# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other # Spack Project Developers. See the top-level COPYRIGHT file for details. # # SPDX-License-Identifier: (Apache-2.0 OR MIT) from collections import defaultdict from spack.package import * from spack.util.environment import is_system_path class Cdo(AutotoolsPackage): """CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data. """ homepage = "https://code.mpimet.mpg.de/projects/cdo" url = "https://code.mpimet.mpg.de/attachments/download/12760/cdo-1.7.2.tar.gz" list_url = "https://code.mpimet.mpg.de/projects/cdo/files" maintainers("skosukhin", "Try2Code") version( "2.4.0", sha256="a4790fb8cc07f353b11f9bbe49218b8e4be8e5ae56aade8420bad390510b4d2c", url="https://code.mpimet.mpg.de/attachments/download/29313/cdo-2.4.0.tar.gz", ) version( "2.3.0", sha256="10c878227baf718a6917837527d4426c2d0022cfac4457c65155b9c57f091f6b", url="https://code.mpimet.mpg.de/attachments/download/29019/cdo-2.3.0.tar.gz", ) version( "2.2.2", sha256="419c77315244019af41a296c05066f474cccbf94debfaae9e2106da51bc7c937", url="https://code.mpimet.mpg.de/attachments/download/28882/cdo-2.2.2.tar.gz", ) version( "2.2.0", sha256="679c8d105706caffcba0960ec5ddc4a1332c1b40c52f82c3937356999d8fadf2", url="https://code.mpimet.mpg.de/attachments/download/28013/cdo-2.2.0.tar.gz", ) version( "2.1.1", sha256="c29d084ccbda931d71198409fb2d14f99930db6e7a3654b3c0243ceb304755d9", url="https://code.mpimet.mpg.de/attachments/download/27654/cdo-2.1.1.tar.gz", ) version( "2.1.0", sha256="b871346c944b05566ab21893827c74616575deaad0b20eacb472b80b1fa528cc", url="https://code.mpimet.mpg.de/attachments/download/27481/cdo-2.1.0.tar.gz", ) version( "2.0.6", sha256="ef120dea9032b1be80a4cfa201958c3b910107205beb6674195675f1ee8ed402", url="https://code.mpimet.mpg.de/attachments/download/27276/cdo-2.0.6.tar.gz", ) version( "2.0.5", sha256="edeebbf1c3b1a1f0c642dae6bc8c7624e0c54babe461064dc5c7daca4a5b0dce", url="https://code.mpimet.mpg.de/attachments/download/26823/cdo-2.0.5.tar.gz", ) version( "2.0.4", sha256="73c0c1e5348632e6e8452ea8e617c35499bc55c845ee2c1d42b912a7e00e5533", url="https://code.mpimet.mpg.de/attachments/download/26761/cdo-2.0.4.tar.gz", ) version( "2.0.3", sha256="25520260ccb4e5324c27fa2160dfafc8152b180dd7f0133bd80425df3ef7c65a", url="https://code.mpimet.mpg.de/attachments/download/26676/cdo-2.0.3.tar.gz", ) version( "2.0.2", sha256="34dfdd0d4126cfd35fc69e37e60901c8622d13ec5b3fa5f0fe6a1cc866cc5a70", url="https://code.mpimet.mpg.de/attachments/download/26654/cdo-2.0.2.tar.gz", ) version( "2.0.1", sha256="d0794d261e22efa0adac8e6d18de2b60d54de5e1a4df6127c65fc417feb8fdac", url="https://code.mpimet.mpg.de/attachments/download/26477/cdo-2.0.1.tar.gz", ) version( "2.0.0", sha256="6bca54e9d69d8c1f072f1996547b7347a65743d15ba751967e9bb16e0ff7a843", url="https://code.mpimet.mpg.de/attachments/download/26370/cdo-2.0.0.tar.gz", ) version( "1.9.10", sha256="cc39c89bbb481d7b3945a06c56a8492047235f46ac363c4f0d980fccdde6677e", url="https://code.mpimet.mpg.de/attachments/download/24638/cdo-1.9.10.tar.gz", ) version( "1.9.9", sha256="959b5b58f495d521a7fd1daa84644888ec87d6a0df43f22ad950d17aee5ba98d", url="https://code.mpimet.mpg.de/attachments/download/23323/cdo-1.9.9.tar.gz", ) version( "1.9.8", sha256="f2660ac6f8bf3fa071cf2a3a196b3ec75ad007deb3a782455e80f28680c5252a", url="https://code.mpimet.mpg.de/attachments/download/20826/cdo-1.9.8.tar.gz", ) version( "1.9.7.1", sha256="3771952e065bcf935d43e492707370ed2a0ecb59a06bea24f9ab69d77943962