{ "metadata": { "name": "", "signature": "sha256:e89fc9bd7d0a7fa01a1ba5518cbae1cc13040ce166fc3453808e6dff23834874" }, "nbformat": 3, "nbformat_minor": 0, "worksheets": [ { "cells": [ { "cell_type": "heading", "level": 1, "metadata": {}, "source": [ "RNA-seq Pipelines" ] }, { "cell_type": "code", "collapsed": false, "input": [ "!date\n", "#v9 for Mac" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "Thu Mar 6 14:31:03 PST 2014\r\n" ] } ], "prompt_number": 2 }, { "cell_type": "heading", "level": 2, "metadata": {}, "source": [ "IPlant Model : Ensembl Genome" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Genome = Crassostrea_gigas.GCA_000297895.1.21.dna_rm.toplevel.fa \n", "GTF = Crassostrea_gigas.GCA_000297895.1.21.gtf" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "BiGoRNA \n", "- [raw](https://github.com/sr320/qdod/wiki/Roberts-Lab-Raw-Data#wiki-select-genomic-data) \n", "- [BAM](http://de.iplantcollaborative.org/dl/8da35077-89d5-40c7-96cf-660458fec8fa)via Tophat \n", "- [bedgraph](http://eagle.fish.washington.edu/cnidarian/BiGoRNA_genomecov.bedgraph)\n" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Tophat \n", "\n", " /usr/local2/sheldon/tophat_test.pl --align_reads 'serial' --mate-inner-dist '50' --file_query 'BiGillRNA_GACTAAGA_1.fastq' --file_query 'BiGoRNA_GTGTCTAC_1.fastq' --file_query2 'BiGillRNA_GACTAAGA_2.fastq' --file_query2 'BiGoRNA_GTGTCTAC_2.fastq' --library-type 'fr-unstranded' --min-anchor-length '8' --splice-mismatches '0' --min-intron-length '70' --max-intron-length '50000' --min-isoform-fraction '0.15' --max-multihits '20' --min-segment-intron '50' --user_annotation 'Crassostrea_gigas.GCA_000297895.1.21.gtf' --max-segment-intron '500000' --segment-mismatches '2' --segment-length '20' --num-threads '6' --user_database 'Crassostrea_gigas.GCA_000297895.1.21.dna_rm.toplevel.fa' --b2-sensitive --tophat_version '2.0.9' --bowtie_version '2.1.0' 1>" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "bedgraph code\n", "\n", " /usr/local3/bin/bedtools-iplant-1.00/bedtools.pl genomecov -bg -split -ibam 'BiGoRNA_GTGTCTAC_1.bam' -g 'cgigas_E_genome_bt.tab' -output 'bedtools_genomecov_output'" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "BiGillRNA\n", "\n", "- [BAM](http://de.iplantcollaborative.org/dl/c54d6483-29c5-4248-9f4f-fc582f270465) \n", "- [bedgraph](http://eagle.fish.washington.edu/cnidarian/BiGillRNA_genomecov.bedgraph)\n", "\n", "_this bedgraph is ~800 MB_\n" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ " /usr/local3/bin/bedtools-iplant-1.00/bedtools.pl genomecov -bg -split -ibam 'BiGillRNA_GACTAAGA_1.bam' -g 'cgigas_E_genome_bt.tab' -output 'bedtools_genomecov_output' 1> logs/condor-stdout-0 2>" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "---" ] }, { "cell_type": "code", "collapsed": false, "input": [ "#making genome file" ], "language": "python", "metadata": {}, "outputs": [] }, { "cell_type": "code", "collapsed": false, "input": [ "cd /Volumes/web/cnidarian/" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "/Volumes/web/cnidarian\n" ] } ], "prompt_number": 4 }, { "cell_type": "code", "collapsed": false, "input": [ "!iget -t 8da35077-89d5-40c7-96cf-660458fec8fa '/iplant/home/sr320/coge_data/TopHat2-PE_BiGill_BiGo-2014-02-02-09-12-25.697/bam/BiGoRNA_GTGTCTAC_1.bam'" ], "language": "python", "metadata": {}, "outputs": [], "prompt_number": 6 }, { "cell_type": "code", "collapsed": false, "input": [ "!samtools sort /Volumes/web/cnidarian/BiGoRNA_GTGTCTAC_1.bam /Volumes/web/cnidarian/BiGoRNA_GTGTCTAC_1.sorted" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "[bam_sort_core] merging from 18 files...\r\n" ] } ], "prompt_number": 8 }, { "cell_type": "code", "collapsed": false, "input": [ "!head /Volumes/web/whale/ensembl/ftp.ensemblgenomes.org/pub/release-21/metazoa/fasta/crassostrea_gigas/dna/Crassostrea_gigas.GCA_000297895.1.21.dna_sm.genome.fa" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ ">C12728 dna_sm:supercontig supercontig:GCA_000297895.1:C12728:1:200:1\r\n", "TTTTTCTTATTTTTATTTGTACCAGTTAATCCTGTGAgccgcttttatgtctctttctgg\r\n", "ccgtttttatgtctctttctgTTGACTTTATTATTCTCTCATTTATGATTTAACATCTCA\r\n", "TATGAATTATTATGTGTATCTTGCATGGGATATTTTGCCACTTCGTGCCCATAAAAATCA\r\n", "ACACTTGTCTTTCGGTGTAT\r\n", ">C12722 dna_sm:supercontig supercontig:GCA_000297895.1:C12722:1:200:1\r\n", "TAGGGACAGTGTCTATTGCATTAAGGTGAGTGACTGTTTGGGGTTAAACTTAAACAGGTA\r\n", "TGGATAGATTGAGTGTGTGAACATCCCTGCTCTATCTAATCTACGTGTTTTCTAACCTTT\r\n", "GATACAAAGTGTGCGGTCATTCCTGCCCTGTATCGCATTAATACAAGTGTGCAGTCATAC\r\n", "CTGCTTGTATTGGTGGTGGT\r\n" ] } ], "prompt_number": 17 }, { "cell_type": "code", "collapsed": false, "input": [ "!perl -e '$count=0; $len=0; while(<>) {s/\\r?\\n//; s/\\t/ /g; if (s/^>//) { if ($. != 1) {print \"\\n\"} s/ |$/\\t/; $count++; $_ .= \"\\t\";} else {s/ //g; $len += length($_)} print $_;} print \"\\n\"; warn \"\\nConverted $count FASTA records in $. lines to tabular format\\nTotal sequence length: $len\\n\\n\";' /Volumes/web/whale/ensembl/ftp.ensemblgenomes.org/pub/release-21/metazoa/fasta/crassostrea_gigas/dna/Crassostrea_gigas.GCA_000297895.1.21.dna_sm.genome.fa > /Volumes/web/cnidarian/cgigasgenome1.tab" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "\r\n", "Converted 7658 FASTA records in 9306685 lines to tabular format\r\n", "Total sequence length: 557717710\r\n", "\r\n" ] } ], "prompt_number": 13 }, { "cell_type": "code", "collapsed": false, "input": [ "!perl -e '$col = 2;' -e 'while (<>) { s/\\r?\\n//; @F = split /\\t/, $_; $len = length($F[$col]); print \"$_\\t$len\\n\" } warn \"\\nAdded column with length of column $col for $. lines.\\n\\n\";' /Volumes/web/cnidarian/cgigasgenome1.tab > /Volumes/web/cnidarian/cgigasgenome2.tab" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "\r\n", "Added column with length of column 2 for 7658 lines.