patches": [], "summary": "Shrinkage estimation of dispersion in Negative Binomial models for RNA-\nseq experiments with small sample size. The purpose of this package is\nto discover the genes that are differentially expressed between two\nconditions in RNA-seq experiments. Gene expression is measured in counts\nof transcripts and modeled with the Negative Binomial (NB) distribution\nusing a shrinkage approach for dispersion estimation. The method of\nmoment (MM) estimates for dispersion are shrunk towards an estimated\ntarget, which minimizes the average squared difference between the\nshrinkage estimates and the initial estimates. The exact per-gene\nprobability under the NB model is calculated, and used to test the\nhypothesis that the expected expression of a gene in two conditions\nidentically follow a NB distribution.\n", "version": [ { "repositories": [ { "commit": "20ccffeb60196914975aa1feef902ddba659c571", "type": "git", "url": "https://git.bioconductor.org/packages/sSeq" } ], "version": "1.14.0" }, { "repositories": [ { "commit": "b7f2b99dbd4a12ee9d18b0ec9898f13f1038479e", "type": "git", "url": "https://git.bioconductor.org/packages/sSeq" } ], "version": "1.16.0" }, { "repositories": [ { "commit": "1f65e5a55ce0d51672b785450031872e6db5ca0f", "type": "git", "url": "https://git.bioconductor.org/packages/sSeq" } ], "version": "1.18.0" }, { "repositories": [ { "commit": "91f31440323612cb04beb44404ab0a1bcb3ad87d", "type": "git", "url": "https://git.bioconductor.org/packages/sSeq" } ], "version": "1.20.1" }, { "repositories": [ { "commit": "fa3895c9578edddca17b5d13a2678ee5830b85cc", "type": "git", "url": "https://git.bioconductor.org/packages/sSeq" } ], "version": "1.22.0" }, { "repositories": [ { "commit": "401f6805628bdf6579cc0e643b7ed54319f024be", "type": "git", "url": "https://git.bioconductor.org/packages/sSeq" } ], "version": "1.28.0" }, { "repositories": [ { "commit": "c0d3c305755d888f64d334a4ab5fa54c623054cf", "type": "git", "url": "https://git.bioconductor.org/packages/sSeq" } ], "version": "1.32.0" }, { "repositories": [ { "commit": "882bea1664f55d85550a7185cbd4a0108c35df36", "type": "git", "url": "https://git.bioconductor.org/packages/sSeq" } ], "version": "1.34.0" }, { "repositories": [ { "commit": "0345ac579c4bdcc9c42c24831ad86fc6225c5cb9", "type": "git", "url": "https://git.bioconductor.org/packages/sSeq" } ], "version": "1.36.0" }, { "repositories": [ { "commit": "09242bb94d72ff13e3f18c3588934149f27ac374", "type": "git", "url": "https://git.bioconductor.org/packages/sSeq" } ], "version": "1.38.0" } ] }, "r-stabledist": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/stabledist_0.7-2.tar.gz", "https://cloud.r-project.org/src/contrib/stabledist_0.7-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=stabledist" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-stabledist", "patches": [], "summary": "Stable Distribution Functions. Density, Probability and Quantile\nfunctions, and random number generation for (skew) stable distributions,\nusing the parametrizations of Nolan.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/stabledist_0.7-1.tar.gz" ], "version": "0.7-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stabledist_0.7-2.tar.gz" ], "version": "0.7-2" } ] }, "r-stanheaders": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "pandoc", "r", "r-rcppeigen", "r-rcppparallel" ], "downloads": [ "https://cloud.r-project.org/src/contrib/StanHeaders_2.32.10.tar.gz", "https://cloud.r-project.org/src/contrib/StanHeaders_2.21.0-7.tar.gz", "https://cloud.r-project.org/src/contrib/StanHeaders_2.21.0-6.tar.gz", "https://cloud.r-project.org/src/contrib/StanHeaders_2.18.1-10.tar.gz", "https://cloud.r-project.org/src/contrib/StanHeaders_2.18.1.tar.gz", "https://cloud.r-project.org/src/contrib/StanHeaders_2.17.1.tar.gz", "https://cloud.r-project.org/src/contrib/StanHeaders_2.10.0-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=StanHeaders" ], "licenses": [], "maintainers": [], "name": "r-stanheaders", "patches": [], "summary": "C++ Header Files for Stan. The C++ header files of the Stan project are\nprovided by this package, but it contains no R code, vignettes, or\nfunction documentation. There is a shared object containing part of the\nCVODES library, but it is not accessible from R. StanHeaders is only\nuseful for developers who want to utilize the LinkingTo directive of\ntheir package's DESCRIPTION file to build on the Stan library without\nincurring unnecessary dependencies. The Stan project develops a\nprobabilistic programming language that implements full or approximate\nBayesian statistical inference via Markov Chain Monte Carlo or\nvariational methods and implements (optionally penalized) maximum\nlikelihood estimation via optimization. The Stan library includes an\nadvanced automatic differentiation scheme, templated statistical and\nlinear algebra functions that can handle the automatically\ndifferentiable scalar types (and doubles, ints, etc.), and a parser for\nthe Stan language. The 'rstan' package provides user-facing R functions\nto parse, compile, test, estimate, and analyze Stan models.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/StanHeaders_2.10.0-2.tar.gz" ], "version": "2.10.0-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/StanHeaders_2.17.1.tar.gz" ], "version": "2.17.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/StanHeaders_2.18.1.tar.gz" ], "version": "2.18.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/StanHeaders_2.18.1-10.tar.gz" ], "version": "2.18.1-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/StanHeaders_2.21.0-6.tar.gz" ], "version": "2.21.0-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/StanHeaders_2.21.0-7.tar.gz" ], "version": "2.21.0-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/StanHeaders_2.32.10.tar.gz" ], "version": "2.32.10" } ] }, "r-stargazer": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/stargazer_5.2.3.tar.gz", "https://cloud.r-project.org/src/contrib/stargazer_5.2.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=stargazer" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-stargazer", "patches": [], "summary": "Well-Formatted Regression and Summary Statistics Tables. Produces LaTeX\ncode, HTML/CSS code and ASCII text for well-formatted tables that hold\nregression analysis results from several models side-by-side, as well as\nsummary statistics.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/stargazer_5.2.2.tar.gz" ], "version": "5.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stargazer_5.2.3.tar.gz" ], "version": "5.2.3" } ] }, "r-stars": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-abind", "r-classint", "r-lwgeom", "r-rlang", "r-sf", "r-units" ], "downloads": [ "https://cloud.r-project.org/src/contrib/stars_0.6-6.tar.gz", "https://cloud.r-project.org/src/contrib/stars_0.6-1.tar.gz", "https://cloud.r-project.org/src/contrib/stars_0.5-6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=stars" ], "licenses": [], "maintainers": [], "name": "r-stars", "patches": [], "summary": "Spatiotemporal Arrays, Raster and Vector Data Cubes. Reading,\nmanipulating, writing and plotting spatiotemporal arrays (raster and\nvector data cubes) in 'R', using 'GDAL' bindings provided by 'sf', and\n'NetCDF' bindings by 'ncmeta' and 'RNetCDF'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/stars_0.5-6.tar.gz" ], "version": "0.5-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stars_0.6-1.tar.gz" ], "version": "0.6-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stars_0.6-6.tar.gz" ], "version": "0.6-6" } ] }, "r-statmod": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/statmod_1.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/statmod_1.4.37.tar.gz", "https://cloud.r-project.org/src/contrib/statmod_1.4.36.tar.gz", "https://cloud.r-project.org/src/contrib/statmod_1.4.35.tar.gz", "https://cloud.r-project.org/src/contrib/statmod_1.4.32.tar.gz", "https://cloud.r-project.org/src/contrib/statmod_1.4.30.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=statmod" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-statmod", "patches": [], "summary": "Statistical Modeling. A collection of algorithms and functions to aid\nstatistical modeling. Includes limiting dilution analysis (aka ELDA),\ngrowth curve comparisons, mixed linear models, heteroscedastic\nregression, inverse-Gaussian probability calculations, Gauss quadrature\nand a secure convergence algorithm for nonlinear models. Also includes\nadvanced generalized linear model functions including Tweedie and\nDigamma distributional families and a secure convergence algorithm.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/statmod_1.4.30.tar.gz" ], "version": "1.4.30" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/statmod_1.4.32.tar.gz" ], "version": "1.4.32" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/statmod_1.4.35.tar.gz" ], "version": "1.4.35" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/statmod_1.4.36.tar.gz" ], "version": "1.4.36" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/statmod_1.4.37.tar.gz" ], "version": "1.4.37" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/statmod_1.5.0.tar.gz" ], "version": "1.5.0" } ] }, "r-statnet-common": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-coda", "r-rle" ], "downloads": [ "https://cloud.r-project.org/src/contrib/statnet.common_4.9.0.tar.gz", "https://cloud.r-project.org/src/contrib/statnet.common_4.8.0.tar.gz", "https://cloud.r-project.org/src/contrib/statnet.common_4.7.0.tar.gz", "https://cloud.r-project.org/src/contrib/statnet.common_4.6.0.tar.gz", "https://cloud.r-project.org/src/contrib/statnet.common_4.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/statnet.common_4.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/statnet.common_4.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/statnet.common_4.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/statnet.common_3.3.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=statnet.common" ], "licenses": [], "maintainers": [], "name": "r-statnet-common", "patches": [], "summary": "Common R Scripts and Utilities Used by the Statnet Project Software.\nNon-statistical utilities used by the software developed by the Statnet\nProject. They may also be of use to others.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/statnet.common_3.3.0.tar.gz" ], "version": "3.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/statnet.common_4.2.0.tar.gz" ], "version": "4.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/statnet.common_4.3.0.tar.gz" ], "version": "4.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/statnet.common_4.4.1.tar.gz" ], "version": "4.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/statnet.common_4.5.0.tar.gz" ], "version": "4.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/statnet.common_4.6.0.tar.gz" ], "version": "4.6.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/statnet.common_4.7.0.tar.gz" ], "version": "4.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/statnet.common_4.8.0.tar.gz" ], "version": "4.8.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/statnet.common_4.9.0.tar.gz" ], "version": "4.9.0" } ] }, "r-stringfish": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-rcpp", "r-rcppparallel" ], "downloads": [ "https://cloud.r-project.org/src/contrib/stringfish_0.16.0.tar.gz", "https://cloud.r-project.org/src/contrib/stringfish_0.15.7.tar.gz", "https://cloud.r-project.org/src/contrib/stringfish_0.15.5.tar.gz", "https://cloud.r-project.org/src/contrib/stringfish_0.14.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=stringfish" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [ "dorton21" ], "name": "r-stringfish", "patches": [], "summary": "Alt String Implementation. Provides an extendable, performant and\nmultithreaded 'alt-string' implementation backed by 'C++' vectors and\nstrings.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/stringfish_0.14.2.tar.gz" ], "version": "0.14.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stringfish_0.15.5.tar.gz" ], "version": "0.15.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stringfish_0.15.7.tar.gz" ], "version": "0.15.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stringfish_0.16.0.tar.gz" ], "version": "0.16.0" } ] }, "r-stringi": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "icu4c", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/stringi_1.8.4.tar.gz", "https://cloud.r-project.org/src/contrib/stringi_1.7.12.tar.gz", "https://cloud.r-project.org/src/contrib/stringi_1.7.8.tar.gz", "https://cloud.r-project.org/src/contrib/stringi_1.7.6.tar.gz", "https://cloud.r-project.org/src/contrib/stringi_1.6.2.tar.gz", "https://cloud.r-project.org/src/contrib/stringi_1.5.3.tar.gz", "https://cloud.r-project.org/src/contrib/stringi_1.4.3.tar.gz", "https://cloud.r-project.org/src/contrib/stringi_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/stringi_1.1.5.tar.gz", "https://cloud.r-project.org/src/contrib/stringi_1.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/stringi_1.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/stringi_1.1.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=stringi" ], "licenses": [ "custom" ], "maintainers": [], "name": "r-stringi", "patches": [], "summary": "Character String Processing Facilities. A multitude of character\nstring/text/natural language processing tools: pattern searching (e.g.,\nwith 'Java'-like regular expressions or the 'Unicode' collation\nalgorithm), random string generation, case mapping, string\ntransliteration, concatenation, sorting, padding, wrapping, Unicode\nnormalisation, date-time formatting and parsing, and many more. They are\nfast, consistent, convenient, and - owing to the use of the 'ICU'\n(International Components for Unicode) library - portable across all\nlocales and platforms.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/stringi_1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stringi_1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stringi_1.1.3.tar.gz" ], "version": "1.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stringi_1.1.5.tar.gz" ], "version": "1.1.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stringi_1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stringi_1.4.3.tar.gz" ], "version": "1.4.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stringi_1.5.3.tar.gz" ], "version": "1.5.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stringi_1.6.2.tar.gz" ], "version": "1.6.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stringi_1.7.12.tar.gz" ], "version": "1.7.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stringi_1.7.6.tar.gz" ], "version": "1.7.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stringi_1.7.8.tar.gz" ], "version": "1.7.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stringi_1.8.4.tar.gz" ], "version": "1.8.4" } ] }, "r-stringr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-glue", "r-lifecycle", "r-magrittr", "r-rlang", "r-stringi", "r-vctrs" ], "downloads": [ "https://cloud.r-project.org/src/contrib/stringr_1.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/stringr_1.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/stringr_1.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/stringr_1.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/stringr_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/stringr_1.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/stringr_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/stringr_1.0.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=stringr" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-stringr", "patches": [], "summary": "Simple, Consistent Wrappers for Common String Operations. A consistent,\nsimple and easy to use set of wrappers around the fantastic 'stringi'\npackage. All function and argument names (and positions) are consistent,\nall functions deal with \"NA\"'s and zero length vectors in the same way,\nand the output from one function is easy to feed into the input of\nanother.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/stringr_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stringr_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stringr_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stringr_1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stringr_1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stringr_1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stringr_1.5.0.tar.gz" ], "version": "1.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/stringr_1.5.1.tar.gz" ], "version": "1.5.1" } ] }, "r-strucchange": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-sandwich", "r-zoo" ], "downloads": [ "https://cloud.r-project.org/src/contrib/strucchange_1.5-3.tar.gz", "https://cloud.r-project.org/src/contrib/strucchange_1.5-2.tar.gz", "https://cloud.r-project.org/src/contrib/strucchange_1.5-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=strucchange" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-strucchange", "patches": [], "summary": "Testing, Monitoring, and Dating Structural Changes. Testing, monitoring\nand dating structural changes in (linear) regression models. strucchange\nfeatures tests/methods from the generalized fluctuation test framework\nas well as from the F test (Chow test) framework. This includes methods\nto fit, plot and test fluctuation processes (e.g., CUSUM, MOSUM,\nrecursive/moving estimates) and F statistics, respectively. It is\npossible to monitor incoming data online using fluctuation processes.\nFinally, the breakpoints in regression models with structural changes\ncan be estimated together with confidence intervals. Emphasis is always\ngiven to methods for visualizing the data.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/strucchange_1.5-1.tar.gz" ], "version": "1.5-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/strucchange_1.5-2.tar.gz" ], "version": "1.5-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/strucchange_1.5-3.tar.gz" ], "version": "1.5-3" } ] }, "r-strucchangercpp": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-rcpp", "r-rcpparmadillo", "r-sandwich", "r-zoo" ], "downloads": [ "https://cloud.r-project.org/src/contrib/strucchangeRcpp_1.5-3-1.0.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=strucchangeRcpp" ], "licenses": [], "maintainers": [], "name": "r-strucchangercpp", "patches": [], "summary": "Testing, Monitoring, and Dating Structural Changes: C++ Version. A fast\nimplementation with additional experimental features for testing,\nmonitoring and dating structural changes in (linear) regression models.\n'strucchangeRcpp' features tests/methods from the generalized\nfluctuation test framework as well as from the F test (Chow test)\nframework. This includes methods to fit, plot and test fluctuation\nprocesses (e.g. cumulative/moving sum, recursive/moving estimates) and F\nstatistics, respectively. These methods are described in Zeileis et al.\n(2002) . Finally, the breakpoints in\nregression models with structural changes can be estimated together with\nconfidence intervals, and their magnitude as well as the model fit can\nbe evaluated using a variety of statistical measures.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/strucchangeRcpp_1.5-3-1.0.4.tar.gz" ], "version": "1.5-3-1.0.4" } ] }, "r-styler": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-backports", "r-cli", "r-glue", "r-magrittr", "r-purrr", "r-r-cache", "r-rematch2", "r-rlang", "r-rprojroot", "r-tibble", "r-vctrs", "r-withr", "r-xfun" ], "downloads": [ "https://cloud.r-project.org/src/contrib/styler_1.10.3.tar.gz", "https://cloud.r-project.org/src/contrib/styler_1.9.1.tar.gz", "https://cloud.r-project.org/src/contrib/styler_1.8.1.tar.gz", "https://cloud.r-project.org/src/contrib/styler_1.8.0.tar.gz", "https://cloud.r-project.org/src/contrib/styler_1.7.0.tar.gz", "https://cloud.r-project.org/src/contrib/styler_1.6.2.tar.gz", "https://cloud.r-project.org/src/contrib/styler_1.3.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=styler" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-styler", "patches": [], "summary": "Non-Invasive Pretty Printing of R Code. Pretty-prints R code without\nchanging the user's formatting intent.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/styler_1.10.3.tar.gz" ], "version": "1.10.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/styler_1.3.2.tar.gz" ], "version": "1.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/styler_1.6.2.tar.gz" ], "version": "1.6.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/styler_1.7.0.tar.gz" ], "version": "1.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/styler_1.8.0.tar.gz" ], "version": "1.8.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/styler_1.8.1.tar.gz" ], "version": "1.8.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/styler_1.9.1.tar.gz" ], "version": "1.9.1" } ] }, "r-subplex": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/subplex_1.9.tar.gz", "https://cloud.r-project.org/src/contrib/subplex_1.8.tar.gz", "https://cloud.r-project.org/src/contrib/subplex_1.7.tar.gz", "https://cloud.r-project.org/src/contrib/subplex_1.6.tar.gz", "https://cloud.r-project.org/src/contrib/subplex_1.5-4.tar.gz", "https://cloud.r-project.org/src/contrib/subplex_1.5-2.tar.gz", "https://cloud.r-project.org/src/contrib/subplex_1.4-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=subplex" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-subplex", "patches": [], "summary": "Unconstrained Optimization using the Subplex Algorithm. The subplex\nalgorithm for unconstrained optimization, developed by Tom Rowan\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/subplex_1.4-1.tar.gz" ], "version": "1.4-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/subplex_1.5-2.tar.gz" ], "version": "1.5-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/subplex_1.5-4.tar.gz" ], "version": "1.5-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/subplex_1.6.tar.gz" ], "version": "1.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/subplex_1.7.tar.gz" ], "version": "1.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/subplex_1.8.tar.gz" ], "version": "1.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/subplex_1.9.tar.gz" ], "version": "1.9" } ] }, "r-summarizedexperiment": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-biobase", "r-biocgenerics", "r-delayedarray", "r-genomeinfodb", "r-genomicranges", "r-iranges", "r-matrix", "r-matrixgenerics", "r-s4vectors" ], "downloads": [ "https://git.bioconductor.org/packages/SummarizedExperiment" ], "homepages": [ "https://bioconductor.org/packages/SummarizedExperiment" ], "licenses": [], "maintainers": [], "name": "r-summarizedexperiment", "patches": [], "summary": "SummarizedExperiment container. The SummarizedExperiment container\ncontains one or more assays, each represented by a matrix-like object of\nnumeric or other mode. The rows typically represent genomic ranges of\ninterest and the columns represent samples.\n", "version": [ { "repositories": [ { "commit": "7ad2e991c8285bfc4b2e15b29d94cc86d07f8f2b", "type": "git", "url": "https://git.bioconductor.org/packages/SummarizedExperiment" } ], "version": "1.10.1" }, { "repositories": [ { "commit": "5f8416864636add121ec1d6737ebb89a42227fd7", "type": "git", "url": "https://git.bioconductor.org/packages/SummarizedExperiment" } ], "version": "1.12.0" }, { "repositories": [ { "commit": "2c68d99e11c7345e5ed388370822ea48395c64a4", "type": "git", "url": "https://git.bioconductor.org/packages/SummarizedExperiment" } ], "version": "1.14.1" }, { "repositories": [ { "commit": "e22fafe8c314b4e216fb130012d631b4626bc605", "type": "git", "url": "https://git.bioconductor.org/packages/SummarizedExperiment" } ], "version": "1.18.2" }, { "repositories": [ { "commit": "874aa87a481e4076a0ec3369f55c9c0a1ab8025e", "type": "git", "url": "https://git.bioconductor.org/packages/SummarizedExperiment" } ], "version": "1.20.0" }, { "repositories": [ { "commit": "d37f19383d03c107a8a41c0df2326e28efe46b28", "type": "git", "url": "https://git.bioconductor.org/packages/SummarizedExperiment" } ], "version": "1.24.0" }, { "repositories": [ { "commit": "c8cbd3b4f0fa1d686c4d7ce5b8614a24c74b2074", "type": "git", "url": "https://git.bioconductor.org/packages/SummarizedExperiment" } ], "version": "1.26.1" }, { "repositories": [ { "commit": "ba55dac12224f0aafe8f52f1397611b5efb41626", "type": "git", "url": "https://git.bioconductor.org/packages/SummarizedExperiment" } ], "version": "1.28.0" }, { "repositories": [ { "commit": "a2843fbced9fc345c9061b2e52244f3263326e2e", "type": "git", "url": "https://git.bioconductor.org/packages/SummarizedExperiment" } ], "version": "1.30.0" }, { "repositories": [ { "commit": "ec69cd5cfbccaef148a9f6abdfb3e22e888695d0", "type": "git", "url": "https://git.bioconductor.org/packages/SummarizedExperiment" } ], "version": "1.6.5" }, { "repositories": [ { "commit": "9d8a29aa9c78bbc7dcc6472537e13fc0d11dc1f7", "type": "git", "url": "https://git.bioconductor.org/packages/SummarizedExperiment" } ], "version": "1.8.1" } ] }, "r-suppdists": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/SuppDists_1.1-9.7.tar.gz", "https://cloud.r-project.org/src/contrib/SuppDists_1.1-9.5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=SuppDists" ], "licenses": [], "maintainers": [], "name": "r-suppdists", "patches": [], "summary": "Supplementary Distributions. Ten distributions supplementing those built\ninto R. Inverse Gauss, Kruskal-Wallis, Kendall's Tau, Friedman's chi\nsquared, Spearman's rho, maximum F ratio, the Pearson product moment\ncorrelation coefficient, Johnson distributions, normal scores and\ngeneralized hypergeometric distributions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/SuppDists_1.1-9.5.tar.gz" ], "version": "1.1-9.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/SuppDists_1.1-9.7.tar.gz" ], "version": "1.1-9.7" } ] }, "r-survey": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-lattice", "r-matrix", "r-minqa", "r-mitools", "r-numderiv", "r-rcpp", "r-rcpparmadillo", "r-survival" ], "downloads": [ "https://cloud.r-project.org/src/contrib/survey_4.4-2.tar.gz", "https://cloud.r-project.org/src/contrib/survey_4.1-1.tar.gz", "https://cloud.r-project.org/src/contrib/survey_4.0.tar.gz", "https://cloud.r-project.org/src/contrib/survey_3.36.tar.gz", "https://cloud.r-project.org/src/contrib/survey_3.35-1.tar.gz", "https://cloud.r-project.org/src/contrib/survey_3.30-3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=survey" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-survey", "patches": [], "summary": "Analysis of Complex Survey Samples. Summary statistics, two-sample\ntests, rank tests, generalised linear models, cumulative link models,\nCox models, loglinear models, and general maximum pseudolikelihood\nestimation for multistage stratified, cluster-sampled, unequally\nweighted survey samples. Variances by Taylor series linearisation or\nreplicate weights. Post-stratification, calibration, and raking. Two-\nphase subsampling designs. Graphics. PPS sampling without replacement.\nPrincipal components, factor analysis.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/survey_3.30-3.tar.gz" ], "version": "3.30-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/survey_3.35-1.tar.gz" ], "version": "3.35-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/survey_3.36.tar.gz" ], "version": "3.36" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/survey_4.0.tar.gz" ], "version": "4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/survey_4.1-1.tar.gz" ], "version": "4.1-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/survey_4.4-2.tar.gz" ], "version": "4.4-2" } ] }, "r-survival": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-matrix" ], "downloads": [ "https://cloud.r-project.org/src/contrib/survival_3.8-3.tar.gz", "https://cloud.r-project.org/src/contrib/survival_3.7-0.tar.gz", "https://cloud.r-project.org/src/contrib/survival_3.5-5.tar.gz", "https://cloud.r-project.org/src/contrib/survival_3.4-0.tar.gz", "https://cloud.r-project.org/src/contrib/survival_3.3-1.tar.gz", "https://cloud.r-project.org/src/contrib/survival_3.2-13.tar.gz", "https://cloud.r-project.org/src/contrib/survival_3.2-7.tar.gz", "https://cloud.r-project.org/src/contrib/survival_3.1-12.tar.gz", "https://cloud.r-project.org/src/contrib/survival_2.44-1.1.tar.gz", "https://cloud.r-project.org/src/contrib/survival_2.44-1.tar.gz", "https://cloud.r-project.org/src/contrib/survival_2.41-3.tar.gz", "https://cloud.r-project.org/src/contrib/survival_2.40-1.tar.gz", "https://cloud.r-project.org/src/contrib/survival_2.39-5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=survival" ], "licenses": [ "LGPL-2.0-or-later" ], "maintainers": [], "name": "r-survival", "patches": [], "summary": "Survival Analysis. Contains the core survival analysis routines,\nincluding definition of Surv objects, Kaplan-Meier and Aalen-Johansen\n(multi-state) curves, Cox models, and parametric accelerated failure\ntime models.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/survival_2.39-5.tar.gz" ], "version": "2.39-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/survival_2.40-1.tar.gz" ], "version": "2.40-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/survival_2.41-3.tar.gz" ], "version": "2.41-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/survival_2.44-1.tar.gz" ], "version": "2.44-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/survival_2.44-1.1.tar.gz" ], "version": "2.44-1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/survival_3.1-12.tar.gz" ], "version": "3.1-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/survival_3.2-13.tar.gz" ], "version": "3.2-13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/survival_3.2-7.tar.gz" ], "version": "3.2-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/survival_3.3-1.tar.gz" ], "version": "3.3-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/survival_3.4-0.tar.gz" ], "version": "3.4-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/survival_3.5-5.tar.gz" ], "version": "3.5-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/survival_3.7-0.tar.gz" ], "version": "3.7-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/survival_3.8-3.tar.gz" ], "version": "3.8-3" } ] }, "r-sva": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-biocparallel", "r-edger", "r-genefilter", "r-limma", "r-matrixstats", "r-mgcv" ], "downloads": [ "https://git.bioconductor.org/packages/sva" ], "homepages": [ "https://bioconductor.org/packages/sva" ], "licenses": [], "maintainers": [], "name": "r-sva", "patches": [], "summary": "Surrogate Variable Analysis. The sva package contains functions for\nremoving batch effects and other unwanted variation in high-throughput\nexperiment. Specifically, the sva package contains functions for the\nidentifying and building surrogate variables for high-dimensional data\nsets. Surrogate variables are covariates constructed directly from high-\ndimensional data (like gene expression/RNA sequencing/methylation/brain\nimaging data) that can be used in subsequent analyses to adjust for\nunknown, unmodeled, or latent sources of noise. The sva package can be\nused to remove artifacts in three ways: (1) identifying and estimating\nsurrogate variables for unknown sources of variation in high-throughput\nexperiments (Leek and Storey 2007 PLoS Genetics,2008 PNAS), (2) directly\nremoving known batch effects using ComBat (Johnson et al. 2007\nBiostatistics) and (3) removing batch effects with known control probes\n(Leek 2014 biorXiv). Removing batch effects and using surrogate\nvariables in differential expression analysis have been shown to reduce\ndependence, stabilize error rate estimates, and improve reproducibility,\nsee (Leek and Storey 2007 PLoS Genetics, 2008 PNAS or Leek et al. 2011\nNat. Reviews Genetics).\n", "version": [ { "repositories": [ { "commit": "ed2ebb6e33374dc9ec50e6ea97cc1d9aef836c73", "type": "git", "url": "https://git.bioconductor.org/packages/sva" } ], "version": "3.24.4" }, { "repositories": [ { "commit": "3cc5e75413c35ed5511892f5c36a8b5cb454937e", "type": "git", "url": "https://git.bioconductor.org/packages/sva" } ], "version": "3.26.0" }, { "repositories": [ { "commit": "dd4937229dbccd2f383a04d5237fe147a884728d", "type": "git", "url": "https://git.bioconductor.org/packages/sva" } ], "version": "3.28.0" }, { "repositories": [ { "commit": "fdb98bc2299dc5213c62d83cb7c0b1c1b4912f0c", "type": "git", "url": "https://git.bioconductor.org/packages/sva" } ], "version": "3.30.1" }, { "repositories": [ { "commit": "1b8286734d00533b49d9f1456b6523cc778bb744", "type": "git", "url": "https://git.bioconductor.org/packages/sva" } ], "version": "3.32.1" }, { "repositories": [ { "commit": "5ded8ba649200ec4829051f86a59e1a2548a7ab8", "type": "git", "url": "https://git.bioconductor.org/packages/sva" } ], "version": "3.38.0" }, { "repositories": [ { "commit": "54c843cc46437be233ecb43b6aa868e968d71138", "type": "git", "url": "https://git.bioconductor.org/packages/sva" } ], "version": "3.42.0" }, { "repositories": [ { "commit": "45ab2c1d6643bcda4de2d95a81b9b28d33a1a8a1", "type": "git", "url": "https://git.bioconductor.org/packages/sva" } ], "version": "3.44.0" }, { "repositories": [ { "commit": "4aac49cf806f05bb98e08a6be539adebbecbfdb2", "type": "git", "url": "https://git.bioconductor.org/packages/sva" } ], "version": "3.46.0" }, { "repositories": [ { "commit": "f1657af586d402598df71ade10dfeb28aa28b5c4", "type": "git", "url": "https://git.bioconductor.org/packages/sva" } ], "version": "3.48.0" } ] }, "r-svglite": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "libpng", "r", "r-cpp11", "r-systemfonts" ], "downloads": [ "https://cloud.r-project.org/src/contrib/svglite_2.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/svglite_2.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/svglite_2.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/svglite_2.0.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=svglite" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-svglite", "patches": [], "summary": "An 'SVG' Graphics Device. A graphics device for R that produces\n'Scalable Vector Graphics'. 'svglite' is a fork of the older\n'RSvgDevice' package.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/svglite_2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/svglite_2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/svglite_2.1.1.tar.gz" ], "version": "2.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/svglite_2.1.3.tar.gz" ], "version": "2.1.3" } ] }, "r-sys": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/sys_3.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/sys_3.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/sys_3.4.tar.gz", "https://cloud.r-project.org/src/contrib/sys_3.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=sys" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-sys", "patches": [], "summary": "Powerful and Reliable Tools for Running System Commands in R. Drop-in\nreplacements for the base system2() function with fine control and\nconsistent behavior across platforms. Supports clean interruption,\ntimeout, background tasks, and streaming STDIN / STDOUT / STDERR over\nbinary or text connections. Arguments on Windows automatically get\nencoded and quoted to work on different locales.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/sys_3.2.tar.gz" ], "version": "3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sys_3.4.tar.gz" ], "version": "3.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sys_3.4.1.tar.gz" ], "version": "3.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/sys_3.4.2.tar.gz" ], "version": "3.4.2" } ] }, "r-systemfonts": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "fontconfig", "freetype", "gmake", "r", "r-base64enc", "r-cpp11", "r-jsonlite", "r-lifecycle" ], "downloads": [ "https://cloud.r-project.org/src/contrib/systemfonts_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/systemfonts_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/systemfonts_1.0.4.tar.gz", "https://cloud.r-project.org/src/contrib/systemfonts_1.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/systemfonts_1.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=systemfonts" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-systemfonts", "patches": [], "summary": "System Native Font Finding. Provides system native access to the font\ncatalogue. As font handling varies between systems it is difficult to\ncorrectly locate installed fonts across different operating systems. The\n'systemfonts' package provides bindings to the native libraries on\nWindows, macOS and Linux for finding font files that can then be used\nfurther by e.g. graphic devices. The main use is intended to be from\ncompiled code but 'systemfonts' also provides access from R.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/systemfonts_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/systemfonts_1.0.3.tar.gz" ], "version": "1.0.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/systemfonts_1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/systemfonts_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/systemfonts_1.3.1.tar.gz" ], "version": "1.3.1" } ] }, "r-tarifx": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-plyr", "r-reshape2" ], "downloads": [ "https://cloud.r-project.org/src/contrib/taRifx_1.0.6.2.tar.gz", "https://cloud.r-project.org/src/contrib/taRifx_1.0.6.1.tar.gz", "https://cloud.r-project.org/src/contrib/taRifx_1.0.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=taRifx" ], "licenses": [], "maintainers": [], "name": "r-tarifx", "patches": [], "summary": "Collection of Utility and Convenience Functions. A collection of various\nutility and convenience functions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/taRifx_1.0.6.tar.gz" ], "version": "1.0.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/taRifx_1.0.6.1.tar.gz" ], "version": "1.0.6.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/taRifx_1.0.6.2.tar.gz" ], "version": "1.0.6.2" } ] }, "r-taxizedb": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-curl", "r-dbi", "r-dbplyr", "r-dplyr", "r-hoardr", "r-magrittr", "r-readr", "r-rlang", "r-rmysql", "r-rpostgresql", "r-rsqlite", "r-tibble" ], "downloads": [ "https://cloud.r-project.org/src/contrib/taxizedb_0.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/taxizedb_0.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/taxizedb_0.1.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=taxizedb" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-taxizedb", "patches": [], "summary": "Tools for Working with 'Taxonomic' Databases. Tools for working with\n'taxonomic' databases, including utilities for downloading databases,\nloading them into various 'SQL' databases, cleaning up files, and\nproviding a 'SQL' connection that can be used to do 'SQL' queries\ndirectly or used in 'dplyr'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/taxizedb_0.1.4.tar.gz" ], "version": "0.1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/taxizedb_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/taxizedb_0.3.1.tar.gz" ], "version": "0.3.1" } ] }, "r-tclust": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-doparallel", "r-foreach", "r-mass", "r-rcpp", "r-rcpparmadillo" ], "downloads": [ "https://cloud.r-project.org/src/contrib/tclust_2.0-4.tar.gz", "https://cloud.r-project.org/src/contrib/tclust_1.5-4.tar.gz", "https://cloud.r-project.org/src/contrib/tclust_1.5-2.tar.gz", "https://cloud.r-project.org/src/contrib/tclust_1.5-1.tar.gz", "https://cloud.r-project.org/src/contrib/tclust_1.4-2.tar.gz", "https://cloud.r-project.org/src/contrib/tclust_1.4-1.tar.gz", "https://cloud.r-project.org/src/contrib/tclust_1.3-1.tar.gz", "https://cloud.r-project.org/src/contrib/tclust_1.2-7.tar.gz", "https://cloud.r-project.org/src/contrib/tclust_1.2-3.tar.gz", "https://cloud.r-project.org/src/contrib/tclust_1.1-03.tar.gz", "https://cloud.r-project.org/src/contrib/tclust_1.1-02.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=tclust" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-tclust", "patches": [], "summary": "Robust Trimmed Clustering. Provides functions for robust trimmed\nclustering. The methods are described in Garcia-Escudero (2008)\n, Fritz et al. (2012)\n, Garcia-Escudero et al. (2011)\n and others.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/tclust_1.1-02.tar.gz" ], "version": "1.1-02" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tclust_1.1-03.tar.gz" ], "version": "1.1-03" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tclust_1.2-3.tar.gz" ], "version": "1.2-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tclust_1.2-7.tar.gz" ], "version": "1.2-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tclust_1.3-1.tar.gz" ], "version": "1.3-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tclust_1.4-1.tar.gz" ], "version": "1.4-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tclust_1.4-2.tar.gz" ], "version": "1.4-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tclust_1.5-1.tar.gz" ], "version": "1.5-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tclust_1.5-2.tar.gz" ], "version": "1.5-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tclust_1.5-4.tar.gz" ], "version": "1.5-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tclust_2.0-4.tar.gz" ], "version": "2.0-4" } ] }, "r-teachingdemos": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/TeachingDemos_2.13.tar.gz", "https://cloud.r-project.org/src/contrib/TeachingDemos_2.12.tar.gz", "https://cloud.r-project.org/src/contrib/TeachingDemos_2.10.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=TeachingDemos" ], "licenses": [], "maintainers": [], "name": "r-teachingdemos", "patches": [], "summary": "Demonstrations for Teaching and Learning. Demonstration functions that\ncan be used in a classroom to demonstrate statistical concepts, or on\nyour own to better understand the concepts or the programming.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/TeachingDemos_2.10.tar.gz" ], "version": "2.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/TeachingDemos_2.12.tar.gz" ], "version": "2.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/TeachingDemos_2.13.tar.gz" ], "version": "2.13" } ] }, "r-tensor": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/tensor_1.5.tar.gz", "https://cloud.r-project.org/src/contrib/tensor_1.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=tensor" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-tensor", "patches": [], "summary": "Tensor product of arrays. The tensor product of two arrays is notionally\nan outer product of the arrays collapsed in specific extents by summing\nalong the appropriate diagonals.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/tensor_1.4.tar.gz" ], "version": "1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tensor_1.5.tar.gz" ], "version": "1.5" } ] }, "r-tensora": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/tensorA_0.36.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/tensorA_0.36.2.tar.gz", "https://cloud.r-project.org/src/contrib/tensorA_0.36.1.tar.gz", "https://cloud.r-project.org/src/contrib/tensorA_0.36.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=tensorA" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-tensora", "patches": [], "summary": "Advanced Tensor Arithmetic with Named Indices. Provides convenience\nfunctions for advanced linear algebra with tensors and computation with\ndata sets of tensors on a higher level abstraction. It includes Einstein\nand Riemann summing conventions, dragging, co- and contravariate\nindices, parallel computations on sequences of tensors.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/tensorA_0.36.tar.gz" ], "version": "0.36" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tensorA_0.36.1.tar.gz" ], "version": "0.36.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tensorA_0.36.2.tar.gz" ], "version": "0.36.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tensorA_0.36.2.1.tar.gz" ], "version": "0.36.2.1" } ] }, "r-terra": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gdal", "geos", "gmake", "proj", "r", "r-rcpp", "sqlite" ], "downloads": [ "https://cloud.r-project.org/src/contrib/terra_1.7-78.tar.gz", "https://cloud.r-project.org/src/contrib/terra_1.7-29.tar.gz", "https://cloud.r-project.org/src/contrib/terra_1.6-17.tar.gz", "https://cloud.r-project.org/src/contrib/terra_1.5-21.tar.gz", "https://cloud.r-project.org/src/contrib/terra_1.5-17.tar.gz", "https://cloud.r-project.org/src/contrib/terra_1.5-12.tar.gz", "https://cloud.r-project.org/src/contrib/terra_1.4-22.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=terra" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-terra", "patches": [], "summary": "Spatial Data Analysis. Methods for spatial data analysis with raster and\nvector data. Raster methods allow for low-level data manipulation as\nwell as high-level global, local, zonal, and focal computation. The\npredict and interpolate methods facilitate the use of regression type\n(interpolation, machine learning) models for spatial prediction,\nincluding with satellite remote sensing data. Processing of very large\nfiles is supported. See the manual and tutorials on\n to get started. 'terra' is very similar to\nthe 'raster' package; but 'terra' can do more, is easier to use, and it\nis faster.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/terra_1.4-22.tar.gz" ], "version": "1.4-22" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/terra_1.5-12.tar.gz" ], "version": "1.5-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/terra_1.5-17.tar.gz" ], "version": "1.5-17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/terra_1.5-21.tar.gz" ], "version": "1.5-21" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/terra_1.6-17.tar.gz" ], "version": "1.6-17" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/terra_1.7-29.tar.gz" ], "version": "1.7-29" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/terra_1.7-78.tar.gz" ], "version": "1.7-78" } ] }, "r-tester": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/tester_0.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/tester_0.1.7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=tester" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-tester", "patches": [], "summary": "Tests and checks characteristics of R objects. tester allows you to test\ncharacteristics of common R objects.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/tester_0.1.7.tar.gz" ], "version": "0.1.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tester_0.2.0.tar.gz" ], "version": "0.2.0" } ] }, "r-testit": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/testit_0.13.tar.gz", "https://cloud.r-project.org/src/contrib/testit_0.12.tar.gz", "https://cloud.r-project.org/src/contrib/testit_0.9.tar.gz", "https://cloud.r-project.org/src/contrib/testit_0.8.tar.gz", "https://cloud.r-project.org/src/contrib/testit_0.7.tar.gz", "https://cloud.r-project.org/src/contrib/testit_0.5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=testit" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-testit", "patches": [], "summary": "A Simple Package for Testing R Packages. Provides two convenience\nfunctions assert() and test_pkg() to facilitate testing R packages.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/testit_0.12.tar.gz" ], "version": "0.12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/testit_0.13.tar.gz" ], "version": "0.13" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/testit_0.5.tar.gz" ], "version": "0.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/testit_0.7.tar.gz" ], "version": "0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/testit_0.8.tar.gz" ], "version": "0.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/testit_0.9.tar.gz" ], "version": "0.9" } ] }, "r-testthat": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-brio", "r-callr", "r-cli", "r-crayon", "r-desc", "r-digest", "r-ellipsis", "r-evaluate", "r-jsonlite", "r-lifecycle", "r-magrittr", "r-pkgload", "r-praise", "r-processx", "r-ps", "r-r6", "r-rlang", "r-waldo", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/testthat_3.2.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/testthat_3.1.7.tar.gz", "https://cloud.r-project.org/src/contrib/testthat_3.1.5.tar.gz", "https://cloud.r-project.org/src/contrib/testthat_3.1.4.tar.gz", "https://cloud.r-project.org/src/contrib/testthat_3.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/testthat_3.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/testthat_3.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/testthat_2.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/testthat_2.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/testthat_2.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/testthat_1.0.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=testthat" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-testthat", "patches": [], "summary": "Unit Testing for R. Software testing is important, but, in part because\nit is frustrating and boring, many of us avoid it. 'testthat' is a\ntesting framework for R that is easy to learn and use, and integrates\nwith your existing 'workflow'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/testthat_1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/testthat_2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/testthat_2.2.1.tar.gz" ], "version": "2.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/testthat_2.3.2.tar.gz" ], "version": "2.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/testthat_3.0.1.tar.gz" ], "version": "3.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/testthat_3.1.1.tar.gz" ], "version": "3.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/testthat_3.1.2.tar.gz" ], "version": "3.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/testthat_3.1.4.tar.gz" ], "version": "3.1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/testthat_3.1.5.tar.gz" ], "version": "3.1.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/testthat_3.1.7.tar.gz" ], "version": "3.1.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/testthat_3.2.1.1.tar.gz" ], "version": "3.2.1.1" } ] }, "r-textshaping": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "freetype", "fribidi", "gmake", "harfbuzz", "pkgconfig", "r", "r-cpp11", "r-lifecycle", "r-systemfonts" ], "downloads": [ "https://cloud.r-project.org/src/contrib/textshaping_0.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/textshaping_0.3.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=textshaping" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-textshaping", "patches": [], "summary": "Bindings to the 'HarfBuzz' and 'Fribidi' Libraries for Text Shaping.\nProvides access to the text shaping functionality in the 'HarfBuzz'\nlibrary and the bidirectional algorithm in the 'Fribidi' library.\n'textshaping' is a low-level utility package mainly for graphic devices\nthat expands upon the font tool-set provided by the 'systemfonts'\npackage.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/textshaping_0.3.6.tar.gz" ], "version": "0.3.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/textshaping_0.4.0.tar.gz" ], "version": "0.4.0" } ] }, "r-tfbstools": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-biobase", "r-biocgenerics", "r-biocparallel", "r-biostrings", "r-bsgenome", "r-catools", "r-cner", "r-dbi", "r-dirichletmultinomial", "r-genomeinfodb", "r-genomicranges", "r-gtools", "r-iranges", "r-rsqlite", "r-rtracklayer", "r-s4vectors", "r-seqlogo", "r-tfmpvalue", "r-xml", "r-xvector" ], "downloads": [ "https://git.bioconductor.org/packages/TFBSTools" ], "homepages": [ "https://bioconductor.org/packages/TFBSTools" ], "licenses": [], "maintainers": [], "name": "r-tfbstools", "patches": [], "summary": "Software Package for Transcription Factor Binding Site (TFBS) Analysis.\nTFBSTools is a package for the analysis and manipulation of\ntranscription factor binding sites. It includes matrices conversion\nbetween Position Frequency Matirx (PFM), Position Weight Matirx (PWM)\nand Information Content Matrix (ICM). It can also scan putative TFBS\nfrom sequence/alignment, query JASPAR database and provides a wrapper of\nde novo motif discovery software.\n", "version": [ { "repositories": [ { "commit": "e429fdefb6f7ee4585dd2a8ca3d0ced7a5bed4ff", "type": "git", "url": "https://git.bioconductor.org/packages/TFBSTools" } ], "version": "1.14.2" }, { "repositories": [ { "commit": "565436a5a674d4dea7279e796a20c5bd2034f65a", "type": "git", "url": "https://git.bioconductor.org/packages/TFBSTools" } ], "version": "1.16.0" }, { "repositories": [ { "commit": "17e12b9f3dcb9059d414307ec0bc23ed1ee33294", "type": "git", "url": "https://git.bioconductor.org/packages/TFBSTools" } ], "version": "1.18.0" }, { "repositories": [ { "commit": "74035fc6beb1af82f171c11ef2b0a8817714c5bc", "type": "git", "url": "https://git.bioconductor.org/packages/TFBSTools" } ], "version": "1.20.0" }, { "repositories": [ { "commit": "613d3567fd662b65269bd200c5aa5f87ac6a4612", "type": "git", "url": "https://git.bioconductor.org/packages/TFBSTools" } ], "version": "1.22.0" }, { "repositories": [ { "commit": "15e7cf76f39ee3280a27284d58f7adef1c33f193", "type": "git", "url": "https://git.bioconductor.org/packages/TFBSTools" } ], "version": "1.28.0" }, { "repositories": [ { "commit": "235505626b910de29156a07e1f990daa3b5d57d9", "type": "git", "url": "https://git.bioconductor.org/packages/TFBSTools" } ], "version": "1.32.0" }, { "repositories": [ { "commit": "7f8d0cb58a527a5d7ba94a773279f13aedca6ec7", "type": "git", "url": "https://git.bioconductor.org/packages/TFBSTools" } ], "version": "1.34.0" }, { "repositories": [ { "commit": "3358c89227a4d2e237ee5f8c532f468460a16ee2", "type": "git", "url": "https://git.bioconductor.org/packages/TFBSTools" } ], "version": "1.36.0" }, { "repositories": [ { "commit": "2ce17166b6f73b5093acec2a3dde33b6bcfa56bc", "type": "git", "url": "https://git.bioconductor.org/packages/TFBSTools" } ], "version": "1.38.0" } ] }, "r-tfisher": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-matrix", "r-mvtnorm", "r-sn" ], "downloads": [ "https://cloud.r-project.org/src/contrib/TFisher_0.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=TFisher" ], "licenses": [], "maintainers": [], "name": "r-tfisher", "patches": [], "summary": "Optimal Thresholding Fisher's P-Value Combination Method. We provide the\ncumulative distribution function (CDF), quantile, and statistical power\ncalculator for a collection of thresholding Fisher's p-value combination\nmethods, including Fisher's p-value combination method, truncated\nproduct method and, in particular, soft-thresholding Fisher's p-value\ncombination method which is proven to be optimal in some context of\nsignal detection. The p-value calculator for the omnibus version of\nthese tests are also included. For reference, please see Hong Zhang and\nZheyang Wu. \"TFisher Tests: Optimal and Adaptive Thresholding for\nCombining p-Values\", submitted.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/TFisher_0.2.0.tar.gz" ], "version": "0.2.0" } ] }, "r-tfmpvalue": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/TFMPvalue_0.0.9.tar.gz", "https://cloud.r-project.org/src/contrib/TFMPvalue_0.0.8.tar.gz", "https://cloud.r-project.org/src/contrib/TFMPvalue_0.0.6.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=TFMPvalue" ], "licenses": [], "maintainers": [], "name": "r-tfmpvalue", "patches": [], "summary": "Efficient and Accurate P-Value Computation for Position Weight Matrices.\nIn putative Transcription Factor Binding Sites (TFBSs) identification\nfrom sequence/alignments, we are interested in the significance of\ncertain match score. TFMPvalue provides the accurate calculation of\nP-value with score threshold for Position Weight Matrices, or the score\nwith given P-value. This package is an interface to code originally made\navailable by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol\nBiol:2, 15.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/TFMPvalue_0.0.6.tar.gz" ], "version": "0.0.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/TFMPvalue_0.0.8.tar.gz" ], "version": "0.0.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/TFMPvalue_0.0.9.tar.gz" ], "version": "0.0.9" } ] }, "r-th-data": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-mass", "r-survival" ], "downloads": [ "https://cloud.r-project.org/src/contrib/TH.data_1.1-2.tar.gz", "https://cloud.r-project.org/src/contrib/TH.data_1.1-1.tar.gz", "https://cloud.r-project.org/src/contrib/TH.data_1.1-0.tar.gz", "https://cloud.r-project.org/src/contrib/TH.data_1.0-10.tar.gz", "https://cloud.r-project.org/src/contrib/TH.data_1.0-9.tar.gz", "https://cloud.r-project.org/src/contrib/TH.data_1.0-8.tar.gz", "https://cloud.r-project.org/src/contrib/TH.data_1.0-7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=TH.data" ], "licenses": [], "maintainers": [], "name": "r-th-data", "patches": [], "summary": "TH's Data Archive. Contains data sets used in other packages Torsten\nHothorn maintains.