{ "metadata": { "name": "TJGR_OysterGenome_IGV", "signature": "sha256:6f4b4459fd9015d95c576ce7b1bbb83ae612af539d0ead3087d6f2c076b96565" }, "nbformat": 3, "nbformat_minor": 0, "worksheets": [ { "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "#Developing Canonical Tracks for IGV Oyster Genome Browser" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "This is my attempt derive fundamental genomic tracks for the oyster genome that can be easily visualized. \n", "\n", "[render in viewer](http://nbviewer.ipython.org/urls/raw.github.com/sr320/ipython_nb/master/TJGR_OysterGenome_IGV.ipynb)\n", "\n", "\n", "Contents \n", "\n", "- [Launching IGV](#IGV)\n", "- [Loading Core tracks](#cds) -- -- [URLs](#qURL)\n", "- [Gill Tissue Methylation](#gillmeth)\n", "- [Sperm Methylation](#spermmeth)\n", "- [Gill and Sperm gene level expression - RPKM](#rpkm)\n", "\n", "\n", "