\r\n", "\r\n" ] } ], "prompt_number": 14 }, { "cell_type": "code", "collapsed": false, "input": [ "!awk '{ print $1,$5 }' /Volumes/web/cnidarian/cgigasgenome2.tab > /Volumes/web/cnidarian/cgigasgenome3.tab" ], "language": "python", "metadata": {}, "outputs": [], "prompt_number": 24 }, { "cell_type": "code", "collapsed": false, "input": [ "!tail /Volumes/web/cnidarian/cgigasgenome3.tab" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "scaffold77 1619719\r\n", "scaffold337 1638316\r\n", "scaffold86 1697160\r\n", "scaffold1532 1715538\r\n", "scaffold419 1725835\r\n", "scaffold102 1727112\r\n", "scaffold1024 1774716\r\n", "scaffold150 1854615\r\n", "scaffold1009 1861391\r\n", "scaffold22 1964558\r\n" ] } ], "prompt_number": 26 }, { "cell_type": "raw", "metadata": {}, "source": [ "!bedtools genomecov -bg -split -ibam /Volumes/web/cnidarian/BiGoRNA_GTGTCTAC_1.sorted.bam -g /Volumes/web/cnidarian/cgigasgenome3.tab > /Volumes/web/cnidarian/BiGoRNA_bg1" ] }, { "cell_type": "code", "collapsed": false, "input": [ "pwd" ], "language": "python", "metadata": {}, "outputs": [ { "metadata": {}, "output_type": "pyout", "prompt_number": 31, "text": [ "u'/Volumes/web/cnidarian'" ] } ], "prompt_number": 31 }, { "cell_type": "code", "collapsed": false, "input": [ "!head /Volumes/web/cnidarian/cgigasgenome3.tab" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "C12728 200\r\n", "C12722 200\r\n", "C12706 200\r\n", "C12718 200\r\n", "C12732 200\r\n", "C12726 200\r\n", "C12708 200\r\n", "C12730 200\r\n", "C12724 200\r\n", "C12734 200\r\n" ] } ], "prompt_number": 32 }, { "cell_type": "code", "collapsed": false, "input": [ "!/Volumes/Bay3/Software/bg/bedGraphToBigWig /Volumes/web/cnidarian/BiGoRNA_bg1_sorted.bedgraph /Volumes/web/cnidarian/cgigasgenome3.tab out.bw" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "Expecting 2 words line 4252 of /Volumes/web/cnidarian/cgigasgenome3.tab got 1\r\n" ] } ], "prompt_number": 44 }, { "cell_type": "code", "collapsed": false, "input": [ "!head /Volumes/web/cnidarian/BiGoRNA_bg1.bedgraph" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "C12722\t142\t192\t1\r\n", "C12738\t40\t90\t2\r\n", "C12738\t94\t144\t13\r\n", "C12738\t149\t199\t3\r\n", "C12748\t98\t113\t1\r\n", "C12748\t113\t163\t2\r\n", "C12748\t163\t198\t1\r\n", "C12758\t28\t37\t1\r\n", "C12758\t37\t38\t2\r\n", "C12758\t38\t87\t3\r\n" ] } ], "prompt_number": 38 }, { "cell_type": "code", "collapsed": false, "input": [ "!sort -k1,1 -k2,2n /Volumes/web/cnidarian/BiGoRNA_bg1.bedgraph > /Volumes/web/cnidarian/BiGoRNA_bg1_sorted.bedgraph" ], "language": "python", "metadata": {}, "outputs": [], "prompt_number": 40 }, { "cell_type": "code", "collapsed": false, "input": [ "!/Volumes/Bay3/Software/bg/bedGraphToBigWig\n" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "bedGraphToBigWig v 4 - Convert a bedGraph file to bigWig format.\r\n", "usage:\r\n", " bedGraphToBigWig in.bedGraph chrom.sizes out.bw\r\n", "where in.bedGraph is a four column file in the format:\r\n", " \r\n", "and chrom.sizes is two column: \r\n", "and out.bw is the output indexed big wig file.\r\n", "Use the script: fetchChromSizes to obtain the actual chrom.sizes information\r\n", "from UCSC, please do not make up a chrom sizes from your own information.\r\n", "The input bedGraph file must be sorted, use the unix sort command:\r\n", " sort -k1,1 -k2,2n unsorted.bedGraph > sorted.bedGraph\r\n", "options:\r\n", " -blockSize=N - Number of items to bundle in r-tree. Default 256\r\n", " -itemsPerSlot=N - Number of data points bundled at lowest level. Default 1024\r\n", " -unc - If set, do not use compression.\r\n" ] } ], "prompt_number": 37 }, { "cell_type": "heading", "level": 1, "metadata": {}, "source": [ "Version 9" ] }, { "cell_type": "code", "collapsed": false, "input": [ "#make genome file" ], "language": "python", "metadata": {}, "outputs": [], "prompt_number": 3 }, { "cell_type": "code", "collapsed": false, "input": [ "!head -2 /Volumes/web/cnidarian/oyster.v9.fa" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ ">scaffold360\r\n", "TATTCATATATCATTGAGAATGACAGTTTAAAACAGGATTTTTAATTGTGTTTAATAGGCGACCAACATTTAAGTGTCATTTGTTGAGTTATAAGCGAGTTAAAAAGCTTGTAGTTCTTCGCTATGGAAACAAAACTTTACATTTTGTTTACATTTCAGTTTTAGACCTCAAATGAATGTTTTTATCGTTAGGAACTGTTTATTTATGCTTTAAATTGATAAGAAGATTGACAAATCAGCTTGAAAAAGATTTTTTACTGGTGTATTGAACCCAGATGTA\r\n" ] } ], "prompt_number": 5 }, { "cell_type": "code", "collapsed": false, "input": [ "!perl -e '$count=0; $len=0; while(<>) {s/\\r?\\n//; s/\\t/ /g; if (s/^>//) { if ($. != 1) {print \"\\n\"} s/ |$/\\t/; $count++; $_ .= \"\\t\";} else {s/ //g; $len += length($_)} print $_;} print \"\\n\"; warn \"\\nConverted $count FASTA records in $. lines to tabular format\\nTotal sequence length: $len\\n\\n\";' /Volumes/web/cnidarian/oyster.v9.fa > /Volumes/web/cnidarian/cgigas_v9_genome01.tab" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "\r\n", "Converted 11969 FASTA records in 23938 lines to tabular format\r\n", "Total sequence length: 558601156\r\n", "\r\n" ] } ], "prompt_number": 6 }, { "cell_type": "code", "collapsed": false, "input": [ "!head -1 /Volumes/web/cnidarian/cgigas_v9_genome01.tab" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "scaffold360\t\tTATTCATATATCATTGAGAATGACAGTTTAAAACAGGATTTTTAATTGTGTTTAATAGGCGACCAACATTTAAGTGTCATTTGTTGAGTTATAAGCGAGTTAAAAAGCTTGTAGTTCTTCGCTATGGAAACAAAACTTTACATTTTGTTTACATTTCAGTTTTAGACCTCAAATGAATGTTTTTATCGTTAGGAACTGTTTATTTATGCTTTAAATTGATAAGAAGATTGACAAATCAGCTTGAAAAAGATTTTTTACTGGTGTATTGAACCCAGATGTA\r\n" ] } ], "prompt_number": 8 }, { "cell_type": "code", "collapsed": false, "input": [ "!perl -e '$col = 2;' -e 'while (<>) { s/\\r?\\n//; @F = split /\\t/, $_; $len = length($F[$col]); print \"$_\\t$len\\n\" } warn \"\\nAdded column with length of column $col for $. lines.\\n\\n\";' /Volumes/web/cnidarian/cgigas_v9_genome01.tab > /Volumes/web/cnidarian/cgigas_v9_genome02.tab" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "\r\n", "Added column with length of column 2 for 11969 lines.\r\n", "\r\n" ] } ], "prompt_number": 9 }, { "cell_type": "code", "collapsed": false, "input": [ "!head -2 /Volumes/web/cnidarian/cgigas_v9_genome02.tab" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "scaffold360\t\tTATTCATATATCATTGAGAATGACAGTTTAAAACAGGATTTTTAATTGTGTTTAATAGGCGACCAACATTTAAGTGTCATTTGTTGAGTTATAAGCGAGTTAAAAAGCTTGTAGTTCTTCGCTATGGAAACAAAACTTTACATTTTGTTTACATTTCAGTTTTAGACCTCAAATGAATGTTTTTATCGTTAGGAACTGTTTATTTATGCTTTAAATTGATAAGAAGATTGACAAATCAGCTTGAAAAAGATTTTTTACTGGTGTATTGAACCCAGATGTA\t280\r\n", "scaffold18356\t\tTTAAACTGGTACAACAGTATATCCAAGAGAAAAAGGACTTTATAAACAATTTAGAACAACATTGTGGGTCGGATCGGAATTCAAGAACACAGGATCCATTGATGGCTTCTACTATGAAGGGCGATACTACCGCTTGGGGTGACGTCAAATACACTCCGTCATCGACAAAATCTCCTGGATTGTATCCATTACAGGAATTGAAGAAATAACTTTCAATGTAAACAATTTACAAAGATATACATATCTTACGTGAATATCTGGCATGGAAACAACACCTACATGATAGAATAAGACAATATTTCCTACGATACATCCATGGGACATGAAGAAAGTGAAACAGTGTATATCCATATTTAAATTATTATTATAACCGTGTAATCCAAAATGAATTTTATTCCTTCTCATCAGTAAGTACACTGAAAATTGACTACTAAGAAGAGGAAAACACAGAAACGCTAGTTACAACCGATGACCGTTATGAACATAATGCGATTATTTCAGTGAACCGTGTATTAGTGATTTCCTATGTAGGAAGGATTAATATAATTTGCTTCCTATTAGTGTAAT\t567\r\n" ] } ], "prompt_number": 10 }, { "cell_type": "code", "collapsed": false, "input": [ "!awk '{ print $1,$3 }' /Volumes/web/cnidarian/cgigas_v9_genome02.tab > /Volumes/web/cnidarian/cgigas_v9_genome03.tab" ], "language": "python", "metadata": {}, "outputs": [], "prompt_number": 14 }, { "cell_type": "code", "collapsed": false, "input": [ "!head -2 /Volumes/web/cnidarian/cgigas_v9_genome03.tab" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "scaffold360 280\r\n", "scaffold18356 567\r\n" ] } ], "prompt_number": 15 }, { "cell_type": "markdown", "metadata": {}, "source": [ "Running RNAseq2bedgraph on iplant with G3.