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/TH.data_1.0-10.tar.gz" ], "version": "1.0-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/TH.data_1.0-7.tar.gz" ], "version": "1.0-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/TH.data_1.0-8.tar.gz" ], "version": "1.0-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/TH.data_1.0-9.tar.gz" ], "version": "1.0-9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/TH.data_1.1-0.tar.gz" ], "version": "1.1-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/TH.data_1.1-1.tar.gz" ], "version": "1.1-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/TH.data_1.1-2.tar.gz" ], "version": "1.1-2" } ] }, "r-threejs": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-base64enc", "r-crosstalk", "r-htmlwidgets", "r-igraph", "r-jsonlite", "r-matrix" ], "downloads": [ "https://cloud.r-project.org/src/contrib/threejs_0.3.3.tar.gz", "https://cloud.r-project.org/src/contrib/threejs_0.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/threejs_0.2.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=threejs" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-threejs", "patches": [], "summary": "Interactive 3D Scatter Plots, Networks and Globes. Create interactive 3D\nscatter plots, network plots, and globes using the 'three.js'\nvisualization library (\"https://threejs.org/\").\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/threejs_0.2.2.tar.gz" ], "version": "0.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/threejs_0.3.1.tar.gz" ], "version": "0.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/threejs_0.3.3.tar.gz" ], "version": "0.3.3" } ] }, "r-tibble": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-assertthat", "r-cli", "r-crayon", "r-ellipsis", "r-fansi", "r-lazyeval", "r-lifecycle", "r-magrittr", "r-pillar", "r-pkgconfig", "r-rcpp", "r-rlang", "r-vctrs" ], "downloads": [ "https://cloud.r-project.org/src/contrib/tibble_3.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/tibble_3.1.8.tar.gz", "https://cloud.r-project.org/src/contrib/tibble_3.1.7.tar.gz", "https://cloud.r-project.org/src/contrib/tibble_3.1.6.tar.gz", "https://cloud.r-project.org/src/contrib/tibble_3.1.5.tar.gz", "https://cloud.r-project.org/src/contrib/tibble_3.0.5.tar.gz", "https://cloud.r-project.org/src/contrib/tibble_2.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/tibble_2.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/tibble_2.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/tibble_1.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/tibble_1.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/tibble_1.3.4.tar.gz", "https://cloud.r-project.org/src/contrib/tibble_1.2.tar.gz", "https://cloud.r-project.org/src/contrib/tibble_1.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=tibble" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-tibble", "patches": [], "summary": "Simple Data Frames. Provides a 'tbl_df' class (the 'tibble') that\nprovides stricter checking and better formatting than the traditional\ndata frame.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/tibble_1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tibble_1.2.tar.gz" ], "version": "1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tibble_1.3.4.tar.gz" ], "version": "1.3.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tibble_1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tibble_1.4.2.tar.gz" ], "version": "1.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tibble_2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tibble_2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tibble_2.1.3.tar.gz" ], "version": "2.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tibble_3.0.5.tar.gz" ], "version": "3.0.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tibble_3.1.5.tar.gz" ], "version": "3.1.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tibble_3.1.6.tar.gz" ], "version": "3.1.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tibble_3.1.7.tar.gz" ], "version": "3.1.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tibble_3.1.8.tar.gz" ], "version": "3.1.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tibble_3.2.1.tar.gz" ], "version": "3.2.1" } ] }, "r-tictoc": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/tictoc_1.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/tictoc_1.2.tar.gz", "https://cloud.r-project.org/src/contrib/tictoc_1.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=tictoc" ], "licenses": [ "Apache-2.0 OR custom" ], "maintainers": [], "name": "r-tictoc", "patches": [], "summary": "Functions for timing R scripts, as well as implementations of Stack and\nList structures. This package provides the timing functions 'tic' and\n'toc' that can be nested. One can record all timings while a complex\nscript is running, and examine the values later. It is also possible to\ninstrument the timing calls with custom callbacks. In addition, this\npackage provides class 'Stack', implemented as a vector, and class\n'List', implemented as a list, both of which support operations 'push',\n'pop', 'first', 'last' and 'clear'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/tictoc_1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tictoc_1.2.tar.gz" ], "version": "1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tictoc_1.2.1.tar.gz" ], "version": "1.2.1" } ] }, "r-tidycensus": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-crayon", "r-dplyr", "r-httr", "r-jsonlite", "r-purrr", "r-rappdirs", "r-readr", "r-rlang", "r-rvest", "r-sf", "r-stringr", "r-tidyr", "r-tidyselect", "r-tigris", "r-units", "r-xml2" ], "downloads": [ "https://cloud.r-project.org/src/contrib/tidycensus_1.6.5.tar.gz", "https://cloud.r-project.org/src/contrib/tidycensus_1.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/tidycensus_1.2.3.tar.gz", "https://cloud.r-project.org/src/contrib/tidycensus_1.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/tidycensus_1.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/tidycensus_1.1.tar.gz", "https://cloud.r-project.org/src/contrib/tidycensus_0.11.tar.gz", "https://cloud.r-project.org/src/contrib/tidycensus_0.9.2.tar.gz", "https://cloud.r-project.org/src/contrib/tidycensus_0.3.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=tidycensus" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-tidycensus", "patches": [], "summary": "Load US Census Boundary and Attribute Data as 'tidyverse' and 'sf'-Ready\nData Frames. An integrated R interface to the decennial US Census and\nAmerican Community Survey APIs and the US Census Bureau's geographic\nboundary files. Allows R users to return Census and ACS data as\ntidyverse-ready data frames, and optionally returns a list-column with\nfeature geometry for all Census geographies.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/tidycensus_0.11.tar.gz" ], "version": "0.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidycensus_0.3.1.tar.gz" ], "version": "0.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidycensus_0.9.2.tar.gz" ], "version": "0.9.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidycensus_1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidycensus_1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidycensus_1.2.2.tar.gz" ], "version": "1.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidycensus_1.2.3.tar.gz" ], "version": "1.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidycensus_1.3.2.tar.gz" ], "version": "1.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidycensus_1.6.5.tar.gz" ], "version": "1.6.5" } ] }, "r-tidygraph": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-cli", "r-cpp11", "r-dplyr", "r-igraph", "r-lifecycle", "r-magrittr", "r-pillar", "r-r6", "r-rcpp", "r-rlang", "r-tibble", "r-tidyr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/tidygraph_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/tidygraph_1.2.3.tar.gz", "https://cloud.r-project.org/src/contrib/tidygraph_1.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/tidygraph_1.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/tidygraph_1.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/tidygraph_1.1.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=tidygraph" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-tidygraph", "patches": [], "summary": "A Tidy API for Graph Manipulation. A graph, while not \"tidy\" in itself,\ncan be thought of as two tidy data frames describing node and edge data\nrespectively. 'tidygraph' provides an approach to manipulate these two\nvirtual data frames using the API defined in the 'dplyr' package, as\nwell as provides tidy interfaces to a lot of common graph algorithms.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/tidygraph_1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidygraph_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidygraph_1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidygraph_1.2.2.tar.gz" ], "version": "1.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidygraph_1.2.3.tar.gz" ], "version": "1.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidygraph_1.3.1.tar.gz" ], "version": "1.3.1" } ] }, "r-tidyr": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-cli", "r-cpp11", "r-dplyr", "r-ellipsis", "r-glue", "r-lifecycle", "r-magrittr", "r-purrr", "r-rcpp", "r-rlang", "r-stringi", "r-stringr", "r-tibble", "r-tidyselect", "r-vctrs" ], "downloads": [ "https://cloud.r-project.org/src/contrib/tidyr_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/tidyr_1.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/tidyr_1.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/tidyr_1.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/tidyr_1.1.4.tar.gz", "https://cloud.r-project.org/src/contrib/tidyr_1.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/tidyr_0.8.3.tar.gz", "https://cloud.r-project.org/src/contrib/tidyr_0.8.2.tar.gz", "https://cloud.r-project.org/src/contrib/tidyr_0.7.2.tar.gz", "https://cloud.r-project.org/src/contrib/tidyr_0.5.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=tidyr" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-tidyr", "patches": [], "summary": "Tidy Messy Data. Tools to help to create tidy data, where each column is\na variable, each row is an observation, and each cell contains a single\nvalue. 'tidyr' contains tools for changing the shape (pivoting) and\nhierarchy (nesting and 'unnesting') of a dataset, turning deeply nested\nlists into rectangular data frames ('rectangling'), and extracting\nvalues out of string columns. It also includes tools for working with\nmissing values (both implicit and explicit).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyr_0.5.1.tar.gz" ], "version": "0.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyr_0.7.2.tar.gz" ], "version": "0.7.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyr_0.8.2.tar.gz" ], "version": "0.8.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyr_0.8.3.tar.gz" ], "version": "0.8.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyr_1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyr_1.1.4.tar.gz" ], "version": "1.1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyr_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyr_1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyr_1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyr_1.3.1.tar.gz" ], "version": "1.3.1" } ] }, "r-tidyselect": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-ellipsis", "r-glue", "r-lifecycle", "r-purrr", "r-rcpp", "r-rlang", "r-vctrs", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/tidyselect_1.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/tidyselect_1.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/tidyselect_1.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/tidyselect_1.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/tidyselect_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/tidyselect_0.2.5.tar.gz", "https://cloud.r-project.org/src/contrib/tidyselect_0.2.4.tar.gz", "https://cloud.r-project.org/src/contrib/tidyselect_0.2.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=tidyselect" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-tidyselect", "patches": [], "summary": "Select from a Set of Strings. A backend for the selecting functions of\nthe 'tidyverse'. It makes it easy to implement select-like functions in\nyour own packages in a way that is consistent with other 'tidyverse'\ninterfaces for selection.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyselect_0.2.3.tar.gz" ], "version": "0.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyselect_0.2.4.tar.gz" ], "version": "0.2.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyselect_0.2.5.tar.gz" ], "version": "0.2.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyselect_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyselect_1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyselect_1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyselect_1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyselect_1.2.1.tar.gz" ], "version": "1.2.1" } ] }, "r-tidytree": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ape", "r-cli", "r-dplyr", "r-lazyeval", "r-magrittr", "r-pillar", "r-rlang", "r-tibble", "r-tidyr", "r-tidyselect", "r-yulab-utils" ], "downloads": [ "https://cloud.r-project.org/src/contrib/tidytree_0.4.6.tar.gz", "https://cloud.r-project.org/src/contrib/tidytree_0.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/tidytree_0.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/tidytree_0.3.9.tar.gz", "https://cloud.r-project.org/src/contrib/tidytree_0.3.7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=tidytree" ], "licenses": [ "Artistic-2.0" ], "maintainers": [], "name": "r-tidytree", "patches": [], "summary": "A Tidy Tool for Phylogenetic Tree Data Manipulation. Phylogenetic tree\ngenerally contains multiple components including node, edge, branch and\nassociated data. 'tidytree' provides an approach to convert tree object\nto tidy data frame as well as provides tidy interfaces to manipulate\ntree data.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/tidytree_0.3.7.tar.gz" ], "version": "0.3.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidytree_0.3.9.tar.gz" ], "version": "0.3.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidytree_0.4.1.tar.gz" ], "version": "0.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidytree_0.4.2.tar.gz" ], "version": "0.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidytree_0.4.6.tar.gz" ], "version": "0.4.6" } ] }, "r-tidyverse": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-broom", "r-cli", "r-conflicted", "r-crayon", "r-dbplyr", "r-dplyr", "r-dtplyr", "r-forcats", "r-ggplot2", "r-googledrive", "r-googlesheets4", "r-haven", "r-hms", "r-httr", "r-jsonlite", "r-lubridate", "r-magrittr", "r-modelr", "r-pillar", "r-purrr", "r-ragg", "r-readr", "r-readxl", "r-reprex", "r-rlang", "r-rstudioapi", "r-rvest", "r-stringr", "r-tibble", "r-tidyr", "r-xml2" ], "downloads": [ "https://cloud.r-project.org/src/contrib/tidyverse_2.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/tidyverse_1.3.2.tar.gz", "https://cloud.r-project.org/src/contrib/tidyverse_1.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/tidyverse_1.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/tidyverse_1.2.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=tidyverse" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-tidyverse", "patches": [], "summary": "Easily Install and Load the 'Tidyverse'. The 'tidyverse' is a set of\npackages that work in harmony because they share common data\nrepresentations and 'API' design. This package is designed to make it\neasy to install and load multiple 'tidyverse' packages in a single step.\nLearn more about the 'tidyverse' at .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyverse_1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyverse_1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyverse_1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyverse_1.3.2.tar.gz" ], "version": "1.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tidyverse_2.0.0.tar.gz" ], "version": "2.0.0" } ] }, "r-tiff": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "jpeg", "libtiff", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/tiff_0.1-12.tar.gz", "https://cloud.r-project.org/src/contrib/tiff_0.1-11.tar.gz", "https://cloud.r-project.org/src/contrib/tiff_0.1-10.tar.gz", "https://cloud.r-project.org/src/contrib/tiff_0.1-6.tar.gz", "https://cloud.r-project.org/src/contrib/tiff_0.1-5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=tiff" ], "licenses": [ "GPL-2.0-only OR GPL-3.0-only" ], "maintainers": [], "name": "r-tiff", "patches": [], "summary": "Read and write TIFF images. This package provides an easy and simple way\nto read, write and display bitmap images stored in the TIFF format. It\ncan read and write both files and in-memory raw vectors.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/tiff_0.1-10.tar.gz" ], "version": "0.1-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tiff_0.1-11.tar.gz" ], "version": "0.1-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tiff_0.1-12.tar.gz" ], "version": "0.1-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tiff_0.1-5.tar.gz" ], "version": "0.1-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tiff_0.1-6.tar.gz" ], "version": "0.1-6" } ] }, "r-tigris": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-dplyr", "r-httr", "r-magrittr", "r-maptools", "r-rappdirs", "r-rgdal", "r-rgeos", "r-sf", "r-sp", "r-stringr", "r-uuid" ], "downloads": [ "https://cloud.r-project.org/src/contrib/tigris_2.1.tar.gz", "https://cloud.r-project.org/src/contrib/tigris_2.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/tigris_1.6.1.tar.gz", "https://cloud.r-project.org/src/contrib/tigris_1.6.tar.gz", "https://cloud.r-project.org/src/contrib/tigris_1.5.tar.gz", "https://cloud.r-project.org/src/contrib/tigris_1.0.tar.gz", "https://cloud.r-project.org/src/contrib/tigris_0.8.2.tar.gz", "https://cloud.r-project.org/src/contrib/tigris_0.5.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=tigris" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-tigris", "patches": [], "summary": "Load Census TIGER/Line Shapefiles. Download TIGER/Line shapefiles from\nthe United States Census Bureau and load into R as 'SpatialDataFrame' or\n'sf' objects.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/tigris_0.5.3.tar.gz" ], "version": "0.5.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tigris_0.8.2.tar.gz" ], "version": "0.8.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tigris_1.0.tar.gz" ], "version": "1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tigris_1.5.tar.gz" ], "version": "1.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tigris_1.6.tar.gz" ], "version": "1.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tigris_1.6.1.tar.gz" ], "version": "1.6.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tigris_2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tigris_2.1.tar.gz" ], "version": "2.1" } ] }, "r-timechange": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-cpp11" ], "downloads": [ "https://cloud.r-project.org/src/contrib/timechange_0.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/timechange_0.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/timechange_0.1.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=timechange" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-timechange", "patches": [], "summary": "Efficient Manipulation of Date-Times. Efficient routines for\nmanipulation of date-time objects while accounting for time-zones and\ndaylight saving times. The package includes utilities for updating of\ndate-time components (year, month, day etc.), modification of time-\nzones, rounding of date-times, period addition and subtraction etc.\nParts of the 'CCTZ' source code, released under the Apache 2.0 License,\nare included in this package. See for\nmore details.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/timechange_0.1.1.tar.gz" ], "version": "0.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/timechange_0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/timechange_0.3.0.tar.gz" ], "version": "0.3.0" } ] }, "r-timedate": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/timeDate_4032.109.tar.gz", "https://cloud.r-project.org/src/contrib/timeDate_4022.108.tar.gz", "https://cloud.r-project.org/src/contrib/timeDate_4021.106.tar.gz", "https://cloud.r-project.org/src/contrib/timeDate_3043.102.tar.gz", "https://cloud.r-project.org/src/contrib/timeDate_3042.101.tar.gz", "https://cloud.r-project.org/src/contrib/timeDate_3012.100.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=timeDate" ], "licenses": [], "maintainers": [], "name": "r-timedate", "patches": [], "summary": "Rmetrics - Chronological and Calendar Objects. 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It can thus also handle time stamps from\nhistorical data records from the same time zone, even if the financial\ncenters changed day light saving times at different calendar dates.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/timeDate_3012.100.tar.gz" ], "version": "3012.100" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/timeDate_3042.101.tar.gz" ], "version": "3042.101" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/timeDate_3043.102.tar.gz" ], "version": "3043.102" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/timeDate_4021.106.tar.gz" ], "version": "4021.106" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/timeDate_4022.108.tar.gz" ], "version": "4022.108" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/timeDate_4032.109.tar.gz" ], "version": "4032.109" } ] }, "r-tinytex": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-xfun" ], "downloads": [ "https://cloud.r-project.org/src/contrib/tinytex_0.52.tar.gz", "https://cloud.r-project.org/src/contrib/tinytex_0.45.tar.gz", "https://cloud.r-project.org/src/contrib/tinytex_0.42.tar.gz", "https://cloud.r-project.org/src/contrib/tinytex_0.39.tar.gz", "https://cloud.r-project.org/src/contrib/tinytex_0.37.tar.gz", "https://cloud.r-project.org/src/contrib/tinytex_0.36.tar.gz", "https://cloud.r-project.org/src/contrib/tinytex_0.32.tar.gz", "https://cloud.r-project.org/src/contrib/tinytex_0.28.tar.gz", "https://cloud.r-project.org/src/contrib/tinytex_0.15.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=tinytex" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-tinytex", "patches": [], "summary": "Helper Functions to Install and Maintain TeX Live, and Compile LaTeX\nDocuments. 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Implementation of a clustering method for\ntime series gene expression data based on mixed-effects models with\nGaussian variables and non- parametric cubic splines estimation. The\nmethod can robustly account for the high levels of noise present in\ntypical gene expression time series datasets.\n", "version": [ { "repositories": [ { "commit": "0ac800210e3eb9da911767a80fb5582ab33c0cad", "type": "git", "url": "https://git.bioconductor.org/packages/TMixClust" } ], "version": "1.0.1" }, { "repositories": [ { "commit": "982b31bd7e22a3dc638bbda0336546220444f0c2", "type": "git", "url": "https://git.bioconductor.org/packages/TMixClust" } ], "version": "1.12.0" }, { "repositories": [ { "commit": "e525cfd9c729a73a1964c243e5c34c37343f7bfa", "type": "git", "url": "https://git.bioconductor.org/packages/TMixClust" } ], "version": "1.16.0" }, { "repositories": [ { "commit": "71f80a7ace481f46471f36c91223effb85e17186", "type": "git", "url": "https://git.bioconductor.org/packages/TMixClust" } ], "version": "1.18.0" }, { "repositories": [ { "commit": "0250c0b238f08077b5b9ff17c2f3b7633c67dc3c", "type": "git", "url": "https://git.bioconductor.org/packages/TMixClust" } ], "version": "1.2.0" }, { "repositories": [ { "commit": "df27f53d088b02cf596504b44909f2762900ab49", "type": "git", "url": "https://git.bioconductor.org/packages/TMixClust" } ], "version": "1.20.0" }, { "repositories": [ { "commit": "bb750ce4682542ba8e2cb5bfbdb5eff839ffacd4", "type": "git", "url": "https://git.bioconductor.org/packages/TMixClust" } ], "version": "1.22.0" }, { "repositories": [ { "commit": "a52fcae6e7a5dd41e7afbe128f35397e8bc8cb12", "type": "git", "url": "https://git.bioconductor.org/packages/TMixClust" } ], "version": "1.4.0" }, { "repositories": [ { "commit": "9f5f78e52538d15f402c8f6e4c60f7212c7bc548", "type": "git", "url": "https://git.bioconductor.org/packages/TMixClust" } ], "version": "1.6.0" } ] }, "r-tmvnsim": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/tmvnsim_1.0-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=tmvnsim" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-tmvnsim", "patches": [], "summary": "Truncated Multivariate Normal Simulation. Importance sampling from the\ntruncated multivariate normal using the GHK (Geweke-Hajivassiliou-Keane)\nsimulator. Unlike Gibbs sampling which can get stuck in one truncation\nsub-region depending on initial values, this package allows truncation\nbased on disjoint regions that are created by truncation of absolute\nvalues. The GHK algorithm uses simple Cholesky transformation followed\nby recursive simulation of univariate truncated normals hence there are\nalso no convergence issues. Importance sample is returned along with\nsampling weights, based on which, one can calculate integrals over\ntruncated regions for multivariate normals.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/tmvnsim_1.0-2.tar.gz" ], "version": "1.0-2" } ] }, "r-topgo": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-annotationdbi", "r-biobase", "r-biocgenerics", "r-dbi", "r-go-db", "r-graph", "r-lattice", "r-matrixstats", "r-sparsem" ], "downloads": [ "https://git.bioconductor.org/packages/topGO" ], "homepages": [ "https://bioconductor.org/packages/topGO" ], "licenses": [], "maintainers": [], "name": "r-topgo", "patches": [], "summary": "Enrichment Analysis for Gene Ontology. topGO package provides tools for\ntesting GO terms while accounting for the topology of the GO graph.\nDifferent test statistics and different methods for eliminating local\nsimilarities and dependencies between GO terms can be implemented and\napplied.\n", "version": [ { "repositories": [ { "commit": "066a975d460046cce33fb27e74e6a0ebc33fd716", "type": "git", "url": "https://git.bioconductor.org/packages/topGO" } ], "version": "2.28.0" }, { "repositories": [ { "commit": "b1469ce1d198ccb73ef79ca22cab81659e16dbaa", "type": "git", "url": "https://git.bioconductor.org/packages/topGO" } ], "version": "2.30.1" }, { "repositories": [ { "commit": "78ce3068fc06ae38d55219759fa177e2fcb3f596", "type": "git", "url": "https://git.bioconductor.org/packages/topGO" } ], "version": "2.32.0" }, { "repositories": [ { "commit": "44cb5eaba515b365b7b2a8c22df0a45883db6b4d", "type": "git", "url": "https://git.bioconductor.org/packages/topGO" } ], "version": "2.34.0" }, { "repositories": [ { "commit": "c2f6c187b41c4aa44cc92ac781fdd878491a4019", "type": "git", "url": "https://git.bioconductor.org/packages/topGO" } ], "version": "2.36.0" }, { "repositories": [ { "commit": "3a33cf53883de45bda506953303e1809ab982adc", "type": "git", "url": "https://git.bioconductor.org/packages/topGO" } ], "version": "2.42.0" }, { "repositories": [ { "commit": "2bfa9dff41fff261aa6188f8368aebd6e8250b18", "type": "git", "url": "https://git.bioconductor.org/packages/topGO" } ], "version": "2.46.0" }, { "repositories": [ { "commit": "a47f0079319c7d74db4aeda6399e06f12a34b585", "type": "git", "url": "https://git.bioconductor.org/packages/topGO" } ], "version": "2.48.0" }, { "repositories": [ { "commit": "befbff4e67c1b01e23f111d147274641a8b7b0f5", "type": "git", "url": "https://git.bioconductor.org/packages/topGO" } ], "version": "2.50.0" }, { "repositories": [ { "commit": "214db210d1757231eb9b2889288dc385553525cd", "type": "git", "url": "https://git.bioconductor.org/packages/topGO" } ], "version": "2.52.0" } ] }, "r-treeio": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ape", "r-cli", "r-dplyr", "r-jsonlite", "r-magrittr", "r-rlang", "r-tibble", "r-tidytree" ], "downloads": [ "https://git.bioconductor.org/packages/treeio" ], "homepages": [ "https://bioconductor.org/packages/treeio" ], "licenses": [], "maintainers": [], "name": "r-treeio", "patches": [], "summary": "Base Classes and Functions for Phylogenetic Tree Input and Output.\n'treeio' is an R package to make it easier to import and store\nphylogenetic tree with associated data; and to link external data from\ndifferent sources to phylogeny. It also supports exporting phylogenetic\ntree with heterogeneous associated data to a single tree file and can be\nserved as a platform for merging tree with associated data and\nconverting file formats.\n", "version": [ { "repositories": [ { "commit": "a06b6b3d2a64f1b22c6c8c5f97c08f5863349c83", "type": "git", "url": "https://git.bioconductor.org/packages/treeio" } ], "version": "1.18.1" }, { "repositories": [ { "commit": "5f7c3704fc8202c52451d092148fdcfe683f026a", "type": "git", "url": "https://git.bioconductor.org/packages/treeio" } ], "version": "1.20.0" }, { "repositories": [ { "commit": "ed457d6fd85a50e0993c8c9acbd9b701be01a348", "type": "git", "url": "https://git.bioconductor.org/packages/treeio" } ], "version": "1.20.2" }, { "repositories": [ { "commit": "eb24a854806a671e7b37ef36dafc60b4eb9ddaa1", "type": "git", "url": "https://git.bioconductor.org/packages/treeio" } ], "version": "1.22.0" }, { "repositories": [ { "commit": "81425559d71ab87ee683c6a8833f0f165632e416", "type": "git", "url": "https://git.bioconductor.org/packages/treeio" } ], "version": "1.24.0" } ] }, "r-triebeard": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/triebeard_0.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/triebeard_0.3.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=triebeard" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-triebeard", "patches": [], "summary": "'Radix' Trees in 'Rcpp'. 'Radix trees', or 'tries', are key-value data\nstructures optimised for efficient lookups, similar in purpose to hash\ntables. 'triebeard' provides an implementation of 'radix trees' for use\nin R programming and in developing packages with 'Rcpp'.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/triebeard_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/triebeard_0.4.1.tar.gz" ], "version": "0.4.1" } ] }, "r-trimcluster": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/trimcluster_0.1-5.tar.gz", "https://cloud.r-project.org/src/contrib/trimcluster_0.1-2.1.tar.gz", "https://cloud.r-project.org/src/contrib/trimcluster_0.1-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=trimcluster" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-trimcluster", "patches": [], "summary": "Cluster analysis with trimming. Trimmed k-means clustering. The method\nis described in Cuesta-Albertos et al. (1997)\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/trimcluster_0.1-2.tar.gz" ], "version": "0.1-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/trimcluster_0.1-2.1.tar.gz" ], "version": "0.1-2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/trimcluster_0.1-5.tar.gz" ], "version": "0.1-5" } ] }, "r-truncdist": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-evd" ], "downloads": [ "https://cloud.r-project.org/src/contrib/truncdist_1.0-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=truncdist" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-truncdist", "patches": [], "summary": "Truncated Random Variables. A collection of tools to evaluate\nprobability density functions, cumulative distribution functions,\nquantile functions and random numbers for truncated random variables.\nThese functions are provided to also compute the expected value and\nvariance. Nadarajah and Kotz (2006) developed most of the functions. QQ\nplots can be produced. All the probability functions in the stats,\nstats4 and evd packages are automatically available for truncation.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/truncdist_1.0-2.tar.gz" ], "version": "1.0-2" } ] }, "r-truncnorm": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/truncnorm_1.0-9.tar.gz", "https://cloud.r-project.org/src/contrib/truncnorm_1.0-8.tar.gz", "https://cloud.r-project.org/src/contrib/truncnorm_1.0.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=truncnorm" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-truncnorm", "patches": [], "summary": "Truncated Normal Distribution. Density, probability, quantile and random\nnumber generation functions for the truncated normal distribution.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/truncnorm_1.0-8.tar.gz" ], "version": "1.0-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/truncnorm_1.0-9.tar.gz" ], "version": "1.0-9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/truncnorm_1.0.0.tar.gz" ], "version": "1.0.0" } ] }, "r-trust": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/trust_0.1-8.tar.gz", "https://cloud.r-project.org/src/contrib/trust_0.1-7.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=trust" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-trust", "patches": [], "summary": "Trust Region Optimization. Does local optimization using two derivatives\nand trust regions. Guaranteed to converge to local minimum of objective\nfunction.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/trust_0.1-7.tar.gz" ], "version": "0.1-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/trust_0.1-8.tar.gz" ], "version": "0.1-8" } ] }, "r-tseries": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-jsonlite", "r-quadprog", "r-quantmod", "r-zoo" ], "downloads": [ "https://cloud.r-project.org/src/contrib/tseries_0.10-57.tar.gz", "https://cloud.r-project.org/src/contrib/tseries_0.10-53.tar.gz", "https://cloud.r-project.org/src/contrib/tseries_0.10-52.tar.gz", "https://cloud.r-project.org/src/contrib/tseries_0.10-51.tar.gz", "https://cloud.r-project.org/src/contrib/tseries_0.10-49.tar.gz", "https://cloud.r-project.org/src/contrib/tseries_0.10-48.tar.gz", "https://cloud.r-project.org/src/contrib/tseries_0.10-47.tar.gz", "https://cloud.r-project.org/src/contrib/tseries_0.10-46.tar.gz", "https://cloud.r-project.org/src/contrib/tseries_0.10-42.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=tseries" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-tseries", "patches": [], "summary": "Time series analysis and computational finance.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/tseries_0.10-42.tar.gz" ], "version": "0.10-42" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tseries_0.10-46.tar.gz" ], "version": "0.10-46" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tseries_0.10-47.tar.gz" ], "version": "0.10-47" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tseries_0.10-48.tar.gz" ], "version": "0.10-48" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tseries_0.10-49.tar.gz" ], "version": "0.10-49" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tseries_0.10-51.tar.gz" ], "version": "0.10-51" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tseries_0.10-52.tar.gz" ], "version": "0.10-52" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tseries_0.10-53.tar.gz" ], "version": "0.10-53" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/tseries_0.10-57.tar.gz" ], "version": "0.10-57" } ] }, "r-tsne": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/tsne_0.1-3.1.tar.gz", "https://cloud.r-project.org/src/contrib/tsne_0.1-3.tar.gz", "https://cloud.r-project.org/src/contrib/tsne_0.1-2.tar.gz", "https://cloud.r-project.org/src/contrib/tsne_0.1-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=tsne" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-tsne", "patches": [], "summary": "T-Distributed Stochastic Neighbor Embedding for R (t-SNE). 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A collection of over 50 technical indicators\nfor creating technical trading rules. The package also provides fast\nimplementations of common rolling-window functions, and several\nvolatility calculations.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/TTR_0.23-1.tar.gz" ], "version": "0.23-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/TTR_0.23-3.tar.gz" ], "version": "0.23-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/TTR_0.23-4.tar.gz" ], "version": "0.23-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/TTR_0.24.2.tar.gz" ], "version": "0.24.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/TTR_0.24.3.tar.gz" ], "version": "0.24.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/TTR_0.24.4.tar.gz" ], "version": "0.24.4" } ] }, "r-tweenr": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-cpp11", "r-farver", "r-magrittr", "r-rcpp", "r-rlang", "r-vctrs" ], "downloads": [ "https://cloud.r-project.org/src/contrib/tweenr_2.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/tweenr_2.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/tweenr_1.0.2.tar.gz", "https://cloud.r-project.org/src/contrib/tweenr_1.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=tweenr" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-tweenr", "patches": [], "summary": "Interpolate Data for Smooth Animations. 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A package for\nperforming Mendelian randomization using GWAS summary data. It uses the\nIEU GWAS database to obtain data automatically, and a wide range of\nmethods to run the analysis. 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Imports transcript-level abundance, estimated\ncounts and transcript lengths, and summarizes into matrices for use with\ndownstream gene-level analysis packages. 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Imports transcript-level abundance, estimated\ncounts and transcript lengths, and summarizes into matrices for use with\ndownstream gene-level analysis packages. Average transcript length,\nweighted by sample-specific transcript abundance estimates, is provided\nas a matrix which can be used as an offset for different expression of\ngene-level counts.\n", "version": [ { "repositories": [ { "commit": "24945f8dd1e4e441ad5145fb7a37a1630912f929", "type": "git", "url": "https://git.bioconductor.org/packages/tximportData" } ], "version": "1.18.0" }, { "repositories": [ { "commit": "c576b18e43985baf8beab327cbc54afe8324659c", "type": "git", "url": "https://git.bioconductor.org/packages/tximportData" } ], "version": "1.22.0" }, { "repositories": [ { "commit": "646f366fb25be359c95dc97c9369961c8d5ed942", "type": "git", "url": "https://git.bioconductor.org/packages/tximportData" } ], "version": "1.24.0" }, { "repositories": [ { "commit": "8f6ef3e3ae54e6eb99fe915364f5174c4f50a986", "type": "git", "url": "https://git.bioconductor.org/packages/tximportData" } ], "version": "1.26.0" }, { "repositories": [ { "commit": "7de494ba12168e2766baffdd177d9cecc0642820", "type": "git", "url": "https://git.bioconductor.org/packages/tximportData" } ], "version": "1.28.0" } ] }, "r-tzdb": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-cpp11" ], "downloads": [ "https://cloud.r-project.org/src/contrib/tzdb_0.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/tzdb_0.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/tzdb_0.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=tzdb" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-tzdb", "patches": [], "summary": "Time Zone Database Information. Provides an up-to-date copy of the\nInternet Assigned Numbers Authority (IANA) Time Zone Database. It is\nupdated periodically to reflect changes made by political bodies to time\nzone boundaries, UTC offsets, and daylight saving time rules.\nAdditionally, this package provides a C++ interface for working with the\n'date' library. 'date' provides comprehensive support for working with\ndates and date-times, which this package exposes to make it easier for\nother R packages to utilize. 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An algorithm for\ngeneral-purpose unconstrained non-linear optimization. The algorithm is\nof quasi-Newton type with BFGS updating of the inverse Hessian and soft\nline search with a trust region type monitoring of the input to the line\nsearch algorithm. 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Support for measurement units in R\nvectors, matrices and arrays: automatic propagation, conversion,\nderivation and simplification of units; raising errors in case of unit\nincompatibility. Compatible with the POSIXct, Date and difftime classes.\nUses the UNIDATA udunits library and unit database for unit\ncompatibility checking and conversion. Documentation about 'units' is\nprovided in the paper by Pebesma, Mailund & Hiebert (2016,\n), included in this package as a vignette; see\n'citation(\"units\")' for details.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/units_0.4-6.tar.gz" ], "version": "0.4-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/units_0.6-2.tar.gz" ], "version": "0.6-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/units_0.6-3.tar.gz" ], "version": "0.6-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/units_0.6-7.tar.gz" ], "version": "0.6-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/units_0.7-2.tar.gz" ], "version": "0.7-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/units_0.8-0.tar.gz" ], "version": "0.8-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/units_0.8-1.tar.gz" ], "version": "0.8-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/units_0.8-5.tar.gz" ], "version": "0.8-5" } ] }, "r-upsetr": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ggplot2", "r-gridextra", "r-plyr", "r-scales" ], "downloads": [ "https://cloud.r-project.org/src/contrib/UpSetR_1.4.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=UpSetR" ], "licenses": [], "maintainers": [], "name": "r-upsetr", "patches": [], "summary": "A More Scalable Alternative to Venn and Euler Diagrams for Visualizing\nIntersecting Sets. 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It is intended to be useful for people dealing\nwith web-related datasets, such as server-side logs, although may be\nuseful for other situations involving large sets of URLs.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/urltools_1.7.3.tar.gz" ], "version": "1.7.3" } ] }, "r-usethis": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-cli", "r-clipr", "r-clisymbols", "r-crayon", "r-curl", "r-desc", "r-fs", "r-gert", "r-gh", "r-git2r", "r-glue", "r-jsonlite", "r-lifecycle", "r-purrr", "r-rappdirs", "r-rematch2", "r-rlang", "r-rprojroot", "r-rstudioapi", "r-whisker", "r-withr", "r-yaml" ], "downloads": [ "https://cloud.r-project.org/src/contrib/usethis_3.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/usethis_2.1.6.tar.gz", "https://cloud.r-project.org/src/contrib/usethis_2.1.5.tar.gz", "https://cloud.r-project.org/src/contrib/usethis_2.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/usethis_1.6.1.tar.gz", "https://cloud.r-project.org/src/contrib/usethis_1.5.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=usethis" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-usethis", "patches": [], "summary": "Automate Package and Project Setup. Automate package and project setup\ntasks that are otherwise performed manually. This includes setting up\nunit testing, test coverage, continuous integration, Git, 'GitHub',\nlicenses, 'Rcpp', 'RStudio' projects, and more.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/usethis_1.5.1.tar.gz" ], "version": "1.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/usethis_1.6.1.tar.gz" ], "version": "1.6.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/usethis_2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/usethis_2.1.5.tar.gz" ], "version": "2.1.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/usethis_2.1.6.tar.gz" ], "version": "2.1.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/usethis_3.0.0.tar.gz" ], "version": "3.0.0" } ] }, "r-utf8": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/utf8_1.2.4.tar.gz", "https://cloud.r-project.org/src/contrib/utf8_1.2.3.tar.gz", "https://cloud.r-project.org/src/contrib/utf8_1.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/utf8_1.1.4.tar.gz", "https://cloud.r-project.org/src/contrib/utf8_1.1.3.tar.gz", "https://cloud.r-project.org/src/contrib/utf8_1.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/utf8_1.1.1.tar.gz", "https://cloud.r-project.org/src/contrib/utf8_1.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/utf8_1.0.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=utf8" ], "licenses": [ "Apache-2.0 OR custom" ], "maintainers": [], "name": "r-utf8", "patches": [], "summary": "Unicode Text Processing. Process and print 'UTF-8' encoded international\ntext (Unicode). Input, validate, normalize, encode, format, and display.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/utf8_1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/utf8_1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/utf8_1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/utf8_1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/utf8_1.1.3.tar.gz" ], "version": "1.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/utf8_1.1.4.tar.gz" ], "version": "1.1.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/utf8_1.2.2.tar.gz" ], "version": "1.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/utf8_1.2.3.tar.gz" ], "version": "1.2.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/utf8_1.2.4.tar.gz" ], "version": "1.2.4" } ] }, "r-uuid": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/uuid_1.2-1.tar.gz", "https://cloud.r-project.org/src/contrib/uuid_1.1-0.tar.gz", "https://cloud.r-project.org/src/contrib/uuid_1.0-3.tar.gz", "https://cloud.r-project.org/src/contrib/uuid_0.1-4.tar.gz", "https://cloud.r-project.org/src/contrib/uuid_0.1-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=uuid" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-uuid", "patches": [], "summary": "Tools for Generating and Handling of UUIDs. Tools for generating and\nhandling of UUIDs (Universally Unique Identifiers).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/uuid_0.1-2.tar.gz" ], "version": "0.1-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/uuid_0.1-4.tar.gz" ], "version": "0.1-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/uuid_1.0-3.tar.gz" ], "version": "1.0-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/uuid_1.1-0.tar.gz" ], "version": "1.1-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/uuid_1.2-1.tar.gz" ], "version": "1.2-1" } ] }, "r-uwot": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-dqrng", "r-fnn", "r-irlba", "r-matrix", "r-rcpp", "r-rcppannoy", "r-rcppparallel", "r-rcppprogress", "r-rspectra" ], "downloads": [ "https://cloud.r-project.org/src/contrib/uwot_0.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/uwot_0.1.14.tar.gz", "https://cloud.r-project.org/src/contrib/uwot_0.1.11.tar.gz", "https://cloud.r-project.org/src/contrib/uwot_0.1.10.tar.gz", "https://cloud.r-project.org/src/contrib/uwot_0.1.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=uwot" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "r-uwot", "patches": [], "summary": "The Uniform Manifold Approximation and Projection (UMAP) Method for\nDimensionality Reduction. An implementation of the Uniform Manifold\nApproximation and Projection dimensionality reduction by McInnes et al.\n(2018) . It also provides means to transform new data\nand to carry out supervised dimensionality reduction. An implementation\nof the related LargeVis method of Tang et al. (2016) \nis also provided. This is a complete re-implementation in R (and C++,\nvia the 'Rcpp' package): no Python installation is required. See the\nuwot website () for more\ndocumentation and examples.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/uwot_0.1.10.tar.gz" ], "version": "0.1.10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/uwot_0.1.11.tar.gz" ], "version": "0.1.11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/uwot_0.1.14.tar.gz" ], "version": "0.1.14" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/uwot_0.1.3.tar.gz" ], "version": "0.1.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/uwot_0.2.2.tar.gz" ], "version": "0.2.2" } ] }, "r-v8": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-curl", "r-jsonlite", "r-rcpp" ], "downloads": [ "https://cloud.r-project.org/src/contrib/V8_5.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/V8_4.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/V8_4.2.2.tar.gz", "https://cloud.r-project.org/src/contrib/V8_4.2.1.tar.gz", "https://cloud.r-project.org/src/contrib/V8_4.2.0.tar.gz", "https://cloud.r-project.org/src/contrib/V8_4.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/V8_3.6.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=V8" ], "licenses": [], "maintainers": [], "name": "r-v8", "patches": [], "summary": "Embedded JavaScript and WebAssembly Engine for R. An R interface to V8:\nGoogle's open source JavaScript and WebAssembly engine. This package can\nbe compiled either with V8 version 6 and up or NodeJS when built as a\nshared library.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/V8_3.6.0.tar.gz" ], "version": "3.6.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/V8_4.0.0.tar.gz" ], "version": "4.0.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/V8_4.2.0.tar.gz" ], "version": "4.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/V8_4.2.1.tar.gz" ], "version": "4.2.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/V8_4.2.2.tar.gz" ], "version": "4.2.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/V8_4.3.0.tar.gz" ], "version": "4.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/V8_5.0.0.tar.gz" ], "version": "5.0.0" } ] }, "r-variantannotation": { "alias": [], "categories": [], "dependencies": [ "c", "curl", "gmake", "r", "r-annotationdbi", "r-biobase", "r-biocgenerics", "r-biostrings", "r-bsgenome", "r-dbi", "r-genomeinfodb", "r-genomicfeatures", "r-genomicranges", "r-iranges", "r-matrixgenerics", "r-rhtslib", "r-rsamtools", "r-rtracklayer", "r-s4vectors", "r-summarizedexperiment", "r-xvector", "r-zlibbioc" ], "downloads": [ "https://git.bioconductor.org/packages/VariantAnnotation" ], "homepages": [ "https://bioconductor.org/packages/VariantAnnotation" ], "licenses": [], "maintainers": [], "name": "r-variantannotation", "patches": [], "summary": "Annotation of Genetic Variants. Annotate variants, compute amino acid\ncoding changes, predict coding outcomes.\n", "version": [ { "repositories": [ { "commit": "3a91b6d4297aa416d5f056dec6f8925eb1a8eaee", "type": "git", "url": "https://git.bioconductor.org/packages/VariantAnnotation" } ], "version": "1.22.3" }, { "repositories": [ { "commit": "468d7f53fd743e04c9af853d58e871b4cc13a090", "type": "git", "url": "https://git.bioconductor.org/packages/VariantAnnotation" } ], "version": "1.24.5" }, { "repositories": [ { "commit": "60ae67598cc3d7ed20ee6417920f8c209085faaf", "type": "git", "url": "https://git.bioconductor.org/packages/VariantAnnotation" } ], "version": "1.26.1" }, { "repositories": [ { "commit": "0393347b8ce2d5edf1a61589be93e6a93eda3419", "type": "git", "url": "https://git.bioconductor.org/packages/VariantAnnotation" } ], "version": "1.28.13" }, { "repositories": [ { "commit": "fb1ab00872570afb280522c4663e347dafc07a9e", "type": "git", "url": "https://git.bioconductor.org/packages/VariantAnnotation" } ], "version": "1.30.1" }, { "repositories": [ { "commit": "9918bd19a2e6f89e5edc5fe03c8812f500bb3e19", "type": "git", "url": "https://git.bioconductor.org/packages/VariantAnnotation" } ], "version": "1.36.0" }, { "repositories": [ { "commit": "50ead7cb60cedf3c053853fab92d9f104f9f85bd", "type": "git", "url": "https://git.bioconductor.org/packages/VariantAnnotation" } ], "version": "1.40.0" }, { "repositories": [ { "commit": "d1121696c76c189d6b4df9914806bf585a495845", "type": "git", "url": "https://git.bioconductor.org/packages/VariantAnnotation" } ], "version": "1.42.1" }, { "repositories": [ { "commit": "2e7e0a3b7c1918c0d64170dc7c173a636d3764f4", "type": "git", "url": "https://git.bioconductor.org/packages/VariantAnnotation" } ], "version": "1.44.0" }, { "repositories": [ { "commit": "80d43e024bead5afd48cb86910ba4670d8d37424", "type": "git", "url": "https://git.bioconductor.org/packages/VariantAnnotation" } ], "version": "1.46.0" } ] }, "r-varselrf": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-randomforest" ], "downloads": [ "https://cloud.r-project.org/src/contrib/varSelRF_0.7-8.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=varSelRF" ], "licenses": [], "maintainers": [], "name": "r-varselrf", "patches": [], "summary": "Variable Selection using Random Forests. Variable selection from random\nforests using both backwards variable elimination (for the selection of\nsmall sets of non-redundant variables) and selection based on the\nimportance spectrum (somewhat similar to scree plots; for the selection\nof large, potentially highly-correlated variables). Main applications in\nhigh-dimensional data (e.g., microarray data, and other genomics and\nproteomics applications).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/varSelRF_0.7-8.tar.gz" ], "version": "0.7-8" } ] }, "r-vcd": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-colorspace", "r-lmtest", "r-mass" ], "downloads": [ "https://cloud.r-project.org/src/contrib/vcd_1.4-12.tar.gz", "https://cloud.r-project.org/src/contrib/vcd_1.4-11.tar.gz", "https://cloud.r-project.org/src/contrib/vcd_1.4-10.tar.gz", "https://cloud.r-project.org/src/contrib/vcd_1.4-9.tar.gz", "https://cloud.r-project.org/src/contrib/vcd_1.4-8.tar.gz", "https://cloud.r-project.org/src/contrib/vcd_1.4-4.tar.gz", "https://cloud.r-project.org/src/contrib/vcd_1.4-3.tar.gz", "https://cloud.r-project.org/src/contrib/vcd_1.4-1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=vcd" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-vcd", "patches": [], "summary": "Visualizing Categorical Data. Visualization techniques, data sets,\nsummary and inference procedures aimed particularly at categorical data.\nSpecial emphasis is given to highly extensible grid graphics. The\npackage was package was originally inspired by the book \"Visualizing\nCategorical Data\" by Michael Friendly and is now the main support\npackage for a new book, \"Discrete Data Analysis with R\" by Michael\nFriendly and David Meyer (2015).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/vcd_1.4-1.tar.gz" ], "version": "1.4-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vcd_1.4-10.tar.gz" ], "version": "1.4-10" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vcd_1.4-11.tar.gz" ], "version": "1.4-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vcd_1.4-12.tar.gz" ], "version": "1.4-12" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vcd_1.4-3.tar.gz" ], "version": "1.4-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vcd_1.4-4.tar.gz" ], "version": "1.4-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vcd_1.4-8.tar.gz" ], "version": "1.4-8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vcd_1.4-9.tar.gz" ], "version": "1.4-9" } ] }, "r-vcfr": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-ape", "r-dplyr", "r-magrittr", "r-memuse", "r-pinfsc50", "r-rcpp", "r-stringr", "r-tibble", "r-vegan", "r-viridislite", "zlib-api" ], "downloads": [ "https://cloud.r-project.org/src/contrib/vcfR_1.15.0.tar.gz", "https://cloud.r-project.org/src/contrib/vcfR_1.14.0.tar.gz", "https://cloud.r-project.org/src/contrib/vcfR_1.13.0.tar.gz", "https://cloud.r-project.org/src/contrib/vcfR_1.12.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=vcfR" ], "licenses": [], "maintainers": [ "dorton21" ], "name": "r-vcfr", "patches": [], "summary": "Manipulate and Visualize VCF Data. Facilitates easy manipulation of\nvariant call format (VCF) data. Functions are provided to rapidly read\nfrom and write to VCF files. Once VCF data is read into R a parser\nfunction extracts matrices of data. This information can then be used\nfor quality control or other purposes. Additional functions provide\nvisualization of genomic data. Once processing is complete data may be\nwritten to a VCF file (*.vcf.gz). It also may be converted into other\npopular R objects (e.g., genlight, DNAbin). VcfR provides a link between\nVCF data and familiar R software.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/vcfR_1.12.0.tar.gz" ], "version": "1.12.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vcfR_1.13.0.tar.gz" ], "version": "1.13.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vcfR_1.14.0.tar.gz" ], "version": "1.14.