c", url="https://code.mpimet.mpg.de/attachments/download/20124/cdo-1.9.7.1.tar.gz", ) version( "1.9.6", sha256="b31474c94548d21393758caa33f35cf7f423d5dfc84562ad80a2bdcb725b5585", url="https://code.mpimet.mpg.de/attachments/download/19299/cdo-1.9.6.tar.gz", ) version( "1.9.5", sha256="48ed65cc5b436753c8e7f9eadd8aa97376698ce230ceafed2a4350a5b1a27148", url="https://code.mpimet.mpg.de/attachments/download/18264/cdo-1.9.5.tar.gz", ) version( "1.9.4", sha256="3d1c0fd3f7d38c5d3d88139ca1546c9d24e1b1ff752a794a4194dfe624695def", url="https://code.mpimet.mpg.de/attachments/download/17374/cdo-1.9.4.tar.gz", ) version( "1.9.3", sha256="e83a3de7b402600c0d9a5df18073d36d133ff9719d3c561a0efa90f9c1599f3f", url="https://code.mpimet.mpg.de/attachments/download/16435/cdo-1.9.3.tar.gz", ) version( "1.9.2", sha256="d1c5092167034a48e4b8ada24cf78a1d4b84e364ffbb08b9ca70d13f428f300c", url="https://code.mpimet.mpg.de/attachments/download/16035/cdo-1.9.2.tar.gz", ) version( "1.9.1", sha256="33cba3cfcc27e5896769143c5f8e2f300ca14c7a40d1f19ffd1ed24b49ea3d55", url="https://code.mpimet.mpg.de/attachments/download/15653/cdo-1.9.1.tar.gz", ) version( "1.9.0", sha256="df367f8c3abf4ab085bcfc61e0205b28a5ecc69b7b83ba398b4d3c874dd69008", url="https://code.mpimet.mpg.de/attachments/download/15187/cdo-1.9.0.tar.gz", ) version( "1.8.2", sha256="6ca6c1263af2237737728ac937a275f8aa27680507636a6b6320f347c69a369a", url="https://code.mpimet.mpg.de/attachments/download/14686/cdo-1.8.2.tar.gz", ) version( "1.7.2", sha256="4c43eba7a95f77457bfe0d30fb82382b3b5f2b0cf90aca6f0f0a008f6cc7e697", url="https://code.mpimet.mpg.de/attachments/download/12760/cdo-1.7.2.tar.gz", ) variant("netcdf", default=True, description="Enable NetCDF support") variant( "grib2", default="eccodes", values=("eccodes", "grib-api", "none"), description="Specify GRIB2 backend", ) variant( "external-grib1", default=False, description="Ignore the built-in support and use the external " "GRIB2 backend for GRIB1 files", ) variant("szip", default=True, description="Enable szip compression for GRIB1") variant("hdf5", default=True, description="Enable HDF5 support") variant("udunits2", default=True, description="Enable UDUNITS2 support") variant("libxml2", default=True, description="Enable libxml2 support") variant("proj", default=True, description="Enable PROJ library for cartographic projections") variant("curl", default=False, description="Enable curl support") variant("fftw3", default=True, description="Enable support for fftw3") variant("magics", default=False, description="Enable Magics library support") variant("openmp", default=True, description="Enable OpenMP support") depends_on("pkgconfig", type="build") depends_on("netcdf-c", when="+netcdf") # The internal library of CDO implicitly links to hdf5. # We also need the backend of netcdf to be thread safe. depends_on("hdf5+threadsafe", when="+netcdf") # Same in case hdf5 is used in the frontend depends_on("hdf5+threadsafe", when="+hdf5") depends_on("grib-api", when="grib2=grib-api") depends_on("eccodes", when="grib2=eccodes") depends_on("szip", when="+szip") depends_on("udunits", when="+udunits2") depends_on("libxml2", when="+libxml2") depends_on("proj@:5", when="@:1.9.6+proj") depends_on("proj@:7", when="@1.9.7+proj") depends_on("proj@5:", when="@1.9.8:+proj") depends_on("curl", when="+curl") depends_on("fftw-api@3:", when="+fftw3") depends_on("magics", when="+magics") depends_on("uuid") conflicts( "+szip", when="+external-grib1 grib2=none", msg="The