\n", "Sequenced reads were generated from the female gonad of an individual of \"G3\" family in Crassostrea gigas." ] }, { "cell_type": "heading", "level": 4, "metadata": {}, "source": [ "data check in IGV" ] }, { "cell_type": "code", "collapsed": false, "input": [ "pwd" ], "language": "python", "metadata": {}, "outputs": [ { "metadata": {}, "output_type": "pyout", "prompt_number": 18, "text": [ "u'/Volumes/web/cnidarian'" ] } ], "prompt_number": 18 }, { "cell_type": "code", "collapsed": false, "input": [ "!iget -h" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "Usage: iget [-fIKPQrUvVT] [-n replNumber] [-N numThreads] [-X restartFile]\r\n", "[-R resource] [--lfrestart lfRestartFile] [--retries count] [--purgec]\r\n", "[--rlock] srcDataObj|srcCollection ... destLocalFile|destLocalDir\r\n", "Usage : iget [-fIKPQUvVT] [-n replNumber] [-N numThreads] [-X restartFile]\r\n", "[-R resource] [--lfrestart lfRestartFile] [--retries count] [--purgec]\r\n", "[--rlock] srcDataObj|srcCollection\r\n", "Usage : iget [-fIKPQUvVT] [-n replNumber] [-N numThreads] [-X restartFile]\r\n", "[-R resource] [--lfrestart lfRestartFile] [--retries count] [--purgec]\r\n", "[--rlock] srcDataObj ... -\r\n", "Get data-objects or collections from irods space, either to the specified\r\n", "local area or to the current working directory.\r\n", " \r\n", "If the destLocalFile is '-', the files read from the server will be \r\n", "written to the standard output (stdout). Similar to the UNIX 'cat'\r\n", "command, multiple source files can be specified.\r\n", " \r\n", "The -X option specifies that the restart option is on and the operation\r\n", "is restartable. The restartFile input specifies a local file that contains\r\n", "the restart info. If the restartFile does not exist, it will be created\r\n", "and used for recording subsequent restart info. If it exists and is not\r\n", "empty, the restart info contained in this file will be used to restart\r\n", "the operation. Note that the operation is not restarted automatically\r\n", "when it failed. Another iget -X run must be made to continue from where\r\n", "it left off using the restart info. But the -X option can be used in\r\n", "conjunction with the --retries option to automatically restart the operation\r\n", "in case of failure. Also note that the restart operation only works for\r\n", "uploading directories and the path input must be identical to the one\r\n", "that generated the restart file\r\n", " \r\n", "The --lfrestart option specifies that the large file restart option is on\r\n", "and the lfRestartFile input specifies a local file that contains the restart\r\n", "info. Currently, only files larger than 32 Mbytes will be restarted.\r\n", "The --lfrestart option can be used together with the -X option to do large\r\n", "file transfer restart as part of the overall collection download restart.\r\n", " \r\n", "The -Q option specifies the use of the RBUDP transfer mechanism which uses\r\n", "the UDP protocol for data transfer. The UDP protocol is very efficient\r\n", "if the network is very robust with few packet losses. Two environment\r\n", "variables - rbudpSendRate and rbudpPackSize are used to tune the RBUDP\r\n", "data transfer. rbudpSendRate is used to throttle the send rate in \r\n", "kbits/sec. The default rbudpSendRate is 600,000. rbudpPackSize is used\r\n", "to set the packet size. The dafault rbudpPackSize is 8192. The -V option\r\n", "can be used to show the loss rate of the transfer. If the lost rate is\r\n", "more than a few %, the sendrate should be reduced.\r\n", " \r\n", "The -T option will renew the socket connection between the client and \r\n", "server after 10 minutes of connection. This gets around the problem of\r\n", "sockets getting timed out by the firewall as reported by some users.\r\n", " \r\n", "Options are:\r\n", " -f force - write local files even it they exist already (overwrite them)\r\n", " -I redirect connection - redirect the connection to connect directly\r\n", " to the best (determiined by the first 10 data objects in the input\r\n", " collection) resource server.\r\n", " -K verify the checksum\r\n", " -n replNumber - retrieve the copy with the specified replica number \r\n", " -N numThreads - the number of thread to use for the transfer. A value of\r\n", " 0 means no threading. By default (-N option not used) the server \r\n", " decides the number of threads to use.\r\n", " --purgec Purge the staged cache copy after downloading a COMPOUND object\r\n", " -P output the progress of the download.\r\n", " -r recursive - retrieve subcollections\r\n", " -R resource - the preferred resource\r\n", " -T renew socket connection after 10 minutes\r\n", " -Q use RBUDP (datagram) protocol for the data transfer\r\n", " -v verbose\r\n", " -V Very verbose\r\n", " restartFile input specifies a local file that contains the restart info.\r\n", " -X restartFile - specifies that the restart option is on and the\r\n", " restartFile input specifies a local file that contains the restart info.\r\n", "--retries count - Retry the iget in case of error. The 'count' input\r\n", " specifies the number of times to retry. It must be used with the\r\n", " -X option\r\n", " --lfrestart lfRestartFile - specifies that the large file restart option is\r\n", " on and the lfRestartFile input specifies a local file that contains\r\n", " the restart info.\r\n", " -t ticket - ticket (string) to use for ticket-based access.