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vcfR_1.15.0.tar.gz" ], "version": "1.15.0" } ] }, "r-vctrs": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-cli", "r-digest", "r-ellipsis", "r-glue", "r-lifecycle", "r-rlang", "r-zeallot" ], "downloads": [ "https://cloud.r-project.org/src/contrib/vctrs_0.6.5.tar.gz", "https://cloud.r-project.org/src/contrib/vctrs_0.6.4.tar.gz", "https://cloud.r-project.org/src/contrib/vctrs_0.6.3.tar.gz", "https://cloud.r-project.org/src/contrib/vctrs_0.6.2.tar.gz", "https://cloud.r-project.org/src/contrib/vctrs_0.6.1.tar.gz", "https://cloud.r-project.org/src/contrib/vctrs_0.6.0.tar.gz", "https://cloud.r-project.org/src/contrib/vctrs_0.5.2.tar.gz", "https://cloud.r-project.org/src/contrib/vctrs_0.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/vctrs_0.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/vctrs_0.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/vctrs_0.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/vctrs_0.3.8.tar.gz", "https://cloud.r-project.org/src/contrib/vctrs_0.3.6.tar.gz", "https://cloud.r-project.org/src/contrib/vctrs_0.3.5.tar.gz", "https://cloud.r-project.org/src/contrib/vctrs_0.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=vctrs" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-vctrs", "patches": [], "summary": "Vector Helpers. Defines new notions of prototype and size that are used\nto provide tools for consistent and well-founded type-coercion and size-\nrecycling, and are in turn connected to ideas of type- and size-\nstability useful for analyzing function interfaces.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/vctrs_0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vctrs_0.3.5.tar.gz" ], "version": "0.3.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vctrs_0.3.6.tar.gz" ], "version": "0.3.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vctrs_0.3.8.tar.gz" ], "version": "0.3.8" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vctrs_0.4.1.tar.gz" ], "version": "0.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vctrs_0.4.2.tar.gz" ], "version": "0.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vctrs_0.5.0.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vctrs_0.5.1.tar.gz" ], "version": "0.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vctrs_0.5.2.tar.gz" ], "version": "0.5.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vctrs_0.6.0.tar.gz" ], "version": "0.6.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vctrs_0.6.1.tar.gz" ], "version": "0.6.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vctrs_0.6.2.tar.gz" ], "version": "0.6.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vctrs_0.6.3.tar.gz" ], "version": "0.6.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vctrs_0.6.4.tar.gz" ], "version": "0.6.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vctrs_0.6.5.tar.gz" ], "version": "0.6.5" } ] }, "r-vegan": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r", "r-cluster", "r-lattice", "r-mass", "r-mgcv", "r-permute" ], "downloads": [ "https://cloud.r-project.org/src/contrib/vegan_2.6-6.1.tar.gz", "https://cloud.r-project.org/src/contrib/vegan_2.6-4.tar.gz", "https://cloud.r-project.org/src/contrib/vegan_2.6-2.tar.gz", "https://cloud.r-project.org/src/contrib/vegan_2.5-7.tar.gz", "https://cloud.r-project.org/src/contrib/vegan_2.5-5.tar.gz", "https://cloud.r-project.org/src/contrib/vegan_2.5-4.tar.gz", "https://cloud.r-project.org/src/contrib/vegan_2.4-3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=vegan" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "r-vegan", "patches": [], "summary": "Community Ecology Package. Ordination methods, diversity analysis and\nother functions for community and vegetation ecologists.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/vegan_2.4-3.tar.gz" ], "version": "2.4-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vegan_2.5-4.tar.gz" ], "version": "2.5-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vegan_2.5-5.tar.gz" ], "version": "2.5-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vegan_2.5-7.tar.gz" ], "version": "2.5-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vegan_2.6-2.tar.gz" ], "version": "2.6-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vegan_2.6-4.tar.gz" ], "version": "2.6-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vegan_2.6-6.1.tar.gz" ], "version": "2.6-6.1" } ] }, "r-vfs": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-e1071", "r-nleqslv" ], "downloads": [ "https://cloud.r-project.org/src/contrib/VFS_1.0.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=VFS" ], "licenses": [], "maintainers": [], "name": "r-vfs", "patches": [], "summary": "Vegetated Filter Strip and Erosion Model. Empirical models for runoff,\nerosion, and phosphorus loss across a vegetated filter strip, given\nslope, soils, climate, and vegetation (Gall et al., 2018)\n. It also includes functions for deriving\nclimate parameters from measured daily weather data, and for simulating\nrainfall. Models implemented include MUSLE (Williams, 1975) and APLE\n(Vadas et al., 2009 ).\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/VFS_1.0.2.tar.gz" ], "version": "1.0.2" } ] }, "r-vgam": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/VGAM_1.1-11.tar.gz", "https://cloud.r-project.org/src/contrib/VGAM_1.1-8.tar.gz", "https://cloud.r-project.org/src/contrib/VGAM_1.1-7.tar.gz", "https://cloud.r-project.org/src/contrib/VGAM_1.1-6.tar.gz", "https://cloud.r-project.org/src/contrib/VGAM_1.1-5.tar.gz", "https://cloud.r-project.org/src/contrib/VGAM_1.1-1.tar.gz", "https://cloud.r-project.org/src/contrib/VGAM_1.0-6.tar.gz", "https://cloud.r-project.org/src/contrib/VGAM_1.0-4.tar.gz", "https://cloud.r-project.org/src/contrib/VGAM_1.0-3.tar.gz", "https://cloud.r-project.org/src/contrib/VGAM_1.0-2.tar.gz", "https://cloud.r-project.org/src/contrib/VGAM_1.0-1.tar.gz", "https://cloud.r-project.org/src/contrib/VGAM_1.0-0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=VGAM" ], "licenses": [], "maintainers": [], "name": "r-vgam", "patches": [], "summary": "Vector Generalized Linear and Additive Models. An implementation of\nabout 6 major classes of statistical regression models. The central\nalgorithm is Fisher scoring and iterative reweighted least squares. At\nthe heart of this package are the vector generalized linear and additive\nmodel (VGLM/VGAM) classes. VGLMs can be loosely thought of as\nmultivariate GLMs. VGAMs are data-driven VGLMs that use smoothing. The\nbook \"Vector Generalized Linear and Additive Models: With an\nImplementation in R\" (Yee, 2015) gives\ndetails of the statistical framework and the package. Currently only\nfixed-effects models are implemented. Many (150+) models and\ndistributions are estimated by maximum likelihood estimation (MLE) or\npenalized MLE. The other classes are RR-VGLMs (reduced-rank VGLMs),\nquadratic RR-VGLMs, reduced-rank VGAMs, RCIMs (row-column interaction\nmodels)---these classes perform constrained and unconstrained quadratic\nordination (CQO/UQO) models in ecology, as well as constrained additive\nordination (CAO). Hauck-Donner effect detection is implemented. Note\nthat these functions are subject to change; see the NEWS and ChangeLog\nfiles for latest changes.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/VGAM_1.0-0.tar.gz" ], "version": "1.0-0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/VGAM_1.0-1.tar.gz" ], "version": "1.0-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/VGAM_1.0-2.tar.gz" ], "version": "1.0-2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/VGAM_1.0-3.tar.gz" ], "version": "1.0-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/VGAM_1.0-4.tar.gz" ], "version": "1.0-4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/VGAM_1.0-6.tar.gz" ], "version": "1.0-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/VGAM_1.1-1.tar.gz" ], "version": "1.1-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/VGAM_1.1-11.tar.gz" ], "version": "1.1-11" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/VGAM_1.1-5.tar.gz" ], "version": "1.1-5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/VGAM_1.1-6.tar.gz" ], "version": "1.1-6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/VGAM_1.1-7.tar.gz" ], "version": "1.1-7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/VGAM_1.1-8.tar.gz" ], "version": "1.1-8" } ] }, "r-vioplot": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-sm", "r-zoo" ], "downloads": [ "https://cloud.r-project.org/src/contrib/vioplot_0.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/vioplot_0.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/vioplot_0.3.7.tar.gz", "https://cloud.r-project.org/src/contrib/vioplot_0.3.5.tar.gz", "https://cloud.r-project.org/src/contrib/vioplot_0.3.2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=vioplot" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "r-vioplot", "patches": [], "summary": "Violin Plot. A violin plot is a combination of a box plot and a kernel\ndensity plot. This package allows extensive customisation of violin\nplots.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/vioplot_0.3.2.tar.gz" ], "version": "0.3.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vioplot_0.3.5.tar.gz" ], "version": "0.3.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vioplot_0.3.7.tar.gz" ], "version": "0.3.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vioplot_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vioplot_0.5.0.tar.gz" ], "version": "0.5.0" } ] }, "r-vipor": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/vipor_0.4.7.tar.gz", "https://cloud.r-project.org/src/contrib/vipor_0.4.5.tar.gz", "https://cloud.r-project.org/src/contrib/vipor_0.4.4.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=vipor" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "r-vipor", "patches": [], "summary": "Plot Categorical Data Using Quasirandom Noise and Density Estimates.\nGenerate a violin point plot, a combination of a violin/histogram plot\nand a scatter plot by offsetting points within a category based on their\ndensity using quasirandom noise.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/vipor_0.4.4.tar.gz" ], "version": "0.4.4" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vipor_0.4.5.tar.gz" ], "version": "0.4.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vipor_0.4.7.tar.gz" ], "version": "0.4.7" } ] }, "r-viridis": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-ggplot2", "r-gridextra", "r-viridislite" ], "downloads": [ "https://cloud.r-project.org/src/contrib/viridis_0.6.5.tar.gz", "https://cloud.r-project.org/src/contrib/viridis_0.6.2.tar.gz", "https://cloud.r-project.org/src/contrib/viridis_0.5.1.tar.gz", "https://cloud.r-project.org/src/contrib/viridis_0.5.0.tar.gz", "https://cloud.r-project.org/src/contrib/viridis_0.4.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=viridis" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-viridis", "patches": [], "summary": "Colorblind-Friendly Color Maps for R. Color maps designed to improve\ngraph readability for readers with common forms of color blindness\nand/or color vision deficiency. The color maps are also perceptually-\nuniform, both in regular form and also when converted to black-and-white\nfor printing. This package also contains 'ggplot2' bindings for discrete\nand continuous color and fill scales. A lean version of the package\ncalled 'viridisLite' that does not include the 'ggplot2' bindings can be\nfound at .\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/viridis_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/viridis_0.5.0.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/viridis_0.5.1.tar.gz" ], "version": "0.5.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/viridis_0.6.2.tar.gz" ], "version": "0.6.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/viridis_0.6.5.tar.gz" ], "version": "0.6.5" } ] }, "r-viridislite": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/viridisLite_0.4.2.tar.gz", "https://cloud.r-project.org/src/contrib/viridisLite_0.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/viridisLite_0.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/viridisLite_0.3.0.tar.gz", "https://cloud.r-project.org/src/contrib/viridisLite_0.2.0.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=viridisLite" ], "licenses": [], "maintainers": [], "name": "r-viridislite", "patches": [], "summary": "Colorblind-Friendly Color Maps (Lite Version). Color maps designed to\nimprove graph readability for readers with common forms of color\nblindness and/or color vision deficiency. The color maps are also\nperceptually-uniform, both in regular form and also when converted to\nblack-and-white for printing. This is the 'lite' version of the\n'viridis' package that also contains 'ggplot2' bindings for discrete and\ncontinuous color and fill scales and can be found at\n.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/viridisLite_0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/viridisLite_0.3.0.tar.gz" ], "version": "0.3.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/viridisLite_0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/viridisLite_0.4.1.tar.gz" ], "version": "0.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/viridisLite_0.4.2.tar.gz" ], "version": "0.4.2" } ] }, "r-visnetwork": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-htmltools", "r-htmlwidgets", "r-jsonlite", "r-magrittr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/visNetwork_2.1.2.tar.gz", "https://cloud.r-project.org/src/contrib/visNetwork_2.1.0.tar.gz", "https://cloud.r-project.org/src/contrib/visNetwork_2.0.9.tar.gz", "https://cloud.r-project.org/src/contrib/visNetwork_2.0.7.tar.gz", "https://cloud.r-project.org/src/contrib/visNetwork_2.0.6.tar.gz", "https://cloud.r-project.org/src/contrib/visNetwork_1.0.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=visNetwork" ], "licenses": [], "maintainers": [], "name": "r-visnetwork", "patches": [], "summary": "Network Visualization using 'vis.js' Library. Provides an R interface to\nthe 'vis.js' JavaScript charting library. It allows an interactive\nvisualization of networks.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/visNetwork_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/visNetwork_2.0.6.tar.gz" ], "version": "2.0.6" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/visNetwork_2.0.7.tar.gz" ], "version": "2.0.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/visNetwork_2.0.9.tar.gz" ], "version": "2.0.9" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/visNetwork_2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/visNetwork_2.1.2.tar.gz" ], "version": "2.1.2" } ] }, "r-vroom": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-bit64", "r-cli", "r-cpp11", "r-crayon", "r-glue", "r-hms", "r-lifecycle", "r-progress", "r-rlang", "r-tibble", "r-tidyselect", "r-tzdb", "r-vctrs", "r-withr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/vroom_1.6.5.tar.gz", "https://cloud.r-project.org/src/contrib/vroom_1.6.1.tar.gz", "https://cloud.r-project.org/src/contrib/vroom_1.6.0.tar.gz", "https://cloud.r-project.org/src/contrib/vroom_1.5.7.tar.gz", "https://cloud.r-project.org/src/contrib/vroom_1.5.5.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=vroom" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-vroom", "patches": [], "summary": "Read and Write Rectangular Text Data Quickly. The goal of 'vroom' is to\nread and write data (like 'csv', 'tsv' and 'fwf') quickly. When reading\nit uses a quick initial indexing step, then reads the values lazily , so\nonly the data you actually use needs to be read. The writer formats the\ndata in parallel and writes to disk asynchronously from formatting.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/vroom_1.5.5.tar.gz" ], "version": "1.5.5" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vroom_1.5.7.tar.gz" ], "version": "1.5.7" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vroom_1.6.0.tar.gz" ], "version": "1.6.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vroom_1.6.1.tar.gz" ], "version": "1.6.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/vroom_1.6.5.tar.gz" ], "version": "1.6.5" } ] }, "r-vsn": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "r-affy", "r-biobase", "r-ggplot2", "r-hexbin", "r-lattice", "r-limma" ], "downloads": [ "https://git.bioconductor.org/packages/vsn" ], "homepages": [ "https://bioconductor.org/packages/vsn" ], "licenses": [], "maintainers": [], "name": "r-vsn", "patches": [], "summary": "Variance stabilization and calibration for microarray data. The package\nimplements a method for normalising microarray intensities, and works\nfor single- and multiple-color arrays. It can also be used for data from\nother technologies, as long as they have similar format. The method uses\na robust variant of the maximum-likelihood estimator for an additive-\nmultiplicative error model and affine calibration. The model\nincorporates data calibration step (a.k.a. normalization), a model for\nthe dependence of the variance on the mean intensity and a variance\nstabilizing data transformation. Differences between transformed\nintensities are analogous to \"normalized log-ratios\". However, in\ncontrast to the latter, their variance is independent of the mean, and\nthey are usually more sensitive and specific in detecting differential\ntranscription.\n", "version": [ { "repositories": [ { "commit": "e54513fcdd07ccfb8094359e93cef145450f0ee0", "type": "git", "url": "https://git.bioconductor.org/packages/vsn" } ], "version": "3.44.0" }, { "repositories": [ { "commit": "7ecfd20452348da27d6fcc052cbff2b9be777792", "type": "git", "url": "https://git.bioconductor.org/packages/vsn" } ], "version": "3.46.0" }, { "repositories": [ { "commit": "d57f64112004b1d73b3be625949830209de027eb", "type": "git", "url": "https://git.bioconductor.org/packages/vsn" } ], "version": "3.48.1" }, { "repositories": [ { "commit": "ad49fcc288c6065d0f04040acd688e7f0d7d927e", "type": "git", "url": "https://git.bioconductor.org/packages/vsn" } ], "version": "3.50.0" }, { "repositories": [ { "commit": "e80642d850ae93bc141654200a8970b561a94fbe", "type": "git", "url": "https://git.bioconductor.org/packages/vsn" } ], "version": "3.52.0" }, { "repositories": [ { "commit": "a451e6ae989623750feacf26d99683a7955adf85", "type": "git", "url": "https://git.bioconductor.org/packages/vsn" } ], "version": "3.58.0" }, { "repositories": [ { "commit": "6ae7f4e07ec1a5a9482cab892d98175983bfcd50", "type": "git", "url": "https://git.bioconductor.org/packages/vsn" } ], "version": "3.62.0" }, { "repositories": [ { "commit": "1f09f20ee7f81100fb0bf66288c4caf0049b5508", "type": "git", "url": "https://git.bioconductor.org/packages/vsn" } ], "version": "3.64.0" }, { "repositories": [ { "commit": "ddccd6c74ebea426056794c2bfad2dfd02631092", "type": "git", "url": "https://git.bioconductor.org/packages/vsn" } ], "version": "3.66.0" }, { "repositories": [ { "commit": "b8c9cef9730a00a810e8ec08e472b26d0bff5357", "type": "git", "url": "https://git.bioconductor.org/packages/vsn" } ], "version": "3.68.0" } ] }, "r-waldo": { "alias": [], "categories": [], "dependencies": [ "gmake", "r", "r-cli", "r-diffobj", "r-fansi", "r-glue", "r-rematch2", "r-rlang", "r-tibble" ], "downloads": [ "https://cloud.r-project.org/src/contrib/waldo_0.5.2.tar.gz", "https://cloud.r-project.org/src/contrib/waldo_0.4.0.tar.gz", "https://cloud.r-project.org/src/contrib/waldo_0.3.1.tar.gz", "https://cloud.r-project.org/src/contrib/waldo_0.2.3.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=waldo" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-waldo", "patches": [], "summary": "Find Differences Between R Objects. Compare complex R objects and reveal\nthe key differences. 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Functions necessary to perform\nWeighted Correlation Network Analysis on high-dimensional data as\noriginally described in Horvath and Zhang (2005)\n and Langfelder and Horvath (2008)\n. Includes functions for rudimentary data\ncleaning, construction of correlation networks, module identification,\nsummarization, and relating of variables and modules to sample traits.\nAlso includes a number of utility functions for data manipulation and\nvisualization.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/WGCNA_1.64-1.tar.gz" ], "version": "1.64-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/WGCNA_1.67.tar.gz" ], "version": "1.67" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/WGCNA_1.68.tar.gz" ], "version": "1.68" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/WGCNA_1.69.tar.gz" ], "version": "1.69" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/WGCNA_1.70-3.tar.gz" ], "version": "1.70-3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/WGCNA_1.71.tar.gz" ], "version": "1.71" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/WGCNA_1.72-1.tar.gz" ], "version": "1.72-1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/WGCNA_1.72-5.tar.gz" ], "version": "1.72-5" } ] }, "r-whisker": { "alias": [], "categories": [], "dependencies": [ "gmake", "r" ], "downloads": [ "https://cloud.r-project.org/src/contrib/whisker_0.4.1.tar.gz", "https://cloud.r-project.org/src/contrib/whisker_0.4.tar.gz", "https://cloud.r-project.org/src/contrib/whisker_0.3-2.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=whisker" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "r-whisker", "patches": [], "summary": "{{mustache}} for R, Logicless Templating. 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A set of functions to\nrun code 'with' safely and temporarily modified global state. Many of\nthese functions were originally a part of the 'devtools' package, this\nprovides a simple package with limited dependencies to provide access to\nthese functions.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/withr_1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/withr_1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/withr_2.1.2.tar.gz" ], "version": "2.1.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/withr_2.2.0.tar.gz" ], "version": "2.2.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/withr_2.4.0.tar.gz" ], "version": "2.4.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/withr_2.4.2.tar.gz" ], "version": "2.4.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/withr_2.4.3.tar.gz" ], "version": "2.4.3" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/withr_2.5.0.tar.gz" ], "version": "2.5.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/withr_3.0.1.tar.gz" ], "version": "3.0.1" } ] }, "r-wk": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "r", "r-cpp11" ], "downloads": [ "https://cloud.r-project.org/src/contrib/wk_0.9.2.tar.gz", "https://cloud.r-project.org/src/contrib/wk_0.7.2.tar.gz", "https://cloud.r-project.org/src/contrib/wk_0.7.0.tar.gz", "https://cloud.r-project.org/src/contrib/wk_0.6.0.tar.gz", "https://cloud.r-project.org/src/contrib/wk_0.4.1.tar.gz", null ], "homepages": [ "https://cloud.r-project.org/package=wk" ], "licenses": [ "MIT" ], "maintainers": [], "name": "r-wk", "patches": [], "summary": "Lightweight Well-Known Geometry Parsing. Provides a minimal R and C++\nAPI for parsing well-known binary and well-known text representation of\ngeometries to and from R-native formats. Well-known binary is compact\nand fast to parse; well-known text is human-readable and is useful for\nwriting tests. These formats are only useful in R if the information\nthey contain can be accessed in R, for which high-performance functions\nare provided here.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/wk_0.4.1.tar.gz" ], "version": "0.4.1" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/wk_0.6.0.tar.gz" ], "version": "0.6.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/wk_0.7.0.tar.gz" ], "version": "0.7.0" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/wk_0.7.2.tar.gz" ], "version": "0.7.2" }, { "downloads": [ "https://cloud.r-project.org/src/contrib/wk_0.9.2.tar.gz" ], "version": "0.9.2" } ] }, "r-writexl": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "r", "zlib-api" ], "downloads": [ "https://cloud.r-project.org/src/contrib/writexl_1.5.0.tar.gz", null ], "homepages": [ "https://docs.ropensci.org/writexl/" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "r-writexl", "patches": [], "summary": "Zero-dependency data frame to xlsx exporter based on 'libxlsxwriter'.\nFast and no Java or Excel required.\n", "version": [ { "downloads": [ "https://cloud.r-project.org/src/contrib/writexl_1.5.0.tar.gz" ], "version": "1.5.0" } ] }, "r-wru": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "r", "r-cli", "r-devtools", "r-dplyr", "r-furrr", "r-future", "r-piggyback", "r-pl94171", "r-purrr", "r-rcpp", "r-rcpparmadillo", "r-rlang", "r-tidyr" ], "downloads": [ "https://cloud.r-project.org/src/contrib/wru_3.0.3.tar.gz", "https://cloud.r-project.org/src/contrib/wru_1.0.1.tar.gz", "https://cloud.r-project.org/src/contrib/wru_1.0.0.tar.gz", "https://cloud.r-project.org/src/contrib/wru_0.1-12.tar.gz", "https://cloud.r-project.org/src/contrib/wru_0.1-11.tar.gz", "https://cloud.r-project.org/src/contrib/wru_0.1-10.tar.gz", "https://cloud.r-project.org/src/contrib/wru_0.1-9.tar.gz", "https://cloud.r-project.org/src/contrib/wru_0.1-8.tar.gz", "https://cloud.r-project.org/src/contrib/wru_0.1-7.tar.gz", "https://cloud.r-project.org/src/contrib/wru_0.1-6.tar.gz", "https://cloud.r-project.org/src/contrib/wru_0.1-5.tar.gz", "https://cloud.r-project.org/src/contrib/wru_0.1-4.tar.gz", "https://cloud.r-project.org/src/contrib/wru_0.1-3.tar.gz", "https://cloud.r-project.org/src/contrib/wru_0.1-2.tar.gz", "https://cloud.r-project.org/src/contrib/wru_0.1-1.tar.gz", "https://cloud.r-project.org/src/contrib/wru_0.0-2.tar.gz", "https://cloud.r-project.org/src/contrib/wru_0.0-1.tar.gz", null ], "homepages": [ "https://github.com/kosukeimai/wru" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [ "jgaeb" ], "name": "r-wru", "patches": [], "summary": "Who are You? 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Classifier is a naive Bayesian classifier that can rapidly and\naccurately provides taxonomic assignments from domain to genus, with\nconfidence estimates for each assignment.\n", "version": [ { "downloads": [ "https://prdownloads.sourceforge.net/rdp-classifier/rdp_classifier_2.12.zip" ], "version": "2.12" } ] }, "rdptools": { "alias": [], "categories": [], "dependencies": [ "ant", "gmake", "java", "python" ], "downloads": [ "https://github.com/rdpstaff/RDPTools/archive/2.0.2.tar.gz" ], "homepages": [ "https://github.com/rdpstaff/RDPTools" ], "licenses": [], "maintainers": [], "name": "rdptools", "patches": [], "summary": "Collection of commonly used RDP Tools for easy building.\n", "version": [ { "downloads": [ "https://github.com/rdpstaff/RDPTools/archive/2.0.2.tar.gz" ], "version": "2.0.2" } ] }, "re2": { "alias": [], "categories": [], "dependencies": [ "abseil-cpp", "benchmark", "cmake", "cxx", "gmake", "googletest", "icu4c", "ninja" ], "downloads": [ 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"repositories": [ { "commit": "4fb766095d8f459e0f8025be70f9173673905d12", "type": "git", "url": "https://github.com/lh3/readfq.git" } ], "version": "2013.04.10" } ] }, "readline": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "ncurses" ], "downloads": [ "https://ftpmirror.gnu.org/readline/readline-8.3.tar.gz", "https://ftpmirror.gnu.org/readline/readline-8.2.tar.gz", "https://ftpmirror.gnu.org/readline/readline-8.1.tar.gz", "https://ftpmirror.gnu.org/readline/readline-8.0.tar.gz", "https://ftpmirror.gnu.org/readline/readline-7.0.tar.gz", "https://ftpmirror.gnu.org/readline/readline-6.3.tar.gz" ], "homepages": [ "https://tiswww.case.edu/php/chet/readline/rltop.html" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "readline", "patches": [ "https://ftpmirror.gnu.org/readline/readline-8.3-patches/readline83-001 when @8.3", "https://ftpmirror.gnu.org/readline/readline-8.2-patches/readline82-001 when @8.2", 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}, { "downloads": [ "https://github.com/ROCm/rocBLAS/archive/rocm-7.0.2.tar.gz" ], "version": "7.0.2" } ] }, "rocdecode": { "alias": [], "categories": [ "rocm" ], "dependencies": [ "cmake", "ffmpeg", "gmake", "hip", "libdrm", "libva", "llvm-amdgpu", "ninja" ], "downloads": [ "https://github.com/ROCm/rocDecode/archive/refs/tags/rocm-7.0.2.tar.gz", "https://github.com/ROCm/rocDecode/archive/refs/tags/rocm-7.0.0.tar.gz", "https://github.com/ROCm/rocDecode/archive/refs/tags/rocm-6.4.3.tar.gz", "https://github.com/ROCm/rocDecode/archive/refs/tags/rocm-6.4.2.tar.gz", "https://github.com/ROCm/rocDecode/archive/refs/tags/rocm-6.4.1.tar.gz", "https://github.com/ROCm/rocDecode/archive/refs/tags/rocm-6.4.0.tar.gz", "https://github.com/ROCm/rocDecode/archive/refs/tags/rocm-6.3.3.tar.gz", "https://github.com/ROCm/rocDecode/archive/refs/tags/rocm-6.3.2.tar.gz", "https://github.com/ROCm/rocDecode/archive/refs/tags/rocm-6.3.1.tar.gz", 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], "version": "6.3.3" }, { "downloads": [ "https://github.com/ROCm/rocDecode/archive/refs/tags/rocm-6.4.0.tar.gz" ], "version": "6.4.0" }, { "downloads": [ "https://github.com/ROCm/rocDecode/archive/refs/tags/rocm-6.4.1.tar.gz" ], "version": "6.4.1" }, { "downloads": [ "https://github.com/ROCm/rocDecode/archive/refs/tags/rocm-6.4.2.tar.gz" ], "version": "6.4.2" }, { "downloads": [ "https://github.com/ROCm/rocDecode/archive/refs/tags/rocm-6.4.3.tar.gz" ], "version": "6.4.3" }, { "downloads": [ "https://github.com/ROCm/rocDecode/archive/refs/tags/rocm-7.0.0.tar.gz" ], "version": "7.0.0" }, { "downloads": [ "https://github.com/ROCm/rocDecode/archive/refs/tags/rocm-7.0.2.tar.gz" ], "version": "7.0.2" } ] }, "rocfft": { "alias": [], "categories": [ "rocm", "detectable" ], "dependencies": [ "boost", "c", "cmake", "cxx", "fftw", "gmake", "googletest", "hip", "hiprand", "ninja", "python", "rocm-cmake", "rocm-openmp-extras", "rocrand", "sqlite" ], "downloads": [ 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"https://github.com/ROCm/rocfft/archive/rocm-6.0.2.tar.gz", "https://github.com/ROCm/rocfft/archive/rocm-6.0.0.tar.gz", "https://github.com/ROCm/rocfft/archive/rocm-5.7.1.tar.gz", "https://github.com/ROCm/rocfft/archive/rocm-5.7.0.tar.gz", "https://github.com/ROCm/rocFFT.git" ], "homepages": [ "https://github.com/ROCm/rocFFT/" ], "licenses": [ "MIT" ], "maintainers": [ "afzpatel", "cgmb", "haampie", "renjithravindrankannath", "srekolam" ], "name": "rocfft", "patches": [ "0005-Fix-clients-tests-include-rocrand-fftw-include-dir-rocm-6.0.0.patch when @5.7.0:6.2", "0005-Fix-clients-tests-include-rocrand-fftw-include-dir-rocm-6.3.patch when @6.3", "https://github.com/ROCm/rocFFT/commit/0ec78f1daac2d7fa1415f4deff0d129252c1c9de.patch?full_index=1 when @6.0.0" ], "summary": "Radeon Open Compute FFT library\n", "version": [ { "downloads": [ "https://github.com/ROCm/rocfft/archive/rocm-5.7.0.tar.gz" ], "version": "5.7.0" }, { "downloads": [ 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"gmake", "hip", "libdrm", "libva", "llvm-amdgpu", "ninja" ], "downloads": [ "https://github.com/ROCm/rocJPEG/archive/refs/tags/rocm-7.0.2.tar.gz", "https://github.com/ROCm/rocJPEG/archive/refs/tags/rocm-7.0.0.tar.gz", "https://github.com/ROCm/rocJPEG/archive/refs/tags/rocm-6.4.3.tar.gz", "https://github.com/ROCm/rocJPEG/archive/refs/tags/rocm-6.4.2.tar.gz", "https://github.com/ROCm/rocJPEG/archive/refs/tags/rocm-6.4.1.tar.gz", "https://github.com/ROCm/rocJPEG/archive/refs/tags/rocm-6.4.0.tar.gz", "https://github.com/ROCm/rocJPEG/archive/refs/tags/rocm-6.3.3.tar.gz", "https://github.com/ROCm/rocJPEG/archive/refs/tags/rocm-6.3.2.tar.gz", "https://github.com/ROCm/rocJPEG/archive/refs/tags/rocm-6.3.1.tar.gz", "https://github.com/ROCm/rocJPEG/archive/refs/tags/rocm-6.3.0.tar.gz", "https://github.com/ROCm/rocJPEG.git" ], "homepages": [ "https://github.com/ROCm/rocJPEG" ], "licenses": [ "MIT" ], "maintainers": [ "afzpatel", "renjithravindrankannath", "srekolam" ], "name": "rocjpeg", "patches": [ "0001-add-amdgpu-drm-include.patch when @6.4" ], "summary": "rocJPEG is a high-performance jpeg decode SDK for decoding jpeg images\nusing a hardware-accelerated jpeg decoder on AMD's GPUs.\n", "version": [ { "downloads": [ "https://github.com/ROCm/rocJPEG/archive/refs/tags/rocm-6.3.0.tar.gz" ], "version": "6.3.0" }, { "downloads": [ "https://github.com/ROCm/rocJPEG/archive/refs/tags/rocm-6.3.1.tar.gz" ], "version": "6.3.1" }, { "downloads": [ "https://github.com/ROCm/rocJPEG/archive/refs/tags/rocm-6.3.2.tar.gz" ], "version": "6.3.2" }, { "downloads": [ "https://github.com/ROCm/rocJPEG/archive/refs/tags/rocm-6.3.3.tar.gz" ], "version": "6.3.3" }, { "downloads": [ "https://github.com/ROCm/rocJPEG/archive/refs/tags/rocm-6.4.0.tar.gz" ], "version": "6.4.0" }, { "downloads": [ "https://github.com/ROCm/rocJPEG/archive/refs/tags/rocm-6.4.1.tar.gz" ], "version": "6.4.1" }, { "downloads": [ "https://github.com/ROCm/rocJPEG/archive/refs/tags/rocm-6.4.2.tar.gz" ], "version": "6.4.2" }, { "downloads": [ "https://github.com/ROCm/rocJPEG/archive/refs/tags/rocm-6.4.3.tar.gz" ], "version": "6.4.3" }, { "downloads": [ "https://github.com/ROCm/rocJPEG/archive/refs/tags/rocm-7.0.0.tar.gz" ], "version": "7.0.0" }, { "downloads": [ "https://github.com/ROCm/rocJPEG/archive/refs/tags/rocm-7.0.2.tar.gz" ], "version": "7.0.2" } ] }, "rocketmq": { "alias": [], "categories": [], "dependencies": [ "java" ], "downloads": [ "https://archive.apache.org/dist/rocketmq/5.3.1/rocketmq-all-5.3.1-bin-release.zip" ], "homepages": [ "https://rocketmq.apache.org/" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "rocketmq", "patches": [], "summary": " Apache RocketMQ is a distributed messaging and streaming platform with\nlow latency, high performance and reliability, trillion-level capacity\nand flexible scalability.\n", "version": [ { "downloads": [ "https://archive.apache.org/dist/rocketmq/5.3.1/rocketmq-all-5.3.1-bin-release.zip" ], "version": "5.3.1" } ] }, "rocksdb": { "alias": [], "categories": [], "dependencies": [ "bash", "bzip2", "c", "coreutils", "cxx", "gflags", "gmake", "lz4", "perl", "snappy", "tbb", "which", "zlib-api", "zstd" ], "downloads": [ "https://github.com/facebook/rocksdb/archive/vmaster.tar.gz", "https://github.com/facebook/rocksdb/archive/v10.4.2.tar.gz", "https://github.com/facebook/rocksdb/archive/v9.4.0.tar.gz", "https://github.com/facebook/rocksdb/archive/v9.2.1.tar.gz", "https://github.com/facebook/rocksdb/archive/v8.6.7.tar.gz", "https://github.com/facebook/rocksdb/archive/v8.1.1.tar.gz", "https://github.com/facebook/rocksdb/archive/v7.7.3.tar.gz", "https://github.com/facebook/rocksdb/archive/v7.2.2.tar.gz", "https://github.com/facebook/rocksdb/archive/v6.20.3.tar.gz", "https://github.com/facebook/rocksdb/archive/v6.19.3.tar.gz", "https://github.com/facebook/rocksdb/archive/v6.11.4.tar.gz", "https://github.com/facebook/rocksdb/archive/v6.7.3.tar.gz", "https://github.com/facebook/rocksdb/archive/v6.5.3.tar.gz", 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This library has been ported to\nHIP/ROCm platform, which uses the rocPRIM library. The HIP ported\nlibrary works on HIP/ROCm platforms\n", "version": [ { "downloads": [ "https://github.com/ROCm/rocThrust/archive/rocm-5.7.0.tar.gz" ], "version": "5.7.0" }, { "downloads": [ "https://github.com/ROCm/rocThrust/archive/rocm-5.7.1.tar.gz" ], "version": "5.7.1" }, { "downloads": [ "https://github.com/ROCm/rocThrust/archive/rocm-6.0.0.tar.gz" ], "version": "6.0.0" }, { "downloads": [ "https://github.com/ROCm/rocThrust/archive/rocm-6.0.2.tar.gz" ], "version": "6.0.2" }, { "downloads": [ "https://github.com/ROCm/rocThrust/archive/rocm-6.1.0.tar.gz" ], "version": "6.1.0" }, { "downloads": [ "https://github.com/ROCm/rocThrust/archive/rocm-6.1.1.tar.gz" ], "version": "6.1.1" }, { "downloads": [ "https://github.com/ROCm/rocThrust/archive/rocm-6.1.2.tar.gz" ], "version": "6.1.2" }, { "downloads": [ "https://github.com/ROCm/rocThrust/archive/rocm-6.2.0.tar.gz" ], "version": "6.2.0" }, { "downloads": [ "https://github.com/ROCm/rocThrust/archive/rocm-6.2.1.tar.gz" ], "version": "6.2.1" }, { "downloads": [ "https://github.com/ROCm/rocThrust/archive/rocm-6.2.4.tar.gz" ], "version": "6.2.4" }, { "downloads": [ "https://github.com/ROCm/rocThrust/archive/rocm-6.3.0.tar.gz" ], "version": "6.3.0" }, { "downloads": [ "https://github.com/ROCm/rocThrust/archive/rocm-6.3.1.tar.gz" ], "version": "6.3.1" }, { "downloads": [ "https://github.com/ROCm/rocThrust/archive/rocm-6.3.2.tar.gz" ], "version": "6.3.2" }, { "downloads": [ "https://github.com/ROCm/rocThrust/archive/rocm-6.3.3.tar.gz" ], "version": "6.3.3" }, { "downloads": [ "https://github.com/ROCm/rocThrust/archive/rocm-6.4.0.tar.gz" ], "version": "6.4.0" }, { "downloads": [ "https://github.com/ROCm/rocThrust/archive/rocm-6.4.1.tar.gz" ], "version": "6.4.1" }, { "downloads": [ "https://github.com/ROCm/rocThrust/archive/rocm-6.4.2.tar.gz" ], "version": "6.4.2" }, { "downloads": [ "https://github.com/ROCm/rocThrust/archive/rocm-6.4.3.tar.gz" ], "version": "6.4.3" }, { "downloads": [ "https://github.com/ROCm/rocThrust/archive/rocm-7.0.0.tar.gz" ], "version": "7.0.0" }, { "downloads": [ "https://github.com/ROCm/rocThrust/archive/rocm-7.0.2.tar.gz" ], "version": "7.0.2" } ] }, "roctracer-dev": { "alias": [], "categories": [ "rocm", "detectable" ], "dependencies": [ "c", "cmake", "cxx", "gmake", "hip", "hsa-rocr-dev", "hsakmt-roct", "llvm-amdgpu", "ninja", "py-cppheaderparser", "python", "rocm-core", "rocminfo" ], "downloads": [ "https://github.com/ROCm/roctracer/archive/rocm-7.0.2.tar.gz", "https://github.com/ROCm/roctracer/archive/rocm-7.0.0.tar.gz", "https://github.com/ROCm/roctracer/archive/rocm-6.4.3.tar.gz", "https://github.com/ROCm/roctracer/archive/rocm-6.4.2.tar.gz", "https://github.com/ROCm/roctracer/archive/rocm-6.4.1.tar.gz", "https://github.com/ROCm/roctracer/archive/rocm-6.4.0.tar.gz", "https://github.com/ROCm/roctracer/archive/rocm-6.3.3.tar.gz", "https://github.com/ROCm/roctracer/archive/rocm-6.3.2.tar.gz", "https://github.com/ROCm/roctracer/archive/rocm-6.3.1.tar.gz", "https://github.com/ROCm/roctracer/archive/rocm-6.3.0.tar.gz", "https://github.com/ROCm/roctracer/archive/rocm-6.2.4.tar.gz", "https://github.com/ROCm/roctracer/archive/rocm-6.2.1.tar.gz", "https://github.com/ROCm/roctracer/archive/rocm-6.2.0.tar.gz", "https://github.com/ROCm/roctracer/archive/rocm-6.1.2.tar.gz", "https://github.com/ROCm/roctracer/archive/rocm-6.1.1.tar.gz", "https://github.com/ROCm/roctracer/archive/rocm-6.1.0.tar.gz", "https://github.com/ROCm/roctracer/archive/rocm-6.0.2.tar.gz", "https://github.com/ROCm/roctracer/archive/rocm-6.0.0.tar.gz", "https://github.com/ROCm/roctracer/archive/rocm-5.7.1.tar.gz", "https://github.com/ROCm/roctracer/archive/rocm-5.7.0.tar.gz", "https://github.com/ROCm/roctracer.git" ], "homepages": [ "https://github.com/ROCm/roctracer" ], "licenses": [ "MIT" ], "maintainers": [ "afzpatel", "renjithravindrankannath", "srekolam" ], "name": "roctracer-dev", "patches": [], "summary": "ROC-tracer library: Runtimes Generic Callback/Activity APIs. The goal of\nthe implementation is to provide a generic independent from specific\nruntime profiler to trace API and asyncronous activity.\n", "version": [ { "downloads": [ "https://github.com/ROCm/roctracer/archive/rocm-5.7.0.tar.gz" ], "version": "5.7.0" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/rocm-5.7.1.tar.gz" ], "version": "5.7.1" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/rocm-6.0.0.tar.gz" ], "version": "6.0.0" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/rocm-6.0.2.tar.gz" ], "version": "6.0.2" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/rocm-6.1.0.tar.gz" ], "version": "6.1.0" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/rocm-6.1.1.tar.gz" ], "version": "6.1.1" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/rocm-6.1.2.tar.gz" ], "version": "6.1.2" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/rocm-6.2.0.tar.gz" ], "version": "6.2.0" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/rocm-6.2.1.tar.gz" ], "version": "6.2.1" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/rocm-6.2.4.tar.gz" ], "version": "6.2.4" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/rocm-6.3.0.tar.gz" ], "version": "6.3.0" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/rocm-6.3.1.tar.gz" ], "version": "6.3.1" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/rocm-6.3.2.tar.gz" ], "version": "6.3.2" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/rocm-6.3.3.tar.gz" ], "version": "6.3.3" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/rocm-6.4.0.tar.gz" ], "version": "6.4.0" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/rocm-6.4.1.tar.gz" ], "version": "6.4.1" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/rocm-6.4.2.tar.gz" ], "version": "6.4.2" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/rocm-6.4.3.tar.gz" ], "version": "6.4.3" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/rocm-7.0.0.tar.gz" ], "version": "7.0.0" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/rocm-7.0.2.tar.gz" ], "version": "7.0.2" } ] }, "roctracer-dev-api": { "alias": [], "categories": [ "rocm" ], "dependencies": [ "cxx" ], "downloads": [ "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-7.0.2.tar.gz", "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-7.0.0.tar.gz", "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.4.3.tar.gz", "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.4.2.tar.gz", "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.4.1.tar.gz", "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.4.0.tar.gz", "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.3.3.tar.gz", "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.3.2.tar.gz", "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.3.1.tar.gz", "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.3.0.tar.gz", "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.2.4.tar.gz", "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.2.1.tar.gz", "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.2.0.tar.gz", "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.1.2.tar.gz", "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.1.1.tar.gz", "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.1.0.tar.gz", "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.0.2.tar.gz", "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.0.0.tar.gz", "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-5.7.1.tar.gz", "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-5.7.0.tar.gz", "https://github.com/ROCm/roctracer.git" ], "homepages": [ "https://github.com/ROCm/roctracer" ], "licenses": [ "MIT" ], "maintainers": [ "afzpatel", "renjithravindrankannath", "srekolam" ], "name": "roctracer-dev-api", "patches": [], "summary": "ROC-tracer API. Installs the API header files of the roctracer-dev\npackage, mainly to avoid circular dependencies in the ROCm ecosystem.\nFor the ROC-tracer library, please check out roctracer-dev.\n", "version": [ { "downloads": [ "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-5.7.0.tar.gz" ], "version": "5.7.0" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-5.7.1.tar.gz" ], "version": "5.7.1" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.0.0.tar.gz" ], "version": "6.0.0" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.0.2.tar.gz" ], "version": "6.0.2" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.1.0.tar.gz" ], "version": "6.1.0" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.1.1.tar.gz" ], "version": "6.1.1" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.1.2.tar.gz" ], "version": "6.1.2" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.2.0.tar.gz" ], "version": "6.2.0" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.2.1.tar.gz" ], "version": "6.2.1" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.2.4.tar.gz" ], "version": "6.2.4" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.3.0.tar.gz" ], "version": "6.3.0" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.3.1.tar.gz" ], "version": "6.3.1" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.3.2.tar.gz" ], "version": "6.3.2" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.3.3.tar.gz" ], "version": "6.3.3" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.4.0.tar.gz" ], "version": "6.4.0" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.4.1.tar.gz" ], "version": "6.4.1" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.4.2.tar.gz" ], "version": "6.4.2" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-6.4.3.tar.gz" ], "version": "6.4.3" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-7.0.0.tar.gz" ], "version": "7.0.0" }, { "downloads": [ "https://github.com/ROCm/roctracer/archive/refs/tags/rocm-7.0.2.tar.gz" ], "version": "7.0.2" } ] }, "rocwmma": { "alias": [], "categories": [ "rocm" ], "dependencies": [ "c", "cmake", "cxx", "gmake", "googletest", "hip", "llvm-amdgpu", "ninja", "rocblas", "rocm-cmake", "rocm-openmp-extras", "rocm-smi-lib" ], "downloads": [ "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-7.0.2.tar.gz", "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-7.0.0.tar.gz", "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.4.3.tar.gz", "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.4.2.tar.gz", "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.4.1.tar.gz", "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.4.0.tar.gz", "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.3.3.tar.gz", "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.3.2.tar.gz", "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.3.1.tar.gz", "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.3.0.tar.gz", "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.2.4.tar.gz", "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.2.1.tar.gz", "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.2.0.tar.gz", "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.1.2.tar.gz", "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.1.1.tar.gz", "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.1.0.tar.gz", "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.0.2.tar.gz", "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.0.0.tar.gz", "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-5.7.1.tar.gz", "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-5.7.0.tar.gz", "https://github.com/ROCm/rocWMMA.git" ], "homepages": [ "https://github.com/ROCm/rocWMMA" ], "licenses": [ "MIT" ], "maintainers": [ "afzpatel", "renjithravindrankannath", "srekolam" ], "name": "rocwmma", "patches": [ "0001-add-rocm-smi-lib-path-for-building-tests.patch when @:6.3", "0002-use-find-package-rocm-smi.patch when @6.4" ], "summary": "AMD's C++ library for accelerating mixed precision matrix multiplication\nand accumulation (MFMA) operations leveraging specialized GPU matrix\ncores. rocWMMA provides a C++ API to facilitate breaking down matrix\nmultiply-accumulate problems into fragments and using them in block-wise\noperations that are distributed in parallel across GPU wavefronts. The\nAPI is a header library of GPU device code meaning that matrix core\nacceleration may be compiled directly into your kernel device code. This\ncan benefit from compiler optimization in the generation of kernel\nassembly, and does not incur additional overhead costs of linking to\nexternal runtime libraries or having to launch separate kernels.\n", "version": [ { "downloads": [ "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-5.7.0.tar.gz" ], "version": "5.7.0" }, { "downloads": [ "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-5.7.1.tar.gz" ], "version": "5.7.1" }, { "downloads": [ "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.0.0.tar.gz" ], "version": "6.0.0" }, { "downloads": [ "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.0.2.tar.gz" ], "version": "6.0.2" }, { "downloads": [ "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.1.0.tar.gz" ], "version": "6.1.0" }, { "downloads": [ "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.1.1.tar.gz" ], "version": "6.1.1" }, { "downloads": [ "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.1.2.tar.gz" ], "version": "6.1.2" }, { "downloads": [ "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.2.0.tar.gz" ], "version": "6.2.0" }, { "downloads": [ "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.2.1.tar.gz" ], "version": "6.2.1" }, { "downloads": [ "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.2.4.tar.gz" ], "version": "6.2.4" }, { "downloads": [ "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.3.0.tar.gz" ], "version": "6.3.0" }, { "downloads": [ "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.3.1.tar.gz" ], "version": "6.3.1" }, { "downloads": [ "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.3.2.tar.gz" ], "version": "6.3.2" }, { "downloads": [ "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.3.3.tar.gz" ], "version": "6.3.3" }, { "downloads": [ "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.4.0.tar.gz" ], "version": "6.4.0" }, { "downloads": [ "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.4.1.tar.gz" ], "version": "6.4.1" }, { "downloads": [ "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.4.2.tar.gz" ], "version": "6.4.2" }, { "downloads": [ "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-6.4.3.tar.gz" ], "version": "6.4.3" }, { "downloads": [ "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-7.0.0.tar.gz" ], "version": "7.0.0" }, { "downloads": [ "https://github.com/ROCm/rocWMMA/archive/refs/tags/rocm-7.0.2.tar.gz" ], "version": "7.0.2" } ] }, "rodinia": { "alias": [], "categories": [], "dependencies": [ "cuda", "freeglut", "gl", "glew", "glu", "gmake" ], "downloads": [ "https://www.cs.virginia.edu/~kw5na/lava/Rodinia/Packages/Current/rodinia_3.1.tar.bz2" ], "homepages": [ "https://rodinia.cs.virginia.edu/doku.php" ], "licenses": [], "maintainers": [], "name": "rodinia", "patches": [], "summary": "Rodinia: Accelerating Compute-Intensive Applications with Accelerators\n", "version": [ { "downloads": [ "https://www.cs.virginia.edu/~kw5na/lava/Rodinia/Packages/Current/rodinia_3.1.tar.bz2" ], "version": "3.1" } ] }, "roms": { "alias": [], "categories": [], "dependencies": [ "amdlibm", "c", "curl", "fortran", "gmake", "hdf5", "mpi", "netcdf-c", "netcdf-fortran", "zlib-api" ], "downloads": [ "https://github.com/myroms/roms/archive/refs/tags/roms-4.1.tar.gz", "https://github.com/myroms/roms/archive/refs/tags/roms-4.0.tar.gz", "https://github.com/myroms/roms/archive/refs/tags/roms-3.9.tar.gz", "https://github.com/myroms/roms/archive/refs/tags/roms-3.8.tar.gz" ], "homepages": [ "https://www.myroms.org/" ], "licenses": [], "maintainers": [], "name": "roms", "patches": [], "summary": "ROMS is a free-surface, terrain-following, primitive equations ocean\nmodel widely used by the scientific community for a diverse range of\napplications\n", "version": [ { "downloads": [ "https://github.com/myroms/roms/archive/refs/tags/roms-3.8.tar.gz" ], "version": "3.8" }, { "downloads": [ "https://github.com/myroms/roms/archive/refs/tags/roms-3.9.tar.gz" ], "version": "3.9" }, { "downloads": [ "https://github.com/myroms/roms/archive/refs/tags/roms-4.0.tar.gz" ], "version": "4.0" }, { "downloads": [ "https://github.com/myroms/roms/archive/refs/tags/roms-4.1.tar.gz" ], "version": "4.1" } ] }, "root": { "alias": [], "categories": [ "hep", "detectable" ], "dependencies": [ "arrow", "blas", "c", "cfitsio", "civetweb", "cmake", "cuda", "cudnn", "cxx", "daos", "davix", "dcap", "fcgi", "fftw", "fontconfig", "fortran", "freetype", "ftgl", "giflib", "gl", "gl2ps", "glew", "glibc", "glu", "gmake", "googletest", "graphviz", "gsl", "jemalloc", "jpeg", "libglx", "libice", "libpng", "libsm", "libtiff", "libx11", "libxext", "libxft", "libxml2", "libxpm", "lz4", "musl", "mysql-client", "ncurses", "ninja", "nlohmann-json", "openssl", "oracle-instant-client", "pcre", "pkgconfig", "postgresql", "protobuf", "py-numpy", "pythia6", "pythia8", "python", "qt", "qt-base", "r", "r-rcpp", "r-rinside", "readline", "shadow", "sqlite", "tbb", "unuran", "vc", "vdt", "veccore", "xextproto", "xproto", "xrootd", "xxhash", "xz", "zlib-api", "zstd" ], "downloads": [ "https://root.cern/download/root_vdevelop.source.tar.gz", "https://root.cern/download/root_vmaster.source.tar.gz", "https://root.cern/download/root_v6.38.00.source.tar.gz", "https://root.cern/download/root_v6.36.06.source.tar.gz", "https://root.cern/download/root_v6.36.04.source.tar.gz", "https://root.cern/download/root_v6.36.02.source.tar.gz", "https://root.cern/download/root_v6.36.00.source.tar.gz", "https://root.cern/download/root_v6.32.20.source.tar.gz", "https://root.cern/download/root_v6.32.18.source.tar.gz", "https://root.cern/download/root_v6.32.16.source.tar.gz", "https://root.cern/download/root_v6.32.14.source.tar.gz", "https://root.cern/download/root_v6.32.12.source.tar.gz", "https://root.cern/download/root_v6.32.10.source.tar.gz", "https://root.cern/download/root_v6.32.08.source.tar.gz", "https://root.cern/download/root_v6.32.06.source.tar.gz", "https://root.cern/download/root_v6.32.04.source.tar.gz", "https://root.cern/download/root_v6.32.02.source.tar.gz", "https://root.cern/download/root_v6.32.00.source.tar.gz", "https://github.com/root-project/root.git" ], "homepages": [ "https://root.cern.ch" ], "licenses": [], "maintainers": [ "drbenmorgan", "gartung", "greenc-FNAL", "marcmengel", "vitodb", "vvolkl" ], "name": "root", "patches": [ "format-stringbuf-size.patch", "find-mysql.patch when @:6.16.0", "honor-unuran-switch.patch when @6.08.06:6.13", "root7-webgui.patch when @6.16.00", "https://github.com/root-project/root/commit/a15e883277e51303a61baa3e6890f46b5bb4bfd7.patch?full_index=1 when @6.22:6.22.8", "https://github.com/root-project/root/commit/08ab7e03061e551647d707637957252d121f9c39.patch?full_index=1 when @6.26:6.26.6", "https://github.com/root-project/root/commit/26247b68b3aabad4aea5362bc5a8988103ce8038.patch?full_index=1 when @6.26:6.26.6+root7 ^nlohmann-json@3.11:", "protobuf-config.patch when @:6.30.2 ^cmake@3.9: ^protobuf", "webgui.patch when @6.26.00:6.26.10,6.28.00:6.28.8,6.30.00+webgui", "https://github.com/root-project/root/commit/2f00d6df258906c1f6fe848135a88b836db3077f.patch?full_index=1 when @6.28.6:6.28.12", "https://github.com/root-project/root/commit/14838b35600b08278e69bc3d8d8669773bc11399.patch?full_index=1 when @6.30:6.30.4", "https://github.com/root-project/root/commit/37f59306938f91f3ff2cce963ecbb041591dff43.patch?full_index=1 when @6.32.0:6.32.2" ], "summary": "ROOT is a data analysis framework.\n", "version": [ { "downloads": [ "https://root.cern/download/root_v6.32.00.source.tar.gz" ], "version": "6.32.00" }, { "downloads": [ "https://root.cern/download/root_v6.32.02.source.tar.gz" ], "version": "6.32.02" }, { "downloads": [ "https://root.cern/download/root_v6.32.04.source.tar.gz" ], "version": "6.32.04" }, { "downloads": [ "https://root.cern/download/root_v6.32.06.source.tar.gz" ], "version": "6.32.06" }, { "downloads": [ "https://root.cern/download/root_v6.32.08.source.tar.gz" ], "version": "6.32.08" }, { "downloads": [ "https://root.cern/download/root_v6.32.10.source.tar.gz" ], "version": "6.32.10" }, { "downloads": [ "https://root.cern/download/root_v6.32.12.source.tar.gz" ], "version": "6.32.12" }, { "downloads": [ "https://root.cern/download/root_v6.32.14.source.tar.gz" ], "version": "6.32.14" }, { "downloads": [ "https://root.cern/download/root_v6.32.16.source.tar.gz" ], "version": "6.32.16" }, { "downloads": [ "https://root.cern/download/root_v6.32.18.source.tar.gz" ], "version": "6.32.18" }, { "downloads": [ "https://root.cern/download/root_v6.32.20.source.tar.gz" ], "version": "6.32.20" }, { "downloads": [ "https://root.cern/download/root_v6.36.00.source.tar.gz" ], "version": "6.36.00" }, { "downloads": [ "https://root.cern/download/root_v6.36.02.source.tar.gz" ], "version": "6.36.02" }, { "downloads": [ "https://root.cern/download/root_v6.36.04.source.tar.gz" ], "version": "6.36.04" }, { "downloads": [ "https://root.cern/download/root_v6.36.06.source.tar.gz" ], "version": "6.36.06" }, { "downloads": [ "https://root.cern/download/root_v6.38.00.source.tar.gz" ], "version": "6.38.00" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/root-project/root.git" } ], "version": "develop" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/root-project/root.git" } ], "version": "master" } ] }, "rosco": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "fortran", "gmake", "ninja" ], "downloads": [ "https://github.com/NREL/ROSCO/archive/refs/tags/vdevelop.tar.gz", "https://github.com/NREL/ROSCO/archive/refs/tags/vmain.tar.gz", "https://github.com/NREL/ROSCO/archive/refs/tags/v2.9.0.tar.gz", "https://github.com/NREL/ROSCO/archive/refs/tags/v2.8.0.tar.gz", "https://github.com/NREL/ROSCO/archive/refs/tags/v2.7.0.tar.gz", "https://github.com/NREL/ROSCO/archive/refs/tags/v2.6.0.tar.gz", "https://github.com/NREL/ROSCO/archive/refs/tags/v2.5.1.tar.gz", "https://github.com/NREL/ROSCO.git" ], "homepages": [ "https://rosco.readthedocs.io/en/latest/" ], "licenses": [], "maintainers": [ "dzalkind", "ndevelder" ], "name": "rosco", "patches": [ "intel-oneapi-2x.patch when @2.5:2.8 %oneapi", "intel-oneapi-29.patch when @2.9.0:2.9.1 %oneapi" ], "summary": " ROSCO controls package for OpenFAST from NREL Note: this only builds\nROSCO controls library for inclusion with OpenFAST If the toolbox or\ntuning scripts are needed, please build manually\n", "version": [ { "downloads": [ "https://github.com/NREL/ROSCO/archive/refs/tags/v2.5.1.tar.gz" ], "version": "2.5.1" }, { "downloads": [ "https://github.com/NREL/ROSCO/archive/refs/tags/v2.6.0.tar.gz" ], "version": "2.6.0" }, { "downloads": [ "https://github.com/NREL/ROSCO/archive/refs/tags/v2.7.0.tar.gz" ], "version": "2.7.0" }, { "downloads": [ "https://github.com/NREL/ROSCO/archive/refs/tags/v2.8.0.tar.gz" ], "version": "2.8.0" }, { "downloads": [ "https://github.com/NREL/ROSCO/archive/refs/tags/v2.9.0.tar.gz" ], "version": "2.9.