configuration does not support GRIB1" ) conflicts("%gcc@9:", when="@:1.9.6", msg="GCC 9 changed OpenMP data sharing behavior") def configure_args(self): config_args = [] flags = defaultdict(list) def yes_or_prefix(spec_name): prefix = self.spec[spec_name].prefix return "yes" if is_system_path(prefix) else prefix if "+netcdf" in self.spec: config_args.append("--with-netcdf=" + yes_or_prefix("netcdf-c")) # We need to make sure that the libtool script of libcdi - the # internal library of CDO - finds the correct version of hdf5. # Note that the argument of --with-hdf5 is not passed to the # configure script of libcdi, therefore we have to provide # additional flags regardless of whether hdf5 support is enabled. hdf5_spec = self.spec["hdf5"] if not is_system_path(hdf5_spec.prefix): flags["LDFLAGS"].append(self.spec["hdf5"].libs.search_flags) else: config_args.append("--without-netcdf") if self.spec.variants["grib2"].value == "eccodes": if self.spec.satisfies("@1.9:"): config_args.append("--with-eccodes=" + yes_or_prefix("eccodes")) config_args.append("--without-grib_api") else: config_args.append("--with-grib_api=yes") eccodes_spec = self.spec["eccodes"] eccodes_libs = eccodes_spec.libs flags["LIBS"].append(eccodes_libs.link_flags) if not is_system_path(eccodes_spec.prefix): flags["LDFLAGS"].append(eccodes_libs.search_flags) elif self.spec.variants["grib2"].value == "grib-api": config_args.append("--with-grib_api=" + yes_or_prefix("grib-api")) if self.spec.satisfies("@1.9:"): config_args.append("--without-eccodes") else: config_args.append("--without-grib_api") if self.spec.satisfies("@1.9:"): config_args.append("--without-eccodes") if "+external-grib1" in self.spec: config_args.append("--disable-cgribex") else: config_args.append("--enable-cgribex") if "+szip" in self.spec: config_args.append("--with-szlib=" + yes_or_prefix("szip")) else: config_args.append("--without-szlib") config_args += self.with_or_without("hdf5", activation_value=yes_or_prefix) config_args += self.with_or_without( "udunits2", activation_value=lambda x: yes_or_prefix("udunits") ) if "+libxml2" in self.spec: libxml2_spec = self.spec["libxml2"] if is_system_path(libxml2_spec.prefix): config_args.append("--with-libxml2=yes") # Spack does not inject the header search flag in this case, # which is still required, unless libxml2 is installed to '/usr' # (handled by the configure script of CDO). if libxml2_spec.prefix != "/usr": flags["CPPFLAGS"].append(libxml2_spec.headers.include_flags) else: config_args.append("--with-libxml2=" + libxml2_spec.prefix) else: config_args.append("--without-libxml2") config_args += self.with_or_without("proj", activation_value=yes_or_prefix) config_args += self.with_or_without("curl", activation_value=yes_or_prefix) config_args += self.with_or_without("magics", activation_value=yes_or_prefix) config_args += self.with_or_without("fftw3") config_args += self.enable_or_disable("openmp") # Starting version 1.9.0 CDO is a C++ program but it uses the C # interface of HDF5 without the parallel features. To avoid # unnecessary dependencies on mpi's cxx library, we need to set the # following flags. This works for OpenMPI, MPICH, MVAPICH, Intel MPI, # IBM Spectrum MPI, bullx MPI, and Cray MPI. if self.spec.satisfies("@1.9:+hdf5^hdf5+mpi"): flags["CPPFLAGS"].append("-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX") config_args.extend(["{0}={1}".format(var, " ".join(val)) for var, val in flags.items()]) return config_args