\r\n", " --rlock - use advisory read lock for the download\r\n", " -h this help\r\n", "\r\n", "iRODS Version 3.2 October 2012 iget\r\n" ] } ], "prompt_number": 21 }, { "cell_type": "code", "collapsed": false, "input": [ "!iget '/iplant/home/sr320/Cgigas_v9/Zhang/RNAseq2bedgraph_G3-2014-03-06-16-26-41.026/bedtools_genomecov_output' G3.bedgraph" ], "language": "python", "metadata": {}, "outputs": [], "prompt_number": 26 }, { "cell_type": "code", "collapsed": false, "input": [ "!head /Users/sr320/Desktop/zG3_v9.bed" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "C1\t4\t6\t1\r\n", "C1\t6\t94\t2\r\n", "C1\t94\t96\t1\r\n", "C10015\t21\t23\t5\r\n", "C10015\t23\t26\t18\r\n", "C10015\t26\t28\t19\r\n", "C10015\t28\t39\t24\r\n", "C10015\t39\t43\t25\r\n", "C10015\t43\t61\t28\r\n", "C10015\t61\t111\t31\r\n" ] } ], "prompt_number": 27 }, { "cell_type": "markdown", "metadata": {}, "source": [ "\n", "Need to add a few columns? to get COGE to take it" ] }, { "cell_type": "code", "collapsed": false, "input": [ "!awk '{ print $1,$2,$3,\"tophat\",$4,\"+\" }' /Users/sr320/Desktop/zG3_v9.bed > /Volumes/web/cnidarian/zG3_v9.bed" ], "language": "python", "metadata": {}, "outputs": [], "prompt_number": 28 }, { "cell_type": "code", "collapsed": false, "input": [ "!head /Volumes/web/cnidarian/zG3_v9.bed" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "C1 4 6 tophat 1 +\r\n", "C1 6 94 tophat 2 +\r\n", "C1 94 96 tophat 1 +\r\n", "C10015 21 23 tophat 5 +\r\n", "C10015 23 26 tophat 18 +\r\n", "C10015 26 28 tophat 19 +\r\n", "C10015 28 39 tophat 24 +\r\n", "C10015 39 43 tophat 25 +\r\n", "C10015 43 61 tophat 28 +\r\n", "C10015 61 111 tophat 31 +\r\n" ] } ], "prompt_number": 29 }, { "cell_type": "markdown", "metadata": {}, "source": [ "Still haveing issues. \n", "\"CoGe__LoadExperiment_18CA27FA.png\"/" ] }, { "cell_type": "heading", "level": 4, "metadata": {}, "source": [ "Again - streamline with Fgo \n", "\n", "\n", "\n", "http://goo.gl/jBS0mS" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Step 1. unzip gz fastq files in Iplant\n" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Step2. run RNASeq2Bedgraph in IPlant" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Step3. rename using icommands" ] }, { "cell_type": "code", "collapsed": false, "input": [ "bgdir=\"/iplant/home/sr320/Cgigas_v9/Zhang/bgraph\"" ], "language": "python", "metadata": {}, "outputs": [], "prompt_number": 64 }, { "cell_type": "code", "collapsed": false, "input": [ "!ils {bgdir}" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "/iplant/home/sr320/Cgigas_v9/Zhang/bgraph:\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ " C- /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/RNAseq2bedgraph_Fgo-2014-03-07-10-07-12.617\r\n", " C- /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/RNAseq2bedgraph_G3-2014-03-06-16-26-41.026\r\n" ] } ], "prompt_number": 88 }, { "cell_type": "code", "collapsed": false, "input": [ "folder=\"RNAseq2bedgraph_Fgo-2014-03-07-10-07-12.617\"\n", "id=\"Fgo\"" ], "language": "python", "metadata": {}, "outputs": [], "prompt_number": 80 }, { "cell_type": "code", "collapsed": false, "input": [ "!icd /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/{folder}\n", "!imv accepted_hits.bam z{id}_tophat.bam\n", "!imv bedtools_genomecov_output z{id}_th_genomecov.bedgraph\n", "!cd /Volumes/web/cnidarian/\n", "!iget z{id}_th_genomecov.bedgraph\n", "!iget z{id}_tophat.bam\n", "!igvtools toTDF z{id}_th_genomecov.bedgraph z{id}_th_genomecov.bedgraph.tdf /Volumes/web/cnidarian/cgigas_v9_genome03.chrom.sizes\n", "!iput z{id}_th_genomecov.bedgraph.tdf" ], "language": "python", "metadata": {}, "outputs": [], "prompt_number": 91 }, { "cell_type": "heading", "level": 4, "metadata": {}, "source": [ "Mgo" ] }, { "cell_type": "code", "collapsed": false, "input": [ "bgdir=\"/iplant/home/sr320/Cgigas_v9/Zhang/bgraph\"\n", "!ils {bgdir}" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "/iplant/home/sr320/Cgigas_v9/Zhang/bgraph:\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ " C- /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/RNAseq2bedgraph_Fgo-2014-03-07-10-07-12.617\r\n", " C- /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/RNAseq2bedgraph_G3-2014-03-06-16-26-41.026\r\n", " C- /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/RNAseq2bedgraph_Mgo1.3-2014-03-07-14-06-07.430\r\n", " C- /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/RNAseq2bedgraph_Mgo-2014-03-07-14-03-33.677\r\n" ] } ], "prompt_number": 1 }, { "cell_type": "code", "collapsed": false, "input": [ "folder=\"RNAseq2bedgraph_Mgo-2014-03-07-14-03-33.677\"\n", "id=\"Mgo\"" ], "language": "python", "metadata": {}, "outputs": [], "prompt_number": 5 }, { "cell_type": "code", "collapsed": false, "input": [ "!icd /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/{folder}\n", "!imv accepted_hits.bam z{id}_tophat.bam\n", "!imv bedtools_genomecov_output z{id}_th_genomecov.bedgraph\n", "!cd /Volumes/web/cnidarian/\n", "!iget z{id}_th_genomecov.bedgraph\n", "!iget z{id}_tophat.bam\n", "!igvtools toTDF z{id}_th_genomecov.bedgraph z{id}_th_genomecov.bedgraph.tdf /Volumes/web/cnidarian/cgigas_v9_genome03.chrom.sizes\n", "!iput z{id}_th_genomecov.bedgraph.tdf" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "ERROR: getUtil: get error for ./zMgo_th_genomecov.bedgraph status = -312000 OVERWRITE_WITHOUT_FORCE_FLAG\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "ERROR: getUtil: get error for ./zMgo_tophat.bam status = -312000 OVERWRITE_WITHOUT_FORCE_FLAG\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:16,923] [IgvTools.java:613] [main] toTDF. File = zMgo_th_genomecov.bedgraph\r\n", "toTDF. File = zMgo_th_genomecov.bedgraph\r\n", "INFO [2014-03-08 06:12:16,927] [IgvTools.java:614] [main] Max zoom = 7\r\n", "Max zoom = 7\r\n", "INFO [2014-03-08 06:12:16,927] [IgvTools.java:622] [main] Window functions: mean \r\n", "Window functions: mean \r\n", "INFO [2014-03-08 06:12:16,956] [GenomeManager.java:130] [main] Loading genome: /Volumes/web/cnidarian/cgigas_v9_genome03.chrom.sizes\r\n", "Loading genome: /Volumes/web/cnidarian/cgigas_v9_genome03.chrom.sizes\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:17,328] [DirectoryManager.java:149] [main] IGV Directory: /Users/sr320/igv\r\n", "IGV Directory: /Users/sr320/igv\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:17,361] [GenomeManager.java:174] [main] Genome loaded. id= /Volumes/web/cnidarian/cgigas_v9_genome03\r\n", "Genome loaded. id= /Volumes/web/cnidarian/cgigas_v9_genome03\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:17,481] [Preprocessor.java:241] [main] Processing chromosome C1\r\n", "Processing chromosome C1\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:17,715] [Preprocessor.java:241] [main] Processing chromosome C10015\r\n", "Processing chromosome