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/NREL/ROSCO.git" } ], "version": "develop" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/NREL/ROSCO.git" } ], "version": "main" } ] }, "rose": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "bison", "boost", "c", "cxx", "flex", "git", "gmake", "gnuconfig", "java", "libgcrypt", "libtool", "mvapich2", "py-binwalk", "z3" ], "downloads": [ "https://github.com/rose-compiler/rose/archive/vdevelop.zip", "https://github.com/rose-compiler/rose/archive/v0.9.13.0.zip", "https://github.com/rose-compiler/rose.git" ], "homepages": [ "http://rosecompiler.org/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "pinnown" ], "name": "rose", "patches": [], "summary": "A compiler infrastructure to build source-to-source program\ntransformation and analysis tools. (Developed at Lawrence Livermore\nNational Lab)\n", "version": [ { "downloads": [ "https://github.com/rose-compiler/rose/archive/v0.9.13.0.zip" ], "version": "0.9.13.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/rose-compiler/rose.git" } ], "version": "develop" } ] }, "ross": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "gmake", "mpi", "ninja" ], "downloads": [ "https://github.com/ROSS-org/ROSS/archive/vdevelop.tar.gz", "https://github.com/ROSS-org/ROSS/archive/vmaster.tar.gz", "https://github.com/ROSS-org/ROSS/archive/v8.0.0.tar.gz", "https://github.com/ROSS-org/ROSS/archive/v7.2.0.tar.gz", "https://github.com/ROSS-org/ROSS/archive/v7.1.1.tar.gz", "https://github.com/ROSS-org/ROSS/archive/v7.1.0.tar.gz", "https://github.com/ROSS-org/ROSS/archive/v7.0.1.tar.gz", "https://github.com/ROSS-org/ROSS/archive/v7.0.0.tar.gz", "https://github.com/ROSS-org/ROSS/archive/v6.0.0.tar.gz", "https://github.com/ROSS-org/ROSS.git" ], "homepages": [ "https://ross-org.github.io" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "ross", "patches": [], "summary": "Rensselaer Optimistic Simulation System\n", "version": [ { "downloads": [ "https://github.com/ROSS-org/ROSS/archive/v6.0.0.tar.gz" ], "version": "6.0.0" }, { "downloads": [ "https://github.com/ROSS-org/ROSS/archive/v7.0.0.tar.gz" ], "version": "7.0.0" }, { "downloads": [ "https://github.com/ROSS-org/ROSS/archive/v7.0.1.tar.gz" ], "version": "7.0.1" }, { "downloads": [ "https://github.com/ROSS-org/ROSS/archive/v7.1.0.tar.gz" ], "version": "7.1.0" }, { "downloads": [ "https://github.com/ROSS-org/ROSS/archive/v7.1.1.tar.gz" ], "version": "7.1.1" }, { "downloads": [ "https://github.com/ROSS-org/ROSS/archive/v7.2.0.tar.gz" ], "version": "7.2.0" }, { "downloads": [ "https://github.com/ROSS-org/ROSS/archive/v8.0.0.tar.gz" ], "version": "8.0.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/ROSS-org/ROSS.git" } ], "version": "develop" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/ROSS-org/ROSS.git" } ], "version": "master" } ] }, "routinator": { "alias": [], "categories": [], "dependencies": [ "rust" ], "downloads": [ "https://github.com/NLnetLabs/routinator/archive/refs/tags/v0.14.0.tar.gz", "https://github.com/NLnetLabs/routinator/archive/refs/tags/v0.12.1.tar.gz" ], "homepages": [ "https://nlnetlabs.nl/projects/rpki/about/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "aweits" ], "name": "routinator", "patches": [], "summary": "An RPKI Validator and RTR server written in Rust\n", "version": [ { "downloads": [ "https://github.com/NLnetLabs/routinator/archive/refs/tags/v0.12.1.tar.gz" ], "version": "0.12.1" }, { "downloads": [ "https://github.com/NLnetLabs/routinator/archive/refs/tags/v0.14.0.tar.gz" ], "version": "0.14.0" } ] }, "routino": { "alias": [], "categories": [], "dependencies": [ "bzip2", "c", "cxx", "gmake", "zlib-api" ], "downloads": [ "https://www.routino.org/download/routino-3.3.3.tgz", "https://www.routino.org/download/routino-3.2.tgz" ], "homepages": [ "https://www.routino.org" ], "licenses": [], "maintainers": [], "name": "routino", "patches": [], "summary": "Routino is an application for finding a route between two points using\nthe dataset of topographical information collected by\nhttps://www.OpenStreetMap.org/.\n", "version": [ { "downloads": [ "https://www.routino.org/download/routino-3.2.tgz" ], "version": "3.2" }, { "downloads": [ "https://www.routino.org/download/routino-3.3.3.tgz" ], "version": "3.3.3" } ] }, "rpc": { "alias": [ { "alias_for": "libtirpc", "name": "rpc" } ], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "krb5", "libtool" ], "downloads": [ "https://sourceforge.net/projects/libtirpc/files/libtirpc/1.3.7/libtirpc-1.3.7.tar.bz2/download", "https://sourceforge.net/projects/libtirpc/files/libtirpc/1.3.3/libtirpc-1.3.3.tar.bz2/download", "https://sourceforge.net/projects/libtirpc/files/libtirpc/1.2.6/libtirpc-1.2.6.tar.bz2/download", "https://sourceforge.net/projects/libtirpc/files/libtirpc/1.1.4/libtirpc-1.1.4.tar.bz2/download" ], "homepages": [ "https://sourceforge.net/projects/libtirpc/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "libtirpc", "patches": [ "libtirpc-fix-ipv6-gss-macos-1.3.7.patch when @1.3.7 platform=darwin", "libtirpc-remove-pipe-flag-for-nvhpc.patch when %nvhpc", "macos-1.3.3.patch when @1.3.3 platform=darwin" ], "summary": "Libtirpc is a port of Suns Transport-Independent RPC library to Linux.\n", "version": [ { "downloads": [ "https://sourceforge.net/projects/libtirpc/files/libtirpc/1.1.4/libtirpc-1.1.4.tar.bz2/download" ], "version": "1.1.4" }, { "downloads": [ "https://sourceforge.net/projects/libtirpc/files/libtirpc/1.2.6/libtirpc-1.2.6.tar.bz2/download" ], "version": "1.2.6" }, { "downloads": [ "https://sourceforge.net/projects/libtirpc/files/libtirpc/1.3.3/libtirpc-1.3.3.tar.bz2/download" ], "version": "1.3.3" }, { "downloads": [ "https://sourceforge.net/projects/libtirpc/files/libtirpc/1.3.7/libtirpc-1.3.7.tar.bz2/download" ], "version": "1.3.7" } ] }, "rpcsvc-proto": { "alias": [], "categories": [], "dependencies": [ "c", "gettext", "gmake", "gnuconfig" ], "downloads": [ "https://github.com/thkukuk/rpcsvc-proto/releases/download/v1.4.4/rpcsvc-proto-1.4.4.tar.xz", "https://github.com/thkukuk/rpcsvc-proto/releases/download/v1.4.3/rpcsvc-proto-1.4.3.tar.xz", "https://github.com/thkukuk/rpcsvc-proto/releases/download/v1.4.2/rpcsvc-proto-1.4.2.tar.xz", "https://github.com/thkukuk/rpcsvc-proto/releases/download/v1.4.1/rpcsvc-proto-1.4.1.tar.xz", "https://github.com/thkukuk/rpcsvc-proto/releases/download/v1.4/rpcsvc-proto-1.4.tar.xz" ], "homepages": [ "https://github.com/thkukuk/rpcsvc-proto" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "rpcsvc-proto", "patches": [], "summary": "rpcsvc protocol definitions from glibc.\n", "version": [ { "downloads": [ "https://github.com/thkukuk/rpcsvc-proto/releases/download/v1.4/rpcsvc-proto-1.4.tar.xz" ], "version": "1.4" }, { "downloads": [ "https://github.com/thkukuk/rpcsvc-proto/releases/download/v1.4.1/rpcsvc-proto-1.4.1.tar.xz" ], "version": "1.4.1" }, { "downloads": [ "https://github.com/thkukuk/rpcsvc-proto/releases/download/v1.4.2/rpcsvc-proto-1.4.2.tar.xz" ], "version": "1.4.2" }, { "downloads": [ "https://github.com/thkukuk/rpcsvc-proto/releases/download/v1.4.3/rpcsvc-proto-1.4.3.tar.xz" ], "version": "1.4.3" }, { "downloads": [ "https://github.com/thkukuk/rpcsvc-proto/releases/download/v1.4.4/rpcsvc-proto-1.4.4.tar.xz" ], "version": "1.4.4" } ] }, "rpm": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "berkeley-db", "bzip2", "c", "cxx", "doxygen", "file", "gettext", "gmake", "gnuconfig", "gnupg", "gzip", "iconv", "libarchive", "libcap", "libgcrypt", "libtool", "lua", "m4", "openssl", "pandoc", "pkgconfig", "popt", "python", "sqlite", "unzip", "xz", "zlib-api", "zstd" ], "downloads": [ "https://github.com/rpm-software-management/rpm/archive/rpm-master-release.tar.gz", "https://github.com/rpm-software-management/rpm/archive/rpm-4.18.2-release.tar.gz", "https://github.com/rpm-software-management/rpm/archive/rpm-4.16.1.2-release.tar.gz", "https://github.com/rpm-software-management/rpm/archive/rpm-4.16.0-release.tar.gz", "https://github.com/rpm-software-management/rpm.git" ], "homepages": [ "https://github.com/rpm-software-management/rpm" ], "licenses": [], "maintainers": [ "haampie" ], "name": "rpm", "patches": [], "summary": " The RPM package manager https://github.com/rpm-software-\nmanagement/rpm/blob/master/INSTALL Note that debugedit is an additional\ntool that *should* compile with adding libdw and elfutils, but the\nlibrary (as of 4.16.1.2) is being removed from rpm and will be put\nsomewhere else.\n", "version": [ { "downloads": [ "https://github.com/rpm-software-management/rpm/archive/rpm-4.16.0-release.tar.gz" ], "version": "4.16.0" }, { "downloads": [ "https://github.com/rpm-software-management/rpm/archive/rpm-4.16.1.2-release.tar.gz" ], "version": "4.16.1.2" }, { "downloads": [ "https://github.com/rpm-software-management/rpm/archive/rpm-4.18.2-release.tar.gz" ], "version": "4.18.2" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/rpm-software-management/rpm.git" } ], "version": "master" } ] }, "rpp": { "alias": [], "categories": [ "rocm" ], "dependencies": [ "boost", "bzip2", "cmake", "cxx", "ffmpeg", "gmake", "half", "hip", "hwloc", "libjpeg-turbo", "ninja", "opencv", "pkgconfig", "rocm-opencl", "rocm-openmp-extras" ], "downloads": [ "https://github.com/ROCm/rpp/archive/refs/tags/rocm-6.4.3.tar.gz", "https://github.com/ROCm/rpp.git" ], "homepages": [ "https://github.com/ROCm/rpp" ], "licenses": [ "MIT" ], "maintainers": [ "afzpatel", "srekolam" ], "name": "rpp", "patches": [ "0001-include-half-openmp-through-spack-package.patch when @:5.7", "0002-declare-handle-in-header.patch when @:6.4", "0003-include-half-through-spack-package.patch when @6.0:6.3", "0003-changes-to-rpp-unit-tests.patch when @5.7:6.0+add_tests", "0003-changes-to-rpp-unit-tests-6.1.patch when @6.1+add_tests" ], "summary": "Radeon Performance Primitives (RPP) library is a comprehensive high-\nperformance computer vision library for AMD (CPU and GPU) with HIP and\nOPENCL back-ends\n", "version": [ { "downloads": [ "https://github.com/ROCm/rpp/archive/refs/tags/rocm-5.7.0.tar.gz" ], "version": "5.7.0" }, { "downloads": [ "https://github.com/ROCm/rpp/archive/refs/tags/rocm-5.7.1.tar.gz" ], "version": "5.7.1" }, { "downloads": [ "https://github.com/ROCm/rpp/archive/refs/tags/rocm-6.0.0.tar.gz" ], "version": "6.0.0" }, { "downloads": [ "https://github.com/ROCm/rpp/archive/refs/tags/rocm-6.0.2.tar.gz" ], "version": "6.0.2" }, { "downloads": [ 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] }, "rstart": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/rstart-1.0.6.tar.gz", "https://www.x.org/archive/individual/app/rstart-1.0.5.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/rstart" ], "licenses": [], "maintainers": [], "name": "rstart", "patches": [], "summary": "This package includes both the client and server sides implementing the\nprotocol described in the \"A Flexible Remote Execution Protocol Based on\nrsh\" paper found in the specs/ subdirectory. This software has been\ndeprecated in favor of the X11 forwarding provided in common ssh\nimplementations.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/rstart-1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://www.x.org/archive/individual/app/rstart-1.0.6.tar.gz" ], "version": "1.0.6" } ] }, "rstudio": { "alias": [], "categories": [], "dependencies": [ "ant", "boost", "c", "cmake", "cxx", "gmake", "icu4c", "java", "ninja", "node-js", "pandoc", "patchelf", "pkgconfig", "qt", "r", "r-base64enc", "r-digest", "r-evaluate", "r-glue", "r-highr", "r-htmltools", "r-jsonlite", "r-knitr", "r-magrittr", "r-markdown", "r-mime", "r-rmarkdown", "r-stringi", "r-stringr", "r-tinytex", "r-xfun", "r-yaml", "soci", "yaml-cpp", "yarn" ], "downloads": [ "https://github.com/rstudio/rstudio/archive/refs/tags/v1.4.1717.tar.gz" ], "homepages": [ "https://www.rstudio.com/products/rstudio/" ], "licenses": [], "maintainers": [], "name": "rstudio", "patches": [ 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"licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "rt-tests", "patches": [], "summary": " Suite of real-time tests - cyclictest, hwlatdetect, pip_stress,\npi_stress, pmqtest, ptsematest, rt-migrate-test, sendme, signaltest,\nsigwaittest, svsematest.\n", "version": [ { "downloads": [ "https://git.kernel.org/pub/scm/utils/rt-tests/rt-tests.git/snapshot/rt-tests-1.2.tar.gz" ], "version": "1.2" } ] }, "rtags": { "alias": [], "categories": [], "dependencies": [ "bash-completion", "c", "cmake", "cxx", "gmake", "llvm", "lua", "ninja", "openssl", "pkgconfig", "zlib-api" ], "downloads": [ "https://github.com/Andersbakken/rtags/releases/download/v2.38/rtags-2.38.tar.gz", "https://github.com/Andersbakken/rtags/releases/download/v2.20/rtags-2.20.tar.gz", "https://github.com/Andersbakken/rtags/releases/download/v2.17/rtags-2.17.tar.gz" ], "homepages": [ "https://github.com/Andersbakken/rtags/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [ "vmiheer" ], "name": "rtags", "patches": [ "add_string_iterator_erase_compile_check.patch when @2.12" ], "summary": "RTags is a client/server application that indexes C/C++ code\n", "version": [ { "downloads": [ "https://github.com/Andersbakken/rtags/releases/download/v2.17/rtags-2.17.tar.gz" ], "version": "2.17" }, { "downloads": [ "https://github.com/Andersbakken/rtags/releases/download/v2.20/rtags-2.20.tar.gz" ], "version": "2.20" }, { "downloads": [ "https://github.com/Andersbakken/rtags/releases/download/v2.38/rtags-2.38.tar.gz" ], "version": "2.38" } ] }, "rtax": { "alias": [], "categories": [], "dependencies": [ "usearch" ], "downloads": [ "http://static.davidsoergel.com/rtax-0.984.tgz" ], "homepages": [ "https://github.com/davidsoergel/rtax" ], "licenses": [], "maintainers": [], "name": "rtax", "patches": [], "summary": "Rapid and accurate taxonomic classification of short paired-end sequence\nreads from the 16S ribosomal RNA gene\n", "version": [ { "downloads": [ "http://static.davidsoergel.com/rtax-0.984.tgz" ], "version": "0.984" } ] }, "rtmpdump": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnutls", "openssl", "zlib-api" ], "downloads": [ "https://git.ffmpeg.org/rtmpdump.git" ], "homepages": [ "https://rtmpdump.mplayerhq.hu/" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [ "tobbez" ], "name": "rtmpdump", "patches": [ "missing-include.patch", "rtmpdump-fix-chunk-size.patch", "rtmpdump-openssl-1.1-v2.patch", "rtmpdump-swf_vertification_type_2.patch", "rtmpdump-swf_vertification_type_2_part_2.patch" ], "summary": "rtmpdump is a toolkit for RTMP streams.\n", "version": [ { "repositories": [ { "commit": "f1b83c10d8beb43fcc70a6e88cf4325499f25857", "type": "git", "url": "https://git.ffmpeg.org/rtmpdump.git" } ], "version": "2021-02-19" } ] }, "ruby": { "alias": [], "categories": [ "windows", "detectable" ], "dependencies": [ "c", "cxx", "gmake", "gnuconfig", "libffi", "libx11", "libyaml", "pkgconfig", "readline", "rust", "tcl", "tk", "zlib-api" ], "downloads": [ 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"ruby" ], "downloads": [ "https://github.com/asciidoctor/asciidoctor/archive/v2.0.17.tar.gz", "https://github.com/asciidoctor/asciidoctor/archive/v2.0.10.tar.gz" ], "homepages": [ "https://asciidoctor.org/" ], "licenses": [ "MIT" ], "maintainers": [ "Kerilk" ], "name": "ruby-asciidoctor", "patches": [], "summary": "A fast, open source text processor and publishing toolchain for\nconverting AsciiDoc content to HTML 5, DocBook 5, and other formats.\n", "version": [ { "downloads": [ "https://github.com/asciidoctor/asciidoctor/archive/v2.0.10.tar.gz" ], "version": "2.0.10" }, { "downloads": [ "https://github.com/asciidoctor/asciidoctor/archive/v2.0.17.tar.gz" ], "version": "2.0.17" } ] }, "ruby-charlock-holmes": { "alias": [], "categories": [], "dependencies": [ "icu4c", "ruby" ], "downloads": [ "https://rubygems.org/downloads/charlock_holmes-0.7.9.gem" ], "homepages": [ "https://github.com/brianmario/charlock_holmes" ], "licenses": [ "MIT" ], "maintainers": [ "Kerilk" ], "name": 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"http://bioinf.cs.ucl.ac.uk/psipred/" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "s4pred", "patches": [], "summary": "A tool for accurate prediction of a protein's secondary structure from\nonly its amino acid sequence with no evolutionary information\n", "version": [ { "downloads": [ "https://github.com/psipred/s4pred/archive/refs/tags/v1.2.0.tar.gz" ], "version": "1.2.0" } ] }, "sabre": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "zlib-api" ], "downloads": [ "https://github.com/najoshi/sabre.git" ], "homepages": [ "https://github.com/najoshi/sabre" ], "licenses": [ "MIT" ], "maintainers": [], "name": "sabre", "patches": [], "summary": "Sabre is a tool that will demultiplex barcoded reads into separate\nfiles. It will work on both single-end and paired-end data in fastq\nformat. It simply compares the provided barcodes with each read and\nseparates the read into its appropriate barcode file, after stripping\nthe barcode from the read (and also stripping the quality values of the\nbarcode bases). If a read does not have a recognized barcode, then it is\nput into the unknown file.\n", "version": [ { "repositories": [ { "commit": "039a55e500ba07b7e6432ea6ec2ddcfb3471d949", "type": "git", "url": "https://github.com/najoshi/sabre.git" } ], "version": "2013-09-27" } ] }, "saga-gis": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "cxx", "gdal", "gmake", "gnuconfig", "hdf5", "jpeg", "libharu", "libsm", "libtool", "m4", "opencv", "postgresql", "proj", "python", "python-venv", "swig", "unixodbc", "wxwidgets" ], "downloads": [ "https://prdownloads.sourceforge.net/SAGA%20-%20develop/saga-develop.tar.gz", "https://prdownloads.sourceforge.net/SAGA%20-%207.4.0/saga-7.4.0.tar.gz", "https://prdownloads.sourceforge.net/SAGA%20-%207.3.0/saga-7.3.0.tar.gz", "git://git.code.sf.net/p/saga-gis/code" ], "homepages": [ "http://saga-gis.org/" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "saga-gis", "patches": [], "summary": " SAGA is a GIS for Automated Geoscientific Analyses and has been\ndesigned for an easy and effective implementation of spatial algorithms.\nIt offers a comprehensive, growing set of geoscientific methods and\nprovides an easily approachable user interface with many visualisation\noptions\n", "version": [ { "repositories": [ { "branch": "release-7.3.0", "type": "git", "url": "git://git.code.sf.net/p/saga-gis/code" } ], "version": "7.3.0" }, { "repositories": [ { "branch": "release-7.4.0", "type": "git", "url": "git://git.code.sf.net/p/saga-gis/code" } ], "version": "7.4.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "git://git.code.sf.net/p/saga-gis/code" } ], "version": "develop" } ] }, "sailfish": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "cmake", "cxx", "gmake", "ninja", "tbb" ], "downloads": [ "https://github.com/kingsfordgroup/sailfish/archive/v0.10.1.tar.gz" ], "homepages": [ "https://www.cs.cmu.edu/~ckingsf/software/sailfish" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "sailfish", "patches": [], "summary": "Sailfish is a tool for transcript quantification from RNA-seq data.\n", "version": [ { "downloads": [ "https://github.com/kingsfordgroup/sailfish/archive/v0.10.1.tar.gz" ], "version": "0.10.1" } ] }, "salmon": { "alias": [], "categories": [], "dependencies": [ "boost", "bzip2", "c", "cereal", "cmake", "curl", "cxx", "gmake", "htslib", "jemalloc", "libdivsufsort", "libgff", "ninja", "pkgconfig", "staden-io-lib", "tbb", "xz", "zlib-api" ], "downloads": [ "https://github.com/COMBINE-lab/salmon/archive/v1.10.3.tar.gz", "https://github.com/COMBINE-lab/salmon/archive/v1.10.2.tar.gz", "https://github.com/COMBINE-lab/salmon/archive/v1.9.0.tar.gz", "https://github.com/COMBINE-lab/salmon/archive/v1.4.0.tar.gz", "https://github.com/COMBINE-lab/salmon/archive/v0.14.1.tar.gz", "https://github.com/COMBINE-lab/salmon/archive/v0.12.0.tar.gz", "https://github.com/COMBINE-lab/salmon/archive/v0.9.1.tar.gz", "https://github.com/COMBINE-lab/salmon/archive/v0.8.2.tar.gz" ], "homepages": [ "https://combine-lab.github.io/salmon/" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [ "snehring" ], "name": "salmon", "patches": [ "fix_hts.patch when @1.10.2", "https://github.com/COMBINE-lab/salmon/commit/ffb2a11.patch?full_index=1 when @:1.10.1 %gcc@13:" ], "summary": "Salmon is a tool for quantifying the expression of transcripts using\nRNA-seq data.\n", "version": [ { "downloads": [ "https://github.com/COMBINE-lab/salmon/archive/v0.12.0.tar.gz" ], "version": "0.12.0" }, { "downloads": [ "https://github.com/COMBINE-lab/salmon/archive/v0.14.1.tar.gz" ], "version": "0.14.1" }, { "downloads": [ "https://github.com/COMBINE-lab/salmon/archive/v0.8.2.tar.gz" ], "version": "0.8.2" }, { "downloads": [ "https://github.com/COMBINE-lab/salmon/archive/v0.9.1.tar.gz" ], "version": "0.9.1" }, { "downloads": [ "https://github.com/COMBINE-lab/salmon/archive/v1.10.2.tar.gz" ], "version": "1.10.2" }, { "downloads": [ "https://github.com/COMBINE-lab/salmon/archive/v1.10.3.tar.gz" ], "version": "1.10.3" }, { "downloads": [ "https://github.com/COMBINE-lab/salmon/archive/v1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://github.com/COMBINE-lab/salmon/archive/v1.9.0.tar.gz" ], "version": "1.9.0" } ] }, "salmon-tddft": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "eigenexa", "fortran", "gmake", "lapack", "libxc", "mpi", "ninja", "scalapack" ], "downloads": [ "https://salmon-tddft.jp/download/SALMON-v.2.0.0.tar.gz", "https://salmon-tddft.jp/download/SALMON-v.1.2.1.tar.gz" ], "homepages": [ "https://salmon-tddft.jp" ], "licenses": [ "BSD-3-Clause-Open-MPI" ], "maintainers": [], "name": "salmon-tddft", "patches": [ "fjmpi.patch when @2.0.0: %fj", "v2.0.libxc-5.0.patch when @2.0.0+libxc", "cmakefix.patch when +scalapack" ], "summary": "SALMON is an open-source computer program for ab-initio quantum-\nmechanical calculations of electron dynamics at the nanoscale that takes\nplace in various situations of light-matter interactions. It is based on\ntime-dependent density functional theory, solving time-dependent Kohn-\nSham equation in real time and real space with norm-conserving\npseudopotentials.\n", "version": [ { "downloads": [ "https://salmon-tddft.jp/download/SALMON-v.1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://salmon-tddft.jp/download/SALMON-v.2.0.0.tar.gz" ], "version": "2.0.0" } ] }, "salome-configuration": { "alias": [], "categories": [], "dependencies": [], "downloads": [ "https://github.com/SalomePlatform/configuration.git" ], "homepages": [ "https://www.salome-platform.org" ], "licenses": [], "maintainers": [ "franciskloss" ], "name": "salome-configuration", "patches": [ "SalomeMacros.patch", "FindSalomeHDF5.patch when @:9.7.0" ], "summary": "salome-configuration is a part of SALOME platform and define general\nbuild tools for the platform.\n", "version": [ { "downloads": [ "https://github.com/SalomePlatform/configuration/archive/refs/tags/V9_11_0.tar.gz" ], "version": "9.11.0" }, { "downloads": [ "https://github.com/SalomePlatform/configuration/archive/refs/tags/V9_12_0.tar.gz" ], "version": "9.12.0" }, { "downloads": [ "https://github.com/SalomePlatform/configuration/archive/refs/tags/V9_13_0.tar.gz" ], "version": "9.13.0" }, { "downloads": [ "https://github.com/SalomePlatform/configuration/archive/refs/tags/V9_14_0.tar.gz" ], "version": "9.14.0" }, { "downloads": [ "https://github.com/SalomePlatform/configuration/archive/refs/tags/V9_15_0.tar.gz" ], "version": "9.15.0" } ] }, "salome-med": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "hdf5", "mpi", "ninja" ], "downloads": [], "homepages": [ "https://docs.salome-platform.org/latest/dev/MEDCoupling/developer/med-file.html" ], "licenses": [ "LGPL-3.0-only" ], "maintainers": [ "franciskloss" ], "name": "salome-med", "patches": [ "MAJ_400_410_champs.patch when @4.1.0+static" ], "summary": "salome-med is the MED file format that is the SALOME platform standard\nfile for meshes and fields and salome-med is based on HDF5 library.\nNote: the salome-med recipe is deprecated, use the med package instead\n", "version": [] }, "salome-medcoupling": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "cmake", "cppunit", "cxx", "gmake", "libxml2", "med", "metis", "mpi", "ninja", "py-numpy", "py-scipy", "python", "rpc", "salome-configuration", "salome-med", "scotch", "swig" ], "downloads": [ "https://github.com/SalomePlatform/medcoupling.git" ], "homepages": [ "https://docs.salome-platform.org/latest/dev/MEDCoupling/developer/index.html" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [ "franciskloss" ], "name": "salome-medcoupling", "patches": [], "summary": "salome-medcoupling is a part of SALOME platform to manipulate meshes and\nfields in memory, and uses MED format for files.\n", "version": [ { "downloads": [ "https://github.com/SalomePlatform/medcoupling/archive/refs/tags/V9_11_0.tar.gz" ], "version": "9.11.0" }, { "downloads": [ "https://github.com/SalomePlatform/medcoupling/archive/refs/tags/V9_12_0.tar.gz" ], "version": "9.12.0" }, { "downloads": [ "https://github.com/SalomePlatform/medcoupling/archive/refs/tags/V9_13_0.tar.gz" ], "version": "9.13.0" }, { "downloads": [ "https://github.com/SalomePlatform/medcoupling/archive/refs/tags/V9_14_0.tar.gz" ], "version": "9.14.0" }, { "downloads": [ "https://github.com/SalomePlatform/medcoupling/archive/refs/tags/V9_15_0.tar.gz" ], "version": "9.15.0" } ] }, "salt": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "gmake", "llvm", "ninja" ], "downloads": [ "https://github.com/ParaToolsInc/salt/archive/refs/tags/vmaster.tar.gz", "https://github.com/ParaToolsInc/salt/archive/refs/tags/v0.3.0.tar.gz", "https://github.com/ParaToolsInc/salt/archive/refs/tags/v0.2.0.tar.gz", "https://github.com/ParaToolsInc/salt.git" ], "homepages": [ "https://github.com/ParaToolsInc/salt" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wspear", "zbeekman" ], "name": "salt", "patches": [], "summary": "SALT: A next generation LLVM-based Source Analysis Toolkit for\nperformance instrumentation of HPC applications\n", "version": [ { "downloads": [ "https://github.com/ParaToolsInc/salt/archive/refs/tags/v0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://github.com/ParaToolsInc/salt/archive/refs/tags/v0.3.0.tar.gz" ], "version": "0.3.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/ParaToolsInc/salt.git" } ], "version": "master" } ] }, "sam2p": { "alias": [], "categories": [], "dependencies": [ "c", "cxx" ], "downloads": [ "https://github.com/pts/sam2p/archive/vmaster.tar.gz", "https://github.com/pts/sam2p/archive/v2021-05-04.tar.gz", "https://github.com/pts/sam2p" ], "homepages": [ "https://github.com/pts/sam2p" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [ "robertu94" ], "name": "sam2p", "patches": [], "summary": "A raster to PostScript/PDF image conversion program\n", "version": [ { "repositories": [ { "commit": "f3e9cc0a2df1880a63f9f37c96e3595bca890cfa", "type": "git", "url": "https://github.com/pts/sam2p" } ], "version": "2021-05-04" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/pts/sam2p" } ], "version": "master" } ] }, "sambamba": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "ldc", "python" ], "downloads": [ "https://github.com/lomereiter/sambamba.git" ], "homepages": [ "https://lomereiter.github.io/sambamba/" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "sambamba", "patches": [ "Makefile.patch" ], "summary": "Sambamba: process your BAM data faster (bioinformatics)\n", "version": [ { "repositories": [ { "commit": "63cfd5c7b3053e1f7045dec0b5a569f32ef73d06", "type": "git", "url": "https://github.com/lomereiter/sambamba.git" } ], "version": "0.6.6" } ] }, "samblaster": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake" ], "downloads": [ "https://github.com/GregoryFaust/samblaster/archive/v.0.1.26.tar.gz", "https://github.com/GregoryFaust/samblaster/archive/v.0.1.24.tar.gz", "https://github.com/GregoryFaust/samblaster/archive/v.0.1.23.tar.gz" ], "homepages": [ "https://github.com/GregoryFaust/samblaster" ], "licenses": [ "MIT" ], "maintainers": [], "name": "samblaster", "patches": [], "summary": "A tool to mark duplicates and extract discordant and split reads from\nsam files.\n", "version": [ { "downloads": [ "https://github.com/GregoryFaust/samblaster/archive/v.0.1.23.tar.gz" ], "version": "0.1.23" }, { "downloads": [ "https://github.com/GregoryFaust/samblaster/archive/v.0.1.24.tar.gz" ], "version": "0.1.24" }, { "downloads": [ "https://github.com/GregoryFaust/samblaster/archive/v.0.1.26.tar.gz" ], "version": "0.1.26" } ] }, "samrai": { "alias": [], "categories": [ "radiuss" ], "dependencies": [ "boost", "c", "cxx", "fortran", "gmake", "gnuconfig", "hdf5", "m4", "mpi", "silo", "zlib-api" ], "downloads": [ "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.12.0.tar.gz", "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.11.5.tar.gz", "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.11.4.tar.gz", "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.11.2.tar.gz", "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.11.1.tar.gz", "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.10.0.tar.gz", "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.9.1.tar.gz", "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.8.0.tar.gz", "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.7.3.tar.gz", "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.7.2.tar.gz", "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.6.3-beta.tar.gz", "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.5.2-beta.tar.gz", "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.5.0-beta.tar.gz", "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.4.1-beta.tar.gz", "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.3.3-beta.tar.gz", "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.3.2-beta.tar.gz", "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v2.4.4.tar.gz" ], "homepages": [ "https://computing.llnl.gov/projects/samrai" ], "licenses": [], "maintainers": [], "name": "samrai", "patches": [ "no-tool-build.patch when @3.0.0: %gcc", "https://github.com/IBAMR/IBAMR/releases/download/v0.3.0/ibamr-samrai-fixes.patch?full_index=1 when @2.4.4" ], "summary": "SAMRAI (Structured Adaptive Mesh Refinement Application Infrastructure)\nis an object-oriented C++ software library enables exploration of\nnumerical, algorithmic, parallel computing, and software issues\nassociated with applying structured adaptive mesh refinement (SAMR)\ntechnology in large-scale parallel application development.\n", "version": [ { "downloads": [ "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v2.4.4.tar.gz" ], "version": "2.4.4" }, { "downloads": [ "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.10.0.tar.gz" ], "version": "3.10.0" }, { "downloads": [ "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.11.1.tar.gz" ], "version": "3.11.1" }, { "downloads": [ "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.11.2.tar.gz" ], "version": "3.11.2" }, { "downloads": [ "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.11.4.tar.gz" ], "version": "3.11.4" }, { "downloads": [ "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.11.5.tar.gz" ], "version": "3.11.5" }, { "downloads": [ "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.12.0.tar.gz" ], "version": "3.12.0" }, { "downloads": [ "https://computing.llnl.gov/projects/samrai/download/SAMRAI-v3.3.2-beta.tar.gz" ], "version": 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Spack will search your current directory for the\ndownload file. Alternatively, add this file to a mirror so that Spack\ncan find it. For instructions on how to set up a mirror, see\nhttps://spack.readthedocs.io/en/latest/mirrors.html\n", "version": [ { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/scipoptsuite-7.0.1.tgz" ], "version": "7.0.1" } ] }, "scitokens-cpp": { "alias": [], "categories": [], "dependencies": [ "cmake", "curl", "cxx", "gmake", "jwt-cpp", "ninja", "openssl", "pkgconfig", "sqlite", "uuid" ], "downloads": [ "https://github.com/scitokens/scitokens-cpp/archive/refs/tags/vmaster.tar.gz", "https://github.com/scitokens/scitokens-cpp/archive/refs/tags/v1.1.3.tar.gz", "https://github.com/scitokens/scitokens-cpp/archive/refs/tags/v1.1.2.tar.gz", "https://github.com/scitokens/scitokens-cpp/archive/refs/tags/v1.1.1.tar.gz", "https://github.com/scitokens/scitokens-cpp/archive/refs/tags/v1.1.0.tar.gz", "https://github.com/scitokens/scitokens-cpp/archive/refs/tags/v1.0.2.tar.gz", "https://github.com/scitokens/scitokens-cpp/archive/refs/tags/v1.0.1.tar.gz", "https://github.com/scitokens/scitokens-cpp/archive/refs/tags/v1.0.0.tar.gz", "https://github.com/scitokens/scitokens-cpp/archive/refs/tags/v0.7.3.tar.gz", "https://github.com/scitokens/scitokens-cpp/archive/refs/tags/v0.7.2.tar.gz", "https://github.com/scitokens/scitokens-cpp/archive/refs/tags/v0.7.1.tar.gz", "https://github.com/scitokens/scitokens-cpp/archive/refs/tags/v0.7.0.tar.gz", "https://github.com/scitokens/scitokens-cpp.git" ], "homepages": [ "https://github.com/scitokens/scitokens-cpp" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "gartung", "greenc-FNAL", "marcmengel", "vitodb" ], "name": "scitokens-cpp", "patches": [], "summary": "A C++ implementation of the SciTokens library with a C library\ninterface. 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The toolkit is currently used by NIST,\nbenchmark test participants, and reserchers worldwide to as a common\nscoring engine.\n", "version": [ { "downloads": [ "https://www.openslr.org/resources/4/sctk-2.4.0-20091110-0958.tar.bz2" ], "version": "2.4.0" }, { "downloads": [ "https://www.openslr.org/resources/4/sctk-2.4.10-20151007-1312Z.tar.bz2" ], "version": "2.4.10" }, { "downloads": [ "https://www.openslr.org/resources/4/sctk-2.4.8-20130429-2145.tar.bz2" ], "version": "2.4.8" }, { "downloads": [ "https://www.openslr.org/resources/4/sctk-2.4.9-20141015-1634Z.tar.bz2" ], "version": "2.4.9" } ] }, "sdl2": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "libxext", "ninja" ], "downloads": [ "https://libsdl.org/release/SDL2-2.30.3.tar.gz", "https://libsdl.org/release/SDL2-2.26.5.tar.gz", "https://libsdl.org/release/SDL2-2.24.1.tar.gz", "https://libsdl.org/release/SDL2-2.0.22.tar.gz", "https://libsdl.org/release/SDL2-2.0.14.tar.gz", "https://libsdl.org/release/SDL2-2.0.5.tar.gz", "https://github.com/libsdl-org/SDL.git" ], "homepages": [ "https://wiki.libsdl.org/FrontPage" ], "licenses": [ "Zlib" ], "maintainers": [], "name": "sdl2", "patches": [], "summary": "Simple DirectMedia Layer is a cross-platform development library\ndesigned to provide low level access to audio, keyboard, mouse,\njoystick, and graphics hardware via OpenGL and Direct3D.\n", "version": [ { "downloads": [ "https://libsdl.org/release/SDL2-2.0.14.tar.gz" ], "version": "2.0.14" }, { "downloads": [ "https://libsdl.org/release/SDL2-2.0.22.tar.gz" ], "version": "2.0.22" }, { "downloads": [ "https://libsdl.org/release/SDL2-2.0.5.tar.gz" ], "version": "2.0.5" }, { "downloads": [ "https://libsdl.org/release/SDL2-2.24.1.tar.gz" ], "version": "2.24.1" }, { "downloads": [ "https://libsdl.org/release/SDL2-2.26.5.tar.gz" ], "version": "2.26.5" }, { "downloads": [ "https://libsdl.org/release/SDL2-2.30.3.tar.gz" ], "version": "2.30.3" } ] }, "sdl2-image": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "sdl2" ], "downloads": [ "https://www.libsdl.org/projects/SDL_image/release/SDL2_image-2.8.2.tar.gz", "https://www.libsdl.org/projects/SDL_image/release/SDL2_image-2.6.3.tar.gz", "https://www.libsdl.org/projects/SDL_image/release/SDL2_image-2.0.1.tar.gz" ], "homepages": [ "http://sdl.beuc.net/sdl.wiki/SDL_image" ], "licenses": [ "Zlib" ], "maintainers": [], "name": "sdl2-image", "patches": [], "summary": "SDL is designed to provide the bare bones of creating a graphical\nprogram.\n", "version": [ { "downloads": [ "https://www.libsdl.org/projects/SDL_image/release/SDL2_image-2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://www.libsdl.org/projects/SDL_image/release/SDL2_image-2.6.3.tar.gz" ], "version": "2.6.3" }, { "downloads": [ "https://www.libsdl.org/projects/SDL_image/release/SDL2_image-2.8.2.tar.gz" ], "version": "2.8.2" } ] }, "sdl2-ttf": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja", "sdl2" ], "downloads": [ "https://www.libsdl.org/projects/SDL_ttf/release/SDL2_ttf-2.20.2.tar.gz", "https://github.com/libsdl-org/SDL_ttf.git" ], "homepages": [ "https://www.libsdl.org/projects/SDL_ttf/" ], "licenses": [ "Zlib" ], "maintainers": [ "amklinv", "georgemalerbo" ], "name": "sdl2-ttf", "patches": [], "summary": "Simple DirectMedia Layer 2 TrueType Fonts library\n", "version": [ { "downloads": [ "https://www.libsdl.org/projects/SDL_ttf/release/SDL2_ttf-2.20.2.tar.gz" ], "version": "2.20.2" } ] }, "sdsl-lite": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "tar" ], "downloads": [], "homepages": [ "https://github.com/simongog/sdsl-lite" ], "licenses": [], "maintainers": [], "name": "sdsl-lite", "patches": [], "summary": "SDSL - 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Exodus is a finite element mesh and results database\nfile format. Default is to build the Exodus and IOSS libraries and the\nio_shell, io_info, io_modify, struc_to_unstruc apps.\n", "version": [ { "downloads": [ "https://github.com/sandialabs/seacas/archive/v2022-01-27.tar.gz" ], "version": "2022-01-27" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/v2022-02-16.tar.gz" ], "version": "2022-02-16" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/v2022-03-04.tar.gz" ], "version": "2022-03-04" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/v2022-05-16.tar.gz" ], "version": "2022-05-16" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/v2022-10-14.tar.gz" ], "version": "2022-10-14" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/v2023-05-30.tar.gz" ], "version": "2023-05-30" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/v2023-11-27.tar.gz" ], "version": "2023-11-27" }, { "downloads": [ 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{ "downloads": [ "https://github.com/sandialabs/seacas/archive/v2025-05-05.tar.gz" ], "version": "2025-05-05" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/v2025-05-22.tar.gz" ], "version": "2025-05-22" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/v2025-06-07.tar.gz" ], "version": "2025-06-07" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/v2025-06-27.tar.gz" ], "version": "2025-06-27" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/v2025-07-07.tar.gz" ], "version": "2025-07-07" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/v2025-08-19.tar.gz" ], "version": "2025-08-19" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/v2025-08-28.tar.gz" ], "version": "2025-08-28" }, { "downloads": [ "https://github.com/sandialabs/seacas/archive/v2025-10-14.tar.gz" ], "version": "2025-10-14" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/sandialabs/seacas.git" } ], "version": "master" } ] }, "seacr": { "alias": [], "categories": [], "dependencies": [ "bedtools2", "r" ], "downloads": [ "https://github.com/FredHutch/SEACR.git" ], "homepages": [ "https://github.com/FredHutch/SEACR" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "seacr", "patches": [], "summary": "SEACR (Sparse Enrichment Analysis for CUT&RUN) is intended to call peaks\nand enriched regions from sparse CUT&RUN or chromatin profiling data in\nwhich the background is dominated by zeros\n", "version": [ { "repositories": [ { "commit": "5a0efe59f06fb17cf9d34d415bb0c1a1f7a77a3c", "type": "git", "url": "https://github.com/FredHutch/SEACR.git" } ], "version": "1.3" }, { "repositories": [ { "commit": "5179a70494eb129fcb1d640177de73f6509654e7", "type": "git", "url": "https://github.com/FredHutch/SEACR.git" } ], "version": "1.4-b2" } ] }, "seal": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/microsoft/SEAL/archive/refs/tags/v4.1.1.tar.gz", "https://github.com/microsoft/SEAL/archive/refs/tags/v3.7.1.tar.gz", "https://github.com/microsoft/SEAL/archive/refs/tags/v3.7.0.tar.gz", "https://github.com/microsoft/SEAL/archive/refs/tags/v3.6.6.tar.gz", "https://github.com/microsoft/SEAL/archive/refs/tags/v3.6.5.tar.gz", "https://github.com/microsoft/SEAL/archive/refs/tags/v3.6.4.tar.gz", "https://github.com/microsoft/SEAL/archive/refs/tags/v3.6.3.tar.gz", "https://github.com/microsoft/SEAL/archive/refs/tags/v3.6.2.tar.gz", "https://github.com/microsoft/SEAL/archive/refs/tags/v3.6.1.tar.gz", "https://github.com/microsoft/SEAL/archive/refs/tags/v3.6.0.tar.gz", "https://github.com/microsoft/SEAL/archive/refs/tags/v3.5.9.tar.gz" ], "homepages": [ "https://github.com/microsoft/SEAL" ], "licenses": [ "MIT" ], "maintainers": [ "wohlbier" ], "name": "seal", "patches": [], "summary": "Microsoft SEAL is an easy-to-use open-source (MIT licensed) homomorphic\nencryption library developed by the Cryptography and Privacy Research\nGroup at Microsoft. Microsoft SEAL is written in modern standard C++ and\nis easy to compile and run in many different environments. For more\ninformation about the Microsoft SEAL project, see sealcrypto.org.\n", "version": [ { "downloads": [ "https://github.com/microsoft/SEAL/archive/refs/tags/v3.5.9.tar.gz" ], "version": "3.5.9" }, { "downloads": [ "https://github.com/microsoft/SEAL/archive/refs/tags/v3.6.0.tar.gz" ], "version": "3.6.0" }, { "downloads": [ "https://github.com/microsoft/SEAL/archive/refs/tags/v3.6.1.tar.gz" ], "version": "3.6.1" }, { "downloads": [ "https://github.com/microsoft/SEAL/archive/refs/tags/v3.6.2.tar.gz" ], "version": "3.6.2" }, { "downloads": [ "https://github.com/microsoft/SEAL/archive/refs/tags/v3.6.3.tar.gz" ], "version": "3.6.3" }, { "downloads": [ "https://github.com/microsoft/SEAL/archive/refs/tags/v3.6.4.tar.gz" ], "version": "3.6.4" }, { "downloads": [ "https://github.com/microsoft/SEAL/archive/refs/tags/v3.6.5.tar.gz" ], "version": "3.6.5" }, { "downloads": [ "https://github.com/microsoft/SEAL/archive/refs/tags/v3.6.6.tar.gz" ], "version": "3.6.6" }, { "downloads": [ 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"alias": [], "categories": [ "lanl" ], "dependencies": [ "cmake", "cuda", "latte", "mpi", "nvhpc", "py-mpi4py", "py-numpy", "py-pip", "py-scikit-build-core", "py-scipy", "py-setuptools", "py-torch", "py-wheel", "python", "python-venv", "qmd-progress" ], "downloads": [ "https://github.com/lanl/sedacs.git" ], "homepages": [ "https://github.com/lanl/sedacs" ], "licenses": [ "BSD 3-Clause" ], "maintainers": [ "cnegre", "finkeljos" ], "name": "sedacs", "patches": [], "summary": "Scalable Ecosystem, Driver, and Analyzer for Complex Chemistry\nSimulations (SEDACS) enables massively parallel atomistic simulations\nthat can seamlessly integrate with a diverse range of available and\nemerging quantum chemistry codes at different levels of theory.\nSupporting ab initio, semiempirical quantum mechanics, and coarse-\ngrained flexible charge equilibration models, this is a unified\nframework to simulate and analyze the quantum molecular dynamics of\ncomplex chemical systems and materials.\n", "version": [ { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/lanl/sedacs.git" } ], "version": "main" } ] }, "seissol": { "alias": [], "categories": [], "dependencies": [ "asagi", "blis", "c", "cmake", "cuda", "cxx", "easi", "eigen", "fortran", "gmake", "hdf5", "hip", "hipsycl", "hsa-rocr-dev", "intel-oneapi-mkl", "kahip", "libxsmm", "llvm-amdgpu", "memkind", "metis", "mpi", "mpich", "mvapich-plus", "netcdf-c", "ninja", "openblas", "openmpi", "parmetis", "py-chainforgecodegen", "py-gemmforge", "py-matplotlib", "py-numpy", "py-pspamm", "py-scipy", "py-setuptools", "python", "scotch", "yaml-cpp" ], "downloads": [ "https://github.com/SeisSol/SeisSol.git" ], "homepages": [ "http://www.seissol.org" ], "licenses": [], "maintainers": [ "Thomas-Ulrich", "davschneller", "vikaskurapati" ], "name": "seissol", "patches": [], "summary": "Seissol - A scientific software for the numerical simulation of seismic\nwave phenomena and earthquake 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Our\nsoftware improves upon BWA, GATK, Mutect, and Mutect2 based pipelines.\nThe Sentieon tools are deployable on any CPU-based computing system. Use\nof this software is subject to the EULA at:\nhttps://www.sentieon.com/EULA/eula-aws.html Please set the path to the\nsentieon license server with: export SENTIEON_LICENSE=:\n", "version": [ { "downloads": [ "https://s3.amazonaws.com/sentieon-release/software/sentieon-genomics-201808.01.tar.gz" ], "version": "201808.01" }, { "downloads": [ "https://s3.amazonaws.com/sentieon-release/software/sentieon-genomics-201808.07.tar.gz" ], "version": "201808.07" }, { "downloads": [ "https://s3.amazonaws.com/sentieon-release/software/sentieon-genomics-202112.02.tar.gz" ], "version": "202112.02" }, { "downloads": [ "https://s3.amazonaws.com/sentieon-release/software/sentieon-genomics-202112.04.tar.gz" ], "version": "202112.04" }, { "downloads": [ "https://s3.amazonaws.com/sentieon-release/software/sentieon-genomics-202112.05.tar.gz" ], "version": "202112.05" }, { "downloads": [ "https://s3.amazonaws.com/sentieon-release/software/sentieon-genomics-202112.06.tar.gz" ], "version": "202112.06" }, { "downloads": [ "https://s3.amazonaws.com/sentieon-release/software/sentieon-genomics-202112.07.tar.gz" ], "version": "202112.07" }, { "downloads": [ "https://s3.amazonaws.com/sentieon-release/software/sentieon-genomics-202308.tar.gz" ], "version": "202308" }, { "downloads": [ "https://s3.amazonaws.com/sentieon-release/software/sentieon-genomics-202308.02.tar.gz" ], "version": "202308.02" }, { "downloads": [ "https://s3.amazonaws.com/sentieon-release/software/sentieon-genomics-202503.tar.gz" ], "version": "202503" }, { "downloads": [ "https://s3.amazonaws.com/sentieon-release/software/sentieon-genomics-202503.01.tar.gz" ], "version": "202503.01" } ] }, "sepp": { "alias": [], "categories": [], "dependencies": [ "blast-plus", "java", "pasta", "py-dendropy", "py-setuptools", "python", "python-venv" ], "downloads": [ "https://github.com/smirarab/sepp/archive/refs/tags/4.5.1.tar.gz" ], "homepages": [ "https://github.com/smirarab/sepp" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [ "snehring" ], "name": "sepp", "patches": [], "summary": "SEPP stands for SATe-enabled phylogenetic placement\n", "version": [ { "downloads": [ "https://github.com/smirarab/sepp/archive/refs/tags/4.5.1.tar.gz" ], "version": "4.5.1" } ] }, "seq-gen": { "alias": [], "categories": [], "dependencies": [ "c", "gmake" ], "downloads": [ "https://github.com/rambaut/Seq-Gen/archive/refs/tags/1.3.4.tar.gz" ], "homepages": [ "http://tree.bio.ed.ac.uk/software/Seq-Gen/" ], "licenses": [], "maintainers": [], "name": "seq-gen", "patches": [], "summary": "Seq-Gen is a program that will simulate the evolution of nucleotide or\namino acid sequences along a phylogeny. Seq-Gen is a program that will\nsimulate the evolution of nucleotide or amino acid sequences along a\nphylogeny, using common models of the substitution process. A range of\nmodels of molecular evolution are implemented including the general\nreversible model. State frequencies and other parameters of the model\nmay be given and site-specific rate heterogeneity may also be\nincorporated in a number of ways. Any number of trees may be read in and\nthe program will produce any number of data sets for each tree. Thus\nlarge sets of replicate simulations can be easily created. It has been\ndesigned to be a general purpose simulator that incorporates most of the\ncommonly used (and computationally tractable) models of molecular\nsequence evolution.\n", "version": [ { "downloads": [ "https://github.com/rambaut/Seq-Gen/archive/refs/tags/1.3.4.tar.gz" ], "version": "1.3.4" } ] }, "seqan": { "alias": [], "categories": [], "dependencies": [ "boost", "bzip2", "cmake", "cxx", "gmake", "ninja", "py-nose", "py-sphinx", "python", "zlib-api" ], "downloads": [ "https://github.com/seqan/seqan/archive/seqan-v2.4.0.tar.gz" ], "homepages": [ "https://www.seqan.de" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "seqan", "patches": [], "summary": "SeqAn is an open source C++ library of efficient algorithms and data\nstructures for the analysis of sequences with the focus on biological\ndata. Our library applies a unique generic design that guarantees high\nperformance, generality, extensibility, and integration with other\nlibraries. SeqAn is easy to use and simplifies the development of new\nsoftware tools with a minimal loss of performance\n", "version": [ { "downloads": [ "https://github.com/seqan/seqan/archive/seqan-v2.4.0.tar.gz" ], "version": "2.4.0" } ] }, "seqfu": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "nim", "zlib" ], "downloads": [ "https://github.com/telatin/seqfu2/archive/refs/tags/v1.22.3.tar.gz", "https://github.com/telatin/seqfu2/archive/refs/tags/v1.20.3.tar.gz" ], "homepages": [ "https://github.com/telatin/seqfu2" ], "licenses": [ "GPL-3.0" ], "maintainers": [ "dialvarezs" ], "name": "seqfu", "patches": [ "wno_incompatible_pointer_types.patch when @:1.21 %gcc@14:" ], "summary": "seqfu - Sequece Fastx Utilities\n", "version": [ { "downloads": [ "https://github.com/telatin/seqfu2/archive/refs/tags/v1.20.3.tar.gz" ], "version": "1.20.3" }, { "downloads": [ "https://github.com/telatin/seqfu2/archive/refs/tags/v1.22.3.tar.gz" ], "version": "1.22.3" } ] }, "seqkit": { 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Whole genome\nresequencing of pools of recombinant mutant genomes allows directly\nlinking phenotypic traits to causal mutations. 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SHRED is a plane-wave DFT code similar to\nABINIT, VASP and Quantum Espresso.\n", "version": [ { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "git@github.com:alwhite-LANL/SHRED.git" } ], "version": "develop" } ] }, "shtools": { "alias": [], "categories": [], "dependencies": [ "blas", "cxx", "fftw", "fortran", "gmake", "lapack", "py-flake8" ], "downloads": [ "https://github.com/SHTOOLS/SHTOOLS/archive/v4.10.2.tar.gz", "https://github.com/SHTOOLS/SHTOOLS/archive/v4.10.1.tar.gz", "https://github.com/SHTOOLS/SHTOOLS/archive/v4.9.1.tar.gz", "https://github.com/SHTOOLS/SHTOOLS/archive/v4.8.tar.gz", "https://github.com/SHTOOLS/SHTOOLS/archive/v4.5.tar.gz" ], "homepages": [ "https://shtools.github.io/SHTOOLS/" ], "licenses": [], "maintainers": [ "eschnett" ], "name": "shtools", "patches": [ "nolibtool.patch when @:4.9" ], "summary": "SHTOOLS - Spherical Harmonic Tools\n", "version": [ { "downloads": [ 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Schmidt and\nis currently maintained as part of the Singular project.\n", "version": [ { "downloads": [ "https://www.singular.uni-kl.de/ftp/pub/Math/Singular/Factory/factory-4.4.1.tar.gz" ], "version": "4.4.1" } ] }, "singularity-eos": { "alias": [], "categories": [], "dependencies": [ "binutils", "c", "catch2", "cmake", "cuda", "cxx", "eigen", "eospac", "fortran", "gmake", "hdf5", "hip", "hsa-rocr-dev", "kokkos", "kokkos-kernels", "llvm-amdgpu", "mpark-variant", "ninja", "ports-of-call", "py-h5py", "py-numpy", "py-pybind11", "python", "spiner" ], "downloads": [ "https://github.com/lanl/singularity-eos/archive/refs/tags/release-main.tar.gz", "https://github.com/lanl/singularity-eos/archive/refs/tags/release-1.10.0.tar.gz", "https://github.com/lanl/singularity-eos/archive/refs/tags/release-1.9.2.tar.gz", "https://github.com/lanl/singularity-eos/archive/refs/tags/release-1.9.1.tar.gz", "https://github.com/lanl/singularity-eos/archive/refs/tags/release-1.9.0.tar.gz", "https://github.com/lanl/singularity-eos/archive/refs/tags/release-1.8.0.tar.gz", "https://github.com/lanl/singularity-eos/archive/refs/tags/release-1.7.0.tar.gz", "https://github.com/lanl/singularity-eos.git" ], "homepages": [ "https://lanl.github.io/singularity-eos/main/index.html" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "rbberger" ], "name": "singularity-eos", "patches": [], "summary": "Singularity-EOS: A collection of closure models and tools useful for\nmultiphysics codes.\n", "version": [ { "downloads": [ "https://github.com/lanl/singularity-eos/archive/refs/tags/release-1.10.0.tar.gz" ], "version": "1.10.0" }, { "downloads": [ "https://github.com/lanl/singularity-eos/archive/refs/tags/release-1.7.0.tar.gz" ], "version": "1.7.0" }, { "downloads": [ "https://github.com/lanl/singularity-eos/archive/refs/tags/release-1.8.0.tar.gz" ], "version": "1.8.0" }, { "downloads": [ "https://github.com/lanl/singularity-eos/archive/refs/tags/release-1.9.0.tar.gz" ], "version": "1.9.0" }, { "downloads": [ "https://github.com/lanl/singularity-eos/archive/refs/tags/release-1.9.1.tar.gz" ], "version": "1.9.1" }, { "downloads": [ "https://github.com/lanl/singularity-eos/archive/refs/tags/release-1.9.2.tar.gz" ], "version": "1.9.2" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/lanl/singularity-eos.git" } ], "version": "main" } ] }, "singularity-hpc": { "alias": [], "categories": [], "dependencies": [ "environment-modules", "lmod", "podman", "py-jinja2", "py-jsonschema", "py-pip", "py-pytest-runner", "py-requests", "py-ruamel-yaml", "py-setuptools", "py-spython", "py-wheel", "python", "python-venv", "singularityce" ], "downloads": [ "https://files.pythonhosted.org/packages/source/s/singularity-hpc/singularity-hpc-0.1.16.tar.gz", "https://files.pythonhosted.org/packages/source/s/singularity-hpc/singularity-hpc-0.1.12.tar.gz" ], "homepages": [ "https://github.com/singularityhub/singularity-hpc" ], "licenses": [ "MPL-2.0" ], "maintainers": [ "marcodelapierre", "vsoch" ], "name": "singularity-hpc", "patches": [], "summary": "Local filesystem registry for containers (intended for HPC) using Lmod\nor Environment Modules. 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products.\n", "version": [ { "downloads": [ "https://github.com/atulkakrana/sPARTA/archive/1.25.tar.gz" ], "version": "1.25" }, { "downloads": [ "https://github.com/atulkakrana/sPARTA/archive/1.27.tar.gz" ], "version": "1.27" } ] }, "spath": { "alias": [], "categories": [ "ecp" ], "dependencies": [ "c", "cmake", "cxx", "gmake", "mpi", "ninja", "zlib-api" ], "downloads": [ "https://github.com/ECP-VeloC/spath/archive/vmain.tar.gz", "https://github.com/ECP-VeloC/spath/archive/v0.4.0.tar.gz", "https://github.com/ECP-VeloC/spath/archive/v0.3.0.tar.gz", "https://github.com/ECP-VeloC/spath/archive/v0.2.0.tar.gz", "https://github.com/ECP-VeloC/spath/archive/v0.1.0.tar.gz", "https://github.com/ECP-VeloC/spath/archive/v0.0.2.tar.gz", "https://github.com/ECP-VeloC/spath/archive/v0.0.1.tar.gz", "https://github.com/ecp-veloc/spath.git" ], "homepages": [ "https://github.com/ecp-veloc/spath" ], "licenses": [ "MIT" ], "maintainers": [ "CamStan", "gonsie" ], "name": "spath", "patches": [], "summary": 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This library is used in the finite-element code\nPyLith (https://github.com/geodynamics/pylith). The primary focus is\nspecification of parameters that vary in space, such as values for\nboundary conditions and parameters of constitutive models. This provides\na specification of these parameters independent of the discretization.\n", "version": [ { "downloads": [ "https://github.com/geodynamics/spatialdata/archive/refs/tags/v3.1.0.tar.gz" ], "version": "3.1.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/geodynamics/spatialdata.git" } ], "version": "develop" } ] }, "spatter": { "alias": [], "categories": [], "dependencies": [ "cmake", "cuda", "gmake", "mpi", "ninja" ], "downloads": [ "https://github.com/hpcgarage/spatter.git" ], "homepages": [ "https://github.com/hpcgarage/spatter" ], "licenses": [ "MIT" ], "maintainers": [ "jyoung3131", "plavin" ], "name": "spatter", "patches": [], "summary": "A microbenchmark for timing Gather/Scatter kernels on CPUs and GPUs.\n", "version": [ { "repositories": [ { "commit": "ec8923711f8dc21eedff7189f12b02eb06845d2f", "type": "git", "url": "https://github.com/hpcgarage/spatter.git" } ], "version": "2.1" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/hpcgarage/spatter.git" } ], "version": "develop" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/hpcgarage/spatter.git" } ], "version": "main" } ] }, "spdk": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "dpdk", "fio", "gmake", "gnuconfig", "libaio", "libtool", "meson", "nasm", "numactl", "pkgconfig", "py-pyelftools", "rdma-core", "uuid" ], "downloads": [ "https://github.com/spdk/spdk/archive/vmaster.tar.gz", "https://github.com/spdk/spdk/archive/v23.01.tar.gz", "https://github.com/spdk/spdk" ], "homepages": [ "https://spdk.io" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "hyoklee" ], "name": "spdk", "patches": [], "summary": "The Storage Performance Development Kit (SPDK) provides a set of tools\nand libraries for writing high performance, scalable, user-mode storage\napplications. It achieves high performance by moving all of the\nnecessary drivers into userspace and operating in a polled mode instead\nof relying on interrupts, which avoids kernel context switches and\neliminates interrupt handling overhead.\n", "version": [ { "repositories": [ { "commit": "10edc60aa8b5f1b04d6496fea976dec75e276a95", "type": "git", "url": "https://github.com/spdk/spdk" } ], "version": "23.01" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/spdk/spdk" } ], "version": "master" } ] }, "spdlog": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "fmt", "gmake", "ninja" ], "downloads": [ "https://github.com/gabime/spdlog/archive/v1.16.0.tar.gz", "https://github.com/gabime/spdlog/archive/v1.15.3.tar.gz", "https://github.com/gabime/spdlog/archive/v1.15.2.tar.gz", "https://github.com/gabime/spdlog/archive/v1.15.1.tar.gz", "https://github.com/gabime/spdlog/archive/v1.15.0.tar.gz", 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"https://github.com/gabime/spdlog/archive/v0.13.0.tar.gz" ], "version": "0.13.0" }, { "downloads": [ "https://github.com/gabime/spdlog/archive/v0.14.0.tar.gz" ], "version": "0.14.0" }, { "downloads": [ "https://github.com/gabime/spdlog/archive/v0.16.0.tar.gz" ], "version": "0.16.0" }, { "downloads": [ "https://github.com/gabime/spdlog/archive/v0.16.1.tar.gz" ], "version": "0.16.1" }, { "downloads": [ "https://github.com/gabime/spdlog/archive/v0.16.2.tar.gz" ], "version": "0.16.2" }, { "downloads": [ "https://github.com/gabime/spdlog/archive/v0.16.3.tar.gz" ], "version": "0.16.3" }, { "downloads": [ "https://github.com/gabime/spdlog/archive/v0.17.0.tar.gz" ], "version": "0.17.0" }, { "downloads": [ "https://github.com/gabime/spdlog/archive/v0.9.0.tar.gz" ], "version": "0.9.0" }, { "downloads": [ "https://github.com/gabime/spdlog/archive/v1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://github.com/gabime/spdlog/archive/v1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://github.com/gabime/spdlog/archive/v1.10.0.tar.gz" ], "version": "1.10.0" }, { "downloads": [ "https://github.com/gabime/spdlog/archive/v1.11.0.tar.gz" ], "version": "1.11.0" }, { "downloads": [ "https://github.com/gabime/spdlog/archive/v1.12.0.tar.gz" ], "version": "1.12.0" }, { "downloads": [ "https://github.com/gabime/spdlog/archive/v1.13.0.tar.gz" ], "version": "1.13.0" }, { "downloads": [ "https://github.com/gabime/spdlog/archive/v1.14.1.tar.gz" ], "version": "1.14.1" }, { "downloads": [ "https://github.com/gabime/spdlog/archive/v1.15.0.tar.gz" ], "version": "1.15.0" }, { "downloads": [ "https://github.com/gabime/spdlog/archive/v1.15.1.tar.gz" ], "version": "1.15.1" }, { "downloads": [ "https://github.com/gabime/spdlog/archive/v1.15.2.tar.gz" ], "version": "1.15.2" }, { "downloads": [ "https://github.com/gabime/spdlog/archive/v1.15.3.tar.gz" ], "version": "1.15.3" }, { "downloads": [ "https://github.com/gabime/spdlog/archive/v1.16.0.tar.gz" ], "version": 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], "homepages": [ "https://github.com/geodynamics/specfem3d_globe" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "specfem3d-globe", "patches": [ "gcc_rm_werror.patch when @:7.0.2 %gcc" ], "summary": "Program specfem3D from SPECFEM3D_GLOBE is a 3-D spectral-element solver\nfor the Earth. It uses a mesh generated by program meshfem3D.\n", "version": [ { "downloads": [ "https://github.com/geodynamics/specfem3d_globe/archive/v7.0.2.tar.gz" ], "version": "7.0.2" }, { "downloads": [ "https://github.com/geodynamics/specfem3d_globe/archive/v8.0.0.tar.gz" ], "version": "8.0.0" } ] }, "spectra": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "eigen", "fortran", "gmake", "ninja" ], "downloads": [ "https://github.com/yixuan/spectra/archive/refs/tags/v1.0.1.tar.gz", "https://github.com/yixuan/spectra/archive/refs/tags/v1.0.0.tar.gz", "https://github.com/yixuan/spectra/archive/refs/tags/v0.9.0.tar.gz" ], "homepages": [ "https://spectralib.org/" ], "licenses": [ "MPL-2.0" ], "maintainers": [ "snehring" ], "name": "spectra", "patches": [], "summary": " Spectra stands for Sparse Eigenvalue Computation Toolkit as a\nRedesigned ARPACK. It is a C++ library for large scale eigenvalue\nproblems, built on top of Eigen, an open source linear algebra library.\nSpectra is implemented as a header-only C++ library, whose only\ndependency, Eigen, is also header-only. Hence Spectra can be easily\nembedded in C++ projects that require calculating eigenvalues of large\nmatrices.\n", "version": [ { "downloads": [ "https://github.com/yixuan/spectra/archive/refs/tags/v0.9.0.tar.gz" ], "version": "0.9.0" }, { "downloads": [ "https://github.com/yixuan/spectra/archive/refs/tags/v1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://github.com/yixuan/spectra/archive/refs/tags/v1.0.1.tar.gz" ], "version": "1.0.1" } ] }, "spectre": { "alias": [], "categories": [], "dependencies": [ "blas", "blaze", "boost", "brigand", "c", "catch2", "charmpp", "cmake", "cxx", "doxygen", "fortran", "gmake", "gsl", "hdf5", "jemalloc", "lapack", "libsharp", "libxsmm", "ninja", "perl", "py-beautifulsoup4", "py-click", "py-h5py", "py-humanize", "py-jinja2", "py-matplotlib", "py-nbconvert", "py-numpy", "py-pandas", "py-pybind11", "py-pybtex", "py-pyyaml", "py-rich", "py-scipy", "python", "python-venv", "yaml-cpp" ], "downloads": [ 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"https://github.com/sxs-collaboration/spectre/archive/v2021.12.15.tar.gz", "https://github.com/sxs-collaboration/spectre.git" ], "homepages": [ "https://spectre-code.com" ], "licenses": [ "MIT" ], "maintainers": [ "nilsvu" ], "name": "spectre", "patches": [ "install-pre-2022.01.03.patch when @:2022.1.3", "https://github.com/sxs-collaboration/spectre/commit/cffeba1bc24bf7c00ec8bac710f02d3db36fa111.patch?full_index=1 when @:2022.1.3", "build-testing-pre-2022.01.03.patch when @:2022.1.3", "https://github.com/sxs-collaboration/spectre/commit/ada1d15d5963bd22581dd8966599e1529a99645d.patch?full_index=1 when @:2022.1.3", "https://github.com/sxs-collaboration/spectre/commit/1b61e62a27b02b658cc6a74c4d46af1f5b5d0a4d.patch?full_index=1 when @:2022.1.3", "https://github.com/sxs-collaboration/spectre/commit/4bb3f25f905f83d8295a28a8036f6971dc4e75a2.patch?full_index=1 when @:2022.1.3", "https://github.com/sxs-collaboration/spectre/commit/a2203824ef38ec79a247703ae8cd215befffe391.patch?full_index=1 when @:2022.1.3 ^charmpp@7.0.0:", "https://github.com/sxs-collaboration/spectre/commit/001fc190a6ec73ad6c19ada9444d04a2320f2b96.patch?full_index=1 when @:2022.1.3 ^boost@1.77:", "https://github.com/sxs-collaboration/spectre/commit/82ff2c39cdae0ecc1e42bdf4564506a4ca869818.patch?full_index=1 when @:2022.1.3 ^python@3.10:", "https://github.com/sxs-collaboration/spectre/commit/eb887635f5e2b394ae2c7e96170e9d907eb315cf.patch?full_index=1 when @:2022.1.3 ^hdf5+mpi", "https://github.com/sxs-collaboration/spectre/commit/b7c54a2a20c6d62aae6b1c97e3468d4cd39ed6ad.patch?full_index=1 when @:2022.1.3+shared", "https://github.com/sxs-collaboration/spectre/commit/b229e939f15362aca892d4480a9182daf88305d4.patch?full_index=1 when @2022.02.08 ^boost@:1.66" ], "summary": "The SpECTRE numerical relativity code. 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SpECTRE is being\ndeveloped in support of our collaborative Simulating eXtreme Spacetimes\n(SXS) research program into the multi-messenger astrophysics of neutron\nstar mergers, core-collapse supernovae, and gamma-ray bursts.\n", "version": [ { "downloads": [ "https://github.com/sxs-collaboration/spectre/archive/v2021.12.15.tar.gz" ], "version": "2021.12.15" }, { "downloads": [ "https://github.com/sxs-collaboration/spectre/archive/v2022.01.03.tar.gz" ], "version": "2022.01.03" }, { "downloads": [ "https://github.com/sxs-collaboration/spectre/archive/v2022.02.08.tar.gz" ], "version": "2022.02.08" }, { "downloads": [ "https://github.com/sxs-collaboration/spectre/archive/v2022.02.17.tar.gz" ], "version": "2022.02.17" }, { "downloads": [ "https://github.com/sxs-collaboration/spectre/archive/v2022.03.07.tar.gz" ], "version": "2022.03.07" }, { "downloads": [ "https://github.com/sxs-collaboration/spectre/archive/v2022.04.04.tar.gz" ], "version": "2022.04.04" }, { "downloads": [ 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}, "sphexa": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cuda", "cxx", "gmake", "h5hut", "hdf5", "hip", "hipcub", "hsa-rocr-dev", "llvm-amdgpu", "mpi", "mpich", "mvapich-plus", "ninja", "openmpi", "rocthrust" ], "downloads": [ "https://github.com/sphexa-org/sphexa/archive/vdevelop.tar.gz", "https://github.com/sphexa-org/sphexa/archive/v0.95.tar.gz", "https://github.com/sphexa-org/sphexa/archive/v0.93.1.tar.gz", "https://github.com/sphexa-org/sphexa.git" ], "homepages": [ "https://github.com/sphexa-org/sphexa" ], "licenses": [ "MIT" ], "maintainers": [ "sekelle" ], "name": "sphexa", "patches": [], "summary": "SPH and N-body simulation framework\n", "version": [ { "downloads": [ "https://github.com/sphexa-org/sphexa/archive/v0.93.1.tar.gz" ], "version": "0.93.1" }, { "downloads": [ "https://github.com/sphexa-org/sphexa/archive/v0.95.tar.gz" ], "version": "0.95" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": 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Without Spindle large MPI jobs can overload on a\nshared file system when loading dynamically linked libraries, causing\nsite-wide performance problems.\n", "version": [ { "downloads": [ "https://github.com/hpc/Spindle/archive/v0.12.tar.gz" ], "version": "0.12" }, { "downloads": [ "https://github.com/hpc/Spindle/archive/v0.8.1.tar.gz" ], "version": "0.8.1" } ] }, "spiner": { "alias": [], "categories": [], "dependencies": [ "c", "catch2", "cmake", "cxx", "gmake", "hdf5", "kokkos", "ninja", "ports-of-call", "py-matplotlib", "py-numpy", "python" ], "downloads": [ "https://github.com/lanl/spiner/archive/refs/tags/main.tar.gz", "https://github.com/lanl/spiner/archive/refs/tags/1.6.4.tar.gz", "https://github.com/lanl/spiner/archive/refs/tags/1.6.3.tar.gz", "https://github.com/lanl/spiner/archive/refs/tags/1.6.2.tar.gz", "https://github.com/lanl/spiner/archive/refs/tags/1.6.1.tar.gz", "https://github.com/lanl/spiner/archive/refs/tags/1.6.0.tar.gz", "https://github.com/lanl/spiner.git" ], "homepages": [ "https://github.com/lanl/spiner" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "rbberger" ], "name": "spiner", "patches": [], "summary": "Spiner: Performance portable routines for generic, tabulated, multi-\ndimensional data\n", "version": [ { "downloads": [ "https://github.com/lanl/spiner/archive/refs/tags/1.6.0.tar.gz" ], "version": "1.6.0" }, { "downloads": [ "https://github.com/lanl/spiner/archive/refs/tags/1.6.1.tar.gz" ], "version": "1.6.1" }, { "downloads": [ "https://github.com/lanl/spiner/archive/refs/tags/1.6.2.tar.gz" ], "version": "1.6.2" }, { "downloads": [ "https://github.com/lanl/spiner/archive/refs/tags/1.6.3.tar.gz" ], "version": "1.6.3" }, { "downloads": [ "https://github.com/lanl/spiner/archive/refs/tags/1.6.4.tar.gz" ], "version": "1.6.4" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/lanl/spiner.git" } ], "version": "main" } ] }, "spiral-package-fftx": { "alias": [], "categories": [], "dependencies": [ "c", "cxx" ], "downloads": [ "https://github.com/spiral-software/spiral-package-fftx/archive/refs/tags/develop.tar.gz", "https://github.com/spiral-software/spiral-package-fftx/archive/refs/tags/main.tar.gz", "https://github.com/spiral-software/spiral-package-fftx/archive/refs/tags/1.3.0.tar.gz", "https://github.com/spiral-software/spiral-package-fftx/archive/refs/tags/1.2.2.tar.gz", "https://github.com/spiral-software/spiral-package-fftx/archive/refs/tags/1.2.1.tar.gz", "https://github.com/spiral-software/spiral-package-fftx/archive/refs/tags/1.1.1.tar.gz", "https://github.com/spiral-software/spiral-package-fftx.git" ], "homepages": [ "https://spiralgen.com" ], "licenses": [ "BSD-2-Clause-FreeBSD" ], "maintainers": [ "spiralgen" ], "name": "spiral-package-fftx", "patches": [], "summary": "This is the SPIRAL package for FFTX: FFTX is the exascale follow-on to\nthe FFTW open source discrete FFT package for executing the Fast Fourier\nTransform as well as higher-level operations composed of linear\noperations combined with DFT transforms.\n", "version": [ { "downloads": [ "https://github.com/spiral-software/spiral-package-fftx/archive/refs/tags/1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://github.com/spiral-software/spiral-package-fftx/archive/refs/tags/1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://github.com/spiral-software/spiral-package-fftx/archive/refs/tags/1.2.2.tar.gz" ], "version": "1.2.2" }, { "downloads": [ "https://github.com/spiral-software/spiral-package-fftx/archive/refs/tags/1.3.0.tar.gz" ], "version": "1.3.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/spiral-software/spiral-package-fftx.git" } ], "version": "develop" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/spiral-software/spiral-package-fftx.git" } ], "version": "main" } ] }, "spiral-package-hcol": { "alias": [], "categories": [], "dependencies": [], "downloads": [ "https://github.com/spiral-software/spiral-package-hcol/archive/refs/tags/master.tar.gz", "https://github.com/spiral-software/spiral-package-hcol/archive/refs/tags/1.0.0.tar.gz", "https://github.com/spiral-software/spiral-package-hcol.git" ], "homepages": [ "https://spiralgen.com" ], "licenses": [ "BSD-2-Clause-FreeBSD" ], "maintainers": [ "spiralgen" ], "name": "spiral-package-hcol", "patches": [], "summary": "This is the SPIRAL package for the Hybrid Control Operator Language\n(HCOL).\n", "version": [ { "downloads": [ "https://github.com/spiral-software/spiral-package-hcol/archive/refs/tags/1.0.0.tar.gz" ], "version": "1.0.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/spiral-software/spiral-package-hcol.git" } ], "version": "master" } ] }, "spiral-package-jit": { "alias": [], "categories": [], "dependencies": [], "downloads": [ 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"https://github.com/spiral-software/spiral-package-mpi/archive/refs/tags/1.1.0.tar.gz", "https://github.com/spiral-software/spiral-package-mpi/archive/refs/tags/1.0.0.tar.gz", "https://github.com/spiral-software/spiral-package-mpi.git" ], "homepages": [ "https://spiralgen.com" ], "licenses": [ "BSD-2-Clause-FreeBSD" ], "maintainers": [ "spiralgen" ], "name": "spiral-package-mpi", "patches": [], "summary": "This is the SPIRAL package for MPI.\n", "version": [ { "downloads": [ "https://github.com/spiral-software/spiral-package-mpi/archive/refs/tags/1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://github.com/spiral-software/spiral-package-mpi/archive/refs/tags/1.1.0.tar.gz" ], "version": "1.1.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/spiral-software/spiral-package-mpi.git" } ], "version": "develop" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": 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"https://github.com/spiral-software/spiral-package-simt/archive/refs/tags/1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://github.com/spiral-software/spiral-package-simt/archive/refs/tags/1.1.0.tar.gz" ], "version": "1.1.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/spiral-software/spiral-package-simt.git" } ], "version": "develop" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/spiral-software/spiral-package-simt.git" } ], "version": "main" } ] }, "spiral-software": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja", "spiral-package-fftx", "spiral-package-hcol", "spiral-package-jit", "spiral-package-mpi", "spiral-package-simt" ], "downloads": [ "https://github.com/spiral-software/spiral-software/archive/refs/tags/develop.tar.gz", "https://github.com/spiral-software/spiral-software/archive/refs/tags/master.tar.gz", "https://github.com/spiral-software/spiral-software/archive/refs/tags/8.5.1.tar.gz", "https://github.com/spiral-software/spiral-software/archive/refs/tags/8.5.0.tar.gz", "https://github.com/spiral-software/spiral-software/archive/refs/tags/8.4.0.tar.gz", "https://github.com/spiral-software/spiral-software/archive/refs/tags/8.3.0.tar.gz", "https://github.com/spiral-software/spiral-software.git" ], "homepages": [ "https://spiralgen.com" ], "licenses": [ "BSD-2-Clause-FreeBSD" ], "maintainers": [ "spiralgen" ], "name": "spiral-software", "patches": [], "summary": "SPIRAL is a program generation system for linear transforms and other\nmathematical functions that produces very high performance code for a\nwide spectrum of hardware platforms.\n", "version": [ { "downloads": [ "https://github.com/spiral-software/spiral-software/archive/refs/tags/8.3.0.tar.gz" ], "version": "8.3.0" }, { "downloads": [ 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"summary": "srcML is an XML format for source code. The XML markup identifies\nelements of the abstract syntax of the source-code language. The toolkit\nincludes parsing supports conversion of C, C++, C#, and Java both to and\nfrom the srcML format. The format allows leveraging XML tools to support\nthe various tasks of source code exploration, analysis, and\nmanipulation.\n", "version": [ { "downloads": [ "https://github.com/srcML/srcML/archive/refs/tags/v1.0.0.tar.gz" ], "version": "1.0.0" } ] }, "srcml-identifier-getter-tool": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "gmake", "libxml2", "ninja", "xz", "zlib-api" ], "downloads": [ "https://github.com/SCANL/srcml_identifier_getter_tool.git" ], "homepages": [ "https://github.com/SCANL/srcml_identifier_getter_tool" ], "licenses": [], "maintainers": [], "name": "srcml-identifier-getter-tool", "patches": [], "summary": "SCANL's srcml_identifier_getter_tool. reads a srcML archive and outputs\nall identifiers in that archive through standard out.\n", "version": [ { "repositories": [ { "commit": "01394c247ae6f61cc5864a9697e72e3623d8e7fb", "type": "git", "url": "https://github.com/SCANL/srcml_identifier_getter_tool.git" } ], "version": "2022-10-17" } ] }, 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Spack will search your current directory for the download\nfile. Alternatively, add this file to a mirror so that Spack can find\nit. For instructions on how to set up a mirror, see\nhttps://spack.readthedocs.io/en/latest/mirrors.html\n", "version": [ { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/40SSPACE-LongRead_v1-1.tar.gz" ], "version": "1.1" } ] }, "sspace-standard": { "alias": [], "categories": [], "dependencies": [ "perl", "perl-perl4-corelibs" ], "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/41SSPACE-STANDARD-3.0_linux-x86_64.tar.gz" ], "homepages": [ "https://www.baseclear.com/genomics/bioinformatics/basetools/SSPACE" ], "licenses": [], "maintainers": [], "name": "sspace-standard", "patches": [], "summary": "SSPACE standard is a stand-alone program for scaffolding pre-assembled\ncontigs using NGS paired-read data Note: A manual download is required\nfor SSPACE-Standard. Spack will search your current directory for the\ndownload file. Alternatively, add this file to a mirror so that Spack\ncan find it. For instructions on how to set up a mirror, see\nhttps://spack.readthedocs.io/en/latest/mirrors.html\n", "version": [ { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/41SSPACE-STANDARD-3.0_linux-x86_64.tar.gz" ], "version": "3.0" } ] }, "sst-core": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "cxx", "gettext", "gmake", "gnuconfig", "hdf5", "libtool", "m4", "mpi", "ncurses", "python", "zlib-api", "zoltan" ], "downloads": [ "https://github.com/sstsimulator/sst-core/releases/download/vdevelop_Final/sstcore-develop.tar.gz", "https://github.com/sstsimulator/sst-core/releases/download/vmaster_Final/sstcore-master.tar.gz", "https://github.com/sstsimulator/sst-core/releases/download/v15.0.0_Final/sstcore-15.0.0.tar.gz", "https://github.com/sstsimulator/sst-core/releases/download/v14.1.0_Final/sstcore-14.1.0.tar.gz", "https://github.com/sstsimulator/sst-core/releases/download/v14.0.0_Final/sstcore-14.0.0.tar.gz", 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Traces are created by linking an application with a\nlibrary that uses the PMPI interface to intercept MPI calls. 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"type": "git", "url": "https://github.com/stingergraph/stinger.git" } ], "version": "master" } ] }, "storm": { "alias": [], "categories": [], "dependencies": [ "java", "zookeeper" ], "downloads": [ "https://archive.apache.org/dist/storm/apache-storm-2.6.2/apache-storm-2.6.2.tar.gz", "https://archive.apache.org/dist/storm/apache-storm-2.3.0/apache-storm-2.3.0.tar.gz", "https://archive.apache.org/dist/storm/apache-storm-2.2.0/apache-storm-2.2.0.tar.gz", "https://archive.apache.org/dist/storm/apache-storm-2.1.0/apache-storm-2.1.0.tar.gz", "https://archive.apache.org/dist/storm/apache-storm-2.0.0/apache-storm-2.0.0.tar.gz", "https://archive.apache.org/dist/storm/apache-storm-1.2.3/apache-storm-1.2.3.tar.gz" ], "homepages": [ "https://storm.apache.org/" ], "licenses": [ "CC-BY-4.0" ], "maintainers": [], "name": "storm", "patches": [], "summary": " Storm is a distributed realtime computation system. Similar to how\nHadoop provides a set of general primitives for doing batch processing,\nStorm provides a set of general primitives for doing realtime\ncomputation.\n", "version": [ { "downloads": [ "https://archive.apache.org/dist/storm/apache-storm-1.2.3/apache-storm-1.2.3.tar.gz" ], "version": "1.2.3" }, { "downloads": [ "https://archive.apache.org/dist/storm/apache-storm-2.0.0/apache-storm-2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://archive.apache.org/dist/storm/apache-storm-2.1.0/apache-storm-2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://archive.apache.org/dist/storm/apache-storm-2.2.0/apache-storm-2.2.0.tar.gz" ], "version": "2.2.0" }, { "downloads": [ "https://archive.apache.org/dist/storm/apache-storm-2.3.0/apache-storm-2.3.0.tar.gz" ], "version": "2.3.0" }, { "downloads": [ "https://archive.apache.org/dist/storm/apache-storm-2.6.2/apache-storm-2.6.2.tar.gz" ], "version": "2.6.2" } ] }, "stow": { "alias": [], "categories": [], "dependencies": [ "gmake", "gnuconfig", "perl" ], "downloads": [ "https://ftpmirror.gnu.org/stow/stow-2.4.1.tar.bz2", "https://ftpmirror.gnu.org/stow/stow-2.4.0.tar.bz2", "https://ftpmirror.gnu.org/stow/stow-2.3.1.tar.bz2", "https://ftpmirror.gnu.org/stow/stow-2.2.2.tar.bz2", "https://ftpmirror.gnu.org/stow/stow-2.2.0.tar.bz2", "https://ftpmirror.gnu.org/stow/stow-2.1.3.tar.bz2", "https://ftpmirror.gnu.org/stow/stow-2.1.2.tar.bz2", "https://ftpmirror.gnu.org/stow/stow-2.1.1.tar.bz2", "https://ftpmirror.gnu.org/stow/stow-2.1.0.tar.bz2" ], "homepages": [ "https://www.gnu.org/software/stow/" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [], "name": "stow", "patches": [], "summary": "GNU Stow: a symlink farm manager GNU Stow is a symlink farm manager\nwhich takes distinct packages of software and/or data located in\nseparate directories on the filesystem, and makes them appear to be\ninstalled in the same place.\n", "version": [ { "downloads": [ "https://ftpmirror.gnu.org/stow/stow-2.1.0.tar.bz2" ], "version": "2.1.0" }, { "downloads": [ "https://ftpmirror.gnu.org/stow/stow-2.1.1.tar.bz2" ], "version": "2.1.1" }, { "downloads": [ "https://ftpmirror.gnu.org/stow/stow-2.1.2.tar.bz2" ], "version": "2.1.2" }, { "downloads": [ "https://ftpmirror.gnu.org/stow/stow-2.1.3.tar.bz2" ], "version": "2.1.3" }, { "downloads": [ "https://ftpmirror.gnu.org/stow/stow-2.2.0.tar.bz2" ], "version": "2.2.0" }, { "downloads": [ "https://ftpmirror.gnu.org/stow/stow-2.2.2.tar.bz2" ], "version": "2.2.2" }, { "downloads": [ "https://ftpmirror.gnu.org/stow/stow-2.3.1.tar.bz2" ], "version": "2.3.1" }, { "downloads": [ "https://ftpmirror.gnu.org/stow/stow-2.4.0.tar.bz2" ], "version": "2.4.0" }, { "downloads": [ "https://ftpmirror.gnu.org/stow/stow-2.4.1.tar.bz2" ], "version": "2.4.1" } ] }, "strace": { "alias": [], "categories": [], "dependencies": [ "c", "gawk", "gmake", "gnuconfig" ], "downloads": [ "https://github.com/strace/strace/releases/download/v6.15/strace-6.15.tar.xz", "https://github.com/strace/strace/releases/download/v6.11/strace-6.11.tar.xz", "https://github.com/strace/strace/releases/download/v5.19/strace-5.19.tar.xz", "https://github.com/strace/strace/releases/download/v5.17/strace-5.17.tar.xz", "https://github.com/strace/strace/releases/download/v5.12/strace-5.12.tar.xz", "https://github.com/strace/strace/releases/download/v5.11/strace-5.11.tar.xz", "https://github.com/strace/strace/releases/download/v5.10/strace-5.10.tar.xz", "https://github.com/strace/strace/releases/download/v5.9/strace-5.9.tar.xz", "https://github.com/strace/strace/releases/download/v5.8/strace-5.8.tar.xz", "https://github.com/strace/strace/releases/download/v5.7/strace-5.7.tar.xz", "https://github.com/strace/strace/releases/download/v5.6/strace-5.6.tar.xz", "https://github.com/strace/strace/releases/download/v5.5/strace-5.5.tar.xz", "https://github.com/strace/strace/releases/download/v5.4/strace-5.4.tar.xz", "https://github.com/strace/strace/releases/download/v5.3/strace-5.3.tar.xz", "https://github.com/strace/strace/releases/download/v5.2/strace-5.2.tar.xz", "https://github.com/strace/strace/releases/download/v5.1/strace-5.1.tar.xz", "https://github.com/strace/strace/releases/download/v5.0/strace-5.0.tar.xz", "https://github.com/strace/strace/releases/download/v4.21/strace-4.21.tar.xz" ], "homepages": [ "https://strace.io" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "michaelkuhn" ], "name": "strace", "patches": [], "summary": "Strace is a diagnostic, debugging and instructional userspace utility\nfor Linux. It is used to monitor and tamper with interactions between\nprocesses and the Linux kernel, which include system calls, signal\ndeliveries, and changes of process state.\n", "version": [ { "downloads": [ "https://github.com/strace/strace/releases/download/v4.21/strace-4.21.tar.xz" ], "version": "4.21" }, { "downloads": [ "https://github.com/strace/strace/releases/download/v5.0/strace-5.0.tar.xz" ], "version": "5.0" }, { "downloads": [ "https://github.com/strace/strace/releases/download/v5.1/strace-5.1.tar.xz" ], "version": "5.1" }, { "downloads": [ "https://github.com/strace/strace/releases/download/v5.10/strace-5.10.tar.xz" ], "version": "5.10" }, { "downloads": [ "https://github.com/strace/strace/releases/download/v5.11/strace-5.11.tar.xz" ], "version": "5.11" }, { "downloads": [ "https://github.com/strace/strace/releases/download/v5.12/strace-5.12.tar.xz" ], "version": "5.12" }, { "downloads": [ "https://github.com/strace/strace/releases/download/v5.17/strace-5.17.tar.xz" ], "version": "5.17" }, { "downloads": [ "https://github.com/strace/strace/releases/download/v5.19/strace-5.19.tar.xz" ], "version": "5.19" }, { "downloads": [ "https://github.com/strace/strace/releases/download/v5.2/strace-5.2.tar.xz" ], "version": "5.2" }, { "downloads": [ "https://github.com/strace/strace/releases/download/v5.3/strace-5.3.tar.xz" ], "version": "5.3" }, { "downloads": [ "https://github.com/strace/strace/releases/download/v5.4/strace-5.4.tar.xz" ], "version": "5.4" }, { "downloads": [ "https://github.com/strace/strace/releases/download/v5.5/strace-5.5.tar.xz" ], "version": "5.5" }, { "downloads": [ "https://github.com/strace/strace/releases/download/v5.6/strace-5.6.tar.xz" ], "version": "5.6" }, { "downloads": [ "https://github.com/strace/strace/releases/download/v5.7/strace-5.7.tar.xz" ], "version": "5.7" }, { "downloads": [ "https://github.com/strace/strace/releases/download/v5.8/strace-5.8.tar.xz" ], "version": "5.8" }, { "downloads": [ "https://github.com/strace/strace/releases/download/v5.9/strace-5.9.tar.xz" ], "version": "5.9" }, { "downloads": [ "https://github.com/strace/strace/releases/download/v6.11/strace-6.11.tar.xz" ], "version": "6.11" }, { "downloads": [ "https://github.com/strace/strace/releases/download/v6.15/strace-6.15.tar.xz" ], "version": "6.15" } ] }, "stream": { "alias": [], "categories": [], "dependencies": [ "c", "fortran", "gmake" ], "downloads": [ "https://github.com/jeffhammond/STREAM.git" ], "homepages": [ "https://www.cs.virginia.edu/stream/ref.html" ], "licenses": [], "maintainers": [], "name": "stream", "patches": [], "summary": "The STREAM benchmark is a simple synthetic benchmark program that\nmeasures sustainable memory bandwidth (in MB/s) and the corresponding\ncomputation rate for simple vector kernels.\n", "version": [ { "downloads": [ [] ], "version": "5.10" } ] }, "stress": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://github.com/javiroman/system-stress/archive/v1.0.4.tar.gz" ], "homepages": [ "https://github.com/javiroman/system-stress" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "stress", "patches": [], "summary": "stress is a deliberately simple workload generator for POSIX systems. It\nimposes a configurable amount of CPU, memory, I/O, and disk stress on\nthe system. It is written in C, and is free software licensed under the\nGPLv2.\n", "version": [ { "downloads": [ "https://github.com/javiroman/system-stress/archive/v1.0.4.tar.gz" ], "version": "1.0.4" } ] }, "stress-ng": { "alias": [], "categories": [], "dependencies": [ "gmake", "judy", "keyutils", "libaio", "libatomic-ops", "libbsd", "libcap", "libgcrypt", "zlib-api" ], "downloads": [ "https://github.com/ColinIanKing/stress-ng/archive/refs/tags/V0.12.06.tar.gz" ], "homepages": [ "https://github.com/ColinIanKing/stress-ng" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "stress-ng", "patches": [], "summary": "stress-ng will stress test a computer system in various selectable ways.\nIt was designed to exercise various physical subsystems of a computer as\nwell as the various operating system kernel interfaces.\n", "version": [ { "downloads": [ "https://github.com/ColinIanKing/stress-ng/archive/refs/tags/V0.12.06.tar.gz" ], "version": "0.12.06" } ] }, "stressapptest": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gnuconfig" ], "downloads": [ "https://github.com/stressapptest/stressapptest/archive/refs/tags/v1.0.9.tar.gz", "https://github.com/stressapptest/stressapptest/archive/refs/tags/v1.0.8.tar.gz" ], "homepages": [ "https://github.com/stressapptest/stressapptest" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "saqibkh" ], "name": "stressapptest", "patches": [], "summary": " Stressful Application Test (or stressapptest, its unix name) is a\nmemory interface test. It tries to maximize randomized traffic to memory\nfrom processor and I/O, with the intent of creating a realistic high\nload situation in order to test the existing hardware devices in a\ncomputer. It has been used at Google for some time and now it is\navailable under the apache 2.0 license.\n", "version": [ { "downloads": [ "https://github.com/stressapptest/stressapptest/archive/refs/tags/v1.0.8.tar.gz" ], "version": "1.0.8" }, { "downloads": [ "https://github.com/stressapptest/stressapptest/archive/refs/tags/v1.0.9.tar.gz" ], "version": "1.0.9" } ] }, "string-view-lite": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/martinmoene/string-view-lite/archive/v1.7.0.tar.gz", "https://github.com/martinmoene/string-view-lite/archive/v1.2.0.tar.gz", "https://github.com/martinmoene/string-view-lite/archive/v1.1.0.tar.gz", "https://github.com/martinmoene/string-view-lite/archive/v1.0.0.tar.gz", "https://github.com/martinmoene/string-view-lite/archive/v0.2.0.tar.gz", "https://github.com/martinmoene/string-view-lite/archive/v0.1.0.tar.gz" ], "homepages": [ "https://github.com/martinmoene/string-view-lite" ], "licenses": [ "BSL-1.0" ], "maintainers": [], "name": "string-view-lite", "patches": [], "summary": " A single-file header-only version of a C++17-like string_view for\nC++98, C++11 and later\n", "version": [ { "downloads": [ "https://github.com/martinmoene/string-view-lite/archive/v0.1.0.tar.gz" ], "version": "0.1.0" }, { "downloads": [ "https://github.com/martinmoene/string-view-lite/archive/v0.2.0.tar.gz" ], "version": "0.2.0" }, { "downloads": [ "https://github.com/martinmoene/string-view-lite/archive/v1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://github.com/martinmoene/string-view-lite/archive/v1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://github.com/martinmoene/string-view-lite/archive/v1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://github.com/martinmoene/string-view-lite/archive/v1.7.0.tar.gz" ], "version": "1.7.0" } ] }, "stringtie": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "zlib-api" ], "downloads": [ "https://github.com/gpertea/stringtie/archive/v3.0.0.tar.gz", "https://github.com/gpertea/stringtie/archive/v2.2.1.tar.gz", "https://github.com/gpertea/stringtie/archive/v1.3.4d.tar.gz", "https://github.com/gpertea/stringtie/archive/v1.3.4a.tar.gz", "https://github.com/gpertea/stringtie/archive/v1.3.3b.tar.gz" ], "homepages": [ "https://ccb.jhu.edu/software/stringtie" ], "licenses": [ "MIT" ], "maintainers": [], "name": "stringtie", "patches": [], "summary": "StringTie is a fast and highly efficient assembler of RNA-Seq alignments\ninto potential transcripts.\n", "version": [ { "downloads": [ "https://github.com/gpertea/stringtie/archive/v1.3.3b.tar.gz" ], "version": "1.3.3b" }, { "downloads": [ "https://github.com/gpertea/stringtie/archive/v1.3.4a.tar.gz" ], "version": "1.3.4a" }, { "downloads": [ "https://github.com/gpertea/stringtie/archive/v1.3.4d.tar.gz" ], "version": "1.3.4d" }, { "downloads": [ "https://github.com/gpertea/stringtie/archive/v2.2.1.tar.gz" ], "version": "2.2.1" }, { "downloads": [ "https://github.com/gpertea/stringtie/archive/v3.0.0.tar.gz" ], "version": "3.0.0" } ] }, "stripack": { "alias": [], "categories": [], "dependencies": [ "fortran", "gmake" ], "downloads": [ "https://people.sc.fsu.edu/~jburkardt/f_src/stripack/stripack.f90" ], "homepages": [ "https://people.sc.fsu.edu/~jburkardt/f_src/stripack/stripack.html" ], "licenses": [ "MIT" ], "maintainers": [ "cessenat" ], "name": "stripack", "patches": [], "summary": "STRIPACK: Delaunay Triangulation rewritten in Fortran 90 by John\nBurkardt at\nhttps://people.sc.fsu.edu/~jburkardt/f_src/stripack/stripack.html The\noriginal Fortran 77 package STRIPACK is available from netlib as\nalgorithm number 772 at https://www.netlib.org/toms/772.gz Dr. Renka's\narticles were published in the ACM Transactions on Mathematical\nSoftware, Vol. 23, No 3, September 1997\nhttps://dl.acm.org/doi/10.1145/275323.275329\n", "version": [ { "branch": "develop", "version": "develop" } ] }, "structure": { "alias": [], "categories": [], "dependencies": [ "c", "gmake" ], "downloads": [ "http://web.stanford.edu/group/pritchardlab/structure_software/release_versions/v2.3.4/structure_kernel_source.tar.gz" ], "homepages": [ "https://web.stanford.edu/group/pritchardlab/structure.html" ], "licenses": [], "maintainers": [], "name": "structure", "patches": [], "summary": "Structure is a free software package for using multi-locus genotype data\nto investigate population structure.\n", "version": [ { "downloads": [ "http://web.stanford.edu/group/pritchardlab/structure_software/release_versions/v2.3.4/structure_kernel_source.tar.gz" ], "version": "2.3.4" } ] }, "strumpack": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "blas", "butterflypack", "c", "cmake", "cuda", "cxx", "fortran", "gmake", "hip", "hipblas", "hipsparse", "hsa-rocr-dev", "lapack", "llvm-amdgpu", "magma", "metis", "mpi", "ninja", "openblas", "parmetis", "rocsolver", "rocthrust", "scalapack", "scotch", "slate", "zfp" ], "downloads": [ "https://github.com/pghysels/STRUMPACK/archive/refs/tags/vmaster.tar.gz", "https://github.com/pghysels/STRUMPACK/archive/refs/tags/v8.0.0.tar.gz", "https://github.com/pghysels/STRUMPACK/archive/refs/tags/v7.2.0.tar.gz", "https://github.com/pghysels/STRUMPACK/archive/refs/tags/v7.1.3.tar.gz", "https://github.com/pghysels/STRUMPACK/archive/refs/tags/v7.1.2.tar.gz", "https://github.com/pghysels/STRUMPACK/archive/refs/tags/v7.1.1.tar.gz", "https://github.com/pghysels/STRUMPACK/archive/refs/tags/v7.1.0.tar.gz", "https://github.com/pghysels/STRUMPACK/archive/refs/tags/v7.0.1.tar.gz", "https://github.com/pghysels/STRUMPACK/archive/refs/tags/v7.0.0.tar.gz", "https://github.com/pghysels/STRUMPACK/archive/refs/tags/v6.3.1.tar.gz", "https://github.com/pghysels/STRUMPACK/archive/refs/tags/v6.3.0.tar.gz", "https://github.com/pghysels/STRUMPACK/archive/refs/tags/v6.2.1.tar.gz", "https://github.com/pghysels/STRUMPACK/archive/refs/tags/v6.2.0.tar.gz", "https://github.com/pghysels/STRUMPACK/archive/refs/tags/v6.1.0.tar.gz", "https://github.com/pghysels/STRUMPACK/archive/refs/tags/v6.0.0.tar.gz", "https://github.com/pghysels/STRUMPACK/archive/refs/tags/v5.1.1.tar.gz", "https://github.com/pghysels/STRUMPACK/archive/refs/tags/v5.0.0.tar.gz", "https://github.com/pghysels/STRUMPACK/archive/refs/tags/v4.0.0.tar.gz", "https://github.com/pghysels/STRUMPACK/archive/refs/tags/v3.3.0.tar.gz", "https://github.com/pghysels/STRUMPACK/archive/refs/tags/v3.2.0.tar.gz", "https://github.com/pghysels/STRUMPACK/archive/refs/tags/v3.1.1.tar.gz", "https://github.com/pghysels/STRUMPACK.git" ], "homepages": [ "http://portal.nersc.gov/project/sparse/strumpack" ], "licenses": [ "BSD-3-Clause-LBNL" ], "maintainers": [ "pghysels" ], "name": "strumpack", "patches": [ "intel-19-compile.patch when @3.1.1", "shared-rocm.patch when @5.1.1", "strumpack-7.0.1-mpich-hipcc.patch when @7.0.1+rocm ^mpich" ], "summary": "STRUMPACK -- STRUctured Matrix PACKage - provides linear solvers for\nsparse matrices and for dense rank-structured matrices, i.e., matrices\nthat exhibit some kind of low-rank property. It provides a distributed\nmemory fully algebraic sparse solver and preconditioner. The\npreconditioner is mostly aimed at large sparse linear systems which\nresult from the discretization of a partial differential equation, but\nis not limited to any particular type of problem. 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Note: A manual download is required for TargetP. Spack will\nsearch your current directory for the download file. Alternatively, add\nthis file to a mirror so that Spack can find it. 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Use of this software\nis subject to the license at https://www2.fkf.mpg.de/andersen/LMTODOC/no\nde180.html#SECTION000130000000000000000\n", "version": [ { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/lmto47.1d.tar.gz" ], "version": "20240601-47.1d" }, { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/lmto47c2.1d.tar.gz" ], "version": "20240601-47c2.1d" }, { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/lmto47u.1d.tar.gz" ], "version": "20240601-47u.1d" } ] }, "tbb": { "alias": [ { "alias_for": "intel-tbb", "name": "tbb" } ], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "hwloc", "ninja" ], "downloads": [ "https://github.com/oneapi-src/oneTBB/archive/v2020.1.tar.gz", "https://github.com/oneapi-src/oneTBB.git" ], "homepages": [ "https://www.threadingbuildingblocks.org/" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "rscohn2" ], "name": "intel-tbb", "patches": [ "gcc_generic-pedantic-2019.patch when @2019.1:2019.5", "gcc_generic-pedantic-4.4.patch when @:2019.0", "gcc_13-2021-v2.patch when @2021.1:2021.9", "tbb_cmakeConfig-2019.5.patch when @2019.5:2021.0", "tbb_cmakeConfig.patch when @2017.7:2019.4", "makefile-debug.patch when @2020:2021.0", "disable-tm.patch when ~tm", "macos-arm64.patch when @:2021.0", "intel-tbb.2020.3-icx.patch when @2020.3 %oneapi", "intel-tbb.nvhpc-remove-flags.2017.patch when @2017:2018.9 %nvhpc", "intel-tbb.nvhpc-remove-flags.2019.patch when @2019:2019.0 %nvhpc", "intel-tbb.nvhpc-remove-flags.2019.1.patch when @2019.1:2019.6 %nvhpc", "intel-tbb.nvhpc-remove-flags.2019.7.patch when @2019.7:2019.8 %nvhpc", "intel-tbb.nvhpc-remove-flags.2019.9.patch when @2019.9: %nvhpc", "intel-tbb.nvhpc-version-script-fix.2017.patch when @2017 %nvhpc" ], "summary": "Widely used C++ template library for task parallelism. 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It can be used to read and set the\nsystem clock, the real-time clock (RTC), the system timezone, get a list\nof valid timezones, and enable or disable an NTP client installed on the\nsystem. It is a replacement for the systemd-timedated service.\n", "version": [ { "downloads": [ "https://github.com/mlichvar/timedatex/archive/v0.4.tar.gz" ], "version": "0.4" }, { "downloads": [ "https://github.com/mlichvar/timedatex/archive/v0.5.tar.gz" ], "version": "0.5" }, { "downloads": [ "https://github.com/mlichvar/timedatex/archive/v0.6.tar.gz" ], "version": "0.6" } ] }, "timemory": { "alias": [], "categories": [], "dependencies": [ "arm-forge", "c", "caliper", "cmake", "cuda", "cxx", "dyninst", "fortran", "gmake", "gotcha", "gperftools", "intel-oneapi-vtune", "likwid", "mpi", "nccl", "ninja", "papi", "pil", "py-cython", "py-hatchet", "py-matplotlib", "py-mpi4py", "py-multiprocess", "py-numpy", "py-pandas", "py-pydot", "py-pyyaml", "python", "python-venv", "tau", "upcxx" ], "downloads": [ "https://github.com/NERSC/timemory.git" ], "homepages": [ "https://timemory.readthedocs.io/en/latest/" ], "licenses": [ "MIT" ], "maintainers": [ "jrmadsen" ], "name": "timemory", "patches": [], 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"cxx", "gmake", "mpi", "ninja" ], "downloads": [ "https://github.com/jsitaraman/tioga.git" ], "homepages": [ "https://github.com/jsitaraman/tioga" ], "licenses": [ "LGPL-3.0-only" ], "maintainers": [ "jrood-nrel" ], "name": "tioga", "patches": [], "summary": "Topology Independent Overset Grid Assembly (TIOGA)\n", "version": [ { "repositories": [ { "commit": "d1f0ceb5db5cffecc3197a904fbf4d539d87e6a1", "type": "git", "url": "https://github.com/jsitaraman/tioga.git" } ], "version": "1.0.0" }, { "repositories": [ { "commit": "03f7515f10d9523c0b59dd270f310a3b7eb6ddef", "type": "git", "url": "https://github.com/jsitaraman/tioga.git" } ], "version": "1.1.0" }, { "repositories": [ { "commit": "cbff5456ca339bae9ebe8e3e1aac5108695e8359", "type": "git", "url": "https://github.com/jsitaraman/tioga.git" } ], "version": "1.2.0" }, { "repositories": [ { "commit": "b1c018a1f8c266e5984a57cc69462625e92d6678", "type": "git", "url": "https://github.com/jsitaraman/tioga.git" } ], "version": "1.3.0" }, { 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Note: A manual download is required for TRF. Spack\nwill search your current directory for the download file. Alternatively,\nadd this file to a mirror so that Spack can find it. For instructions on\nhow to set up a mirror, see\nhttps://spack.readthedocs.io/en/latest/mirrors.html\n", "version": [ { "downloads": [ "https://github.com/Benson-Genomics-Lab/TRF/archive/refs/tags/v4.09.tar.gz" ], "version": "4.09" }, { "downloads": [ "https://github.com/Benson-Genomics-Lab/TRF/archive/refs/tags/v4.09.1.tar.gz" ], "version": "4.09.1" } ] }, "triangle": { "alias": [], "categories": [], "dependencies": [ "gmake", "libx11" ], "downloads": [ "https://www.netlib.org/voronoi/triangle.zip" ], "homepages": [ "https://www.cs.cmu.edu/~quake/triangle.html" ], "licenses": [ "Unlicense" ], "maintainers": [ "justinh2002" ], "name": "triangle", "patches": [], "summary": "Triangle is a two-dimensional mesh generator and Delaunay triangulator.\nTriangle generates exact Delaunay triangulations, constrained Delaunay\ntriangulations, conforming Delaunay triangulations, Voronoi diagrams,\nand high-quality triangular meshes.\n", "version": [ { "downloads": [ "https://www.netlib.org/voronoi/triangle.zip" ], "version": "1.6" } ] }, "trident": { "alias": [], "categories": [], "dependencies": [ "go" ], "downloads": [ "https://github.com/NetApp/trident/archive/v24.02.0.tar.gz", "https://github.com/NetApp/trident/archive/v23.01.1.tar.gz", "https://github.com/NetApp/trident/archive/v20.01.1.tar.gz", "https://github.com/NetApp/trident/archive/v20.01.0.tar.gz" ], "homepages": [ "https://netapp-trident.readthedocs.io" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "trident", "patches": [], "summary": "Trident is a fully supported open source project maintained by NetApp.\nIt has been designed from the ground up to help you meet the\nsophisticated persistence demands of your containerized applications.\n", "version": [ { "downloads": [ "https://github.com/NetApp/trident/archive/v20.01.0.tar.gz" ], "version": "20.01.0" }, { "downloads": [ "https://github.com/NetApp/trident/archive/v20.01.1.tar.gz" ], "version": "20.01.1" }, { "downloads": [ "https://github.com/NetApp/trident/archive/v23.01.1.tar.gz" ], "version": "23.01.1" }, { "downloads": [ "https://github.com/NetApp/trident/archive/v24.02.0.tar.gz" ], "version": "24.02.0" } ] }, "trilinos": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "adios2", "binder", "blas", "boost", "c", "cgns", "cmake", "cuda", "cxx", "fortran", "gmake", "hdf5", "hip", "hsa-rocr-dev", "hwloc", "hypre", "hypre-cmake", "kokkos", "kokkos-kernels", "kokkos-nvcc-wrapper", "lapack", "libx11", "llvm-amdgpu", "matio", "metis", "mpi", "mumps", "netcdf-c", "ninja", "parallel-netcdf", "parmetis", "py-mpi4py", "py-numpy", "py-pybind11", "python", "scalapack", "strumpack", "suite-sparse", "superlu-dist", "swig", "zlib-api" ], "downloads": [ "https://github.com/trilinos/Trilinos/archive/refs/tags/trilinos-release-12-12-1.tar.gz", "https://github.com/trilinos/Trilinos.git" ], "homepages": [ "https://trilinos.github.io" ], "licenses": [], "maintainers": [ "ccober6", "cgcgcg", "fryeguy52", "jwillenbring", "keitat", "kuberry", "psakievich", "rppawlo", "sebrowne" ], "name": "trilinos", "patches": [ "shylu-node-optional.patch when @13:14.4.0+shylu", "umfpack_from_suitesparse.patch when @11.14.1:12.8.1", "xlf_seacas.patch when @12.10.1:12.12.1 %xl", "xlf_tpetra.patch when @12.12.1 %xl", "xlf_seacas.patch when @12.10.1:12.12.1 %xl_r", "xlf_tpetra.patch when @12.12.1 %xl_r", "xlf_seacas.patch when @12.10.1:12.12.1 %clang", "xlf_tpetra.patch when @12.12.1 %clang", "fix_clang_errors_12_18_1.patch when @12.18.1 %clang", "cray_secas_12_12_1.patch when @12.12.1 %cce", "cray_secas.patch when @12.14.1:12 %cce", "https://github.com/trilinos/Trilinos/commit/c8b788d7e6e213a2828201ebdc00cde181e3b71b.patch?full_index=1 when @:13.4+complex", "fix_cxx14_cuda11.patch when @13.0.0:13.0.1 cxxstd=14 ^cuda@11:", "0001-use-the-gcnArchName-inplace-of-gcnArch-as-gcnArch-is.patch when @15.0.0 ^hip@6.0+rocm", "cstdint_gcc13.patch when @13.4.0:13.4.1 %gcc@13.0.0:", "https://github.com/trilinos/Trilinos/commit/b17f20a0b91e0b9fc5b1b0af3c8a34e2a4874f3f.patch?full_index=1 when @13.0.0:13.0.1+teko gotype=long", "13.4.1-kokkoskernel-patch2296.patch when @13.4.1 %oneapi@2025:", "13.4.1-patch11600.patch when @13.4.1 %oneapi@2025:", "14-14.2-kokkoskernel-patch2296.patch when @14 %oneapi@2025:", "13.4.1-14-patch11676.patch when @13.4.1:14.0 %oneapi@2025:", "16-1-0-stk-fpe-exceptions.patch when @=16.1.0+stk platform=darwin", "16-1-0-stk-size_t.patch when @=16.1.0+stk" ], "summary": "The Trilinos Project is an effort to develop algorithms and enabling\ntechnologies within an object-oriented software framework for the\nsolution of large-scale, complex multi-physics engineering and\nscientific problems. A unique design feature of Trilinos is its focus on\npackages.\n", "version": [ { "downloads": [ "https://github.com/trilinos/Trilinos/archive/refs/tags/trilinos-release-11-14-1.tar.gz" ], "version": "11.14.1" }, { "downloads": [ "https://github.com/trilinos/Trilinos/archive/refs/tags/trilinos-release-11-14-2.tar.gz" ], "version": "11.14.2" }, { "downloads": [ "https://github.com/trilinos/Trilinos/archive/refs/tags/trilinos-release-11-14-3.tar.gz" ], "version": "11.14.3" }, { "downloads": [ "https://github.com/trilinos/Trilinos/archive/refs/tags/trilinos-release-12-0-1.tar.gz" ], "version": "12.0.1" }, { "downloads": [ "https://github.com/trilinos/Trilinos/archive/refs/tags/trilinos-release-12-10-1.tar.gz" ], "version": "12.10.1" }, { "downloads": [ "https://github.com/trilinos/Trilinos/archive/refs/tags/trilinos-release-12-12-1.tar.gz" ], "version": "12.12.1" }, { "downloads": [ "https://github.com/trilinos/Trilinos/archive/refs/tags/trilinos-release-12-14-1.tar.gz" ], "version": 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It also provides drivers to automate the configuration and\nexecution of Unified Forecast System (UFS) components, providing\nflexibility, interoperability, and usability to various UFS\nApplications.\n", "version": [ { "downloads": [ "https://github.com/ufs-community/uwtools/archive/refs/tags/v2.6.2.tar.gz" ], "version": "2.6.2" }, { "downloads": [ "https://github.com/ufs-community/uwtools/archive/refs/tags/v2.7.2.tar.gz" ], "version": "2.7.2" }, { "downloads": [ "https://github.com/ufs-community/uwtools/archive/refs/tags/v2.8.2.tar.gz" ], "version": "2.8.2" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/ufs-community/uwtools.git" } ], "version": "main" } ] }, "vacuumms": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cuda", "cxx", "gmake", "libice", "libsm", "libtiff", "libx11", "libxext", "ninja", "voropp" ], "downloads": [ "https://github.com/VACUUMMS/VACUUMMS/archive/refs/tags/vdevelop.tar.gz", "https://github.com/VACUUMMS/VACUUMMS.git" ], "homepages": [ "https://github.com/VACUUMMS/VACUUMMS" ], "licenses": [ "MIT" ], "maintainers": [ "frankwillmore" ], "name": "vacuumms", "patches": [], "summary": "VACUUMMS: (Void Analysis Codes and Unix Utilities for Molecular Modeling\nand Simulation) is a collection of research codes for the compuational\nanalysis of free volume in molecular structures, including the\ngeneration of code for the production of high quality ray-traced images\nand videos. Note that production of the images from the generated code\nis considered post-processing and requires POVRay and feh (on X11\nsystems) as post-processing dependencies. VACUUMMS has been tested under\nLinux on x86_64 and ARM64. 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It is a\npartial Java port of VarDict variant caller.\n", "version": [ { "downloads": [ "https://github.com/AstraZeneca-NGS/VarDictJava/releases/download/v1.5.1/VarDict-1.5.1.tar" ], "version": "1.5.1" }, { "downloads": [ "https://github.com/AstraZeneca-NGS/VarDictJava/releases/download/v1.8.3/VarDict-1.8.3.tar" ], "version": "1.8.3" } ] }, "variorum": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "c", "cmake", "cuda", "cxx", "fortran", "gmake", "hwloc", "jansson", "ninja" ], "downloads": [ "https://github.com/llnl/variorum/archive/v0.8.0.tar.gz", "https://github.com/llnl/variorum/archive/v0.7.0.tar.gz", "https://github.com/llnl/variorum/archive/v0.6.0.tar.gz", "https://github.com/llnl/variorum/archive/v0.5.0.tar.gz", "https://github.com/llnl/variorum/archive/v0.4.1.tar.gz", "https://github.com/llnl/variorum/archive/v0.4.0.tar.gz", "https://github.com/llnl/variorum/archive/v0.3.0.tar.gz", "https://github.com/llnl/variorum/archive/v0.2.0.tar.gz", 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It compiles\nsynthesizable Verilog (not test-bench code!), plus some PSL,\nSystemVerilog and Synthesis assertions into C++ or SystemC code. It is\ndesigned for large projects where fast simulation performance is of\nprimary concern, and is especially well suited to generate executable\nmodels of CPUs for embedded software design teams. Please do not\ndownload this program if you are expecting a full featured replacement\nfor NC-Verilog, VCS or another commercial Verilog simulator or Verilog\ncompiler for a little project! (Try Icarus instead.) However, if you are\nlooking for a path to migrate synthesizable Verilog to C++ or SystemC,\nand writing just a touch of C code and Makefiles doesn't scare you off,\nthis is the free Verilog compiler for you. Verilator supports the\nsynthesis subset of Verilog, plus initial statements, proper\nblocking/non-blocking assignments, functions, tasks, multi-dimensional\narrays, and signed numbers. 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Verrou helps you look for floating-point\nround-off errors in programs. It implements a stochastic floating-point\narithmetic based on random rounding: all floating-point operations are\nperturbed by randomly switching rounding modes. 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It can be installed after VisIt is\ninstalled along CGNS library.\n", "version": [ { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.10.1/visit2.10.1.tar.gz" ], "version": "2.10.1" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.10.2/visit2.10.2.tar.gz" ], "version": "2.10.2" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.10.3/visit2.10.3.tar.gz" ], "version": "2.10.3" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.12.2/visit2.12.2.tar.gz" ], "version": "2.12.2" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.12.3/visit2.12.3.tar.gz" ], "version": "2.12.3" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.13.0/visit2.13.0.tar.gz" ], "version": "2.13.0" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.13.3/visit2.13.3.tar.gz" ], "version": "2.13.3" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v3.0.1/visit3.0.1.tar.gz" ], "version": "3.0.1" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v3.1.1/visit3.1.1.tar.gz" ], "version": "3.1.1" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v3.1.4/visit3.1.4.tar.gz" ], "version": "3.1.4" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v3.2.0/visit3.2.0.tar.gz" ], "version": "3.2.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/visit-dav/visit.git" } ], "version": "develop" }, { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/visit-CGNS.tgz" ], "version": "local" } ] }, "visit-ffp": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "ninja", "stripack", "visit" ], "downloads": [ "https://github.com/visit-dav/visit/releases/download/vdevelop/visitdevelop.tar.gz", "https://github.com/visit-dav/visit/releases/download/v3.2.0/visit3.2.0.tar.gz", "https://github.com/visit-dav/visit/releases/download/v3.1.4/visit3.1.4.tar.gz", "https://github.com/visit-dav/visit/releases/download/v3.1.1/visit3.1.1.tar.gz", "https://github.com/visit-dav/visit/releases/download/v3.0.1/visit3.0.1.tar.gz", "file:///home/runner/work/packages.spack.io/packages.spack.io/visit-ffp.tgz", "https://github.com/visit-dav/visit.git" ], "homepages": [ "https://wci.llnl.gov/simulation/computer-codes/visit/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "cessenat", "cyrush" ], "name": "visit-ffp", "patches": [], "summary": "This is the FFP Plug-In for VisIt. Can be installed after VisIt is\ninstalled with/without the STRIPACK library.\n", "version": [ { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v3.0.1/visit3.0.1.tar.gz" ], "version": "3.0.1" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v3.1.1/visit3.1.1.tar.gz" ], "version": "3.1.1" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v3.1.4/visit3.1.4.tar.gz" ], "version": "3.1.4" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v3.2.0/visit3.2.0.tar.gz" ], "version": "3.2.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/visit-dav/visit.git" } ], "version": "develop" }, { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/visit-ffp.tgz" ], "version": "local" } ] }, "visit-mfem": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "mfem", "ninja", "visit" ], "downloads": [ "https://github.com/visit-dav/visit/releases/download/vdevelop/visitdevelop.tar.gz", "https://github.com/visit-dav/visit/releases/download/v3.2.0/visit3.2.0.tar.gz", "https://github.com/visit-dav/visit/releases/download/v3.1.4/visit3.1.4.tar.gz", "https://github.com/visit-dav/visit/releases/download/v3.1.1/visit3.1.1.tar.gz", "https://github.com/visit-dav/visit/releases/download/v3.0.1/visit3.0.1.tar.gz", "https://github.com/visit-dav/visit/releases/download/v2.13.3/visit2.13.3.tar.gz", "https://github.com/visit-dav/visit/releases/download/v2.13.0/visit2.13.0.tar.gz", "https://github.com/visit-dav/visit/releases/download/v2.12.3/visit2.12.3.tar.gz", "https://github.com/visit-dav/visit/releases/download/v2.12.2/visit2.12.2.tar.gz", "https://github.com/visit-dav/visit/releases/download/v2.10.3/visit2.10.3.tar.gz", "https://github.com/visit-dav/visit/releases/download/v2.10.2/visit2.10.2.tar.gz", "https://github.com/visit-dav/visit/releases/download/v2.10.1/visit2.10.1.tar.gz", "file:///home/runner/work/packages.spack.io/packages.spack.io/visit-MFEM.tgz", "https://github.com/visit-dav/visit.git" ], "homepages": [ "https://wci.llnl.gov/simulation/computer-codes/visit/" ], "licenses": [], "maintainers": [ "cessenat", "cyrush" ], "name": "visit-mfem", "patches": [], "summary": "This is the MFEM Plug-In for VisIt. It can be installed after VisIt is\ninstalled along MFEM library.\n", "version": [ { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.10.1/visit2.10.1.tar.gz" ], "version": "2.10.1" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.10.2/visit2.10.2.tar.gz" ], "version": "2.10.2" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.10.3/visit2.10.3.tar.gz" ], "version": "2.10.3" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.12.2/visit2.12.2.tar.gz" ], "version": "2.12.2" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.12.3/visit2.12.3.tar.gz" ], "version": "2.12.3" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.13.0/visit2.13.0.tar.gz" ], "version": "2.13.0" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.13.3/visit2.13.3.tar.gz" ], "version": "2.13.3" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v3.0.1/visit3.0.1.tar.gz" ], "version": "3.0.1" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v3.1.1/visit3.1.1.tar.gz" ], "version": "3.1.1" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v3.1.4/visit3.1.4.tar.gz" ], "version": "3.1.4" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v3.2.0/visit3.2.0.tar.gz" ], "version": "3.2.