C10015\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:18,020] [Preprocessor.java:241] [main] Processing chromosome C10033\r\n", "Processing chromosome C10033\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:18,269] [Preprocessor.java:241] [main] Processing chromosome C10043\r\n", "Processing chromosome C10043\r\n", "INFO [2014-03-08 06:12:18,296] [Preprocessor.java:241] [main] Processing chromosome C10047\r\n", "Processing chromosome C10047\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:18,464] [Preprocessor.java:241] [main] Processing chromosome 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}, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:19,443] [Preprocessor.java:241] [main] Processing chromosome C10183\r\n", "Processing chromosome C10183\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:19,512] [Preprocessor.java:241] [main] Processing chromosome C10189\r\n", "Processing chromosome C10189\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:19,572] [Preprocessor.java:241] [main] Processing chromosome C10241\r\n", "Processing chromosome C10241\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:19,640] [Preprocessor.java:241] [main] Processing chromosome C10261\r\n", "Processing chromosome C10261\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:19,709] [Preprocessor.java:241] [main] Processing chromosome C10263\r\n", "Processing chromosome C10263\r\n" ] }, { "output_type": 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chromosome C10693\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:22,163] [Preprocessor.java:241] [main] Processing chromosome C10695\r\n", "Processing chromosome C10695\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:22,215] [Preprocessor.java:241] [main] Processing chromosome C10699\r\n", "Processing chromosome C10699\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:22,328] [Preprocessor.java:241] [main] Processing chromosome C10701\r\n", "Processing chromosome C10701\r\n", "INFO [2014-03-08 06:12:22,338] [Preprocessor.java:241] [main] Processing chromosome C10741\r\n", "Processing chromosome C10741\r\n", "INFO [2014-03-08 06:12:22,362] [Preprocessor.java:241] [main] Processing chromosome C10759\r\n", "Processing chromosome C10759\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:22,395] [Preprocessor.java:241] [main] Processing chromosome C10765\r\n", "Processing chromosome C10765\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:22,468] [Preprocessor.java:241] [main] Processing chromosome C10775\r\n", "Processing chromosome C10775\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:22,522] [Preprocessor.java:241] [main] Processing chromosome C10803\r\n", "Processing chromosome C10803\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:22,543] [Preprocessor.java:241] [main] Processing chromosome C1081\r\n", "Processing chromosome C1081\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:22,622] [Preprocessor.java:241] [main] Processing chromosome C10811\r\n", "Processing chromosome C10811\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:22,726] [Preprocessor.java:241] [main] Processing chromosome C10819\r\n", "Processing chromosome C10819\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:22,796] [Preprocessor.java:241] [main] Processing chromosome C10821\r\n", "Processing chromosome C10821\r\n", "INFO [2014-03-08 06:12:22,845] [Preprocessor.java:241] [main] Processing chromosome C10829\r\n", "Processing chromosome C10829\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:22,903] [Preprocessor.java:241] [main] Processing chromosome C10833\r\n", "Processing chromosome C10833\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:22,972] [Preprocessor.java:241] [main] Processing chromosome C10837\r\n", "Processing chromosome C10837\r\n", "INFO [2014-03-08 06:12:22,994] [Preprocessor.java:241] [main] Processing chromosome C10871\r\n", "Processing chromosome C10871\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:23,067] [Preprocessor.java:241] [main] Processing chromosome C10881\r\n", "Processing chromosome C10881\r\n", "INFO [2014-03-08 06:12:23,089] [Preprocessor.java:241] [main] Processing chromosome C10897\r\n", "Processing chromosome C10897\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:23,122] [Preprocessor.java:241] [main] Processing chromosome C10901\r\n", "Processing chromosome C10901\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:23,192] [Preprocessor.java:241] [main] Processing chromosome C10905\r\n", "Processing chromosome C10905\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:23,239] [Preprocessor.java:241] [main] Processing chromosome C10941\r\n", "Processing chromosome C10941\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:23,261] [Preprocessor.java:241] [main] Processing chromosome C10947\r\n", "Processing chromosome C10947\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:23,327] [Preprocessor.java:241] [main] Processing chromosome C1095\r\n", "Processing chromosome C1095\r\n", "INFO [2014-03-08 06:12:23,360] [Preprocessor.java:241] [main] Processing chromosome C10955\r\n", "Processing chromosome C10955\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:23,428] [Preprocessor.java:241] [main] Processing chromosome C10959\r\n", "Processing chromosome C10959\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:23,484] [Preprocessor.java:241] [main] Processing chromosome C10961\r\n", "Processing chromosome C10961\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:23,553] [Preprocessor.java:241] [main] Processing chromosome C10963\r\n", "Processing chromosome C10963\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:23,613] [Preprocessor.java:241] [main] Processing chromosome C10967\r\n", "Processing chromosome C10967\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:23,651] [Preprocessor.java:241] [main] Processing chromosome C10999\r\n", "Processing chromosome C10999\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:23,700] [Preprocessor.java:241] [main] Processing chromosome C11001\r\n", "Processing chromosome C11001\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:23,758] [Preprocessor.java:241] [main] Processing chromosome C11027\r\n", "Processing chromosome C11027\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:23,811] [Preprocessor.java:241] [main] Processing chromosome C11031\r\n", "Processing chromosome C11031\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:23,847] [Preprocessor.java:241] [main] Processing