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/visit-dav/visit.git" } ], "version": "develop" }, { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/visit-MFEM.tgz" ], "version": "local" } ] }, "visit-silo": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "ninja", "silo", "visit" ], "downloads": [ "https://github.com/visit-dav/visit/releases/download/vdevelop/visitdevelop.tar.gz", "https://github.com/visit-dav/visit/releases/download/v3.1.4/visit3.1.4.tar.gz", "https://github.com/visit-dav/visit/releases/download/v3.1.3/visit3.1.3.tar.gz", "https://github.com/visit-dav/visit/releases/download/v3.1.2/visit3.1.2.tar.gz", "https://github.com/visit-dav/visit/releases/download/v3.1.1/visit3.1.1.tar.gz", "https://github.com/visit-dav/visit/releases/download/v3.0.1/visit3.0.1.tar.gz", "https://github.com/visit-dav/visit/releases/download/v2.13.3/visit2.13.3.tar.gz", "https://github.com/visit-dav/visit/releases/download/v2.13.0/visit2.13.0.tar.gz", "https://github.com/visit-dav/visit/releases/download/v2.12.3/visit2.12.3.tar.gz", "https://github.com/visit-dav/visit/releases/download/v2.12.2/visit2.12.2.tar.gz", "https://github.com/visit-dav/visit/releases/download/v2.10.3/visit2.10.3.tar.gz", "https://github.com/visit-dav/visit/releases/download/v2.10.2/visit2.10.2.tar.gz", "https://github.com/visit-dav/visit/releases/download/v2.10.1/visit2.10.1.tar.gz", "file:///home/runner/work/packages.spack.io/packages.spack.io/visit-Silo.tgz", "https://github.com/visit-dav/visit.git" ], "homepages": [ "https://wci.llnl.gov/simulation/computer-codes/visit/" ], "licenses": [], "maintainers": [ "cessenat", "cyrush" ], "name": "visit-silo", "patches": [], "summary": "This is the Silo Plug-In for VisIt. It can be installed after VisIt is\ninstalled along SILO library. It is made as an extension to VisIt that\ncan be activated or as an environment with a view: ~/.visit Complete\nexplanation at:\nhttps://github.com/spack/spack/pull/22907#issuecomment-824218296\n", "version": [ { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.10.1/visit2.10.1.tar.gz" ], "version": "2.10.1" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.10.2/visit2.10.2.tar.gz" ], "version": "2.10.2" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.10.3/visit2.10.3.tar.gz" ], "version": "2.10.3" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.12.2/visit2.12.2.tar.gz" ], "version": "2.12.2" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.12.3/visit2.12.3.tar.gz" ], "version": "2.12.3" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.13.0/visit2.13.0.tar.gz" ], "version": "2.13.0" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.13.3/visit2.13.3.tar.gz" ], "version": "2.13.3" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v3.0.1/visit3.0.1.tar.gz" ], "version": "3.0.1" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v3.1.1/visit3.1.1.tar.gz" ], "version": "3.1.1" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v3.1.2/visit3.1.2.tar.gz" ], "version": "3.1.2" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v3.1.3/visit3.1.3.tar.gz" ], "version": "3.1.3" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v3.1.4/visit3.1.4.tar.gz" ], "version": "3.1.4" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/visit-dav/visit.git" } ], "version": "develop" }, { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/visit-Silo.tgz" ], "version": "local" } ] }, "visit-unv": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "ninja", "visit" ], "downloads": [ "https://github.com/visit-dav/visit/releases/download/vdevelop/visitdevelop.tar.gz", "https://github.com/visit-dav/visit/releases/download/v3.2.0/visit3.2.0.tar.gz", "https://github.com/visit-dav/visit/releases/download/v3.1.4/visit3.1.4.tar.gz", "https://github.com/visit-dav/visit/releases/download/v3.1.1/visit3.1.1.tar.gz", "https://github.com/visit-dav/visit/releases/download/v3.0.1/visit3.0.1.tar.gz", "https://github.com/visit-dav/visit/releases/download/v2.13.3/visit2.13.3.tar.gz", "https://github.com/visit-dav/visit/releases/download/v2.13.0/visit2.13.0.tar.gz", "https://github.com/visit-dav/visit/releases/download/v2.12.3/visit2.12.3.tar.gz", "https://github.com/visit-dav/visit/releases/download/v2.12.2/visit2.12.2.tar.gz", "https://github.com/visit-dav/visit/releases/download/v2.10.3/visit2.10.3.tar.gz", "https://github.com/visit-dav/visit/releases/download/v2.10.2/visit2.10.2.tar.gz", "https://github.com/visit-dav/visit/releases/download/v2.10.1/visit2.10.1.tar.gz", "file:///home/runner/work/packages.spack.io/packages.spack.io/visit-unv.tgz", "https://github.com/visit-dav/visit.git" ], "homepages": [ "https://wci.llnl.gov/simulation/computer-codes/visit/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "cessenat", "cyrush" ], "name": "visit-unv", "patches": [], "summary": "This is the UNV Plug-In for VisIt.\n", "version": [ { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.10.1/visit2.10.1.tar.gz" ], "version": "2.10.1" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.10.2/visit2.10.2.tar.gz" ], "version": "2.10.2" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.10.3/visit2.10.3.tar.gz" ], "version": "2.10.3" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.12.2/visit2.12.2.tar.gz" ], "version": "2.12.2" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.12.3/visit2.12.3.tar.gz" ], "version": "2.12.3" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.13.0/visit2.13.0.tar.gz" ], "version": "2.13.0" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v2.13.3/visit2.13.3.tar.gz" ], "version": "2.13.3" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v3.0.1/visit3.0.1.tar.gz" ], "version": "3.0.1" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v3.1.1/visit3.1.1.tar.gz" ], "version": "3.1.1" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v3.1.4/visit3.1.4.tar.gz" ], "version": "3.1.4" }, { "downloads": [ "https://github.com/visit-dav/visit/releases/download/v3.2.0/visit3.2.0.tar.gz" ], "version": "3.2.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/visit-dav/visit.git" } ], "version": "develop" }, { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/visit-unv.tgz" ], "version": "local" } ] }, "viskores": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "c", "cmake", "cuda", "cxx", "gmake", "hip", "hsa-rocr-dev", "kokkos", "llvm-amdgpu", "llvm-openmp", "mpi", "ninja", "rocthrust", "tbb" ], "downloads": [ "https://github.com/Viskores/Viskores/archive/refs/tags/vmaster.tar.gz", "https://github.com/Viskores/Viskores/archive/refs/tags/v1.1.0.tar.gz", "https://github.com/Viskores/Viskores/archive/refs/tags/v1.0.0.tar.gz", "https://github.com/Viskores/Viskores/archive/refs/tags/vrelease.tar.gz", "https://github.com/Viskores/Viskores.git" ], "homepages": [ "https://github.com/Viskores/viskores" ], "licenses": [], "maintainers": [ "kmorel", "vicentebolea" ], "name": "viskores", "patches": [], "summary": "Viskores is a toolkit of scientific visualization algorithms for\nemerging processor architectures. Viskores supports the fine-grained\nconcurrency for data analysis and visualization algorithms required to\ndrive extreme scale computing by providing abstract models for data and\nexecution that can be applied to a variety of algorithms across many\ndifferent processor architectures.\n", "version": [ { "downloads": [ "https://github.com/Viskores/Viskores/archive/refs/tags/v1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://github.com/Viskores/Viskores/archive/refs/tags/v1.1.0.tar.gz" ], "version": "1.1.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/Viskores/Viskores.git" } ], "version": "master" }, { "repositories": [ { "branch": "release", "type": "git", "url": "https://github.com/Viskores/Viskores.git" } ], "version": "release" } ] }, "vite": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "glew", "glm", "gmake", "ninja", "otf2", "qt", "tau" ], "downloads": [ "https://gitlab.inria.fr/solverstack/vite.git" ], "homepages": [ "https://solverstack.gitlabpages.inria.fr/vite/" ], "licenses": [ "CECILL-2.0" ], "maintainers": [ "trahay" ], "name": "vite", "patches": [], "summary": "ViTE is a trace explorer. It is a tool to visualize execution traces in\nPaje or OTF2 format for debugging and profiling parallel or distributed\napplications.\n", "version": [ { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://gitlab.inria.fr/solverstack/vite.git" } ], "version": "master" } ] }, "vizglow": { "alias": [], "categories": [], "dependencies": [ "fontconfig", "freetype", "libcanberra", "libxrender", "xterm", "zlib-api" ], "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/VizGlow_v2.2alpha20-Linux-x86_64-R09December2016-Install", "file:///home/runner/work/packages.spack.io/packages.spack.io/VizGlow_v2.2alpha17-R21November2016-Linux-x86_64-Install", "file:///home/runner/work/packages.spack.io/packages.spack.io/VizGlow_v2.2alpha15-Linux-x86_64-R31October2016-Install" ], "homepages": [ "https://esgeetech.com/products/vizglow-plasma-modeling/" ], "licenses": [], "maintainers": [], "name": "vizglow", "patches": [], "summary": "VizGlow software tool is used for high-fidelity multi-dimensional\nmodeling of non-equilibrium plasma discharges. Note: VizGlow is licensed\nsoftware. You will need to create an account on the EsgeeTech homepage\nand download VizGlow yourself. Spack will search your current directory\nfor a file of this format. Alternatively, add this file to a mirror so\nthat Spack can find it. For instructions on how to set up a mirror, see\nhttps://spack.readthedocs.io/en/latest/mirrors.html\n", "version": [ { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/VizGlow_v2.2alpha15-Linux-x86_64-R31October2016-Install" ], "version": "2.2alpha15" }, { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/VizGlow_v2.2alpha17-R21November2016-Linux-x86_64-Install" ], "version": "2.2alpha17" }, { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/VizGlow_v2.2alpha20-Linux-x86_64-R09December2016-Install" ], "version": "2.2alpha20" } ] }, "vmatch": { "alias": [], "categories": [], "dependencies": [ "c" ], "downloads": [ "http://www.vmatch.de/distributions/vmatch-2.3.0-Linux_x86_64-64bit.tar.gz" ], "homepages": [ "http://www.vmatch.de/" ], "licenses": [], "maintainers": [], "name": "vmatch", "patches": [], "summary": "Vmatch is a versatile software tool for efficiently solving large scale\nsequence matching tasks\n", "version": [ { "downloads": [ "http://www.vmatch.de/distributions/vmatch-2.3.0-Linux_x86_64-64bit.tar.gz" ], "version": "2.3.0" } ] }, "vmc": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja", "root" ], "downloads": [ "https://github.com/vmc-project/vmc/archive/v2-1.tar.gz", "https://github.com/vmc-project/vmc/archive/v2-0.tar.gz", "https://github.com/vmc-project/vmc/archive/v1-1-p1.tar.gz", "https://github.com/vmc-project/vmc/archive/v1-0-p3.tar.gz", "https://github.com/vmc-project/vmc/archive/v1-0-p2.tar.gz", "https://github.com/vmc-project/vmc/archive/v1-0-p1.tar.gz", "https://github.com/vmc-project/vmc.git" ], "homepages": [ "https://github.com/vmc-project/vmc" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [ "ChristianTackeGSI" ], "name": "vmc", "patches": [ "dict_fixes_101.patch when @1-0-p1" ], "summary": "The Virtual Monte Carlo (VMC) library\n", "version": [ { "downloads": [ "https://github.com/vmc-project/vmc/archive/v1-0-p1.tar.gz" ], "version": "1-0-p1" }, { "downloads": [ "https://github.com/vmc-project/vmc/archive/v1-0-p2.tar.gz" ], "version": "1-0-p2" }, { "downloads": [ "https://github.com/vmc-project/vmc/archive/v1-0-p3.tar.gz" ], "version": "1-0-p3" }, { "downloads": [ "https://github.com/vmc-project/vmc/archive/v1-1-p1.tar.gz" ], "version": "1-1-p1" }, { "downloads": [ "https://github.com/vmc-project/vmc/archive/v2-0.tar.gz" ], "version": "2-0" }, { "downloads": [ "https://github.com/vmc-project/vmc/archive/v2-1.tar.gz" ], "version": "2-1" } ] }, "vmd": { "alias": [], "categories": [], "dependencies": [ "gl", "gmake", "libx11", "libxi", "libxinerama", "patchelf" ], "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/vmd-1.9.3.bin.LINUXAMD64-CUDA8-OptiX4-OSPRay111p1.opengl.tar.gz" ], "homepages": [ "https://www.ks.uiuc.edu/Research/vmd/" ], "licenses": [], "maintainers": [], "name": "vmd", "patches": [], "summary": "VMD provides user-editable materials which can be applied to molecular\ngeometry. These material properties control the details of how VMD\nshades the molecular geometry, and how transparent or opaque the\ndisplayed molecular geometry is. With this feature, one can easily\ncreate nice looking transparent surfaces which allow inner structural\ndetails to be seen within a large molecular structure. The material\ncontrols can be particularly helpful when rendering molecular scenes\nusing external ray tracers, each of which typically differ slightly.\n", "version": [ { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/vmd-1.9.3.bin.LINUXAMD64-CUDA8-OptiX4-OSPRay111p1.opengl.tar.gz" ], "version": "1.9.3" } ] }, "volk": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja", "py-mako", "python" ], "downloads": [ "https://github.com/gnuradio/volk/archive/v2.3.0.tar.gz" ], "homepages": [ "https://github.com/gnuradio/volk" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [ "aweits" ], "name": "volk", "patches": [], "summary": "VOLK is the Vector-Optimized Library of Kernels. It is a library that\ncontains kernels of hand-written SIMD code for different mathematical\noperations. Since each SIMD architecture can be very different and no\ncompiler has yet come along to handle vectorization properly or highly\nefficiently, VOLK approaches the problem differently. For each\narchitecture or platform that a developer wishes to vectorize for, a new\nproto-kernel is added to VOLK. At runtime, VOLK will select the correct\nproto-kernel. In this way, the users of VOLK call a kernel for\nperforming the operation that is platform/architecture agnostic. This\nallows us to write portable SIMD code.\n", "version": [ { "downloads": [ "https://github.com/gnuradio/volk/archive/v2.3.0.tar.gz" ], "version": "2.3.0" } ] }, "voms": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "cxx", "expat", "gmake", "gnuconfig", "gsoap", "libtool", "m4", "openssl", "pkgconfig", "zlib-api" ], "downloads": [ "https://github.com/italiangrid/voms/archive/refs/tags/v2.1.2.tar.gz", "https://github.com/italiangrid/voms/archive/refs/tags/v2.1.0.tar.gz" ], "homepages": [ "https://github.com/italiangrid/voms" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "wdconinc" ], "name": "voms", "patches": [], "summary": "The VOMS native service and APIs.\n", "version": [ { "downloads": [ "https://github.com/italiangrid/voms/archive/refs/tags/v2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://github.com/italiangrid/voms/archive/refs/tags/v2.1.2.tar.gz" ], "version": "2.1.2" } ] }, "voropp": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://math.lbl.gov/voro++/download/dir/voro++-master.tar.gz", "https://math.lbl.gov/voro++/download/dir/voro++-0.4.6.tar.gz", "https://github.com/chr1shr/voro" ], "homepages": [ "https://math.lbl.gov/voro++/about.html" ], "licenses": [ "BSD-3-Clause-LBNL" ], "maintainers": [], "name": "voropp", "patches": [ "voro++-0.4.6-cmake.patch when @0.4.6" ], "summary": "Voro++ is a open source software library for the computation of the\nVoronoi diagram, a widely-used tessellation that has applications in\nmany scientific fields.\n", "version": [ { "downloads": [ "https://math.lbl.gov/voro++/download/dir/voro++-0.4.6.tar.gz" ], "version": "0.4.6" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/chr1shr/voro" } ], "version": "master" } ] }, "votca": { "alias": [], "categories": [], "dependencies": [ "boost", "cmake", "cxx", "eigen", "expat", "fftw-api", "gmake", "gromacs", "hdf5", "lammps", "libecpint", "libint", "libxc", "mkl", "ninja", "py-espresso", "py-h5py", "py-lxml", "py-pytest" ], "downloads": [ "https://github.com/votca/votca/tarball/vmaster", "https://github.com/votca/votca/tarball/v2025.1", "https://github.com/votca/votca/tarball/v2025", "https://github.com/votca/votca/tarball/v2024.2", "https://github.com/votca/votca/tarball/v2024.1", "https://github.com/votca/votca/tarball/v2024", "https://github.com/votca/votca/tarball/v2023", "https://github.com/votca/votca/tarball/v2022.1", "https://github.com/votca/votca/tarball/v2022", "https://github.com/votca/votca.git" ], "homepages": [ "https://www.votca.org" ], "licenses": [], "maintainers": [ "junghans" ], "name": "votca", "patches": [], "summary": "VOTCA is a software package which focuses on the analysis of molecular\ndynamics data, the development of systematic coarse-graining techniques\nas well as methods used for simulating microscopic charge (and exciton)\ntransport in disordered semiconductors.\n", "version": [ { "downloads": [ "https://github.com/votca/votca/tarball/v2022" ], "version": "2022" }, { "downloads": [ "https://github.com/votca/votca/tarball/v2022.1" ], "version": "2022.1" }, { "downloads": [ "https://github.com/votca/votca/tarball/v2023" ], "version": "2023" }, { "downloads": [ "https://github.com/votca/votca/tarball/v2024" ], "version": "2024" }, { "downloads": [ "https://github.com/votca/votca/tarball/v2024.1" ], "version": "2024.1" }, { "downloads": [ "https://github.com/votca/votca/tarball/v2024.2" ], "version": "2024.2" }, { "downloads": [ "https://github.com/votca/votca/tarball/v2025" ], "version": "2025" }, { "downloads": [ "https://github.com/votca/votca/tarball/v2025.1" ], "version": "2025.1" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/votca/votca.git" } ], "version": "master" } ] }, "vpfft": { "alias": [], "categories": [], "dependencies": [ "cxx", "eigen", "fftw", "gmake", "mpi" ], "downloads": [ "https://github.com/exmatex/VPFFT.git" ], "homepages": [ "http://www.exmatex.org/vpfft.html" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "vpfft", "patches": [], "summary": "Proxy Application. VPFFT is an implementation of a mesoscale\nmicromechanical materials model. By solving the viscoplasticity model,\nVPFFT simulates the evolution of a material under deformation. The\nsolution time to the viscoplasticity model, described by a set of\npartial differential equations, is significantly reduced by the\napplication of Fast Fourier Transform in the VPFFT algorithm.\n", "version": [ { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/exmatex/VPFFT.git" } ], "version": "develop" } ] }, "vpic": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "gmake", "mpi", "ninja" ], "downloads": [ "https://github.com/lanl/vpic.git" ], "homepages": [ "https://github.com/lanl/vpic" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "vpic", "patches": [], "summary": "VPIC is a general purpose particle-in-cell simulation code for modeling\nkinetic plasmas in one, two, or three spatial dimensions. It employs a\nsecond-order, explicit, leapfrog algorithm to update charged particle\npositions and velocities in order to solve the relativistic kinetic\nequation for each species in the plasma, along with a full Maxwell\ndescription for the electric and magnetic fields evolved via a second-\norder finite-difference-time-domain (FDTD) solve.\n", "version": [ { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/lanl/vpic.git" } ], "version": "develop" } ] }, "vsearch": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "bzip2", "c", "cxx", "gmake", "gnuconfig", "libtool", "m4", "zlib-api" ], "downloads": [ "https://github.com/torognes/vsearch/archive/v2.22.1.tar.gz", "https://github.com/torognes/vsearch/archive/v2.14.1.tar.gz", "https://github.com/torognes/vsearch/archive/v2.13.3.tar.gz", "https://github.com/torognes/vsearch/archive/v2.4.3.tar.gz" ], "homepages": [ "https://github.com/torognes/vsearch" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [ "snehring" ], "name": "vsearch", "patches": [], "summary": "VSEARCH is a versatile open-source tool for metagenomics.\n", "version": [ { "downloads": [ "https://github.com/torognes/vsearch/archive/v2.13.3.tar.gz" ], "version": "2.13.3" }, { "downloads": [ "https://github.com/torognes/vsearch/archive/v2.14.1.tar.gz" ], "version": "2.14.1" }, { "downloads": [ "https://github.com/torognes/vsearch/archive/v2.22.1.tar.gz" ], "version": "2.22.1" }, { "downloads": [ "https://github.com/torognes/vsearch/archive/v2.4.3.tar.gz" ], "version": "2.4.3" } ] }, "vsftpd": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "libcap" ], "downloads": [ "https://security.appspot.com/downloads/vsftpd-3.0.3.tar.gz", "https://security.appspot.com/downloads/vsftpd-3.0.2.tar.gz", "https://security.appspot.com/downloads/vsftpd-3.0.1.tar.gz" ], "homepages": [ "https://security.appspot.com/vsftpd.html" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "vsftpd", "patches": [], "summary": "vsftpd is a GPL licensed FTP server for UNIX systems, including Linux.\n", "version": [ { "downloads": [ "https://security.appspot.com/downloads/vsftpd-3.0.1.tar.gz" ], "version": "3.0.1" }, { "downloads": [ "https://security.appspot.com/downloads/vsftpd-3.0.2.tar.gz" ], "version": "3.0.2" }, { "downloads": [ "https://security.appspot.com/downloads/vsftpd-3.0.3.tar.gz" ], "version": "3.0.3" } ] }, "vt": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "zlib-api" ], "downloads": [ "https://github.com/atks/vt/archive/0.57721.tar.gz", "https://github.com/atks/vt/archive/0.5772.tar.gz", "https://github.com/atks/vt/archive/0.577.tar.gz" ], "homepages": [ "https://genome.sph.umich.edu/wiki/vt" ], "licenses": [], "maintainers": [], "name": "vt", "patches": [], "summary": "A tool set for short variant discovery in genetic sequence data.\n", "version": [ { "downloads": [ "https://github.com/atks/vt/archive/0.577.tar.gz" ], "version": "0.577" }, { "downloads": [ "https://github.com/atks/vt/archive/0.5772.tar.gz" ], "version": "0.5772" }, { "downloads": [ "https://github.com/atks/vt/archive/0.57721.tar.gz" ], "version": "0.57721" } ] }, "vtable-dumper": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "libelf" ], "downloads": [ "https://github.com/lvc/vtable-dumper/archive/1.2.tar.gz", "https://github.com/lvc/vtable-dumper/archive/1.1.tar.gz", "https://github.com/lvc/vtable-dumper/archive/1.0.tar.gz" ], "homepages": [ "https://github.com/lvc/vtable-dumper" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [], "name": "vtable-dumper", "patches": [], "summary": "A tool to list content of virtual tables in a shared library.\n", "version": [ { "downloads": [ "https://github.com/lvc/vtable-dumper/archive/1.0.tar.gz" ], "version": "1.0" }, { "downloads": [ "https://github.com/lvc/vtable-dumper/archive/1.1.tar.gz" ], "version": "1.1" }, { "downloads": [ 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VTK-m supports the fine-grained concurrency for\ndata analysis and visualization algorithms required to drive extreme\nscale computing by providing abstract models for data and execution that\ncan be applied to a variety of algorithms across many different\nprocessor architectures.\n", "version": [ { "downloads": [ "https://github.com/Kitware/VTK-m/archive/refs/tags/v1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://github.com/Kitware/VTK-m/archive/refs/tags/v1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://github.com/Kitware/VTK-m/archive/refs/tags/v1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://github.com/Kitware/VTK-m/archive/refs/tags/v1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://github.com/Kitware/VTK-m/archive/refs/tags/v1.5.0.tar.gz" ], "version": "1.5.0" }, { "downloads": [ "https://github.com/Kitware/VTK-m/archive/refs/tags/v1.5.1.tar.gz" ], "version": "1.5.1" }, { "repositories": [ { "commit": "c49390f2537c5ba8cf25bd39aa5c212d6eafcf61", "type": "git", "url": "https://github.com/Kitware/VTK-m.git" } ], "version": "1.5.2" }, { "repositories": [ { "commit": "a3b8525ef97d94996ae843db0dd4f675c38e8b1e", "type": "git", "url": "https://github.com/Kitware/VTK-m.git" } ], "version": "1.5.3" }, { "repositories": [ { "commit": "bbba2a1967b271cc393abd043716d957bca97972", "type": "git", "url": "https://github.com/Kitware/VTK-m.git" } ], "version": "1.5.4" }, { "repositories": [ { "commit": "d2d1c854adc8c0518802f153b48afd17646b6252", "type": "git", "url": "https://github.com/Kitware/VTK-m.git" } ], "version": "1.5.5" }, { "downloads": [ "https://github.com/Kitware/VTK-m/archive/refs/tags/v1.6.0.tar.gz" ], "version": "1.6.0" }, { "downloads": [ "https://github.com/Kitware/VTK-m/archive/refs/tags/v1.7.0.tar.gz" ], "version": "1.7.0" }, { "downloads": [ "https://github.com/Kitware/VTK-m/archive/refs/tags/v1.7.1.tar.gz" ], "version": "1.7.1" }, { "downloads": [ "https://github.com/Kitware/VTK-m/archive/refs/tags/v1.8.0.tar.gz" ], "version": "1.8.0" }, { "downloads": [ "https://github.com/Kitware/VTK-m/archive/refs/tags/v1.9.0.tar.gz" ], "version": "1.9.0" }, { "downloads": [ "https://github.com/Kitware/VTK-m/archive/refs/tags/v2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://github.com/Kitware/VTK-m/archive/refs/tags/v2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://github.com/Kitware/VTK-m/archive/refs/tags/v2.2.0.tar.gz" ], "version": "2.2.0" }, { "downloads": [ "https://github.com/Kitware/VTK-m/archive/refs/tags/v2.3.0.tar.gz" ], "version": "2.3.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/Kitware/VTK-m.git" } ], "version": "master" }, { "repositories": [ { "branch": "release", "type": "git", "url": "https://github.com/Kitware/VTK-m.git" } ], "version": "release" } ] }, "vvtest": { "alias": [], "categories": [], "dependencies": [ "c", "python" ], "downloads": [ "https://github.com/rrdrake/vvtest/archive/1.2.0.tar.gz", "https://github.com/rrdrake/vvtest/archive/1.1.0.tar.gz", "https://github.com/rrdrake/vvtest/archive/1.0.0.tar.gz", "https://github.com/rrdrake/vvtest.git" ], "homepages": [ "https://github.com/rrdrake/vvtest" ], "licenses": [ "Unlicense" ], "maintainers": [ "mrmundt", "rrdrake" ], "name": "vvtest", "patches": [], "summary": "Vvtest is a test harness originally authored by Richard Drake for the\nAlegra-Emphasis project, written in pure Python, and designed for\nrunning verification, validation, and regression type tests. Being a\nstand-alone product, it can also be used by analysts to help manage sets\nof simulations, especially useful on batch platforms.\n", "version": [ { "downloads": [ "https://github.com/rrdrake/vvtest/archive/1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://github.com/rrdrake/vvtest/archive/1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://github.com/rrdrake/vvtest/archive/1.2.0.tar.gz" ], "version": "1.2.0" } ] }, "w3emc": { "alias": [], "categories": [], "dependencies": [ "bacio", "bufr", "c", "cmake", "fortran", "gmake", "nemsio", "netcdf-fortran", "ninja", "sigio" ], "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-w3emc/archive/refs/tags/vdevelop.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-w3emc/archive/refs/tags/v2.12.0.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-w3emc/archive/refs/tags/v2.11.0.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-w3emc/archive/refs/tags/v2.10.0.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-w3emc/archive/refs/tags/v2.9.3.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-w3emc/archive/refs/tags/v2.9.2.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-w3emc/archive/refs/tags/v2.9.1.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-w3emc/archive/refs/tags/v2.9.0.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-w3emc/archive/refs/tags/v2.7.3.tar.gz", "https://github.com/NOAA-EMC/NCEPLIBS-w3emc" ], "homepages": [ "https://noaa-emc.github.io/NCEPLIBS-w3emc/" ], "licenses": [], "maintainers": [ "AlexanderRichert-NOAA", "Hang-Lei-NOAA", "edwardhartnett" ], "name": "w3emc", "patches": [], "summary": "This library contains Fortran 90 decoder/encoder routines for GRIB\nedition 1 with EMC changes. This is part of the NCEPLIBS project.\n", "version": [ { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-w3emc/archive/refs/tags/v2.10.0.tar.gz" ], "version": "2.10.0" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-w3emc/archive/refs/tags/v2.11.0.tar.gz" ], "version": "2.11.0" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-w3emc/archive/refs/tags/v2.12.0.tar.gz" ], "version": "2.12.0" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-w3emc/archive/refs/tags/v2.7.3.tar.gz" ], "version": "2.7.3" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-w3emc/archive/refs/tags/v2.9.0.tar.gz" ], "version": "2.9.0" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-w3emc/archive/refs/tags/v2.9.1.tar.gz" ], "version": "2.9.1" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-w3emc/archive/refs/tags/v2.9.2.tar.gz" ], "version": "2.9.2" }, { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-w3emc/archive/refs/tags/v2.9.3.tar.gz" ], "version": "2.9.3" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/NOAA-EMC/NCEPLIBS-w3emc" } ], "version": "develop" } ] }, "w3m": { "alias": [], "categories": [], "dependencies": [ "bdw-gc", "c", "cxx", "gdk-pixbuf", "gmake", "gnuconfig", "imlib2", "libx11", "ncurses", "termcap" ], "downloads": [ "https://salsa.debian.org/debian/w3m/-/archive/upstream/0.5.3+git20230121/w3m-upstream-0.5.3+git20230121.tar.gz", "https://salsa.debian.org/debian/w3m.git" ], "homepages": [ "https://w3m.sourceforge.net/index.en.html" ], "licenses": [ "MIT" ], "maintainers": [ "ronin_gw" ], "name": "w3m", "patches": [ "fix_redef.patch when @=0.5.3", "fix_gc.patch when @=0.5.3" ], "summary": " w3m is a text-based web browser as well as a pager like `more' or\n`less'. With w3m you can browse web pages through a terminal emulator\nwindow (xterm, rxvt or something like that). Moreover, w3m can be used\nas a text formatting tool which typesets HTML into plain text.\n", "version": [ { "downloads": [ "https://downloads.sourceforge.net/project/w3m/w3m/w3m-0.5.3/w3m-0.5.3.tar.gz" ], "version": "0.5.3" }, { "downloads": [ "https://salsa.debian.org/debian/w3m/-/archive/upstream/0.5.3+git20230121/w3m-upstream-0.5.3+git20230121.tar.gz" ], "version": "0.5.3.git20230121" } ] }, "w3nco": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "fortran", "gmake", "ninja" ], "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-w3nco/archive/refs/tags/v2.4.1.tar.gz" ], "homepages": [ "https://noaa-emc.github.io/NCEPLIBS/NCEPLIBS-w3nco/" ], "licenses": [], "maintainers": [ "AlexanderRichert-NOAA", "Hang-Lei-NOAA", "edwardhartnett", "t-brown" ], "name": "w3nco", "patches": [], "summary": "This library contains Fortran 90 decoder/encoder routines for GRIB\nedition 1 with NCO changes. This library is deprecated; all\nfunctionality has been moved to the w3emc library. This is part of the\nNCEPLIBS project.\n", "version": [ { "downloads": [ "https://github.com/NOAA-EMC/NCEPLIBS-w3nco/archive/refs/tags/v2.4.1.tar.gz" ], "version": "2.4.1" } ] }, "wannier90": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "blas", "c", "fortran", "gmake", "lapack", "mpi" ], "downloads": [ "https://github.com/wannier-developers/wannier90/archive/v3.1.0.tar.gz", "https://github.com/wannier-developers/wannier90.git" ], "homepages": [ "https://wannier.org" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "wannier90", "patches": [], "summary": "Wannier90 calculates maximally-localised Wannier functions (MLWFs).\nWannier90 is released under the GNU General Public License.\n", "version": [ { "downloads": [ "https://github.com/wannier-developers/wannier90/archive/v2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://github.com/wannier-developers/wannier90/archive/v2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://github.com/wannier-developers/wannier90/archive/v3.0.0.tar.gz" ], "version": "3.0.0" }, { "downloads": [ "https://github.com/wannier-developers/wannier90/archive/v3.1.0.tar.gz" ], "version": "3.1.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/wannier-developers/wannier90.git" } ], "version": "develop" } ] }, "warpx": { "alias": [], "categories": [ "e4s", "ecp", "hpsf" ], "dependencies": [ "amrex", "ascent", "blaspp", "boost", "c", "cmake", "cuda", "cxx", "fftw", "gmake", "intel-oneapi-mkl", "lapackpp", "libcatalyst", "llvm-openmp", "mpi", "ninja", "openpmd-api", "pkgconfig", "py-amrex", "py-mpi4py", "py-numpy", "py-periodictable", "py-picmistandard", "py-pip", "py-pybind11", "py-setuptools", "py-wheel", "python", "python-venv", "rocfft", "rocprim", "rocrand", "sensei" ], "downloads": [ "https://github.com/BLAST-WarpX/warpx/archive/refs/tags/develop.tar.gz", "https://github.com/BLAST-WarpX/warpx/archive/refs/tags/25.11.tar.gz", "https://github.com/BLAST-WarpX/warpx/archive/refs/tags/25.04.tar.gz", "https://github.com/BLAST-WarpX/warpx.git" ], "homepages": [ "https://ecp-warpx.github.io" ], "licenses": [ "BSD-3-Clause-LBNL" ], "maintainers": [ "EZoni", "RemiLehe", "ax3l", "dpgrote" ], "name": "warpx", "patches": [], "summary": "WarpX is an advanced electromagnetic Particle-In-Cell code. It supports\nmany features including Perfectly-Matched Layers (PML) and mesh\nrefinement. In addition, WarpX is a highly-parallel and highly-optimized\ncode and features hybrid GPU/OpenMP/MPI parallelization and load\nbalancing capabilities.\n", "version": [ { "downloads": [ "https://github.com/BLAST-WarpX/warpx/archive/refs/tags/25.04.tar.gz" ], "version": "25.04" }, { "downloads": [ "https://github.com/BLAST-WarpX/warpx/archive/refs/tags/25.11.tar.gz" ], "version": "25.11" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/BLAST-WarpX/warpx.git" } ], "version": "develop" } ] }, "wasi-sdk": { "alias": [ { "alias_for": "wasi-sdk-prebuilt", "name": "wasi-sdk" } ], "categories": [], "dependencies": [], "downloads": [ "https://github.com/WebAssembly/wasi-sdk/releases/download/wasi-sdk-14/wasi-sdk-14.0-linux.tar.gz" ], "homepages": [ "https://wasi.dev/" ], "licenses": [ "APACHE-2.0" ], "maintainers": [ "teaguesterling" ], "name": "wasi-sdk-prebuilt", "patches": [], "summary": " A group of standard API specifications for 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], "maintainers": [ "teaguesterling" ], "name": "wasi-sdk-prebuilt", "patches": [], "summary": " A group of standard API specifications for software compiled to the W3C\nWebAssembly standard\n", "version": [ { "downloads": [ "https://github.com/WebAssembly/wasi-sdk/releases/download/wasi-sdk-14/wasi-sdk-14.0-linux.tar.gz" ], "version": "14.0" }, { "downloads": [ "https://github.com/WebAssembly/wasi-sdk/releases/download/wasi-sdk-15/wasi-sdk-15.0-linux.tar.gz" ], "version": "15.0" }, { "downloads": [ "https://github.com/WebAssembly/wasi-sdk/releases/download/wasi-sdk-16/wasi-sdk-16.0-linux.tar.gz" ], "version": "16.0" }, { "downloads": [ "https://github.com/WebAssembly/wasi-sdk/releases/download/wasi-sdk-17/wasi-sdk-17.0-linux.tar.gz" ], "version": "17.0" }, { "downloads": [ "https://github.com/WebAssembly/wasi-sdk/releases/download/wasi-sdk-19/wasi-sdk-19.0-linux.tar.gz" ], "version": "19.0" }, { "downloads": [ 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The\ncompositor can be a standalone display server running on Linux kernel\nmodesetting and evdev input devices, an X application, or a wayland\nclient itself. The clients can be traditional applications, X\nservers(rootless or fullscreen) or other display servers.\n", "version": [ { "downloads": [ "https://gitlab.freedesktop.org/wayland/wayland/-/archive/1.17.92/wayland-1.17.92.tar.gz" ], "version": "1.17.92" }, { "downloads": [ "https://gitlab.freedesktop.org/wayland/wayland/-/archive/1.17.93/wayland-1.17.93.tar.gz" ], "version": "1.17.93" }, { "downloads": [ "https://gitlab.freedesktop.org/wayland/wayland/-/archive/1.18.0/wayland-1.18.0.tar.gz" ], "version": "1.18.0" }, { "downloads": [ "https://gitlab.freedesktop.org/wayland/wayland/-/archive/1.19.0/wayland-1.19.0.tar.gz" ], "version": "1.19.0" }, { "downloads": [ "https://gitlab.freedesktop.org/wayland/wayland/-/archive/1.20.0/wayland-1.20.0.tar.gz" ], "version": "1.20.0" }, { "downloads": [ "https://gitlab.freedesktop.org/wayland/wayland/-/archive/1.21.0/wayland-1.21.0.tar.gz" ], "version": "1.21.0" }, { "downloads": [ "https://gitlab.freedesktop.org/wayland/wayland/-/archive/1.22.0/wayland-1.22.0.tar.gz" ], "version": "1.22.0" }, { "downloads": [ "https://gitlab.freedesktop.org/wayland/wayland/-/archive/1.23.0/wayland-1.23.0.tar.gz" ], "version": "1.23.0" }, { "downloads": [ "https://gitlab.freedesktop.org/wayland/wayland/-/archive/1.23.1/wayland-1.23.1.tar.gz" ], "version": "1.23.1" } ] }, "wayland-protocols": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "gmake", "gnuconfig", "libtool", "m4", "meson", "ninja", "pkgconfig", "wayland" ], "downloads": [ "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.45/wayland-protocols-1.45.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.44/wayland-protocols-1.44.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.43/wayland-protocols-1.43.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.42/wayland-protocols-1.42.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.41/wayland-protocols-1.41.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.40/wayland-protocols-1.40.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.39/wayland-protocols-1.39.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.38/wayland-protocols-1.38.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.37/wayland-protocols-1.37.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.36/wayland-protocols-1.36.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.35/wayland-protocols-1.35.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.34/wayland-protocols-1.34.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.33/wayland-protocols-1.33.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.32/wayland-protocols-1.32.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.31/wayland-protocols-1.31.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.30/wayland-protocols-1.30.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.29/wayland-protocols-1.29.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.28/wayland-protocols-1.28.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.27/wayland-protocols-1.27.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.26/wayland-protocols-1.26.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.25/wayland-protocols-1.25.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.24/wayland-protocols-1.24.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.23/wayland-protocols-1.23.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.22/wayland-protocols-1.22.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.20/wayland-protocols-1.20.tar.gz", "https://gitlab.freedesktop.org/wayland/wayland-protocols" ], "homepages": [ "https://wayland.freedesktop.org/" ], "licenses": [ "MIT" ], "maintainers": [ "wdconinc" ], "name": "wayland-protocols", "patches": [], "summary": "wayland-protocols contains Wayland protocols that add functionality not\navailable in the Wayland core protocol. Such protocols either add\ncompletely new functionality, or extend the functionality of some other\nprotocol either in Wayland core, or some other protocol in wayland-\nprotocols.\n", "version": [ { "downloads": [ "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.20/wayland-protocols-1.20.tar.gz" ], "version": "1.20" }, { "downloads": [ "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.22/wayland-protocols-1.22.tar.gz" ], "version": "1.22" }, { "downloads": [ "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.23/wayland-protocols-1.23.tar.gz" ], "version": "1.23" }, { "downloads": [ "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.24/wayland-protocols-1.24.tar.gz" ], "version": "1.24" }, { "downloads": [ "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.25/wayland-protocols-1.25.tar.gz" ], "version": "1.25" }, { "downloads": [ 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"downloads": [ "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.33/wayland-protocols-1.33.tar.gz" ], "version": "1.33" }, { "downloads": [ "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.34/wayland-protocols-1.34.tar.gz" ], "version": "1.34" }, { "downloads": [ "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.35/wayland-protocols-1.35.tar.gz" ], "version": "1.35" }, { "downloads": [ "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.36/wayland-protocols-1.36.tar.gz" ], "version": "1.36" }, { "downloads": [ "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.37/wayland-protocols-1.37.tar.gz" ], "version": "1.37" }, { "downloads": [ "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.38/wayland-protocols-1.38.tar.gz" ], "version": "1.38" }, { "downloads": [ "https://gitlab.freedesktop.org/wayland/wayland-protocols/-/archive/1.39/wayland-protocols-1.39.tar.gz" ], 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"https://download.microsoft.com/download/B/5/8/B58D625D-17D6-47A8-B3D3-668670B6D1EB/wdk/wdksetup.exe", "https://download.microsoft.com/download/7/D/D/7DD48DE6-8BDA-47C0-854A-539A800FAA90/wdk/wdksetup.exe", "https://download.microsoft.com/download/4/E/0/4E07EAAD-E394-4EA8-B2B8-D46E46A409C5/wdk/wdksetup.exe", "https://download.microsoft.com/download/8/1/6/816FE939-15C7-4185-9767-42ED05524A95/wdk/wdksetup.exe" ], "homepages": [ "https://learn.microsoft.com/en-us/windows-hardware/drivers/" ], "licenses": [], "maintainers": [], "name": "win-wdk", "patches": [], "summary": " Windows Driver Kit development package\n", "version": [ { "downloads": [ "https://download.microsoft.com/download/8/1/6/816FE939-15C7-4185-9767-42ED05524A95/wdk/wdksetup.exe" ], "version": "10.0.14393" }, { "downloads": [ "https://download.microsoft.com/download/4/E/0/4E07EAAD-E394-4EA8-B2B8-D46E46A409C5/wdk/wdksetup.exe" ], "version": "10.0.15063" }, { "downloads": [ 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"https://download.microsoft.com/download/7e94e645-61e3-479b-811b-981b4c514d5d/KIT_BUNDLE_WDK_MEDIACREATION/wdksetup.exe" ], "version": "10.0.26100" } ] }, "winbison": { "alias": [], "categories": [ "windows", "detectable" ], "dependencies": [ "c", "cmake", "cxx", "gmake", "ninja" ], "downloads": [ "https://github.com/lexxmark/winflexbison/archive/v2.5.25.tar.gz", "https://github.com/lexxmark/winflexbison/archive/v2.5.24.tar.gz", "https://github.com/lexxmark/winflexbison/archive/v2.5.23.tar.gz", "https://github.com/lexxmark/winflexbison/archive/v2.5.22.tar.gz", "https://github.com/lexxmark/winflexbison/archive/v2.5.21.tar.gz", "https://github.com/lexxmark/winflexbison/archive/v2.5.20.tar.gz", "https://github.com/lexxmark/winflexbison/archive/v2.5.19.tar.gz", "https://github.com/lexxmark/winflexbison/archive/v2.5.18.tar.gz", "https://github.com/lexxmark/winflexbison/archive/v2.5.17.tar.gz", "https://github.com/lexxmark/winflexbison/archive/v2.5.16.tar.gz", "https://github.com/lexxmark/winflexbison/archive/v2.5.15.tar.gz", "https://github.com/lexxmark/winflexbison/archive/v2.5.14.tar.gz", "https://github.com/lexxmark/winflexbison/archive/v2.4.12.tar.gz" ], "homepages": [ "https://github.com/lexxmark/winflexbison#readme" ], "licenses": [ "GFDL-1.3-only" ], "maintainers": [], "name": "winbison", "patches": [], "summary": "Bison is a general-purpose parser generator that converts an annotated\ncontext-free grammar into a deterministic LR or generalized LR (GLR)\nparser employing LALR(1) parser tables.\n", "version": [ { "downloads": [ "https://github.com/lexxmark/winflexbison/archive/v2.4.12.tar.gz" ], "version": "2.4.12" }, { "downloads": [ "https://github.com/lexxmark/winflexbison/archive/v2.5.14.tar.gz" ], "version": "2.5.14" }, { "downloads": [ "https://github.com/lexxmark/winflexbison/archive/v2.5.15.tar.gz" ], "version": "2.5.15" }, { "downloads": [ "https://github.com/lexxmark/winflexbison/archive/v2.5.16.tar.gz" ], "version": "2.5.16" }, { "downloads": [ "https://github.com/lexxmark/winflexbison/archive/v2.5.17.tar.gz" ], "version": "2.5.17" }, { "downloads": [ "https://github.com/lexxmark/winflexbison/archive/v2.5.18.tar.gz" ], "version": "2.5.18" }, { "downloads": [ "https://github.com/lexxmark/winflexbison/archive/v2.5.19.tar.gz" ], "version": "2.5.19" }, { "downloads": [ "https://github.com/lexxmark/winflexbison/archive/v2.5.20.tar.gz" ], "version": "2.5.20" }, { "downloads": [ "https://github.com/lexxmark/winflexbison/archive/v2.5.21.tar.gz" ], "version": "2.5.21" }, { "downloads": [ "https://github.com/lexxmark/winflexbison/archive/v2.5.22.tar.gz" ], "version": "2.5.22" }, { "downloads": [ "https://github.com/lexxmark/winflexbison/archive/v2.5.23.tar.gz" ], "version": "2.5.23" }, { "downloads": [ "https://github.com/lexxmark/winflexbison/archive/v2.5.24.tar.gz" ], "version": "2.5.24" }, { "downloads": [ "https://github.com/lexxmark/winflexbison/archive/v2.5.25.tar.gz" ], "version": "2.5.25" } ] }, "windowswmproto": { "alias": [], "categories": [], "dependencies": [ "gmake", "gnuconfig" ], "downloads": [ "https://www.x.org/archive/individual/proto/windowswmproto-1.0.4.tar.gz" ], "homepages": [ "https://cgit.freedesktop.org/xorg/proto/windowswmproto" ], "licenses": [], "maintainers": [], "name": "windowswmproto", "patches": [], "summary": "This module provides the definition of the WindowsWM extension to the\nX11 protocol, used for coordination between an X11 server and the\nMicrosoft Windows native window manager. WindowsWM is only intended to\nbe used on Cygwin when running a rootless XWin server.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/proto/windowswmproto-1.0.4.tar.gz" ], "version": "1.0.4" } ] }, "wiredtiger": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gnuconfig", "lz4", "python", "rsync", "snappy", "swig", "zlib-api", "zstd" ], "downloads": [ "https://github.com/wiredtiger/wiredtiger/releases/download/10.0.0/wiredtiger-10.0.0.tar.bz2" ], "homepages": [ "https://source.wiredtiger.com/" ], "licenses": [], "maintainers": [], "name": "wiredtiger", "patches": [], "summary": "WiredTiger is an high performance, scalable, production quality, NoSQL,\nOpen Source extensible platform for data management.\n", "version": [ { "downloads": [ "https://github.com/wiredtiger/wiredtiger/releases/download/10.0.0/wiredtiger-10.0.0.tar.bz2" ], "version": "10.0.0" } ] }, "wireshark": { "alias": [], "categories": [], "dependencies": [ "bison", "c", "c-ares", "cmake", "cxx", "doxygen", "flex", "git", "glib", "gmake", "gnutls", "krb5", "libgcrypt", "libmaxminddb", "libpcap", "libssh", "libtool", "lua", "nghttp2", "ninja", "pkgconfig", "qt" ], "downloads": [ "https://www.wireshark.org/download/src/all-versions/wireshark-3.2.1.tar.xz", "https://www.wireshark.org/download/src/all-versions/wireshark-3.2.0.tar.xz", "https://www.wireshark.org/download/src/all-versions/wireshark-3.1.0.tar.xz", "https://www.wireshark.org/download/src/all-versions/wireshark-3.0.8.tar.xz", "https://www.wireshark.org/download/src/all-versions/wireshark-2.6.0.tar.xz" ], "homepages": [ "https://www.wireshark.org" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "wireshark", "patches": [], "summary": "Graphical network analyzer and capture tool\n", "version": [ { "downloads": [ "https://www.wireshark.org/download/src/all-versions/wireshark-2.6.0.tar.xz" ], "version": "2.6.0" }, { "downloads": [ "https://www.wireshark.org/download/src/all-versions/wireshark-3.0.8.tar.xz" ], "version": "3.0.8" }, { "downloads": [ "https://www.wireshark.org/download/src/all-versions/wireshark-3.1.0.tar.xz" ], "version": "3.1.0" }, { "downloads": [ "https://www.wireshark.org/download/src/all-versions/wireshark-3.2.0.tar.xz" ], "version": "3.2.0" }, { "downloads": [ "https://www.wireshark.org/download/src/all-versions/wireshark-3.2.1.tar.xz" ], "version": "3.2.1" } ] }, "wise2": { "alias": [], "categories": [], "dependencies": [ "gettext", "glib", "gmake", "libiconv", "pcre2" ], "downloads": [ "https://www.ebi.ac.uk/~birney/wise2/wise2.4.1.tar.gz" ], "homepages": [ "https://www.ebi.ac.uk/~birney/wise2/" ], "licenses": [], "maintainers": [ "snehring" ], "name": "wise2", "patches": [], "summary": "The Wise2 package is now a rather stately bioinformatics package that\nhas be around for a while. Its key programs are genewise, a program for\naligning proteins or protein HMMs to DNA, and dynamite a rather cranky\n\"macro language\" which automates the production of dynamic programming.\n", "version": [ { "downloads": [ "https://www.ebi.ac.uk/~birney/wise2/wise2.4.1.tar.gz" ], "version": "2.4.1" } ] }, "wonton": { "alias": [], "categories": [], "dependencies": [ "blas", "boost", "c", "cmake", "cuda", "cxx", "flecsi", "fortran", "gmake", "jali", "kokkos", "lapack", "mpi", "ninja", "thrust" ], "downloads": [ "https://github.com/laristra/wonton/releases/download/1.3.2/wonton-1.3.2.tar.gz", "https://github.com/laristra/wonton/releases/download/1.2.11/wonton-1.2.11.tar.gz", "https://github.com/laristra/wonton/releases/download/1.2.10/wonton-1.2.10.tar.gz", "https://github.com/laristra/wonton/releases/download/1.2.1/wonton-1.2.1.tar.gz", "https://github.com/laristra/wonton.git" ], "homepages": [ "https://portage.lanl.gov" ], "licenses": [ "BitTorrent-1.0" ], "maintainers": [ "raovgarimella" ], "name": "wonton", "patches": [ "fix-cmake-config.patch when @1.2.0:1.3.3", "fix-cmake-config-r3d.patch when @1.3.0:1.3.3" ], "summary": "Wonton is a support package for the Portage\n(https://github.com/laristra/portage) and Tangram\n(https://github.com/laristra/tangram) libraries. It contains some\nmesh/state classes, wrappers for other mesh/state libraries and some\nutilities required by Portage and Tangram.\n", "version": [ { "downloads": [ "https://github.com/laristra/wonton/releases/download/1.2.1/wonton-1.2.1.tar.gz" ], "version": "1.2.1" }, { "downloads": [ "https://github.com/laristra/wonton/releases/download/1.2.10/wonton-1.2.10.tar.gz" ], "version": "1.2.10" }, { "downloads": [ "https://github.com/laristra/wonton/releases/download/1.2.11/wonton-1.2.11.tar.gz" ], "version": "1.2.11" }, { "downloads": [ "https://github.com/laristra/wonton/releases/download/1.3.2/wonton-1.3.2.tar.gz" ], "version": "1.3.2" } ] }, "wordnet": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "tcl", "tk" ], "downloads": [ "https://wordnetcode.princeton.edu/3.0/WordNet-3.0.tar.gz" ], "homepages": [ "https://wordnet.princeton.edu/" ], "licenses": [], "maintainers": [], "name": "wordnet", "patches": [], "summary": "WordNet is a large lexical database of English. Nouns, verbs, adjectives\nand adverbs are grouped into sets of cognitive synonyms (synsets), each\nexpressing a distinct concept.\n", "version": [ { "downloads": [ "https://wordnetcode.princeton.edu/3.0/WordNet-3.0.tar.gz" ], "version": "3.0" } ] }, "wps": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "fortran", "jasper", "libtool", "m4", "mpi", "netcdf-c", "netcdf-fortran", "tcsh", "time", "wrf" ], "downloads": [ "https://github.com/wrf-model/WPS/archive/v4.5.tar.gz", "https://github.com/wrf-model/WPS/archive/v4.4.tar.gz", "https://github.com/wrf-model/WPS/archive/v4.3.1.tar.gz", "https://github.com/wrf-model/WPS/archive/v4.3.tar.gz", "https://github.com/wrf-model/WPS/archive/v4.2.tar.gz" ], "homepages": [ "https://www.mmm.ucar.edu/weather-research-and-forecasting-model" ], "licenses": [], "maintainers": [ "MichaelLaufer" ], "name": "wps", "patches": [ "patches/4.2/arch.Config.pl.patch when @4.2:", "patches/4.2/preamble.patch when @4.2:", "patches/4.2/arch.configure.defaults.patch when @4.2", "patches/4.2/configure.patch when @4.2:4.3.1", "patches/4.3/arch.configure.defaults.patch when @=4.3", "patches/4.3.1/arch.configure.defaults.patch when @4.3.1", "patches/4.4/configure.patch when @4.4:", "for_aarch64.patch when target=aarch64:" ], "summary": "The Weather Research and Forecasting Pre-Processing System (WPS)\n", "version": [ { "downloads": [ "https://github.com/wrf-model/WPS/archive/v4.2.tar.gz" ], "version": "4.2" }, { "downloads": [ "https://github.com/wrf-model/WPS/archive/v4.3.tar.gz" ], "version": "4.3" }, { "downloads": [ "https://github.com/wrf-model/WPS/archive/v4.3.1.tar.gz" ], "version": "4.3.1" }, { "downloads": [ "https://github.com/wrf-model/WPS/archive/v4.4.tar.gz" ], "version": "4.4" }, { "downloads": [ "https://github.com/wrf-model/WPS/archive/v4.5.tar.gz" ], "version": "4.5" } ] }, "wrf": { "alias": [], "categories": [ "windows" ], "dependencies": [ "adios2", "c", "fortran", "hdf5", "jasper", "jemalloc", "libpng", "libtirpc", "libtool", "m4", "mpi", "netcdf-c", "netcdf-fortran", "parallel-netcdf", "perl", "pkgconfig", "tcsh", "time", "zlib-api" ], "downloads": [ "https://github.com/wrf-model/WRF/releases/download/v4.6.1/v4.6.1.tar.gz", "https://github.com/wrf-model/WRF/releases/download/v4.6.0/v4.6.0.tar.gz", "https://github.com/wrf-model/WRF/releases/download/v4.5.2/v4.5.2.tar.gz", "https://github.com/wrf-model/WRF/releases/download/v4.5.1/v4.5.1.tar.gz", "https://github.com/wrf-model/WRF/releases/download/v4.5/v4.5.tar.gz", "https://github.com/wrf-model/WRF/releases/download/v4.4.2/v4.4.2.tar.gz", "https://github.com/wrf-model/WRF/releases/download/v4.4/v4.4.tar.gz", "https://github.com/wrf-model/WRF/archive/v4.3.3.tar.gz", "https://github.com/wrf-model/WRF/archive/v4.3.2.tar.gz", "https://github.com/wrf-model/WRF/archive/v4.3.1.tar.gz", "https://github.com/wrf-model/WRF/archive/v4.2.2.tar.gz", "https://github.com/wrf-model/WRF/archive/v4.2.tar.gz", "https://github.com/wrf-model/WRF/archive/v4.0.tar.gz", "https://github.com/wrf-model/WRF/archive/V3.9.1.1.tar.gz" ], "homepages": [ "https://www.mmm.ucar.edu/weather-research-and-forecasting-model" ], "licenses": [], "maintainers": [ "MichaelLaufer", "ptooley" ], "name": "wrf", "patches": [ "patches/3.9/netcdf_backport.patch when @3.9.1.1", "patches/3.9/tirpc_detect.patch when @3.9.1.1", "patches/3.9/add_aarch64.patch when @3.9.1.1", "patches/3.9/configure_aocc_2.3.patch when @3.9.1.1 %aocc@:2.4.0", "patches/3.9/configure_aocc_3.0.patch when @3.9.1.1 %aocc@3.0.0", "patches/3.9/configure_aocc_3.1.patch when @3.9.1.1 %aocc@3.1.0", "patches/3.9/fujitsu.patch when @3.9.1.1 %fj", "patches/4.0/arch.Config.pl.patch when @4.0", "patches/4.0/arch.configure.defaults.patch when @4.0", "patches/4.0/arch.conf_tokens.patch when @4.0", "patches/4.0/arch.postamble.patch when @4.0", "patches/4.0/configure.patch when @4.0", "patches/4.0/external.io_netcdf.makefile.patch when @4.0", "patches/4.0/Makefile.patch when @4.0", "patches/4.0/tirpc_detect.patch when @4.0", "patches/4.0/add_aarch64.patch when @4.0", "patches/4.2/arch.Config.pl.patch when @4.2:4.5.1", "patches/4.2/external.io_netcdf.makefile.patch when @4.2:4.5.1", "patches/4.2/arch.configure.defaults.patch when @=4.2", "patches/4.2/4.2.2_arch.configure.defaults.patch when @4.2.2", "patches/4.2/arch.conf_tokens.patch when @4.2:", "patches/4.2/var.gen_be.Makefile.patch when @4.2:", "patches/4.2/arch.postamble.patch when @4.2", "patches/4.2/Makefile.patch when @4.2", "patches/4.2/tirpc_detect.patch when @4.2", "patches/4.2/configure.patch when @4.2:4.3.3", "patches/4.2/add_aarch64.patch when @4.2:4.3.1 target=aarch64: %gcc", "patches/4.2/add_aarch64_acfl.patch when @4.2:4.3.1 target=aarch64: %arm", "patches/4.2/configure_aocc_2.3.patch when @4.2 %aocc@:2.4.0", "patches/4.2/configure_aocc_3.0.patch when @4.2 %aocc@3.0.0:3.2.0", "patches/4.2/hdf5_fix.patch when @4.2:4.5.1 %aocc", "patches/4.2/derf_fix.patch when @=4.2 %aocc", "patches/4.2/add_tools_flags_acfl2304.patch when @4.2:4.4.2 target=aarch64: %arm@23.04.1:", "patches/4.3/add_aarch64.patch when @4.3.2:4.4.2 target=aarch64: %gcc", "patches/4.3/add_aarch64_acfl.patch when @4.3.2:4.4.2 target=aarch64: %arm", "patches/4.4/arch.postamble.patch when @4.4:4.5.1", "patches/4.4/configure.patch when @4.4:4.4.2", "patches/4.4/ifx.patch when @4.4: %oneapi", "patches/4.5/configure.patch when @4.5:", "patches/4.5/adios2-remove-deprecated-functions.patch when @=4.5.0 ^adios2@2.9:", "https://github.com/wrf-model/WRF/commit/6502d5d9c15f5f9a652dec244cc12434af737c3c.patch?full_index=1 when @4.2 %fj", "patches/4.2/configure_fujitsu.patch when @4 %fj", "patches/4.3/Makefile.patch when @4.3:4.5.1", "patches/4.3/arch.postamble.patch when @4.3:4.3.3", "patches/4.3/fujitsu.patch when @4.3:4.4 %fj", "https://github.com/wrf-model/WRF/commit/7c6fd575b7a8fe5715b07b38db160e606c302956.patch?full_index=1 when @4.3.1", "https://github.com/wrf-model/WRF/commit/238a7d219b7c8e285db28fe4f0c96ebe5068d91c.patch?full_index=1 when @4.3.1", "https://github.com/wrf-model/WRF/commit/4a084e03575da65f254917ef5d8eb39074abd3fc.patch?full_index=1 when @4.5: %arm", "https://github.com/wrf-model/WRF/commit/6087d9192f7f91967147e50f5bc8b9e49310cf98.patch?full_index=1 when @4.5: %arm" ], "summary": "The Weather Research and Forecasting (WRF) Model is a next-generation\nmesoscale numerical weather prediction system designed for both\natmospheric research and operational forecasting applications.\n", "version": [ { "downloads": [ "https://github.com/wrf-model/WRF/archive/V3.9.1.1.tar.gz" ], "version": "3.9.1.1" }, { "downloads": [ "https://github.com/wrf-model/WRF/archive/v4.0.tar.gz" ], "version": "4.0" }, { "downloads": [ "https://github.com/wrf-model/WRF/archive/v4.2.tar.gz" ], "version": "4.2" }, { "downloads": [ "https://github.com/wrf-model/WRF/archive/v4.2.2.tar.gz" ], "version": "4.2.2" }, { "downloads": [ 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Wt is a C++ library for developing web\napplications.\n", "version": [ { "downloads": [ "https://github.com/emweb/wt/archive/3.3.7.tar.gz" ], "version": "3.3.7" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/emweb/wt.git" } ], "version": "master" } ] }, "wtdbg2": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "sse2neon", "zlib-api" ], "downloads": [ "https://github.com/ruanjue/wtdbg2/archive/v2.5.tar.gz", "https://github.com/ruanjue/wtdbg2/archive/v2.3.tar.gz" ], "homepages": [ "https://github.com/ruanjue/wtdbg2" ], "licenses": [ "GPL-3.0-only" ], "maintainers": [], "name": "wtdbg2", "patches": [ "for_aarch64.patch when target=aarch64:" ], "summary": "A fuzzy Bruijn graph approach to long noisy reads assembly\n", "version": [ { "downloads": [ "https://github.com/ruanjue/wtdbg2/archive/v2.3.tar.gz" ], "version": "2.3" }, { "downloads": [ "https://github.com/ruanjue/wtdbg2/archive/v2.5.tar.gz" ], "version": "2.5" } ] }, "wxparaver": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "cxx", "gmake", "gnuconfig", "libxml2", "wxpropgrid", "wxwidgets", "zlib-api" ], "downloads": [ "https://ftp.tools.bsc.es/wxparaver/wxparaver-4.9.2-src.tar.bz2", "https://ftp.tools.bsc.es/wxparaver/wxparaver-4.9.1-src.tar.bz2", "https://ftp.tools.bsc.es/wxparaver/wxparaver-4.9.0-src.tar.bz2", "https://ftp.tools.bsc.es/wxparaver/wxparaver-4.8.2-src.tar.bz2", "https://ftp.tools.bsc.es/wxparaver/wxparaver-4.8.1-src.tar.bz2", "https://ftp.tools.bsc.es/wxparaver/wxparaver-4.8.0-src.tar.bz2", "https://ftp.tools.bsc.es/wxparaver/wxparaver-4.7.2-src.tar.bz2", "https://ftp.tools.bsc.es/wxparaver/wxparaver-4.7.1-src.tar.bz2", "https://ftp.tools.bsc.es/wxparaver/wxparaver-4.7.0-src.tar.bz2" ], "homepages": [ "https://tools.bsc.es/paraver" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "wxparaver", "patches": [], "summary": " \"A very powerful performance visualization and analysis tool based on\ntraces that can be used to analyse any information that is expressed on\nits input trace format. Traces for parallel MPI, OpenMP and other\nprograms can be genereated with Extrae.\n", "version": [ { "downloads": [ "https://ftp.tools.bsc.es/wxparaver/wxparaver-4.7.0-src.tar.bz2" ], "version": "4.7.0" }, { "downloads": [ "https://ftp.tools.bsc.es/wxparaver/wxparaver-4.7.1-src.tar.bz2" ], "version": "4.7.1" }, { "downloads": [ "https://ftp.tools.bsc.es/wxparaver/wxparaver-4.7.2-src.tar.bz2" ], "version": "4.7.2" }, { "downloads": [ "https://ftp.tools.bsc.es/wxparaver/wxparaver-4.8.0-src.tar.bz2" ], "version": "4.8.0" }, { "downloads": [ "https://ftp.tools.bsc.es/wxparaver/wxparaver-4.8.1-src.tar.bz2" ], "version": "4.8.1" }, { "downloads": [ "https://ftp.tools.bsc.es/wxparaver/wxparaver-4.8.2-src.tar.bz2" ], "version": "4.8.2" }, { "downloads": [ "https://ftp.tools.bsc.es/wxparaver/wxparaver-4.9.0-src.tar.bz2" ], "version": "4.9.0" }, { "downloads": [ "https://ftp.tools.bsc.es/wxparaver/wxparaver-4.9.1-src.tar.bz2" ], "version": "4.9.1" }, { "downloads": [ "https://ftp.tools.bsc.es/wxparaver/wxparaver-4.9.2-src.tar.bz2" ], "version": "4.9.2" } ] }, "wxpropgrid": { "alias": [], "categories": [], "dependencies": [ "cxx", "gmake", "wxwidgets" ], "downloads": [ "https://prdownloads.sourceforge.net/wxpropgrid/wxpropgrid-1.4.15-src.tar.gz" ], "homepages": [ "https://wxpropgrid.sourceforge.net/" ], "licenses": [], "maintainers": [], "name": "wxpropgrid", "patches": [], "summary": "wxPropertyGrid is a property sheet control for wxWidgets. In other\nwords, it is a specialized two-column grid for editing properties such\nas strings, numbers, flagsets, string arrays, and colours.\n", "version": [ { "downloads": [ "https://prdownloads.sourceforge.net/wxpropgrid/wxpropgrid-1.4.15-src.tar.gz" ], "version": "1.4.15" } ] }, "wxwidgets": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gnuconfig", "gtkplus", "mesa-glu", "pkgconfig" ], "downloads": [ "https://github.com/wxWidgets/wxWidgets/releases/download/vdevelop/wxWidgets-develop.tar.bz2", "https://github.com/wxWidgets/wxWidgets/releases/download/v3.2.7/wxWidgets-3.2.7.tar.bz2", "https://github.com/wxWidgets/wxWidgets/releases/download/v3.2.6/wxWidgets-3.2.6.tar.bz2", "https://github.com/wxWidgets/wxWidgets/releases/download/v3.2.5/wxWidgets-3.2.5.tar.bz2", "https://github.com/wxWidgets/wxWidgets/releases/download/v3.2.4/wxWidgets-3.2.4.tar.bz2", "https://github.com/wxWidgets/wxWidgets/releases/download/v3.2.2.1/wxWidgets-3.2.2.1.tar.bz2", "https://github.com/wxWidgets/wxWidgets/releases/download/v3.2.2/wxWidgets-3.2.2.tar.bz2", "https://github.com/wxWidgets/wxWidgets/releases/download/v3.1.0/wxWidgets-3.1.0.tar.bz2", "https://github.com/wxWidgets/wxWidgets/releases/download/v3.0.2/wxWidgets-3.0.2.tar.bz2", "https://github.com/wxWidgets/wxWidgets/releases/download/v3.0.1/wxWidgets-3.0.1.tar.bz2", "https://github.com/wxWidgets/wxWidgets.git" ], "homepages": [ "https://www.wxwidgets.org/" ], "licenses": [], "maintainers": [], "name": "wxwidgets", "patches": [ "math_include.patch when @3.0.1:3.0.2" ], "summary": "wxWidgets is a C++ library that lets developers create applications for\nWindows, Mac OS X, Linux and other platforms with a single code base. 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These experimental libraries provide convenience functions\nand interfaces which make the raw X protocol more usable. Some of the\nlibraries also provide client-side code which is not strictly part of\nthe X protocol but which have traditionally been provided by Xlib.\n", "version": [ { "downloads": [ "https://xcb.freedesktop.org/dist/xcb-util-0.4.0.tar.gz" ], "version": "0.4.0" }, { "downloads": [ "https://www.x.org/archive/individual/lib/xcb-util-0.4.1.tar.xz" ], "version": "0.4.1" } ] }, "xcb-util-cursor": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libxcb", "m4", "pkgconfig", "xcb-util-image", "xcb-util-renderutil" ], "downloads": [ "https://www.x.org/archive/individual/lib/xcb-util-cursor-0.1.5.tar.xz", "https://www.x.org/archive/individual/lib/xcb-util-cursor-0.1.4.tar.xz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libxcb-cursor" ], "licenses": [ "MIT" ], "maintainers": [ "wdconinc" ], "name": "xcb-util-cursor", "patches": [], "summary": "The XCB util modules provides a number of libraries which sit on top of\nlibxcb, the core X protocol library, and some of the extension\nlibraries. These experimental libraries provide convenience functions\nand interfaces which make the raw X protocol more usable. Some of the\nlibraries also provide client-side code which is not strictly part of\nthe X protocol but which have traditionally been provided by Xlib.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/xcb-util-cursor-0.1.4.tar.xz" ], "version": "0.1.4" }, { "downloads": [ "https://www.x.org/archive/individual/lib/xcb-util-cursor-0.1.5.tar.xz" ], "version": "0.1.5" } ] }, "xcb-util-errors": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libxcb", "pkgconfig", "xcb-proto" ], "downloads": [ "https://www.x.org/archive/individual/lib/xcb-util-errors-1.0.1.tar.xz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libxcb-errors" ], "licenses": [], "maintainers": [], "name": "xcb-util-errors", "patches": [], "summary": "The XCB util modules provides a number of libraries which sit on top of\nlibxcb, the core X protocol library, and some of the extension\nlibraries. These experimental libraries provide convenience functions\nand interfaces which make the raw X protocol more usable. Some of the\nlibraries also provide client-side code which is not strictly part of\nthe X protocol but which have traditionally been provided by Xlib.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/xcb-util-errors-1.0.1.tar.xz" ], "version": "1.0.1" } ] }, "xcb-util-image": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libxcb", "pkgconfig", "xcb-util", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/xcb-util-image-0.4.1.tar.xz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libxcb-image" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xcb-util-image", "patches": [], "summary": "The XCB util modules provides a number of libraries which sit on top of\nlibxcb, the core X protocol library, and some of the extension\nlibraries. These experimental libraries provide convenience functions\nand interfaces which make the raw X protocol more usable. Some of the\nlibraries also provide client-side code which is not strictly part of\nthe X protocol but which have traditionally been provided by Xlib.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/xcb-util-image-0.4.1.tar.xz" ], "version": "0.4.1" } ] }, "xcb-util-keysyms": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libxcb", "pkgconfig", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/lib/xcb-util-keysyms-0.4.1.tar.xz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libxcb-keysyms" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xcb-util-keysyms", "patches": [], "summary": "The XCB util modules provides a number of libraries which sit on top of\nlibxcb, the core X protocol library, and some of the extension\nlibraries. These experimental libraries provide convenience functions\nand interfaces which make the raw X protocol more usable. Some of the\nlibraries also provide client-side code which is not strictly part of\nthe X protocol but which have traditionally been provided by Xlib.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/xcb-util-keysyms-0.4.1.tar.xz" ], "version": "0.4.1" } ] }, "xcb-util-renderutil": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libxcb", "pkgconfig" ], "downloads": [ "https://www.x.org/archive/individual/lib/xcb-util-renderutil-0.3.10.tar.xz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libxcb-renderutil" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xcb-util-renderutil", "patches": [], "summary": "The XCB util modules provides a number of libraries which sit on top of\nlibxcb, the core X protocol library, and some of the extension\nlibraries. These experimental libraries provide convenience functions\nand interfaces which make the raw X protocol more usable. Some of the\nlibraries also provide client-side code which is not strictly part of\nthe X protocol but which have traditionally been provided by Xlib.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/xcb-util-renderutil-0.3.10.tar.xz" ], "version": "0.3.10" } ] }, "xcb-util-wm": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libxcb", "m4", "pkgconfig" ], "downloads": [ "https://www.x.org/archive/individual/lib/xcb-util-wm-0.4.2.tar.xz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/lib/libxcb-wm" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xcb-util-wm", "patches": [], "summary": "The XCB util modules provides a number of libraries which sit on top of\nlibxcb, the core X protocol library, and some of the extension\nlibraries. These experimental libraries provide convenience functions\nand interfaces which make the raw X protocol more usable. Some of the\nlibraries also provide client-side code which is not strictly part of\nthe X protocol but which have traditionally been provided by Xlib.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/xcb-util-wm-0.4.2.tar.xz" ], "version": "0.4.2" } ] }, "xcb-util-xrm": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "libxcb", "m4", "pkgconfig" ], "downloads": [ "https://github.com/Airblader/xcb-util-xrm.git" ], "homepages": [ "https://github.com/Airblader/xcb-util-xrm" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xcb-util-xrm", "patches": [], "summary": "XCB util-xrm module provides the 'xrm' library, i.e. utility functions\nfor the X resource manager.\n", "version": [ { "repositories": [ { "commit": "a45b3d0bbaa94bf8a68405ab8c5c61404da464ce", "type": "git", "url": "https://github.com/Airblader/xcb-util-xrm.git" } ], "version": "1.2" } ] }, "xcdf": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "gmake", "ninja", "py-pybind11", "python" ], "downloads": [ "https://github.com/jimbraun/XCDF/archive/refs/tags/v3.01.tar.gz", "https://github.com/jimbraun/XCDF/archive/refs/tags/v3.00.03.tar.gz" ], "homepages": [ "https://github.com/jimbraun/XCDF" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "xcdf", "patches": [ "remove_python_support.patch when @3.00.03" ], "summary": "Binary data format designed to store data fields with user-specified\naccuracy.\n", "version": [ { "downloads": [ "https://github.com/jimbraun/XCDF/archive/refs/tags/v3.00.03.tar.gz" ], "version": "3.00.03" }, { "downloads": [ "https://github.com/jimbraun/XCDF/archive/refs/tags/v3.01.tar.gz" ], "version": "3.01" } ] }, "xcfun": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cxx", "fortran", "gmake", "ninja", "py-numpy", "py-pybind11", "python", "python-venv" ], "downloads": [ "https://github.com/dftlibs/xcfun/archive/v2.1.1.tar.gz", "https://github.com/dftlibs/xcfun/archive/v2.1.0.tar.gz", "https://github.com/dftlibs/xcfun/archive/v2.0.2.tar.gz", "https://github.com/dftlibs/xcfun/archive/v2.0.1.tar.gz", "https://github.com/dftlibs/xcfun/archive/v2.0.0.tar.gz" ], "homepages": [ "https://github.com/dftlibs/xcfun" ], "licenses": [ "MPL-2.0-no-copyleft-exception" ], "maintainers": [ "bast", "robertodr" ], "name": "xcfun", "patches": [], "summary": "Exchange-Correlation functionals with arbitrary order derivatives.\n", "version": [ { "downloads": [ "https://github.com/dftlibs/xcfun/archive/v2.0.0.tar.gz" ], "version": "2.0.0" }, { "downloads": [ "https://github.com/dftlibs/xcfun/archive/v2.0.1.tar.gz" ], "version": "2.0.1" }, { "downloads": [ "https://github.com/dftlibs/xcfun/archive/v2.0.2.tar.gz" ], "version": "2.0.2" }, { "downloads": [ "https://github.com/dftlibs/xcfun/archive/v2.1.0.tar.gz" ], "version": "2.1.0" }, { "downloads": [ "https://github.com/dftlibs/xcfun/archive/v2.1.1.tar.gz" ], "version": "2.1.1" } ] }, "xclip": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "gmake", "gnuconfig", "libtool", "libx11", "libxmu", "m4" ], "downloads": [ "https://github.com/astrand/xclip.git" ], "homepages": [ "https://github.com/astrand/xclip" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [], "name": "xclip", "patches": [], "summary": "xclip is a command line utility that is designed to run on any system\nwith an X11 implementation. It provides an interface to X selections\n(\"the clipboard\") from the command line. It can read data from standard\nin or a file and place it in an X selection for pasting into other X\napplications. xclip can also print an X selection to standard out, which\ncan then be redirected to a file or another program.\n", "version": [ { "repositories": [ { "commit": "9aa7090c3b8b437c6489edca32ae43d82e0c1281", "type": "git", "url": "https://github.com/astrand/xclip.git" } ], "version": "0.13" } ] }, "xclipboard": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxaw", "libxkbfile", "libxmu", "libxt", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xclipboard-1.1.4.tar.gz", "https://www.x.org/archive/individual/app/xclipboard-1.1.3.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xclipboard" ], "licenses": [], "maintainers": [], "name": "xclipboard", "patches": [], "summary": "xclipboard is used to collect and display text selections that are sent\nto the CLIPBOARD by other clients. It is typically used to save\nCLIPBOARD selections for later use. It stores each CLIPBOARD selection\nas a separate string, each of which can be selected.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xclipboard-1.1.3.tar.gz" ], "version": "1.1.3" }, { "downloads": [ "https://www.x.org/archive/individual/app/xclipboard-1.1.4.tar.gz" ], "version": "1.1.4" } ] }, "xclock": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxaw", "libxft", "libxkbfile", "libxmu", "libxrender", "libxt", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xclock-1.1.1.tar.gz", "https://www.x.org/archive/individual/app/xclock-1.1.0.tar.gz", "https://www.x.org/archive/individual/app/xclock-1.0.9.tar.gz", "https://www.x.org/archive/individual/app/xclock-1.0.8.tar.gz", "https://www.x.org/archive/individual/app/xclock-1.0.7.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xclock" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xclock", "patches": [], "summary": "xclock is the classic X Window System clock utility. It displays the\ntime in analog or digital form, continuously updated at a frequency\nwhich may be specified by the user.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xclock-1.0.7.tar.gz" ], "version": "1.0.7" }, { "downloads": [ "https://www.x.org/archive/individual/app/xclock-1.0.8.tar.gz" ], "version": "1.0.8" }, { "downloads": [ "https://www.x.org/archive/individual/app/xclock-1.0.9.tar.gz" ], "version": "1.0.9" }, { "downloads": [ "https://www.x.org/archive/individual/app/xclock-1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://www.x.org/archive/individual/app/xclock-1.1.1.tar.gz" ], "version": "1.1.1" } ] }, "xcmiscproto": { "alias": [], "categories": [], "dependencies": [ "gmake", "gnuconfig", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/proto/xcmiscproto-1.2.2.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/proto/xcmiscproto" ], "licenses": [], "maintainers": [], "name": "xcmiscproto", "patches": [], "summary": "XC-MISC Extension. This extension defines a protocol that provides Xlib\ntwo ways to query the server for available resource IDs.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/proto/xcmiscproto-1.2.2.tar.gz" ], "version": "1.2.2" } ] }, "xcmsdb": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/app/xcmsdb-1.0.6.tar.gz", "https://www.x.org/archive/individual/app/xcmsdb-1.0.5.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xcmsdb" ], "licenses": [ "custom" ], "maintainers": [], "name": "xcmsdb", "patches": [], "summary": "xcmsdb is used to load, query, or remove Device Color Characterization\ndata stored in properties on the root window of the screen as specified\nin section 7, Device Color Characterization, of the X11 Inter-Client\nCommunication Conventions Manual (ICCCM).\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xcmsdb-1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://www.x.org/archive/individual/app/xcmsdb-1.0.6.tar.gz" ], "version": "1.0.6" } ] }, "xcompmgr": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libxcomposite", "libxdamage", "libxext", "libxfixes", "libxrender", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/app/xcompmgr-1.1.9.tar.gz", "https://www.x.org/archive/individual/app/xcompmgr-1.1.8.tar.gz", "https://www.x.org/archive/individual/app/xcompmgr-1.1.7.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xcompmgr" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xcompmgr", "patches": [], "summary": "xcompmgr is a sample compositing manager for X servers supporting the\nXFIXES, DAMAGE, RENDER, and COMPOSITE extensions. It enables basic eye-\ncandy effects.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xcompmgr-1.1.7.tar.gz" ], "version": "1.1.7" }, { "downloads": [ "https://www.x.org/archive/individual/app/xcompmgr-1.1.8.tar.gz" ], "version": "1.1.8" }, { "downloads": [ "https://www.x.org/archive/individual/app/xcompmgr-1.1.9.tar.gz" ], "version": "1.1.9" } ] }, "xconsole": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxaw", "libxmu", "libxt", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xconsole-1.1.0.tar.gz", "https://www.x.org/archive/individual/app/xconsole-1.0.8.tar.gz", "https://www.x.org/archive/individual/app/xconsole-1.0.7.tar.gz", "https://www.x.org/archive/individual/app/xconsole-1.0.6.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xconsole" ], "licenses": [], "maintainers": [], "name": "xconsole", "patches": [], "summary": "xconsole displays in a X11 window the messages which are usually sent to\n/dev/console.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xconsole-1.0.6.tar.gz" ], "version": "1.0.6" }, { "downloads": [ "https://www.x.org/archive/individual/app/xconsole-1.0.7.tar.gz" ], "version": "1.0.7" }, { "downloads": [ "https://www.x.org/archive/individual/app/xconsole-1.0.8.tar.gz" ], "version": "1.0.8" }, { "downloads": [ "https://www.x.org/archive/individual/app/xconsole-1.1.0.tar.gz" ], "version": "1.1.0" } ] }, "xcrysden": { "alias": [], "categories": [], "dependencies": [ "c", "fftw", "fortran", "gmake", "libx11", "libxmu", "mesa", "mesa-glu", "tcl", "tcl-bwidget", "tcl-togl", "tk" ], "downloads": [ "http://www.xcrysden.org/download/xcrysden-1.6.3-rc2.tar.gz", "http://www.xcrysden.org/download/xcrysden-1.6.2.tar.gz", "http://www.xcrysden.org/download/xcrysden-1.6.1.tar.gz", "http://www.xcrysden.org/download/xcrysden-1.6.0.tar.gz" ], "homepages": [ "http://www.xcrysden.org/XCrySDen.html" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [ "gjsd2" ], "name": "xcrysden", "patches": [], "summary": "XCrySDen is a crystalline and molecular structure visualisation program\naiming at display of isosurfaces and contours, which can be superimposed\non crystalline structures and interactively rotated and manipulated.\n", "version": [ { "downloads": [ "http://www.xcrysden.org/download/xcrysden-1.6.0.tar.gz" ], "version": "1.6.0" }, { "downloads": [ "http://www.xcrysden.org/download/xcrysden-1.6.1.tar.gz" ], "version": "1.6.1" }, { "downloads": [ "http://www.xcrysden.org/download/xcrysden-1.6.2.tar.gz" ], "version": "1.6.2" }, { "downloads": [ "http://www.xcrysden.org/download/xcrysden-1.6.3-rc2.tar.gz" ], "version": "1.6.3-rc2" } ] }, "xcursor-themes": { "alias": [], "categories": [], "dependencies": [ "gmake", "libxcursor", "pkgconfig", "util-macros", "xcursorgen" ], "downloads": [ "https://www.x.org/archive/individual/data/xcursor-themes-1.0.7.tar.gz", "https://www.x.org/archive/individual/data/xcursor-themes-1.0.6.tar.gz", "https://www.x.org/archive/individual/data/xcursor-themes-1.0.5.tar.gz", "https://www.x.org/archive/individual/data/xcursor-themes-1.0.4.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/data/cursors" ], "licenses": [], "maintainers": [], "name": "xcursor-themes", "patches": [], "summary": "This is a default set of cursor themes for use with libXcursor,\noriginally created for the XFree86 Project, and now shipped as part of\nthe X.Org software distribution.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/data/xcursor-themes-1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://www.x.org/archive/individual/data/xcursor-themes-1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://www.x.org/archive/individual/data/xcursor-themes-1.0.6.tar.gz" ], "version": "1.0.6" }, { "downloads": [ "https://www.x.org/archive/individual/data/xcursor-themes-1.0.7.tar.gz" ], "version": "1.0.7" } ] }, "xcursorgen": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libpng", "libx11", "libxcursor", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/app/xcursorgen-1.0.8.tar.gz", "https://www.x.org/archive/individual/app/xcursorgen-1.0.7.tar.gz", "https://www.x.org/archive/individual/app/xcursorgen-1.0.6.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xcursorgen" ], "licenses": [], "maintainers": [], "name": "xcursorgen", "patches": [], "summary": "xcursorgen prepares X11 cursor sets for use with libXcursor.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xcursorgen-1.0.6.tar.gz" ], "version": "1.0.6" }, { "downloads": [ "https://www.x.org/archive/individual/app/xcursorgen-1.0.7.tar.gz" ], "version": "1.0.7" }, { "downloads": [ "https://www.x.org/archive/individual/app/xcursorgen-1.0.8.tar.gz" ], "version": "1.0.8" } ] }, "xdbedizzy": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxext", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/app/xdbedizzy-1.1.0.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xdbedizzy" ], "licenses": [], "maintainers": [], "name": "xdbedizzy", "patches": [], "summary": "xdbedizzy is a demo of the X11 Double Buffer Extension (DBE) creating a\ndouble buffered spinning scene.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xdbedizzy-1.1.0.tar.gz" ], "version": "1.1.0" } ] }, "xdelta": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "cxx", "gmake", "gnuconfig", "go", "libtool", "m4" ], "downloads": [ "https://github.com/jmacd/xdelta/archive/v3.1.0.tar.gz", "https://github.com/jmacd/xdelta/archive/v3.0.11.tar.gz", "https://github.com/jmacd/xdelta/archive/v3.0.10.tar.gz" ], "homepages": [ "http://xdelta.org/" ], "licenses": [], "maintainers": [], "name": "xdelta", "patches": [], "summary": "Xdelta version 3 is a C library and command-line tool for delta\ncompression using VCDIFF/RFC 3284 streams.\n", "version": [ { "downloads": [ "https://github.com/jmacd/xdelta/archive/v3.0.10.tar.gz" ], "version": "3.0.10" }, { "downloads": [ "https://github.com/jmacd/xdelta/archive/v3.0.11.tar.gz" ], "version": "3.0.11" }, { "downloads": [ "https://github.com/jmacd/xdelta/archive/v3.1.0.tar.gz" ], "version": "3.1.0" } ] }, "xditview": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxaw", "libxmu", "libxt", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/app/xditview-1.0.6.tar.gz", "https://www.x.org/archive/individual/app/xditview-1.0.5.tar.gz", "https://www.x.org/archive/individual/app/xditview-1.0.4.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xditview" ], "licenses": [ "X11" ], "maintainers": [], "name": "xditview", "patches": [], "summary": "xditview displays ditroff output on an X display.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xditview-1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://www.x.org/archive/individual/app/xditview-1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://www.x.org/archive/individual/app/xditview-1.0.6.tar.gz" ], "version": "1.0.6" } ] }, "xdm": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxau", "libxaw", "libxdmcp", "libxext", "libxft", "libxinerama", "libxmu", "libxpm", "libxt", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/app/xdm-1.1.16.tar.gz", "https://www.x.org/archive/individual/app/xdm-1.1.14.tar.gz", "https://www.x.org/archive/individual/app/xdm-1.1.13.tar.gz", "https://www.x.org/archive/individual/app/xdm-1.1.12.tar.gz", "https://www.x.org/archive/individual/app/xdm-1.1.11.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xdm" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xdm", "patches": [], "summary": "X Display Manager / XDMCP server.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xdm-1.1.11.tar.gz" ], "version": "1.1.11" }, { "downloads": [ "https://www.x.org/archive/individual/app/xdm-1.1.12.tar.gz" ], "version": "1.1.12" }, { "downloads": [ "https://www.x.org/archive/individual/app/xdm-1.1.13.tar.gz" ], "version": "1.1.13" }, { "downloads": [ "https://www.x.org/archive/individual/app/xdm-1.1.14.tar.gz" ], "version": "1.1.14" }, { "downloads": [ "https://www.x.org/archive/individual/app/xdm-1.1.16.tar.gz" ], "version": "1.1.16" } ] }, "xdmf3": { "alias": [], "categories": [], "dependencies": [ "boost", "c", "cmake", "cxx", "fortran", "gmake", "hdf5", "libxml2", "mpi", "ninja" ], "downloads": [ "https://gitlab.kitware.com/xdmf/xdmf.git" ], "homepages": [ "https://xdmf.org" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "xdmf3", "patches": [ "fix_hdf5_hid_t.diff" ], "summary": "XDMF, or eXtensible Data Model and Format (XDMF), is a common data model\nformat to exchange scientific data between High Performance Computing\ncodes and tools.\n", "version": [ { "repositories": [ { "commit": "8d9c98081d89ac77a132d56bc8bef53581db4078", "type": "git", "url": "https://gitlab.kitware.com/xdmf/xdmf.git" } ], "version": "2019-01-14" } ] }, "xdotool": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "inputproto", "libx11", "libxext", "libxi", "libxinerama", "libxkbcommon", "libxtst" ], "downloads": [ "https://github.com/jordansissel/xdotool/releases/download/v3.20211022.1/xdotool-3.20211022.1.tar.gz", "https://github.com/jordansissel/xdotool/releases/download/v3.20160805.1/xdotool-3.20160805.1.tar.gz", "https://github.com/jordansissel/xdotool/releases/download/v3.20160804.2/xdotool-3.20160804.2.tar.gz", "https://github.com/jordansissel/xdotool/releases/download/v3.20160804.1/xdotool-3.20160804.1.tar.gz", "https://github.com/jordansissel/xdotool/releases/download/v3.20150503.1/xdotool-3.20150503.1.tar.gz" ], "homepages": [ "https://github.com/jordansissel/xdotool" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "xdotool", "patches": [], "summary": "fake keyboard/mouse input, window management, and more\n", "version": [ { "downloads": [ "https://github.com/jordansissel/xdotool/releases/download/v3.20150503.1/xdotool-3.20150503.1.tar.gz" ], "version": "3.20150503.1" }, { "downloads": [ "https://github.com/jordansissel/xdotool/releases/download/v3.20160804.1/xdotool-3.20160804.1.tar.gz" ], "version": "3.20160804.1" }, { "downloads": [ "https://github.com/jordansissel/xdotool/releases/download/v3.20160804.2/xdotool-3.20160804.2.tar.gz" ], "version": "3.20160804.2" }, { "downloads": [ "https://github.com/jordansissel/xdotool/releases/download/v3.20160805.1/xdotool-3.20160805.1.tar.gz" ], "version": "3.20160805.1" }, { "downloads": [ "https://github.com/jordansissel/xdotool/releases/download/v3.20211022.1/xdotool-3.20211022.1.tar.gz" ], "version": "3.20211022.1" } ] }, "xdpyinfo": { "alias": [], "categories": [], "dependencies": [ "c", "fixesproto", "gmake", "gnuconfig", "inputproto", "libx11", "libxcb", "libxext", "libxtst", "pkgconfig", "recordproto", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xdpyinfo-1.3.3.tar.gz", "https://www.x.org/archive/individual/app/xdpyinfo-1.3.2.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xdpyinfo" ], "licenses": [ "custom" ], "maintainers": [], "name": "xdpyinfo", "patches": [], "summary": "xdpyinfo is a utility for displaying information about an X server. It\nis used to examine the capabilities of a server, the predefined values\nfor various parameters used in communicating between clients and the\nserver, and the different types of screens, visuals, and X11 protocol\nextensions that are available.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xdpyinfo-1.3.2.tar.gz" ], "version": "1.3.2" }, { "downloads": [ "https://www.x.org/archive/individual/app/xdpyinfo-1.3.3.tar.gz" ], "version": "1.3.3" } ] }, "xdriinfo": { "alias": [], "categories": [], "dependencies": [ "c", "expat", "gl", "glproto", "gmake", "gnuconfig", "libx11", "libxdamage", "libxext", "libxfixes", "libxshmfence", "pcre", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/app/xdriinfo-1.0.7.tar.gz", "https://www.x.org/archive/individual/app/xdriinfo-1.0.6.tar.gz", "https://www.x.org/archive/individual/app/xdriinfo-1.0.5.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xdriinfo" ], "licenses": [ "custom" ], "maintainers": [], "name": "xdriinfo", "patches": [], "summary": "xdriinfo - query configuration information of X11 DRI drivers.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xdriinfo-1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://www.x.org/archive/individual/app/xdriinfo-1.0.6.tar.gz" ], "version": "1.0.6" }, { "downloads": [ "https://www.x.org/archive/individual/app/xdriinfo-1.0.7.tar.gz" ], "version": "1.0.7" } ] }, "xedit": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxaw", "libxmu", "libxt", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/app/xedit-1.2.3.tar.gz", "https://www.x.org/archive/individual/app/xedit-1.2.2.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xedit" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [], "name": "xedit", "patches": [], "summary": "Xedit is a simple text editor for X.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xedit-1.2.2.tar.gz" ], "version": "1.2.2" }, { "downloads": [ "https://www.x.org/archive/individual/app/xedit-1.2.3.tar.gz" ], "version": "1.2.3" } ] }, "xeniumranger": { "alias": [], "categories": [], "dependencies": [], "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/xeniumranger-1.7.1.tar.gz" ], "homepages": [ "https://www.10xgenomics.com/support/software/xenium-ranger/latest" ], "licenses": [], "maintainers": [], "name": "xeniumranger", "patches": [], "summary": "The Xenium In Situ software suite is a set of software applications for\nanalyzing and visualizing in situ gene expression data produced by the\nXenium Analyzer. Xenium Ranger provides flexible off-instrument\nreanalysis of Xenium In Situ data. This package requires the user to\naccept a license and to download the tarball manually. Once downloaded,\nthe file should be placed within a manual mirror or within the current\ndirectory. For instructions on making a manual mirror, see\nhttps://spack.readthedocs.io/en/latest/mirrors.html\n", "version": [ { "downloads": [ "file:///home/runner/work/packages.spack.io/packages.spack.io/xeniumranger-1.7.1.tar.gz" ], "version": "1.7.1" } ] }, "xerces-c": { "alias": [], "categories": [], "dependencies": [ "c", "curl", "cxx", "gmake", "gnuconfig", "iconv", "icu4c" ], "downloads": [ "https://archive.apache.org/dist/xerces/c/3/sources/xerces-c-3.3.0.tar.bz2", "https://archive.apache.org/dist/xerces/c/3/sources/xerces-c-3.2.5.tar.bz2" ], "homepages": [ "https://xerces.apache.org/xerces-c" ], "licenses": [ "Apache-2.0" ], "maintainers": [], "name": "xerces-c", "patches": [], "summary": "Xerces-C++ is a validating XML parser written in a portable subset of\nC++. Xerces-C++ makes it easy to give your application the ability to\nread and write XML data. A shared library is provided for parsing,\ngenerating, manipulating, and validating XML documents using the DOM,\nSAX, and SAX2 APIs.\n", "version": [ { "downloads": [ "https://archive.apache.org/dist/xerces/c/3/sources/xerces-c-3.2.5.tar.bz2" ], "version": "3.2.5" }, { "downloads": [ "https://archive.apache.org/dist/xerces/c/3/sources/xerces-c-3.3.0.tar.bz2" ], "version": "3.3.0" } ] }, "xeus": { "alias": [], "categories": [], "dependencies": [ "cmake", "cppzmq", "cryptopp", "cxx", "gmake", "libzmq", "ninja", "nlohmann-json", "openssl", "uuid", "xtl" ], "downloads": [ "https://github.com/QuantStack/xeus/archive/develop.tar.gz", "https://github.com/QuantStack/xeus/archive/1.0.4.tar.gz", "https://github.com/QuantStack/xeus/archive/0.15.0.tar.gz", "https://github.com/QuantStack/xeus/archive/0.14.1.tar.gz", "https://github.com/QuantStack/xeus.git" ], "homepages": [ "https://xeus.readthedocs.io/en/latest/" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "tomstitt" ], "name": "xeus", "patches": [ "cmake_find_cryptopp_and_check_cxx_compatibility.patch when @:0.15.0" ], "summary": "QuantStack C++ implementation of Jupyter kernel protocol\n", "version": [ { "downloads": [ "https://github.com/QuantStack/xeus/archive/0.14.1.tar.gz" ], "version": "0.14.1" }, { "downloads": [ "https://github.com/QuantStack/xeus/archive/0.15.0.tar.gz" ], "version": "0.15.0" }, { "downloads": [ "https://github.com/QuantStack/xeus/archive/1.0.4.tar.gz" ], "version": "1.0.4" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/QuantStack/xeus.git" } ], "version": "develop" } ] }, "xev": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxrandr", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xev-1.2.6.tar.gz", "https://www.x.org/archive/individual/app/xev-1.2.5.tar.gz", "https://www.x.org/archive/individual/app/xev-1.2.4.tar.gz", "https://www.x.org/archive/individual/app/xev-1.2.3.tar.gz", "https://www.x.org/archive/individual/app/xev-1.2.2.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xev" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xev", "patches": [], "summary": "xev creates a window and then asks the X server to send it X11 events\nwhenever anything happens to the window (such as it being moved,\nresized, typed in, clicked in, etc.). You can also attach it to an\nexisting window. It is useful for seeing what causes events to occur and\nto display the information that they contain; it is essentially a\ndebugging and development tool, and should not be needed in normal\nusage.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xev-1.2.2.tar.gz" ], "version": "1.2.2" }, { "downloads": [ "https://www.x.org/archive/individual/app/xev-1.2.3.tar.gz" ], "version": "1.2.3" }, { "downloads": [ "https://www.x.org/archive/individual/app/xev-1.2.4.tar.gz" ], "version": "1.2.4" }, { "downloads": [ "https://www.x.org/archive/individual/app/xev-1.2.5.tar.gz" ], "version": "1.2.5" }, { "downloads": [ "https://www.x.org/archive/individual/app/xev-1.2.6.tar.gz" ], "version": "1.2.6" } ] }, "xextproto": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/proto/xextproto-7.3.0.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/proto/xextproto" ], "licenses": [], "maintainers": [], "name": "xextproto", "patches": [], "summary": "X Protocol Extensions.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/proto/xextproto-7.3.0.tar.gz" ], "version": "7.3.0" } ] }, "xeyes": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxcb", "libxext", "libxi", "libxmu", "libxrender", "libxt", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/app/xeyes-1.2.0.tar.gz", "https://www.x.org/archive/individual/app/xeyes-1.1.2.tar.gz", "https://www.x.org/archive/individual/app/xeyes-1.1.1.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xeyes" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xeyes", "patches": [], "summary": "xeyes - a follow the mouse X demo, using the X SHAPE extension\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xeyes-1.1.1.tar.gz" ], "version": "1.1.1" }, { "downloads": [ "https://www.x.org/archive/individual/app/xeyes-1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://www.x.org/archive/individual/app/xeyes-1.2.0.tar.gz" ], "version": "1.2.0" } ] }, "xf86bigfontproto": { "alias": [], "categories": [], "dependencies": [ "gmake", "gnuconfig" ], "downloads": [ "https://www.x.org/archive/individual/proto/xf86bigfontproto-1.2.0.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/proto/xf86bigfontproto" ], "licenses": [], "maintainers": [], "name": "xf86bigfontproto", "patches": [], "summary": "X.org XF86BigFontProto protocol headers.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/proto/xf86bigfontproto-1.2.0.tar.gz" ], "version": "1.2.0" } ] }, "xf86dga": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxxf86dga", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/app/xf86dga-1.0.3.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xf86dga" ], "licenses": [], "maintainers": [], "name": "xf86dga", "patches": [], "summary": "dga is a simple test client for the XFree86-DGA extension.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xf86dga-1.0.3.tar.gz" ], "version": "1.0.3" } ] }, "xf86dgaproto": { "alias": [], "categories": [], "dependencies": [ "gmake", "gnuconfig" ], "downloads": [ "https://www.x.org/archive/individual/proto/xf86dgaproto-2.1.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/proto/xf86dgaproto" ], "licenses": [], "maintainers": [], "name": "xf86dgaproto", "patches": [], "summary": "X.org XF86DGAProto protocol headers.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/proto/xf86dgaproto-2.1.tar.gz" ], "version": "2.1" } ] }, "xf86driproto": { "alias": [], "categories": [], "dependencies": [ "gmake", "gnuconfig", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/proto/xf86driproto-2.1.1.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/proto/xf86driproto" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xf86driproto", "patches": [], "summary": "XFree86 Direct Rendering Infrastructure Extension. This extension\ndefines a protocol to allow user applications to access the video\nhardware without requiring data to be passed through the X server.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/proto/xf86driproto-2.1.1.tar.gz" ], "version": "2.1.1" } ] }, "xf86miscproto": { "alias": [], "categories": [], "dependencies": [ "gmake", "gnuconfig" ], "downloads": [ "https://www.x.org/archive/individual/proto/xf86miscproto-0.9.3.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/proto/xf86miscproto" ], "licenses": [], "maintainers": [], "name": "xf86miscproto", "patches": [], "summary": "This package includes the protocol definitions of the \"XFree86-Misc\"\nextension to the X11 protocol. The \"XFree86-Misc\" extension is supported\nby the XFree86 X server and versions of the Xorg X server prior to Xorg\n1.6.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/proto/xf86miscproto-0.9.3.tar.gz" ], "version": "0.9.3" } ] }, "xf86rushproto": { "alias": [], "categories": [], "dependencies": [ "gmake", "gnuconfig" ], "downloads": [ "https://www.x.org/archive/individual/proto/xf86rushproto-1.1.2.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/proto/xf86rushproto" ], "licenses": [], "maintainers": [], "name": "xf86rushproto", "patches": [], "summary": "X.org XF86RushProto protocol headers.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/proto/xf86rushproto-1.1.2.tar.gz" ], "version": "1.1.2" } ] }, "xf86vidmodeproto": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/proto/xf86vidmodeproto-2.3.1.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/proto/xf86vidmodeproto" ], "licenses": [], "maintainers": [], "name": "xf86vidmodeproto", "patches": [], "summary": "XFree86 Video Mode Extension. This extension defines a protocol for\ndynamically configuring modelines and gamma.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/proto/xf86vidmodeproto-2.3.1.tar.gz" ], "version": "2.3.1" } ] }, "xfce4-appfinder": { "alias": [], "categories": [], "dependencies": [ "garcon", "glib", "gmake", "gnuconfig", "intltool", "libxfce4ui" ], "downloads": [ "https://archive.xfce.org/xfce/4.16/src/xfce4-appfinder-4.18.0.tar.bz2", "https://archive.xfce.org/xfce/4.16/src/xfce4-appfinder-4.16.0.tar.bz2" ], "homepages": [ "https://docs.xfce.org/xfce/xfce4-appfinder/start" ], "licenses": [ "GPLv2" ], "maintainers": [ "teaguesterling" ], "name": "xfce4-appfinder", "patches": [], "summary": "Program to find and launch installed applications for XFCE4\n", "version": [ { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/xfce4-appfinder-4.16.0.tar.bz2" ], "version": "4.16.0" }, { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/xfce4-appfinder-4.18.0.tar.bz2" ], "version": "4.18.0" } ] }, "xfce4-core": { "alias": [], "categories": [], "dependencies": [ "exo", "garcon", "libxfce4ui", "libxfce4util", "thunar", "tumbler", "xfce4-appfinder", "xfce4-panel", "xfce4-session", "xfce4-settings", "xfconf", "xfdesktop", "xfwm4" ], "downloads": [], "homepages": [ "https://docs.xfce.org/start" ], "licenses": [], "maintainers": [ "teaguesterling" ], "name": "xfce4-core", "patches": [], "summary": "Core libraries and applications for the Xfce4 desktop environment\n", "version": [ { "downloads": [ [] ], "version": "4.16" }, { "downloads": [ [] ], "version": "4.18" } ] }, "xfce4-panel": { "alias": [], "categories": [], "dependencies": [ "exo", "garcon", "glib", "gmake", "gnuconfig", "gobject-introspection", "gtkplus", "intltool", "libwnck", "libxfce4ui", "libxfce4util", "startup-notification" ], "downloads": [ "https://archive.xfce.org/xfce/4.16/src/xfce4-panel-4.18.0.tar.bz2", "https://archive.xfce.org/xfce/4.16/src/xfce4-panel-4.16.0.tar.bz2" ], "homepages": [ "https://docs.xfce.org/xfce/xfce4-panel/start" ], "licenses": [ "GPLv2 OR LGPLv2" ], "maintainers": [ "teaguesterling" ], "name": "xfce4-panel", "patches": [ "fix-libxfce4util-gir.patch when @4.16.0" ], "summary": "Panel manager for Xfce4\n", "version": [ { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/xfce4-panel-4.16.0.tar.bz2" ], "version": "4.16.0" }, { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/xfce4-panel-4.18.0.tar.bz2" ], "version": "4.18.0" } ] }, "xfce4-session": { "alias": [], "categories": [], "dependencies": [ "adwaita-icon-theme", "dbus-glib", "glib", "gmake", "gnuconfig", "hicolor-icon-theme", "iceauth", "intltool", "libwnck", "libxfce4ui", "perl-xml-parser" ], "downloads": [ "https://archive.xfce.org/xfce/4.16/src/xfce4-session-4.18.0.tar.bz2", "https://archive.xfce.org/xfce/4.16/src/xfce4-session-4.16.0.tar.bz2" ], "homepages": [ "https://docs.xfce.org/xfce/xfce4-session/start" ], "licenses": [ "GPLv2" ], "maintainers": [ "teaguesterling" ], "name": "xfce4-session", "patches": [], "summary": "Session manager for Xfce4\n", "version": [ { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/xfce4-session-4.16.0.tar.bz2" ], "version": "4.16.0" }, { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/xfce4-session-4.18.0.tar.bz2" ], "version": "4.18.0" } ] }, "xfce4-settings": { "alias": [], "categories": [], "dependencies": [ "dbus-glib", "exo", "garcon", "glib", "gmake", "gnuconfig", "gobject-introspection", "intltool", "libnotify", "libxcursor", "libxfce4ui", "libxfce4util", "libxi", "libxrandr", "xfconf" ], "downloads": [ "https://archive.xfce.org/xfce/4.16/src/xfce4-settings-4.18.0.tar.bz2", "https://archive.xfce.org/xfce/4.16/src/xfce4-settings-4.16.0.tar.bz2" ], "homepages": [ "https://docs.xfce.org/xfce/xfce4-settings/start" ], "licenses": [ "GPLv2" ], "maintainers": [ "teaguesterling" ], "name": "xfce4-settings", "patches": [], "summary": "Daemon, manager, and editor to centralize the configuration management\nfor XFCE4\n", "version": [ { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/xfce4-settings-4.16.0.tar.bz2" ], "version": "4.16.0" }, { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/xfce4-settings-4.18.0.tar.bz2" ], "version": "4.18.0" } ] }, "xfconf": { "alias": [], "categories": [], "dependencies": [ "dbus-glib", "gettext", "glib", "gmake", "gnuconfig", "intltool", "libxfce4util" ], "downloads": [ "https://archive.xfce.org/xfce/4.16/src/xfconf-4.18.0.tar.bz2", "https://archive.xfce.org/xfce/4.16/src/xfconf-4.16.0.tar.bz2" ], "homepages": [ "https://docs.xfce.org/xfce/xfconf/start" ], "licenses": [ "LGPLv2.1" ], "maintainers": [ "teaguesterling" ], "name": "xfconf", "patches": [], "summary": "xfconf - Configuration Storage System for XFCE4\n", "version": [ { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/xfconf-4.16.0.tar.bz2" ], "version": "4.16.0" }, { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/xfconf-4.18.0.tar.bz2" ], "version": "4.18.0" } ] }, "xfd": { "alias": [], "categories": [], "dependencies": [ "c", "fontconfig", "gettext", "gmake", "gnuconfig", "libxaw", "libxft", "libxmu", "libxrender", "libxt", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xfd-1.1.4.tar.gz", "https://www.x.org/archive/individual/app/xfd-1.1.3.tar.gz", "https://www.x.org/archive/individual/app/xfd-1.1.2.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xfd" ], "licenses": [ "X11" ], "maintainers": [], "name": "xfd", "patches": [], "summary": "xfd - display all the characters in a font using either the X11 core\nprotocol or libXft2.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xfd-1.1.2.tar.gz" ], "version": "1.1.2" }, { "downloads": [ "https://www.x.org/archive/individual/app/xfd-1.1.3.tar.gz" ], "version": "1.1.3" }, { "downloads": [ "https://www.x.org/archive/individual/app/xfd-1.1.4.tar.gz" ], "version": "1.1.4" } ] }, "xfdesktop": { "alias": [], "categories": [], "dependencies": [ "exo", "garcon", "glib", "gmake", "gnuconfig", "gtkplus", "intltool", "libnotify", "libwnck", "libxfce4ui", "xfconf" ], "downloads": [ "https://archive.xfce.org/xfce/4.16/src/xfdesktop-4.18.0.tar.bz2", "https://archive.xfce.org/xfce/4.16/src/xfdesktop-4.16.0.tar.bz2" ], "homepages": [ "https://docs.xfce.org/xfce/xfdesktop/start" ], "licenses": [ "GPLv2" ], "maintainers": [ "teaguesterling" ], "name": "xfdesktop", "patches": [], "summary": "Xfdesktop is a desktop manager for the Xfce Desktop Environment.\n", "version": [ { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/xfdesktop-4.16.0.tar.bz2" ], "version": "4.16.0" }, { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/xfdesktop-4.18.0.tar.bz2" ], "version": "4.18.0" } ] }, "xfindproxy": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libice", "libxt", "pkgconfig", "util-macros", "xproto", "xproxymanagementprotocol" ], "downloads": [ "https://www.x.org/archive/individual/app/xfindproxy-1.0.4.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xfindproxy" ], "licenses": [], "maintainers": [], "name": "xfindproxy", "patches": [], "summary": "xfindproxy is used to locate available X11 proxy services. It utilizes\nthe Proxy Management Protocol to communicate with a proxy manager. The\nproxy manager keeps track of all available proxy services, starts new\nproxies when necessary, and makes sure that proxies are shared whenever\npossible.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xfindproxy-1.0.4.tar.gz" ], "version": "1.0.4" } ] }, "xfontsel": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxaw", "libxmu", "libxt", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/app/xfontsel-1.1.0.tar.gz", "https://www.x.org/archive/individual/app/xfontsel-1.0.6.tar.gz", "https://www.x.org/archive/individual/app/xfontsel-1.0.5.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xfontsel" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xfontsel", "patches": [], "summary": "xfontsel application provides a simple way to display the X11 core\nprotocol fonts known to your X server, examine samples of each, and\nretrieve the X Logical Font Description (\"XLFD\") full name for a font.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xfontsel-1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://www.x.org/archive/individual/app/xfontsel-1.0.6.tar.gz" ], "version": "1.0.6" }, { "downloads": [ "https://www.x.org/archive/individual/app/xfontsel-1.1.0.tar.gz" ], "version": "1.1.0" } ] }, "xforms": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "jpeg", "libx11", "libxpm" ], "downloads": [ "http://download.savannah.gnu.org/releases/xforms/xforms-1.2.4.tar.gz", "http://download.savannah.gnu.org/releases/xforms/xforms-1.2.3.tar.gz", "http://download.savannah.gnu.org/releases/xforms/xforms-1.0.91.tar.gz" ], "homepages": [ "https://www.nongnu.org/xforms/" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "xforms", "patches": [ "xformsPatch.patch" ], "summary": "This is the Free Software distribution of the XForms Library, a\ngraphical user interface toolkit for X Window Systems.\n", "version": [ { "downloads": [ "http://download.savannah.gnu.org/releases/xforms/xforms-1.0.91.tar.gz" ], "version": "1.0.91" }, { "downloads": [ "http://download.savannah.gnu.org/releases/xforms/xforms-1.2.3.tar.gz" ], "version": "1.2.3" }, { "downloads": [ "http://download.savannah.gnu.org/releases/xforms/xforms-1.2.4.tar.gz" ], "version": "1.2.4" } ] }, "xfs": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "font-util", "fontsproto", "gmake", "gnuconfig", "libxfont", "libxfont2", "pkgconfig", "util-macros", "xproto", "xtrans" ], "downloads": [ "https://www.x.org/archive/individual/app/xfs-1.2.1.tar.gz", "https://www.x.org/archive/individual/app/xfs-1.2.0.tar.gz", "https://www.x.org/archive/individual/app/xfs-1.1.4.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xfs" ], "licenses": [ "X11" ], "maintainers": [], "name": "xfs", "patches": [], "summary": "X Font Server.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xfs-1.1.4.tar.gz" ], "version": "1.1.4" }, { "downloads": [ "https://www.x.org/archive/individual/app/xfs-1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://www.x.org/archive/individual/app/xfs-1.2.1.tar.gz" ], "version": "1.2.1" } ] }, "xfsdump": { "alias": [], "categories": [], "dependencies": [ "attr", "autoconf", "automake", "c", "gettext", "gmake", "libtool", "m4", "util-linux", "xfsprogs" ], "downloads": [ "https://github.com/pcacjr/xfsdump/archive/v3.1.6.tar.gz", "https://github.com/pcacjr/xfsdump/archive/v3.1.5.tar.gz", "https://github.com/pcacjr/xfsdump/archive/v3.1.4.tar.gz" ], "homepages": [ "https://github.com/pcacjr/xfsdump" ], "licenses": [], "maintainers": [], "name": "xfsdump", "patches": [], "summary": "XFS Dump Tools.\n", "version": [ { "downloads": [ "https://github.com/pcacjr/xfsdump/archive/v3.1.4.tar.gz" ], "version": "3.1.4" }, { "downloads": [ "https://github.com/pcacjr/xfsdump/archive/v3.1.5.tar.gz" ], "version": "3.1.5" }, { "downloads": [ "https://github.com/pcacjr/xfsdump/archive/v3.1.6.tar.gz" ], "version": "3.1.6" } ] }, "xfsinfo": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libfs", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xfsinfo-1.0.7.tar.gz", "https://www.x.org/archive/individual/app/xfsinfo-1.0.6.tar.gz", "https://www.x.org/archive/individual/app/xfsinfo-1.0.5.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xfsinfo" ], "licenses": [], "maintainers": [], "name": "xfsinfo", "patches": [], "summary": "xfsinfo is a utility for displaying information about an X font server.\nIt is used to examine the capabilities of a server, the predefined\nvalues for various parameters used in communicating between clients and\nthe server, and the font catalogues and alternate servers that are\navailable.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xfsinfo-1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://www.x.org/archive/individual/app/xfsinfo-1.0.6.tar.gz" ], "version": "1.0.6" }, { "downloads": [ "https://www.x.org/archive/individual/app/xfsinfo-1.0.7.tar.gz" ], "version": "1.0.7" } ] }, "xfsprogs": { "alias": [], "categories": [], "dependencies": [ "c", "gettext", "gmake", "gnuconfig", "libinih", "liburcu", "util-linux", "uuid" ], "downloads": [ "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.11.0.tar.xz", "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.10.1.tar.xz", "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.10.0.tar.xz", "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.9.0.tar.xz", "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.8.0.tar.xz", "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.7.0.tar.xz", "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.6.0.tar.xz", "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.5.0.tar.xz", "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.4.0.tar.xz", "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.3.0.tar.xz", "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.2.0.tar.xz", "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.1.1.tar.xz", "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.1.0.tar.xz", "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.0.0.tar.xz", "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-5.11.0.tar.xz", "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-5.8.0.tar.xz", "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-5.7.0.tar.xz", "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-5.6.0.tar.xz", "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-4.20.0.tar.xz" ], "homepages": [ "https://github.com/mtanski/xfsprogs" ], "licenses": [ "LGPL-2.1-or-later" ], "maintainers": [], "name": "xfsprogs", "patches": [], "summary": "XFS User Tools.\n", "version": [ { "downloads": [ "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-4.20.0.tar.xz" ], "version": "4.20.0" }, { "downloads": [ "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-5.11.0.tar.xz" ], "version": "5.11.0" }, { "downloads": [ "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-5.6.0.tar.xz" ], "version": "5.6.0" }, { "downloads": [ "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-5.7.0.tar.xz" ], "version": "5.7.0" }, { "downloads": [ "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-5.8.0.tar.xz" ], "version": "5.8.0" }, { "downloads": [ "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.0.0.tar.xz" ], "version": "6.0.0" }, { "downloads": [ "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.1.0.tar.xz" ], "version": "6.1.0" }, { "downloads": [ "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.1.1.tar.xz" ], "version": "6.1.1" }, { "downloads": [ "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.10.0.tar.xz" ], "version": "6.10.0" }, { "downloads": [ "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.10.1.tar.xz" ], "version": "6.10.1" }, { "downloads": [ "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.11.0.tar.xz" ], "version": "6.11.0" }, { "downloads": [ "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.2.0.tar.xz" ], "version": "6.2.0" }, { "downloads": [ "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.3.0.tar.xz" ], "version": "6.3.0" }, { "downloads": [ "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.4.0.tar.xz" ], "version": "6.4.0" }, { "downloads": [ "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.5.0.tar.xz" ], "version": "6.5.0" }, { "downloads": [ "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.6.0.tar.xz" ], "version": "6.6.0" }, { "downloads": [ "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.7.0.tar.xz" ], "version": "6.7.0" }, { "downloads": [ "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.8.0.tar.xz" ], "version": "6.8.0" }, { "downloads": [ "http://kernel.org/pub/linux/utils/fs/xfs/xfsprogs/xfsprogs-6.9.0.tar.xz" ], "version": "6.9.0" } ] }, "xfwm4": { "alias": [], "categories": [], "dependencies": [ "dbus-glib", "glib", "gmake", "gnuconfig", "gtkplus", "intltool", "libwnck", "libxfce4ui", "libxfce4util", "libxinerama", "startup-notification", "xfconf" ], "downloads": [ "https://archive.xfce.org/xfce/4.16/src/xfwm4-4.18.0.tar.bz2", "https://archive.xfce.org/xfce/4.16/src/xfwm4-4.16.0.tar.bz2" ], "homepages": [ "https://docs.xfce.org/xfce/xfwm4/start" ], "licenses": [ "GPLv2" ], "maintainers": [ "teaguesterling" ], "name": "xfwm4", "patches": [], "summary": "xfwm4 is the window manager for Xfce\n", "version": [ { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/xfwm4-4.16.0.tar.bz2" ], "version": "4.16.0" }, { "downloads": [ "https://archive.xfce.org/xfce/4.16/src/xfwm4-4.18.0.tar.bz2" ], "version": "4.18.0" } ] }, "xfwp": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libice", "pkgconfig", "util-macros", "xproto", "xproxymanagementprotocol" ], "downloads": [ "https://www.x.org/archive/individual/app/xfwp-1.0.3.