chromosome C11057\r\n", "Processing chromosome C11057\r\n", "INFO [2014-03-08 06:12:23,888] [Preprocessor.java:241] [main] Processing chromosome C11061\r\n", "Processing chromosome C11061\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:23,942] [Preprocessor.java:241] [main] Processing chromosome C11065\r\n", "Processing chromosome C11065\r\n", "INFO [2014-03-08 06:12:23,982] [Preprocessor.java:241] [main] Processing chromosome C11081\r\n", "Processing chromosome C11081\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:24,027] [Preprocessor.java:241] [main] Processing chromosome C11083\r\n", "Processing chromosome C11083\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:24,074] [Preprocessor.java:241] [main] Processing chromosome C11085\r\n", "Processing chromosome C11085\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:24,125] [Preprocessor.java:241] [main] Processing chromosome C11095\r\n", "Processing chromosome C11095\r\n", "INFO [2014-03-08 06:12:24,144] [Preprocessor.java:241] [main] Processing chromosome C11125\r\n", "Processing chromosome C11125\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:24,194] [Preprocessor.java:241] [main] Processing chromosome C1113\r\n", "Processing chromosome C1113\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:24,232] [Preprocessor.java:241] [main] Processing chromosome C11133\r\n", "Processing chromosome C11133\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:24,292] [Preprocessor.java:241] [main] Processing chromosome C11143\r\n", "Processing chromosome C11143\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:24,316] [Preprocessor.java:241] [main] Processing chromosome C11175\r\n", "Processing chromosome C11175\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:24,372] [Preprocessor.java:241] [main] Processing chromosome C11177\r\n", "Processing chromosome C11177\r\n", "INFO [2014-03-08 06:12:24,392] [Preprocessor.java:241] [main] Processing chromosome C11191\r\n", "Processing chromosome C11191\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:24,454] [Preprocessor.java:241] [main] Processing chromosome C11193\r\n", "Processing chromosome C11193\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:24,474] [Preprocessor.java:241] [main] Processing chromosome C11207\r\n", "Processing chromosome C11207\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:24,533] [Preprocessor.java:241] [main] Processing chromosome C11211\r\n", "Processing chromosome C11211\r\n", "INFO [2014-03-08 06:12:24,565] [Preprocessor.java:241] [main] Processing chromosome C11215\r\n", "Processing chromosome C11215\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:24,631] [Preprocessor.java:241] [main] Processing chromosome C11223\r\n", "Processing chromosome C11223\r\n", "INFO [2014-03-08 06:12:24,657] [Preprocessor.java:241] [main] Processing chromosome C11227\r\n", "Processing chromosome C11227\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:24,721] [Preprocessor.java:241] [main] Processing chromosome C1123\r\n", "Processing chromosome C1123\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:24,777] [Preprocessor.java:241] [main] Processing chromosome C11270\r\n", "Processing chromosome C11270\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:24,796] [Preprocessor.java:241] [main] Processing chromosome C11278\r\n", "Processing chromosome C11278\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:24,849] [Preprocessor.java:241] [main] Processing chromosome C11282\r\n", "Processing chromosome C11282\r\n", "INFO [2014-03-08 06:12:24,873] [Preprocessor.java:241] [main] Processing chromosome C11288\r\n", "Processing chromosome C11288\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:24,926] [Preprocessor.java:241] [main] Processing chromosome C11292\r\n", "Processing chromosome C11292\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:24,964] [Preprocessor.java:241] [main] Processing chromosome C11302\r\n", "Processing chromosome C11302\r\n", "INFO [2014-03-08 06:12:24,987] [Preprocessor.java:241] [main] Processing chromosome C11304\r\n", "Processing chromosome C11304\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:25,075] [Preprocessor.java:241] [main] Processing chromosome C11350\r\n", "Processing chromosome C11350\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:25,146] [Preprocessor.java:241] [main] Processing chromosome C11352\r\n", "Processing chromosome C11352\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:25,211] [Preprocessor.java:241] [main] Processing chromosome C11358\r\n", "Processing chromosome C11358\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:25,273] [Preprocessor.java:241] [main] Processing chromosome C11366\r\n", "Processing chromosome C11366\r\n", "INFO [2014-03-08 06:12:25,293] [Preprocessor.java:241] [main] Processing chromosome C11372\r\n", "Processing chromosome C11372\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:25,367] [Preprocessor.java:241] [main] Processing chromosome C11400\r\n", "Processing chromosome C11400\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:25,429] [Preprocessor.java:241] [main] Processing chromosome C11402\r\n", "Processing chromosome C11402\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:25,481] [Preprocessor.java:241] [main] Processing chromosome C11408\r\n", "Processing chromosome C11408\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:25,524] [Preprocessor.java:241] [main] Processing chromosome C11410\r\n", "Processing chromosome C11410\r\n", "INFO [2014-03-08 06:12:25,542] [Preprocessor.java:241] [main] Processing chromosome C11416\r\n", "Processing chromosome C11416\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:25,592] [Preprocessor.java:241] [main] Processing chromosome C11422\r\n", "Processing chromosome C11422\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:25,645] [Preprocessor.java:241] [main] Processing chromosome C11428\r\n", "Processing chromosome C11428\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:25,686] [Preprocessor.java:241] [main] Processing chromosome C11468\r\n", "Processing chromosome C11468\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:25,720] [Preprocessor.java:241] [main] Processing chromosome C11470\r\n", "Processing chromosome C11470\r\n", "INFO [2014-03-08 06:12:25,739] [Preprocessor.java:241] [main] Processing chromosome C11474\r\n", "Processing