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xfwp" ], "licenses": [], "maintainers": [], "name": "xfwp", "patches": [], "summary": "xfwp proxies X11 protocol connections, such as through a firewall.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xfwp-1.0.3.tar.gz" ], "version": "1.0.3" } ] }, "xgamma": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxxf86vm", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xgamma-1.0.7.tar.gz", "https://www.x.org/archive/individual/app/xgamma-1.0.6.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xgamma" ], "licenses": [ "custom" ], "maintainers": [], "name": "xgamma", "patches": [], "summary": "xgamma allows X users to query and alter the gamma correction of a\nmonitor via the X video mode extension (XFree86-VidModeExtension).\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xgamma-1.0.6.tar.gz" ], "version": "1.0.6" }, { "downloads": [ "https://www.x.org/archive/individual/app/xgamma-1.0.7.tar.gz" ], "version": "1.0.7" } ] }, "xgboost": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "cuda", "cxx", "gmake", "hwloc", "llvm-openmp", "nccl", "ninja" ], "downloads": [ "https://github.com/dmlc/xgboost.git" ], "homepages": [ "https://xgboost.ai/" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "adamjstewart" ], "name": "xgboost", "patches": [], "summary": "XGBoost is an optimized distributed gradient boosting library designed\nto be highly efficient, flexible and portable. It implements machine\nlearning algorithms under the Gradient Boosting framework. XGBoost\nprovides a parallel tree boosting (also known as GBDT, GBM) that solve\nmany data science problems in a fast and accurate way. The same code\nruns on major distributed environment (Hadoop, SGE, MPI) and can solve\nproblems beyond billions of examples.\n", "version": [ { "repositories": [ { "commit": "000292ce6d99ed658f6f9aebabc6e9b330696e7e", "type": "git", "url": "https://github.com/dmlc/xgboost.git" } ], "version": "1.3.3" }, { "repositories": [ { "commit": "742c19f3ecf2135b4e008a4f4a10b59add8b1045", "type": "git", "url": "https://github.com/dmlc/xgboost.git" } ], "version": "1.5.2" }, { "repositories": [ { "commit": "5d92a7d936fc3fad4c7ecb6031c3c1c7da882a14", "type": "git", "url": "https://github.com/dmlc/xgboost.git" } ], "version": "1.6.1" }, { "repositories": [ { "commit": "b9934246faa9a25e10a12339685dfbe56d56f70b", "type": "git", "url": "https://github.com/dmlc/xgboost.git" } ], "version": "1.6.2" }, { "repositories": [ { "commit": "36eb41c960483c8b52b44082663c99e6a0de440a", "type": "git", "url": "https://github.com/dmlc/xgboost.git" } ], "version": "1.7.6" }, { "repositories": [ { "commit": "213ebf7796b757448dfa2cfba532074696fa1524", "type": "git", "url": "https://github.com/dmlc/xgboost.git" } ], "version": "2.1.0" }, { "repositories": [ { "commit": "9c9db1259240bffe9040ed7ca6e3fb2c1bda80e4", "type": "git", "url": "https://github.com/dmlc/xgboost.git" } ], "version": "2.1.1" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/dmlc/xgboost.git" } ], "version": "master" } ] }, "xgc": { "alias": [], "categories": [], "dependencies": [ "bison", "c", "flex", "gmake", "gnuconfig", "libxaw", "libxt", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/app/xgc-1.0.6.tar.gz", "https://www.x.org/archive/individual/app/xgc-1.0.5.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xgc" ], "licenses": [], "maintainers": [], "name": "xgc", "patches": [], "summary": "xgc is an X11 graphics demo that shows various features of the X11 core\nprotocol graphics primitives.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xgc-1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://www.x.org/archive/individual/app/xgc-1.0.6.tar.gz" ], "version": "1.0.6" } ] }, "xhmm": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "lapack" ], "downloads": [ "https://bitbucket.org/statgen/xhmm.git" ], "homepages": [ "http://atgu.mgh.harvard.edu/xhmm/index.shtml" ], "licenses": [], "maintainers": [], "name": "xhmm", "patches": [], "summary": "The XHMM C++ software suite was written to call copy number variation\n(CNV) from next-generation sequencing projects, where exome capture was\nused (or targeted sequencing, more generally).\n", "version": [ { "repositories": [ { "commit": "cc14e528d90932f059ac4fe94e869e81221fd732", "type": "git", "url": "https://bitbucket.org/statgen/xhmm.git" } ], "version": "20160104" } ] }, "xhost": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxau", "libxmu", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xhost-1.0.9.tar.gz", "https://www.x.org/archive/individual/app/xhost-1.0.8.tar.gz", "https://www.x.org/archive/individual/app/xhost-1.0.7.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xhost" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xhost", "patches": [], "summary": "xhost is used to manage the list of host names or user names allowed to\nmake connections to the X server.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xhost-1.0.7.tar.gz" ], "version": "1.0.7" }, { "downloads": [ "https://www.x.org/archive/individual/app/xhost-1.0.8.tar.gz" ], "version": "1.0.8" }, { "downloads": [ "https://www.x.org/archive/individual/app/xhost-1.0.9.tar.gz" ], "version": "1.0.9" } ] }, "xineramaproto": { "alias": [], "categories": [], "dependencies": [ "gmake", "gnuconfig", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/proto/xineramaproto-1.2.1.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/proto/xineramaproto" ], "licenses": [], "maintainers": [], "name": "xineramaproto", "patches": [], "summary": "X Xinerama Extension. This is an X extension that allows multiple\nphysical screens controlled by a single X server to appear as a single\nscreen.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/proto/xineramaproto-1.2.1.tar.gz" ], "version": "1.2.1" } ] }, "xinit": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "gnuconfig", "libx11", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xinit-1.4.2.tar.gz", "https://www.x.org/archive/individual/app/xinit-1.4.1.tar.gz", "https://www.x.org/archive/individual/app/xinit-1.4.0.tar.gz", "https://www.x.org/archive/individual/app/xinit-1.3.4.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xinit" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xinit", "patches": [], "summary": "The xinit program is used to start the X Window System server and a\nfirst client program on systems that are not using a display manager\nsuch as xdm.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xinit-1.3.4.tar.gz" ], "version": "1.3.4" }, { "downloads": [ "https://www.x.org/archive/individual/app/xinit-1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://www.x.org/archive/individual/app/xinit-1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://www.x.org/archive/individual/app/xinit-1.4.2.tar.gz" ], "version": "1.4.2" } ] }, "xinput": { "alias": [], "categories": [], "dependencies": [ "c", "fixesproto", "gmake", "gnuconfig", "inputproto", "libx11", "libxext", "libxi", "libxinerama", "libxrandr", "pkgconfig", "randrproto", "util-macros", "xineramaproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xinput-1.6.3.tar.gz", "https://www.x.org/archive/individual/app/xinput-1.6.2.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xinput" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xinput", "patches": [], "summary": "xinput is a utility to configure and test XInput devices.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xinput-1.6.2.tar.gz" ], "version": "1.6.2" }, { "downloads": [ "https://www.x.org/archive/individual/app/xinput-1.6.3.tar.gz" ], "version": "1.6.3" } ] }, "xios": { "alias": [], "categories": [], "dependencies": [ "blitz", "boost", "c", "fortran", "gmake", "hdf5", "mpi", "netcdf-c", "netcdf-fortran", "perl", "perl-uri" ], "downloads": [], "homepages": [ "https://forge.ipsl.jussieu.fr/ioserver/wiki" ], "licenses": [], "maintainers": [], "name": "xios", "patches": [ "llvm_bug_17782.patch when @1.1: %apple-clang", "llvm_bug_17782.patch when @1.1: %clang", "earcut_missing_include_2.6.patch when @2.6:" ], "summary": "XML-IO-SERVER library for IO management of climate models.\n", "version": [ { "downloads": [ [] ], "version": "2.6" } ] }, "xkbcomp": { "alias": [], "categories": [], "dependencies": [ "bison", "c", "gmake", "gnuconfig", "libx11", "libxkbfile", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xkbcomp-1.4.7.tar.gz", "https://www.x.org/archive/individual/app/xkbcomp-1.4.6.tar.gz", "https://www.x.org/archive/individual/app/xkbcomp-1.4.5.tar.gz", "https://www.x.org/archive/individual/app/xkbcomp-1.4.4.tar.gz", "https://www.x.org/archive/individual/app/xkbcomp-1.3.1.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xkbcomp" ], "licenses": [ "MIT" ], "maintainers": [ "wdconinc" ], "name": "xkbcomp", "patches": [], "summary": "The X Keyboard (XKB) Extension essentially replaces the core protocol\ndefinition of a keyboard. The extension makes it possible to specify\nclearly and explicitly most aspects of keyboard behaviour on a per-key\nbasis, and to track more closely the logical and physical state of a\nkeyboard. It also includes a number of keyboard controls designed to\nmake keyboards more accessible to people with physical impairments.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xkbcomp-1.3.1.tar.gz" ], "version": "1.3.1" }, { "downloads": [ "https://www.x.org/archive/individual/app/xkbcomp-1.4.4.tar.gz" ], "version": "1.4.4" }, { "downloads": [ "https://www.x.org/archive/individual/app/xkbcomp-1.4.5.tar.gz" ], "version": "1.4.5" }, { "downloads": [ "https://www.x.org/archive/individual/app/xkbcomp-1.4.6.tar.gz" ], "version": "1.4.6" }, { "downloads": [ "https://www.x.org/archive/individual/app/xkbcomp-1.4.7.tar.gz" ], "version": "1.4.7" } ] }, "xkbdata": { "alias": [ { "alias_for": "xkbdata", "name": "xkbdata-api" } ], "categories": [], "dependencies": [ "gmake", "gnuconfig", "xkbcomp" ], "downloads": [ "https://www.x.org/archive/individual/data/xkbdata-1.0.1.tar.gz" ], "homepages": [ "https://www.x.org/wiki/XKB/" ], "licenses": [], "maintainers": [], "name": "xkbdata", "patches": [], "summary": "The XKB data files for the various keyboard models, layouts, and\nlocales.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/data/xkbdata-1.0.1.tar.gz" ], "version": "1.0.1" } ] }, "xkbdata-api": { "alias": [ { "alias_for": "xkeyboard-config", "name": "xkbdata-api" } ], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "intltool", "libx11", "libxslt", "pkgconfig", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/data/xkeyboard-config/xkeyboard-config-2.34.tar.gz", "https://www.x.org/archive/individual/data/xkeyboard-config/xkeyboard-config-2.18.tar.gz" ], "homepages": [ "https://www.freedesktop.org/wiki/Software/XKeyboardConfig/" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xkeyboard-config", "patches": [], "summary": "This project provides a consistent, well-structured, frequently\nreleased, open source database of keyboard configuration data. The\nproject is targeted to XKB-based systems.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/data/xkeyboard-config/xkeyboard-config-2.18.tar.gz" ], "version": "2.18" }, { "downloads": [ "https://www.x.org/archive/individual/data/xkeyboard-config/xkeyboard-config-2.34.tar.gz" ], "version": "2.34" } ] }, "xkbevd": { "alias": [], "categories": [], "dependencies": [ "bison", "c", "gmake", "gnuconfig", "libx11", "libxkbfile", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/app/xkbevd-1.1.5.tar.gz", "https://www.x.org/archive/individual/app/xkbevd-1.1.4.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xkbevd" ], "licenses": [], "maintainers": [], "name": "xkbevd", "patches": [], "summary": "XKB event daemon demo.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xkbevd-1.1.4.tar.gz" ], "version": "1.1.4" }, { "downloads": [ "https://www.x.org/archive/individual/app/xkbevd-1.1.5.tar.gz" ], "version": "1.1.5" } ] }, "xkbprint": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxkbfile", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xkbprint-1.0.6.tar.gz", "https://www.x.org/archive/individual/app/xkbprint-1.0.5.tar.gz", "https://www.x.org/archive/individual/app/xkbprint-1.0.4.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xkbprint" ], "licenses": [], "maintainers": [], "name": "xkbprint", "patches": [], "summary": "xkbprint generates a printable or encapsulated PostScript description of\nan XKB keyboard description.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xkbprint-1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://www.x.org/archive/individual/app/xkbprint-1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://www.x.org/archive/individual/app/xkbprint-1.0.6.tar.gz" ], "version": "1.0.6" } ] }, "xkbutils": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "inputproto", "libx11", "libxaw", "libxt", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xkbutils-1.0.6.tar.gz", "https://www.x.org/archive/individual/app/xkbutils-1.0.5.tar.gz", "https://www.x.org/archive/individual/app/xkbutils-1.0.4.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xkbutils" ], "licenses": [], "maintainers": [], "name": "xkbutils", "patches": [], "summary": "xkbutils is a collection of small utilities utilizing the XKeyboard\n(XKB) extension to the X11 protocol.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xkbutils-1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://www.x.org/archive/individual/app/xkbutils-1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://www.x.org/archive/individual/app/xkbutils-1.0.6.tar.gz" ], "version": "1.0.6" } ] }, "xkeyboard-config": { "alias": [ { "alias_for": "xkeyboard-config", "name": "xkbdata-api" } ], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "intltool", "libx11", "libxslt", "pkgconfig", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/data/xkeyboard-config/xkeyboard-config-2.34.tar.gz", "https://www.x.org/archive/individual/data/xkeyboard-config/xkeyboard-config-2.18.tar.gz" ], "homepages": [ "https://www.freedesktop.org/wiki/Software/XKeyboardConfig/" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xkeyboard-config", "patches": [], "summary": "This project provides a consistent, well-structured, frequently\nreleased, open source database of keyboard configuration data. The\nproject is targeted to XKB-based systems.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/data/xkeyboard-config/xkeyboard-config-2.18.tar.gz" ], "version": "2.18" }, { "downloads": [ "https://www.x.org/archive/individual/data/xkeyboard-config/xkeyboard-config-2.34.tar.gz" ], "version": "2.34" } ] }, "xkill": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxmu", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xkill-1.0.6.tar.gz", "https://www.x.org/archive/individual/app/xkill-1.0.5.tar.gz", "https://www.x.org/archive/individual/app/xkill-1.0.4.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xkill" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xkill", "patches": [], "summary": "xkill is a utility for forcing the X server to close connections to\nclients. This program is very dangerous, but is useful for aborting\nprograms that have displayed undesired windows on a user's screen.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xkill-1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://www.x.org/archive/individual/app/xkill-1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://www.x.org/archive/individual/app/xkill-1.0.6.tar.gz" ], "version": "1.0.6" } ] }, "xload": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxaw", "libxmu", "libxt", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xload-1.2.0.tar.gz", "https://www.x.org/archive/individual/app/xload-1.1.4.tar.gz", "https://www.x.org/archive/individual/app/xload-1.1.3.tar.gz", "https://www.x.org/archive/individual/app/xload-1.1.2.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xload" ], "licenses": [ "MIT" ], "maintainers": 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This XRootD Client Plugin can be used to record\nall user's actions on XrdCl::File object and store them into a csv file.\n", "version": [ { "downloads": [ "https://github.com/xrootd/xrdcl-record/archive/refs/tags/v5.4.2.tar.gz" ], "version": "5.4.2" } ] }, "xrefresh": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xrefresh-1.1.0.tar.gz", "https://www.x.org/archive/individual/app/xrefresh-1.0.7.tar.gz", "https://www.x.org/archive/individual/app/xrefresh-1.0.6.tar.gz", "https://www.x.org/archive/individual/app/xrefresh-1.0.5.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xrefresh" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xrefresh", "patches": [], "summary": "xrefresh - refresh all or part of an X screen.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xrefresh-1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://www.x.org/archive/individual/app/xrefresh-1.0.6.tar.gz" ], "version": "1.0.6" }, { "downloads": [ "https://www.x.org/archive/individual/app/xrefresh-1.0.7.tar.gz" ], "version": "1.0.7" }, { "downloads": [ "https://www.x.org/archive/individual/app/xrefresh-1.1.0.tar.gz" ], "version": "1.1.0" } ] }, "xrootd": { "alias": [], "categories": [], "dependencies": [ "bzip2", "c", "cmake", "curl", "cxx", "davix", "gmake", "isa-l", "json-c", "krb5", "libxml2", "ninja", "openssl", "pkgconfig", "py-pip", "py-setuptools", "python", "python-venv", "readline", "scitokens-cpp", "uuid", "xz", "zlib-api" ], "downloads": [ "https://xrootd.web.cern.ch/download/v5.9.1/xrootd-5.9.1.tar.gz", "https://xrootd.web.cern.ch/download/v5.8.4/xrootd-5.8.4.tar.gz", "https://xrootd.web.cern.ch/download/v5.7.3/xrootd-5.7.3.tar.gz", "https://xrootd.web.cern.ch/download/v5.7.1/xrootd-5.7.1.tar.gz", "https://xrootd.web.cern.ch/download/v5.7.0/xrootd-5.7.0.tar.gz", "https://xrootd.web.cern.ch/download/v5.6.9/xrootd-5.6.9.tar.gz", "https://xrootd.web.cern.ch/download/v5.6.8/xrootd-5.6.8.tar.gz", "https://xrootd.web.cern.ch/download/v5.6.7/xrootd-5.6.7.tar.gz", "https://xrootd.web.cern.ch/download/v5.6.6/xrootd-5.6.6.tar.gz", "https://xrootd.web.cern.ch/download/v5.6.5/xrootd-5.6.5.tar.gz", "https://xrootd.web.cern.ch/download/v5.6.4/xrootd-5.6.4.tar.gz", "https://xrootd.web.cern.ch/download/v5.6.3/xrootd-5.6.3.tar.gz", "https://xrootd.web.cern.ch/download/v5.6.2/xrootd-5.6.2.tar.gz", "https://xrootd.web.cern.ch/download/v5.6.1/xrootd-5.6.1.tar.gz", "https://xrootd.web.cern.ch/download/v5.6.0/xrootd-5.6.0.tar.gz", "https://xrootd.web.cern.ch/download/v5.5.5/xrootd-5.5.5.tar.gz", "https://xrootd.web.cern.ch/download/v5.5.4/xrootd-5.5.4.tar.gz", "https://xrootd.web.cern.ch/download/v5.5.3/xrootd-5.5.3.tar.gz", "https://xrootd.web.cern.ch/download/v5.5.2/xrootd-5.5.2.tar.gz", "https://xrootd.web.cern.ch/download/v5.5.1/xrootd-5.5.1.tar.gz", "https://github.com/xrootd/xrootd.git" ], "homepages": [ "https://xrootd.web.cern.ch" ], "licenses": [ "LGPL-3.0-only" ], "maintainers": [ "gartung", "greenc-FNAL", "marcmengel", "vitodb", "wdconinc" ], "name": "xrootd", "patches": [ "https://github.com/xrootd/xrootd/commit/c267103e3093d9fc1370d56eed7481dbc10eba7d.patch?full_index=1 when @5.5.1", "https://github.com/xrootd/xrootd/commit/984efbc72bdad86b43923569f4dfa707b7a287a2.patch?full_index=1 when @5.5.3", "https://patch-diff.githubusercontent.com/raw/xrootd/xrootd/pull/2013.patch?full_index=1 when @5.5.0:5.5.5", "no-systemd-pre-5.5.2.patch when @:5.5.1", "no-systemd-5.5.2.patch when @5.5.2:" ], "summary": "The XROOTD project aims at giving high performance, scalable fault\ntolerant access to data repositories of many kinds.\n", "version": [ { "downloads": [ "https://xrootd.web.cern.ch/download/v5.5.1/xrootd-5.5.1.tar.gz" ], "version": "5.5.1" }, { "downloads": [ "https://xrootd.web.cern.ch/download/v5.5.2/xrootd-5.5.2.tar.gz" ], "version": "5.5.2" }, { "downloads": [ "https://xrootd.web.cern.ch/download/v5.5.3/xrootd-5.5.3.tar.gz" ], "version": "5.5.3" }, { "downloads": [ "https://xrootd.web.cern.ch/download/v5.5.4/xrootd-5.5.4.tar.gz" ], "version": "5.5.4" }, { "downloads": [ "https://xrootd.web.cern.ch/download/v5.5.5/xrootd-5.5.5.tar.gz" ], "version": "5.5.5" }, { "downloads": [ "https://xrootd.web.cern.ch/download/v5.6.0/xrootd-5.6.0.tar.gz" ], "version": "5.6.0" }, { "downloads": [ "https://xrootd.web.cern.ch/download/v5.6.1/xrootd-5.6.1.tar.gz" ], "version": "5.6.1" }, { "downloads": [ "https://xrootd.web.cern.ch/download/v5.6.2/xrootd-5.6.2.tar.gz" ], "version": "5.6.2" }, { "downloads": [ "https://xrootd.web.cern.ch/download/v5.6.3/xrootd-5.6.3.tar.gz" ], "version": "5.6.3" }, { "downloads": [ "https://xrootd.web.cern.ch/download/v5.6.4/xrootd-5.6.4.tar.gz" ], "version": "5.6.4" }, { "downloads": [ "https://xrootd.web.cern.ch/download/v5.6.5/xrootd-5.6.5.tar.gz" ], "version": "5.6.5" }, { "downloads": [ "https://xrootd.web.cern.ch/download/v5.6.6/xrootd-5.6.6.tar.gz" ], "version": "5.6.6" }, { "downloads": [ "https://xrootd.web.cern.ch/download/v5.6.7/xrootd-5.6.7.tar.gz" ], "version": "5.6.7" }, { "downloads": [ "https://xrootd.web.cern.ch/download/v5.6.8/xrootd-5.6.8.tar.gz" ], "version": "5.6.8" }, { "downloads": [ "https://xrootd.web.cern.ch/download/v5.6.9/xrootd-5.6.9.tar.gz" ], "version": "5.6.9" }, { "downloads": [ "https://xrootd.web.cern.ch/download/v5.7.0/xrootd-5.7.0.tar.gz" ], "version": "5.7.0" }, { "downloads": [ "https://xrootd.web.cern.ch/download/v5.7.1/xrootd-5.7.1.tar.gz" ], "version": "5.7.1" }, { "downloads": [ "https://xrootd.web.cern.ch/download/v5.7.3/xrootd-5.7.3.tar.gz" ], "version": "5.7.3" }, { "downloads": [ "https://xrootd.web.cern.ch/download/v5.8.4/xrootd-5.8.4.tar.gz" ], "version": "5.8.4" }, { "downloads": [ "https://xrootd.web.cern.ch/download/v5.9.1/xrootd-5.9.1.tar.gz" ], "version": "5.9.1" } ] }, "xrx": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libice", "libx11", "libxau", "libxaw", "libxext", "libxt", "pkgconfig", "util-macros", "xproxymanagementprotocol", "xtrans" ], "downloads": [ "https://www.x.org/archive/individual/app/xrx-1.0.4.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xrx" ], "licenses": [], "maintainers": [], "name": "xrx", "patches": [], "summary": "The remote execution (RX) service specifies a MIME format for invoking\napplications remotely, for example via a World Wide Web browser. This RX\nformat specifies a syntax for listing network services required by the\napplication, for example an X display server. The requesting Web browser\nmust identify specific instances of the services in the request to\ninvoke the application.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xrx-1.0.4.tar.gz" ], "version": "1.0.4" } ] }, "xsbench": { "alias": [], "categories": [ "proxy-app", "ecp-proxy-app" ], "dependencies": [ "c", "cuda", "cxx", "gmake", "mpi" ], "downloads": [ "https://github.com/ANL-CESAR/XSBench/archive/v20.tar.gz", "https://github.com/ANL-CESAR/XSBench/archive/v19.tar.gz", "https://github.com/ANL-CESAR/XSBench/archive/v18.tar.gz", "https://github.com/ANL-CESAR/XSBench/archive/v14.tar.gz", "https://github.com/ANL-CESAR/XSBench/archive/v13.tar.gz" ], "homepages": [ "https://github.com/ANL-CESAR/XSBench/" ], "licenses": [], "maintainers": [], "name": "xsbench", "patches": [], "summary": "XSBench is a mini-app representing a key computational kernel of the\nMonte Carlo neutronics application OpenMC. A full explanation of the\ntheory and purpose of XSBench is provided in docs/XSBench_Theory.pdf.\n", "version": [ { "downloads": [ "https://github.com/ANL-CESAR/XSBench/archive/v13.tar.gz" ], "version": "13" }, { "downloads": [ "https://github.com/ANL-CESAR/XSBench/archive/v14.tar.gz" ], "version": "14" }, { "downloads": [ "https://github.com/ANL-CESAR/XSBench/archive/v18.tar.gz" ], "version": "18" }, { "downloads": [ "https://github.com/ANL-CESAR/XSBench/archive/v19.tar.gz" ], "version": "19" }, { "downloads": [ "https://github.com/ANL-CESAR/XSBench/archive/v20.tar.gz" ], "version": "20" } ] }, "xscope": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "pkgconfig", "util-macros", "xproto", "xtrans" ], "downloads": [ "https://www.x.org/archive/individual/app/xscope-1.4.3.tar.gz", "https://www.x.org/archive/individual/app/xscope-1.4.2.tar.gz", "https://www.x.org/archive/individual/app/xscope-1.4.1.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xscope" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xscope", "patches": [], "summary": "XSCOPE -- a program to monitor X11/Client conversations.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xscope-1.4.1.tar.gz" ], "version": "1.4.1" }, { "downloads": [ "https://www.x.org/archive/individual/app/xscope-1.4.2.tar.gz" ], "version": "1.4.2" }, { "downloads": [ "https://www.x.org/archive/individual/app/xscope-1.4.3.tar.gz" ], "version": "1.4.3" } ] }, "xsd": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake", "libtool", "xerces-c" ], "downloads": [ "https://www.codesynthesis.com/download/xsd/4.0/xsd-4.0.0+dep.tar.bz2" ], "homepages": [ "https://www.codesynthesis.com" ], "licenses": [], "maintainers": [], "name": "xsd", "patches": [ "https://git.codesynthesis.com/cgit/libxsd-frontend/libxsd-frontend/patch/?id=5029f8665190879285787a9dcdaf5f997cadd2e2" ], "summary": "CodeSynthesis XSD is an open-source, cross-platform W3C XML Schema to\nC++ data binding compiler. It support in-memory and event-driven XML\nprocessing models and is available for a wide range of C++ compilers and\nplatforms.\n", "version": [ { "downloads": [ "https://www.codesynthesis.com/download/xsd/4.0/xsd-4.0.0+dep.tar.bz2" ], "version": "4.0.0" } ] }, "xsdk": { "alias": [], "categories": [], "dependencies": [ "alquimia", "amrex", "arborx", "butterflypack", "c", "cuda", "cxx", "datatransferkit", "dealii", "exago", "fortran", "ginkgo", "heffte", "hiop", "hip", "hsa-rocr-dev", "hypre", "llvm-amdgpu", "magma", "mfem", "omega-h", "petsc", "pflotran", "phist", "plasma", "precice", "pumi", "py-libensemble", "py-petsc4py", "slate", "slepc", "strumpack", "sundials", "superlu-dist", "tasmanian", "trilinos" ], "downloads": [], "homepages": [ "https://xsdk.info" ], "licenses": [], "maintainers": [ "balay", "balos1", "luszczek", "shuds13", "v-dobrev" ], "name": "xsdk", "patches": [], "summary": "Xsdk is a suite of Department of Energy (DOE) packages for numerical\nsimulation. This is a Spack bundle package that installs the xSDK\npackages\n", "version": [ { "downloads": [ [] ], "version": "1.0.0" }, { "downloads": [ [] ], "version": "1.1.0" } ] }, "xset": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxmu", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xset-1.2.5.tar.gz", "https://www.x.org/archive/individual/app/xset-1.2.4.tar.gz", "https://www.x.org/archive/individual/app/xset-1.2.3.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xset" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xset", "patches": [], "summary": "User preference utility for X.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xset-1.2.3.tar.gz" ], "version": "1.2.3" }, { "downloads": [ "https://www.x.org/archive/individual/app/xset-1.2.4.tar.gz" ], "version": "1.2.4" }, { "downloads": [ "https://www.x.org/archive/individual/app/xset-1.2.5.tar.gz" ], "version": "1.2.5" } ] }, "xsetmode": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxi", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/app/xsetmode-1.0.0.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xsetmode" ], "licenses": [], "maintainers": [], "name": "xsetmode", "patches": [], "summary": "Set the mode for an X Input device.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xsetmode-1.0.0.tar.gz" ], "version": "1.0.0" } ] }, "xsetpointer": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "inputproto", "libx11", "libxi", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/app/xsetpointer-1.0.1.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xsetpointer" ], "licenses": [], "maintainers": [], "name": "xsetpointer", 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It is used by the X server,\nlibX11, libICE, the X font server, and related components.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/lib/xtrans-1.3.5.tar.gz" ], "version": "1.3.5" }, { "downloads": [ "https://www.x.org/archive/individual/lib/xtrans-1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://www.x.org/archive/individual/lib/xtrans-1.5.0.tar.gz" ], "version": "1.5.0" }, { "downloads": [ "https://www.x.org/archive/individual/lib/xtrans-1.5.2.tar.gz" ], "version": "1.5.2" }, { "downloads": [ "https://www.x.org/archive/individual/lib/xtrans-1.6.0.tar.gz" ], "version": "1.6.0" } ] }, "xtrap": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxtrap", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/app/xtrap-1.0.3.tar.gz", "https://www.x.org/archive/individual/app/xtrap-1.0.2.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xtrap" ], "licenses": [], "maintainers": [], "name": "xtrap", "patches": [], "summary": "XTrap sample clients.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xtrap-1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://www.x.org/archive/individual/app/xtrap-1.0.3.tar.gz" ], "version": "1.0.3" } ] }, "xts": { "alias": [], "categories": [], "dependencies": [ "bdftopcf", "c", "fixesproto", "gmake", "gnuconfig", "inputproto", "libx11", "libxau", "libxaw", "libxext", "libxi", "libxmu", "libxt", "libxtst", "mkfontdir", "perl", "pkgconfig", "recordproto", "util-macros", "xdpyinfo", "xset", "xtrans" ], "downloads": [ "https://www.x.org/archive/individual/test/xts-0.99.1.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/test/xts" ], "licenses": [], "maintainers": [], "name": "xts", "patches": [], "summary": "This is a revamped version of X Test Suite (XTS) which removes some of\nthe ugliness of building and running the tests.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/test/xts-0.99.1.tar.gz" ], "version": "0.99.1" } ] }, "xv": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "gmake", "libjpeg", "libpng", "libtiff", "libx11", "libxt", "ninja" ], "downloads": [ "https://github.com/jasper-software/xv/archive/refs/tags/v4.2.0.tar.gz" ], "homepages": [ "https://github.com/jasper-software/xv" ], "licenses": [], "maintainers": [], "name": "xv", "patches": [], "summary": " XV image viewer. The XV software was originally written by John\nBradley. John Bradley's web site for the XV software can be found at:\nhttp://www.trilon.com/xv\n", "version": [ { "downloads": [ "https://github.com/jasper-software/xv/archive/refs/tags/v4.2.0.tar.gz" ], "version": "4.2.0" } ] }, "xvidtune": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxaw", "libxmu", "libxt", "libxxf86vm", "pkgconfig", "util-macros" ], "downloads": [ "https://www.x.org/archive/individual/app/xvidtune-1.0.4.tar.gz", "https://www.x.org/archive/individual/app/xvidtune-1.0.3.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xvidtune" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xvidtune", "patches": [], "summary": "xvidtune is a client interface to the X server video mode extension\n(XFree86-VidModeExtension).\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xvidtune-1.0.3.tar.gz" ], "version": "1.0.3" }, { "downloads": [ "https://www.x.org/archive/individual/app/xvidtune-1.0.4.tar.gz" ], "version": "1.0.4" } ] }, "xvinfo": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxv", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xvinfo-1.1.5.tar.gz", "https://www.x.org/archive/individual/app/xvinfo-1.1.4.tar.gz", "https://www.x.org/archive/individual/app/xvinfo-1.1.3.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xvinfo" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xvinfo", "patches": [], "summary": "xvinfo prints out the capabilities of any video adaptors associated with\nthe display that are accessible through the X-Video extension.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xvinfo-1.1.3.tar.gz" ], "version": "1.1.3" }, { "downloads": [ "https://www.x.org/archive/individual/app/xvinfo-1.1.4.tar.gz" ], "version": "1.1.4" }, { "downloads": [ "https://www.x.org/archive/individual/app/xvinfo-1.1.5.tar.gz" ], "version": "1.1.5" } ] }, "xwd": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxkbfile", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xwd-1.0.8.tar.gz", "https://www.x.org/archive/individual/app/xwd-1.0.7.tar.gz", "https://www.x.org/archive/individual/app/xwd-1.0.6.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xwd" ], "licenses": [ "custom" ], "maintainers": [], "name": "xwd", "patches": [], "summary": "xwd - dump an image of an X window.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xwd-1.0.6.tar.gz" ], "version": "1.0.6" }, { "downloads": [ "https://www.x.org/archive/individual/app/xwd-1.0.7.tar.gz" ], "version": "1.0.7" }, { "downloads": [ "https://www.x.org/archive/individual/app/xwd-1.0.8.tar.gz" ], "version": "1.0.8" } ] }, "xwidgets": { "alias": [], "categories": [], "dependencies": [ "cmake", "cxx", "gmake", "ninja", "nlohmann-json", "xeus", "xproperty", "xtl" ], "downloads": [ "https://github.com/jupyter-xeus/xwidgets/archive/master.tar.gz", "https://github.com/jupyter-xeus/xwidgets/archive/0.25.0.tar.gz", "https://github.com/jupyter-xeus/xwidgets.git" ], "homepages": [ "https://github.com/jupyter-xeus/xwidgets" ], "licenses": [ "BSD-3-Clause" ], "maintainers": [ "tomstitt" ], "name": "xwidgets", "patches": [], "summary": "A C++ backend for Jupyter interactive widgets\n", "version": [ { "downloads": [ "https://github.com/jupyter-xeus/xwidgets/archive/0.25.0.tar.gz" ], "version": "0.25.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/jupyter-xeus/xwidgets.git" } ], "version": "master" } ] }, "xwininfo": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "libxcb", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xwininfo-1.1.6.tar.gz", "https://www.x.org/archive/individual/app/xwininfo-1.1.5.tar.gz", "https://www.x.org/archive/individual/app/xwininfo-1.1.4.tar.gz", "https://www.x.org/archive/individual/app/xwininfo-1.1.3.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xwininfo" ], "licenses": [ "MIT" ], "maintainers": [], "name": "xwininfo", "patches": [], "summary": "xwininfo prints information about windows on an X server. Various\ninformation is displayed depending on which options are selected.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xwininfo-1.1.3.tar.gz" ], "version": "1.1.3" }, { "downloads": [ "https://www.x.org/archive/individual/app/xwininfo-1.1.4.tar.gz" ], "version": "1.1.4" }, { "downloads": [ "https://www.x.org/archive/individual/app/xwininfo-1.1.5.tar.gz" ], "version": "1.1.5" }, { "downloads": [ "https://www.x.org/archive/individual/app/xwininfo-1.1.6.tar.gz" ], "version": "1.1.6" } ] }, "xwud": { "alias": [], "categories": [], "dependencies": [ "c", "gmake", "gnuconfig", "libx11", "pkgconfig", "util-macros", "xproto" ], "downloads": [ "https://www.x.org/archive/individual/app/xwud-1.0.6.tar.gz", "https://www.x.org/archive/individual/app/xwud-1.0.5.tar.gz", "https://www.x.org/archive/individual/app/xwud-1.0.4.tar.gz" ], "homepages": [ "https://gitlab.freedesktop.org/xorg/app/xwud" ], "licenses": [], "maintainers": [], "name": "xwud", "patches": [], "summary": "xwud allows X users to display in a window an image saved in a specially\nformatted dump file, such as produced by xwd.\n", "version": [ { "downloads": [ "https://www.x.org/archive/individual/app/xwud-1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://www.x.org/archive/individual/app/xwud-1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://www.x.org/archive/individual/app/xwud-1.0.6.tar.gz" ], "version": "1.0.6" } ] }, "xxd": { "alias": [ { "alias_for": "xxd-standalone", "name": "xxd" } ], "categories": [], "dependencies": [ "c", "cxx", "gmake" ], "downloads": [ "https://github.com/vim/vim/archive/v8.2.1201.tar.gz" ], "homepages": [ "https://www.vim.org/" ], "licenses": [ "Vim" ], "maintainers": [ "haampie" ], "name": "xxd-standalone", "patches": [], "summary": "xxd creates a hex dump of a given file or standard input. It is bundled\nwith vim, but as xxd is used in build scripts, it makes sense to have it\navailable as a standalone package.\n", "version": [ { "downloads": [ "https://github.com/vim/vim/archive/v8.2.1201.tar.gz" ], "version": "8.2.1201" } ] }, "xxd-standalone": { "alias": [ { "alias_for": "xxd-standalone", "name": "xxd" } ], "categories": [], "dependencies": [ "c", "cxx", "gmake" ], "downloads": [ "https://github.com/vim/vim/archive/v8.2.1201.tar.gz" ], "homepages": [ "https://www.vim.org/" ], "licenses": [ "Vim" ], "maintainers": [ "haampie" ], "name": "xxd-standalone", "patches": [], "summary": "xxd creates a hex dump of a given file or standard input. It is bundled\nwith vim, but as xxd is used in build scripts, it makes sense to have it\navailable as a standalone package.\n", "version": [ { "downloads": [ "https://github.com/vim/vim/archive/v8.2.1201.tar.gz" ], "version": "8.2.1201" } ] }, "xxdiff": { "alias": [], "categories": [], "dependencies": [ "bison", "c", "cxx", "flex", "gmake", "qt" ], "downloads": [ "https://github.com/blais/xxdiff.git" ], "homepages": [ "https://furius.ca/xxdiff/" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [ "vanderwb" ], "name": "xxdiff", "patches": [], "summary": "Graphical File And Directories Comparator And Merge Tool.\n", "version": [ { "repositories": [ { "commit": "604300ea9875611726ba885fb14f872b964df579", "type": "git", "url": "https://github.com/blais/xxdiff.git" } ], "version": "2023-01-10" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/blais/xxdiff.git" } ], "version": "master" } ] }, "xxhash": { "alias": [], "categories": [], "dependencies": [ "c", "cxx", "gmake" ], "downloads": [ "https://github.com/Cyan4973/xxHash/archive/v0.8.3.tar.gz", "https://github.com/Cyan4973/xxHash/archive/v0.8.2.tar.gz", "https://github.com/Cyan4973/xxHash/archive/v0.8.1.tar.gz", "https://github.com/Cyan4973/xxHash/archive/v0.8.0.tar.gz", "https://github.com/Cyan4973/xxHash/archive/v0.7.4.tar.gz", "https://github.com/Cyan4973/xxHash/archive/v0.6.5.tar.gz", "https://github.com/Cyan4973/xxHash/archive/v0.6.4.tar.gz", "https://github.com/Cyan4973/xxHash/archive/v0.6.3.tar.gz", "https://github.com/Cyan4973/xxHash/archive/v0.6.2.tar.gz", "https://github.com/Cyan4973/xxHash/archive/v0.6.1.tar.gz", "https://github.com/Cyan4973/xxHash/archive/v0.6.0.tar.gz", "https://github.com/Cyan4973/xxHash/archive/v0.5.1.tar.gz", "https://github.com/Cyan4973/xxHash/archive/v0.5.0.tar.gz" ], "homepages": [ "https://github.com/Cyan4973/xxHash" ], "licenses": [ "BSD-2-Clause" ], "maintainers": [], "name": "xxhash", "patches": [], "summary": "xxHash is an Extremely fast Hash algorithm, running at RAM speed limits.\nIt successfully completes the SMHasher test suite which evaluates\ncollision, dispersion and randomness qualities of hash functions. Code\nis highly portable, and hashes are identical on all platforms (little /\nbig endian).\n", "version": [ { "downloads": [ "https://github.com/Cyan4973/xxHash/archive/v0.5.0.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://github.com/Cyan4973/xxHash/archive/v0.5.1.tar.gz" ], "version": "0.5.1" }, { "downloads": [ "https://github.com/Cyan4973/xxHash/archive/v0.6.0.tar.gz" ], "version": "0.6.0" }, { "downloads": [ "https://github.com/Cyan4973/xxHash/archive/v0.6.1.tar.gz" ], "version": "0.6.1" }, { "downloads": [ "https://github.com/Cyan4973/xxHash/archive/v0.6.2.tar.gz" ], "version": "0.6.2" }, { "downloads": [ "https://github.com/Cyan4973/xxHash/archive/v0.6.3.tar.gz" ], "version": "0.6.3" }, { "downloads": [ "https://github.com/Cyan4973/xxHash/archive/v0.6.4.tar.gz" ], "version": "0.6.4" }, { "downloads": [ "https://github.com/Cyan4973/xxHash/archive/v0.6.5.tar.gz" ], "version": "0.6.5" }, { "downloads": [ "https://github.com/Cyan4973/xxHash/archive/v0.7.4.tar.gz" ], "version": "0.7.4" }, { "downloads": [ "https://github.com/Cyan4973/xxHash/archive/v0.8.0.tar.gz" ], "version": "0.8.0" }, { "downloads": [ "https://github.com/Cyan4973/xxHash/archive/v0.8.1.tar.gz" ], "version": "0.8.1" }, { "downloads": [ "https://github.com/Cyan4973/xxHash/archive/v0.8.2.tar.gz" ], "version": "0.8.2" }, { "downloads": [ "https://github.com/Cyan4973/xxHash/archive/v0.8.3.tar.gz" ], "version": "0.8.3" } ] }, "xyce": { "alias": [], "categories": [ "e4s" ], "dependencies": [ "adms", "armpl-gcc", "bison", "blas", "blis", "c", "clblast", "cmake", "cxx", "fftw", "flex", "fortran", "gmake", "intel-oneapi-mkl", "mpi", "netlib-lapack", "ninja", "openblas", "py-pip", "py-pybind11", "python", "python-venv", "trilinos", "veclibfort" ], "downloads": [ "https://github.com/Xyce/Xyce/archive/Release-master.tar.gz", "https://github.com/Xyce/Xyce/archive/Release-7.10.0.tar.gz", "https://github.com/Xyce/Xyce/archive/Release-7.9.0.tar.gz", "https://github.com/Xyce/Xyce/archive/Release-7.8.0.tar.gz", "https://github.com/Xyce/Xyce/archive/Release-7.7.0.tar.gz", "https://github.com/Xyce/Xyce.git" ], "homepages": [ "https://xyce.sandia.gov" ], "licenses": [ "GPL-3.0-or-later" ], "maintainers": [ "kuberry", "tbird2001" ], "name": "xyce", "patches": [ "https://github.com/Xyce/Xyce/commit/47d9dd04ec55cd8722cb3704a88beb228dfcf363.patch?full_index=1 when @:7.7", "454-cmake-xyce.patch" ], "summary": "Xyce (rhymes with 'spice') is an open source, SPICE-compatible, high-\nperformance analog circuit simulator, Xyce supports the standard\nanalysis capabilities found in other SPICE-like codes, such as DC,\ntransient, AC, and small-signal noise analyses; it also has less common\ncapabilities, such as harmonic balance, sensitivity analysis, and\nuncertainty propagation techniques. Xyce supplies industry-standard\ncompact models and can support custom models via its Verilog-A model\ncompiler. Foundry process-development kits (PDKs) in other SPICE syntax\ncan be used via the XDM netlist translator, which is included as part of\nthe Xyce package. In addition to supporting use on all common desktop\nplatforms (Mac, Windows, Linux), Xyce can also be compiled to run in a\nlarge-scale parallel mode to provide scalable, numerically accurate\nanalog simulation of circuits containing millions of devices, or more.\n", "version": [ { "downloads": [ "https://github.com/Xyce/Xyce/archive/Release-7.10.0.tar.gz" ], "version": "7.10.0" }, { "downloads": [ "https://github.com/Xyce/Xyce/archive/Release-7.7.0.tar.gz" ], "version": "7.7.0" }, { "downloads": [ "https://github.com/Xyce/Xyce/archive/Release-7.8.0.tar.gz" ], "version": "7.8.0" }, { "downloads": [ "https://github.com/Xyce/Xyce/archive/Release-7.9.0.tar.gz" ], "version": "7.9.0" }, { "branch": "master", "repositories": [ { "branch": "master", "type": "git", "url": "https://github.com/Xyce/Xyce.git" } ], "version": "master" } ] }, "xz": { "alias": [], "categories": [ "detectable" ], "dependencies": [ "c", "gmake", "gnuconfig" ], "downloads": [ "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.6.3.tar.bz2", "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.6.2.tar.bz2", "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.4.7.tar.bz2", "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.4.6.tar.bz2", "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.4.5.tar.bz2", "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.4.1.tar.bz2", "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.2.10.tar.bz2", "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.2.7.tar.bz2", "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.2.6.tar.bz2", "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.2.5.tar.bz2", "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.2.4.tar.bz2", "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.2.3.tar.bz2", "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.2.2.tar.bz2", "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.2.1.tar.bz2", "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.2.0.tar.bz2" ], "homepages": [ "https://tukaani.org/xz/" ], "licenses": [ "GPL-2.0-or-later AND Public-Domain AND LGPL-2.1-or-later" ], "maintainers": [ "AlexanderRichert-NOAA" ], "name": "xz", "patches": [ "nvhpc.patch when @5.2.10: %nvhpc" ], "summary": "XZ Utils is free general-purpose data compression software with high\ncompression ratio. XZ Utils were written for POSIX-like systems, but\nalso work on some not-so-POSIX systems. XZ Utils are the successor to\nLZMA Utils.\n", "version": [ { "downloads": [ "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.2.0.tar.bz2" ], "version": "5.2.0" }, { "downloads": [ "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.2.1.tar.bz2" ], "version": "5.2.1" }, { "downloads": [ "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.2.10.tar.bz2" ], "version": "5.2.10" }, { "downloads": [ "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.2.2.tar.bz2" ], "version": "5.2.2" }, { "downloads": [ "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.2.3.tar.bz2" ], "version": "5.2.3" }, { "downloads": [ "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.2.4.tar.bz2" ], "version": "5.2.4" }, { "downloads": [ "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.2.5.tar.bz2" ], "version": "5.2.5" }, { "downloads": [ "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.2.6.tar.bz2" ], "version": "5.2.6" }, { "downloads": [ "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.2.7.tar.bz2" ], "version": "5.2.7" }, { "downloads": [ "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.4.1.tar.bz2" ], "version": "5.4.1" }, { "downloads": [ "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.4.5.tar.bz2" ], "version": "5.4.5" }, { "downloads": [ "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.4.6.tar.bz2" ], "version": "5.4.6" }, { "downloads": [ "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.4.7.tar.bz2" ], "version": "5.4.7" }, { "downloads": [ "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.6.2.tar.bz2" ], "version": "5.6.2" }, { "downloads": [ "https://prdownloads.sourceforge.net/lzmautils/files/xz-5.6.3.tar.bz2" ], "version": "5.6.3" } ] }, "yacc": { "alias": [ { "alias_for": "byacc", "name": "yacc" } ], "categories": [], "dependencies": [ "autoconf", "automake", "gmake", "gnuconfig", "libtool", "m4" ], "downloads": [ "ftp://ftp.invisible-island.net/pub/byacc/byacc-20210808.tgz" ], "homepages": [ "https://invisible-island.net/byacc/byacc.html" ], "licenses": [ "Public-Domain" ], "maintainers": [], "name": "byacc", "patches": [], "summary": "Berkeley Yacc is an LALR(1) parser generator. Berkeley Yacc has been\nmade as compatible as possible with AT&T Yacc. Berkeley Yacc can accept\nany input specification that conforms to the AT&T Yacc documentation.\nSpecifications that take advantage of undocumented features of AT&T Yacc\nwill probably be rejected.\n", "version": [ { "downloads": [ "ftp://ftp.invisible-island.net/pub/byacc/byacc-20210808.tgz" ], "version": "20210808" } ] }, "yade": { "alias": [], "categories": [], "dependencies": [ "boost", "cmake", "cxx", "eigen", "freeglut", "gcc", "gdb", "gmake", "libqglviewer", "ninja", "py-ipython", "py-matplotlib", "py-numpy", "py-sphinx", "python", "qt", "sqlite" ], "downloads": [ "https://gitlab.com/yade-dev/trunk/-/archive/2023.02a/trunk-2023.02a.tar.gz", "https://gitlab.com/yade-dev/trunk/-/archive/2022.01a/trunk-2022.01a.tar.gz", "https://gitlab.com/yade-dev/trunk/-/archive/2021.01a/trunk-2021.01a.tar.gz", "https://gitlab.com/yade-dev/trunk/-/archive/2020.01a/trunk-2020.01a.tar.gz", "https://gitlab.com/yade-dev/trunk/-/archive/2019.01a/trunk-2019.01a.tar.gz", "https://gitlab.com/yade-dev/trunk/-/archive/2018.02b/trunk-2018.02b.tar.gz", "https://gitlab.com/yade-dev/trunk/-/archive/2018.02a/trunk-2018.02a.tar.gz", "https://gitlab.com/yade-dev/trunk/-/archive/2017.01a/trunk-2017.01a.tar.gz", "https://gitlab.com/yade-dev/trunk/-/archive/2016.06a/trunk-2016.06a.tar.gz" ], "homepages": [ "https://gitlab.com/yade-dev/trunk" ], "licenses": [ "GPL-2.0-only" ], "maintainers": [ "lmagdanello" ], "name": "yade", "patches": [], "summary": "Yade is an free software for particle based simulations.\n", "version": [ { "downloads": [ "https://gitlab.com/yade-dev/trunk/-/archive/2016.06a/trunk-2016.06a.tar.gz" ], "version": "2016.06a" }, { "downloads": [ "https://gitlab.com/yade-dev/trunk/-/archive/2017.01a/trunk-2017.01a.tar.gz" ], "version": "2017.01a" }, { "downloads": [ "https://gitlab.com/yade-dev/trunk/-/archive/2018.02a/trunk-2018.02a.tar.gz" ], "version": "2018.02a" }, { "downloads": [ "https://gitlab.com/yade-dev/trunk/-/archive/2018.02b/trunk-2018.02b.tar.gz" ], "version": "2018.02b" }, { "downloads": [ "https://gitlab.com/yade-dev/trunk/-/archive/2019.01a/trunk-2019.01a.tar.gz" ], "version": "2019.01a" }, { "downloads": [ "https://gitlab.com/yade-dev/trunk/-/archive/2020.01a/trunk-2020.01a.tar.gz" ], "version": "2020.01a" }, { "downloads": [ "https://gitlab.com/yade-dev/trunk/-/archive/2021.01a/trunk-2021.01a.tar.gz" ], "version": "2021.01a" }, { "downloads": [ "https://gitlab.com/yade-dev/trunk/-/archive/2022.01a/trunk-2022.01a.tar.gz" ], "version": "2022.01a" }, { "downloads": [ "https://gitlab.com/yade-dev/trunk/-/archive/2023.02a/trunk-2023.02a.tar.gz" ], "version": "2023.02a" } ] }, "yafyaml": { "alias": [], "categories": [], "dependencies": [ "c", "cmake", "fortran", "gcc", "gftl", "gftl-shared", "gmake", "ninja" ], "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/vmain.tar.gz", 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"https://github.com/Goddard-Fortran-Ecosystem/yaFyaml" ], "licenses": [ "Apache-2.0" ], "maintainers": [ "mathomp4", "tclune" ], "name": "yafyaml", "patches": [], "summary": " yet another Fortran (implementation of) YAML There is at least one\nother open source Fortran-based YAML parser. The rationale for this one\nis simply to be compatible with the containers in gFTL. It is not\nintended to be a complete YAML parser, just the subset needed by my own\nprojects.\n", "version": [ { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/v0.5.0.tar.gz" ], "version": "0.5.0" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/v0.5.1.tar.gz" ], "version": "0.5.1" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/v1.0-beta4.tar.gz" ], "version": "1.0-beta4" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/v1.0-beta5.tar.gz" ], "version": "1.0-beta5" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/v1.0-beta6.tar.gz" ], "version": "1.0-beta6" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/v1.0-beta7.tar.gz" ], "version": "1.0-beta7" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/v1.0-beta8.tar.gz" ], "version": "1.0-beta8" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/v1.0.0.tar.gz" ], "version": "1.0.0" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/v1.0.1.tar.gz" ], "version": "1.0.1" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/v1.0.2.tar.gz" ], "version": "1.0.2" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/v1.0.3.tar.gz" ], "version": "1.0.3" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/v1.0.4.tar.gz" ], "version": "1.0.4" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/v1.0.5.tar.gz" ], "version": "1.0.5" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/v1.0.6.tar.gz" ], "version": "1.0.6" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/v1.0.7.tar.gz" ], "version": "1.0.7" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/v1.1.0.tar.gz" ], "version": "1.1.0" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/v1.2.0.tar.gz" ], "version": "1.2.0" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/v1.3.0.tar.gz" ], "version": "1.3.0" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/v1.4.0.tar.gz" ], "version": "1.4.0" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/v1.5.1.tar.gz" ], "version": "1.5.1" }, { "downloads": [ "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml/archive/refs/tags/v1.6.0.tar.gz" ], "version": "1.6.0" }, { "branch": "main", "repositories": [ { "branch": "main", "type": "git", "url": "https://github.com/Goddard-Fortran-Ecosystem/yaFyaml.git" } ], "version": "main" } ] }, "yajl": { "alias": [], "categories": [], "dependencies": [ "cmake", "gmake", "ninja" ], "downloads": [ "https://github.com/lloyd/yajl/archive/refs/tags/develop.zip", "https://github.com/lloyd/yajl/archive/refs/tags/2.1.0.zip", "https://github.com/lloyd/yajl.git" ], "homepages": [ "https://lloyd.github.io/yajl/" ], "licenses": [ "MIT" ], "maintainers": [], "name": "yajl", "patches": [], "summary": "Yet Another JSON Library (YAJL)\n", "version": [ { "downloads": [ "https://github.com/lloyd/yajl/archive/refs/tags/2.1.0.zip" ], "version": "2.1.0" }, { "branch": "develop", "repositories": [ { "branch": "develop", "type": "git", "url": "https://github.com/lloyd/yajl.git" } ], "version": "develop" } ] }, "yaksa": { "alias": [], "categories": [], "dependencies": [ "autoconf", "automake", "c", "cuda", "gmake", "gnuconfig", "hip", "hsa-rocr-dev", "libtool", "llvm-amdgpu", "m4", "python" ], "downloads": [ "https://github.com/pmodels/yaksa/archive/refs/tags/v0.4.tar.gz", "https://github.com/pmodels/yaksa/archive/refs/tags/v0.3.tar.gz", "https://github.com/pmodels/yaksa/archive/refs/tags/v0.2.tar.gz" ], "homepages": [ "https://www.yaksa.org" ], "licenses": [], "maintainers": [ "hzhou", "raffenet", "yfguo" ], "name": "yaksa", "patches": [ "https://github.com/pmodels/yaksa/commit/5ebbadb7771d194f3819e3dd1ac8b5b467024afb.patch?full_index=1 when @0.3+rocm ^hip@6:" ], "summary": "Yaksa is a high-performance datatype engine for expressing, managing and\nmanipulating data present in noncontiguous memory regions. It provides\nportable abstractions for structured noncontiguous data layouts that are\nmuch more comprehensive compared with traditional I/O vectors. Yaksa\nimitates parts of the MPI Datatype system, but adds additional\nfunctionality that would allow it to be used independent of MPI. It\nprovides routines for packing/unpacking, creating I/O vectors (array of\ncontiguous segments) and flattening/unflattening datatypes into process-\nportable formats. Yaksa's backend includes support for CPUs as well as\ndifferent GPUs.\n", "version": [ { "downloads": [ "https://github.com/pmodels/yaksa/archive/refs/tags/v0.2.tar.gz" ], "version": "0.2" }, { "downloads": [ "https://github.com/pmodels/yaksa/archive/refs/tags/v0.3.tar.gz" ], "version": "0.3" }, { "downloads": [ "https://github.com/pmodels/yaksa/archive/refs/tags/v0.4.tar.gz" ], "version": "0.4" } ] }, "yambo": { "alias": [], "categories": [], "dependencies": [ "blas", "c", "etsf-io", "fftw", "fortran", "gmake", "gnuconfig", "hdf5", "lapack", "libxc", "mpi", "netcdf-c", "netcdf-fortran", "scalapack" ], "downloads": [ "https://github.com/yambo-code/yambo/archive/5.2.4.tar.gz", "https://github.com/yambo-code/yambo/archive/5.2.3.tar.gz", "https://github.com/yambo-code/yambo/archive/5.2.1.tar.gz", "https://github.com/yambo-code/yambo/archive/5.1.1.tar.gz", "https://github.com/yambo-code/yambo/archive/4.2.2.tar.gz", "https://github.com/yambo-code/yambo/archive/4.2.1.tar.gz", "https://github.com/yambo-code/yambo/archive/4.2.0.tar.gz" ], "homepages": [ "https://www.yambo-code.org/index.php" ], "licenses": [ "GPL-2.0-or-later" ], "maintainers": [ "LydDeb" ], "name": "yambo", "patches": [], "summary": "Yambo is a FORTRAN/C code for Many-Body calculations in solid state and\nmolecular physics. Yambo relies on the Kohn-Sham wavefunctions generated\nby two DFT public codes: abinit, and PWscf. The code was originally\ndeveloped in the Condensed Matter Theoretical Group of the Physics\nDepartment at the University of Rome \"Tor Vergata\" by Andrea Marini.\nPrevious to its release under the GPL license, yambo was known as SELF.\n", "version": [ { "downloads": [ "https://github.com/yambo-code/yambo/archive/4.2.0.tar.gz" ], "version": "4.2.0" }, { "downloads": [ "https://github.com/yambo-code/yambo/archive/4.2.1.tar.gz" ], "version": "4.2.1" }, { "downloads": [ "https://github.com/yambo-code/yambo/archive/4.2.2.tar.gz" ], "version": "4.2.2" }, { "downloads": [ "https://github.com/yambo-code/yambo/archive/5.1.1.tar.gz" ], "version": "5.1.1" }, { "downloads": [ "https://github.com/yambo-code/yambo/archive/5.2.1.tar.gz" ], "version": "5.2.1" }, { "downloads": [ "https://github.com/yambo-code/yambo/archive/5.2.3.tar.gz" ], "version": "5.2.3" }, { "downloads": [ "https://github.com/yambo-code/yambo/archive/5.2.4.tar.gz" ], "version": "5.2.4" } ] }, "yaml-cpp": { "alias": [], 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