chromosome C11474\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:25,772] [Preprocessor.java:241] [main] Processing chromosome C11476\r\n", "Processing chromosome C11476\r\n", "INFO [2014-03-08 06:12:25,803] [Preprocessor.java:241] [main] Processing chromosome C11478\r\n", "Processing chromosome C11478\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:25,834] [Preprocessor.java:241] [main] Processing chromosome C11484\r\n", "Processing chromosome C11484\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:25,877] [Preprocessor.java:241] [main] Processing chromosome C11488\r\n", "Processing chromosome C11488\r\n", "INFO [2014-03-08 06:12:25,896] [Preprocessor.java:241] [main] Processing chromosome C11490\r\n", "Processing chromosome C11490\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:25,940] [Preprocessor.java:241] [main] Processing chromosome C11496\r\n", "Processing chromosome C11496\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:25,998] [Preprocessor.java:241] [main] Processing chromosome C11500\r\n", "Processing chromosome C11500\r\n", "INFO [2014-03-08 06:12:26,017] [Preprocessor.java:241] [main] Processing chromosome C1151\r\n", "Processing chromosome C1151\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:26,061] [Preprocessor.java:241] [main] Processing chromosome C11532\r\n", "Processing chromosome C11532\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:26,100] [Preprocessor.java:241] [main] Processing chromosome C11540\r\n", "Processing chromosome C11540\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:26,131] [Preprocessor.java:241] [main] Processing chromosome C1155\r\n", "Processing chromosome C1155\r\n", "INFO [2014-03-08 06:12:26,175] [Preprocessor.java:241] [main] Processing chromosome C11552\r\n", "Processing chromosome C11552\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:26,309] [Preprocessor.java:241] [main] Processing chromosome C11558\r\n", "Processing chromosome C11558\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:26,360] [Preprocessor.java:241] [main] Processing chromosome C11560\r\n", "Processing chromosome C11560\r\n", "INFO [2014-03-08 06:12:26,378] [Preprocessor.java:241] [main] Processing chromosome C11568\r\n", "Processing chromosome C11568\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:26,432] [Preprocessor.java:241] [main] Processing chromosome C1157\r\n", "Processing chromosome C1157\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:26,465] [Preprocessor.java:241] [main] Processing chromosome C11570\r\n", "Processing chromosome C11570\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:26,505] [Preprocessor.java:241] [main] Processing chromosome C11572\r\n", "Processing chromosome C11572\r\n", "INFO [2014-03-08 06:12:26,536] [Preprocessor.java:241] [main] Processing chromosome C11574\r\n", "Processing chromosome C11574\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:26,585] [Preprocessor.java:241] [main] Processing chromosome C1159\r\n", "Processing chromosome C1159\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:26,616] [Preprocessor.java:241] [main] Processing chromosome C1161\r\n", "Processing chromosome C1161\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:26,667] [Preprocessor.java:241] [main] Processing chromosome C11614\r\n", "Processing chromosome C11614\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:26,729] [Preprocessor.java:241] [main] Processing chromosome C11636\r\n", "Processing chromosome C11636\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:26,912] [Preprocessor.java:241] [main] Processing chromosome C11638\r\n", "Processing chromosome C11638\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:26,930] [Preprocessor.java:241] [main] Processing chromosome C11646\r\n", "Processing chromosome C11646\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:26,996] [Preprocessor.java:241] [main] Processing chromosome C1169\r\n", "Processing chromosome C1169\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:27,058] [Preprocessor.java:241] [main] Processing chromosome C11690\r\n", "Processing chromosome C11690\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:27,098] [Preprocessor.java:241] [main] Processing chromosome C11702\r\n", "Processing chromosome C11702\r\n", "INFO [2014-03-08 06:12:27,131] [Preprocessor.java:241] [main] Processing chromosome C11706\r\n", "Processing chromosome C11706\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:27,181] [Preprocessor.java:241] [main] Processing chromosome C11708\r\n", "Processing chromosome C11708\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:27,224] [Preprocessor.java:241] [main] Processing chromosome C11734\r\n", "Processing chromosome C11734\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:27,283] [Preprocessor.java:241] [main] Processing chromosome C1175\r\n", "Processing chromosome C1175\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:27,340] [Preprocessor.java:241] [main] Processing chromosome C11756\r\n", "Processing chromosome C11756\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:27,358] [Preprocessor.java:241] [main] Processing chromosome C11758\r\n", "Processing chromosome C11758\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:27,458] [Preprocessor.java:241] [main] Processing chromosome C11768\r\n", "Processing chromosome C11768\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:27,537] [Preprocessor.java:241] [main] Processing chromosome C1177\r\n", "Processing chromosome C1177\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:27,570] [Preprocessor.java:241] [main] Processing chromosome C11776\r\n", "Processing chromosome C11776\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:27,622] [Preprocessor.java:241] [main] Processing chromosome C11806\r\n", "Processing chromosome C11806\r\n", "INFO [2014-03-08 06:12:27,641] [Preprocessor.java:241] [main] Processing chromosome C11812\r\n", "Processing chromosome C11812\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:27,709] [Preprocessor.java:241] [main] Processing chromosome C11814\r\n", "Processing chromosome C11814\r\n", "INFO [2014-03-08 06:12:27,749] [Preprocessor.java:241] [main] Processing chromosome C11816\r\n", "Processing chromosome C11816\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:27,783] [Preprocessor.java:241] [main] Processing chromosome C11858\r\n", "Processing chromosome C11858\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:27,815] [Preprocessor.java:241] [main] Processing chromosome C11864\r\n", "Processing chromosome C11864\r\n", "INFO [2014-03-08 06:12:27,859] [Preprocessor.java:241] [main] Processing chromosome C11868\r\n", "Processing chromosome C11868\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:27,909] [Preprocessor.java:241] [main] Processing chromosome C11876\r\n", "Processing chromosome C11876\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:27,968] [Preprocessor.java:241] [main] Processing chromosome C11894\r\n", "Processing chromosome C11894\r\n", "INFO [2014-03-08 06:12:27,989] [Preprocessor.java:241] [main] Processing chromosome C11900\r\n", "Processing chromosome C11900\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:28,019] [Preprocessor.java:241] [main] Processing chromosome C11906\r\n", "Processing chromosome C11906\r\n", "INFO [2014-03-08 06:12:28,065] [Preprocessor.java:241] [main] Processing chromosome C1191\r\n", "Processing chromosome C1191\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:28,098] [Preprocessor.java:241] [main] Processing chromosome C11942\r\n", "Processing chromosome C11942\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:28,179] [Preprocessor.java:241] [main] Processing chromosome C11950\r\n", "Processing chromosome C11950\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:28,232] [Preprocessor.java:241] [main] Processing chromosome C11962\r\n", "Processing chromosome C11962\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:28,297] [Preprocessor.java:241] [main] Processing chromosome C11970\r\n", "Processing chromosome C11970\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:28,343] [Preprocessor.java:241] [main] Processing chromosome C12004\r\n", "Processing chromosome C12004\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:28,388] [Preprocessor.java:241] [main] Processing chromosome C12006\r\n", "Processing chromosome C12006\r\n", "INFO [2014-03-08 06:12:28,409] [Preprocessor.java:241] [main] Processing chromosome C12008\r\n", "Processing chromosome C12008\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:28,479] [Preprocessor.java:241] [main] Processing chromosome C12014\r\n", "Processing chromosome C12014\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:28,500] [Preprocessor.java:241] [main] Processing chromosome C12032\r\n", "Processing chromosome C12032\r\n", "INFO [2014-03-08 06:12:28,533] [Preprocessor.java:241] [main] Processing chromosome C12034\r\n", "Processing chromosome C12034\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:28,594] [Preprocessor.java:241] [main] Processing chromosome C1205\r\n", "Processing chromosome C1205\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:28,656] [Preprocessor.java:241] [main] Processing chromosome C12054\r\n", "Processing chromosome C12054\r\n", "INFO [2014-03-08 06:12:28,674] [Preprocessor.java:241] [main] Processing chromosome C12056\r\n", "Processing chromosome C12056\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:28,730] [Preprocessor.java:241] [main] Processing chromosome C12058\r\n", "Processing chromosome C12058\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:28,776] [Preprocessor.java:241] [main] Processing chromosome C12062\r\n", "Processing chromosome C12062\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:28,832] [Preprocessor.java:241] [main] Processing chromosome C12064\r\n", "Processing chromosome C12064\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:28,851] [Preprocessor.java:241] [main] Processing chromosome C12066\r\n", "Processing chromosome C12066\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:28,901] [Preprocessor.java:241] [main] Processing chromosome C12068\r\n", "Processing chromosome C12068\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:28,951] [Preprocessor.java:241] [main] Processing chromosome C1207\r\n", "Processing chromosome C1207\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:29,016] [Preprocessor.java:241] [main] Processing chromosome C12106\r\n", "Processing chromosome C12106\r\n", "INFO [2014-03-08 06:12:29,036] [Preprocessor.java:241] [main] Processing chromosome C12108\r\n", "Processing chromosome C12108\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:29,107] [Preprocessor.java:241] [main] Processing chromosome C12110\r\n", "Processing chromosome C12110\r\n", "INFO [2014-03-08 06:12:29,148] [Preprocessor.java:241] [main] Processing chromosome C12122\r\n", "Processing chromosome C12122\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:29,170] [Preprocessor.java:241] [main] Processing chromosome C12146\r\n", "Processing chromosome C12146\r\n", "INFO [2014-03-08 06:12:29,201] [Preprocessor.java:241] [main] Processing chromosome C12152\r\n", "Processing chromosome C12152\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:29,230] [Preprocessor.java:241] [main] Processing chromosome C12166\r\n", "Processing chromosome C12166\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:29,262] [Preprocessor.java:241] [main] Processing chromosome C12206\r\n", "Processing chromosome C12206\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:29,331] [Preprocessor.java:241] [main] Processing chromosome C12216\r\n", "Processing chromosome C12216\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:29,387] [Preprocessor.java:241] [main] Processing chromosome C12220\r\n", "Processing chromosome C12220\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:29,434] [Preprocessor.java:241] [main] Processing chromosome C12252\r\n", "Processing chromosome C12252\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:29,500] [Preprocessor.java:241] [main] Processing chromosome C12264\r\n", "Processing chromosome C12264\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:29,532] [Preprocessor.java:241] [main] Processing chromosome C12274\r\n", "Processing chromosome C12274\r\n", "INFO [2014-03-08 06:12:29,564] [Preprocessor.java:241] [main] Processing chromosome C12282\r\n", "Processing chromosome C12282\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:29,585] [Preprocessor.java:241] [main] Processing chromosome C12298\r\n", "Processing chromosome C12298\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:29,646] [Preprocessor.java:241] [main] Processing chromosome C12314\r\n", "Processing chromosome C12314\r\n", "INFO [2014-03-08 06:12:29,663] [Preprocessor.java:241] [main] Processing chromosome C12316\r\n", "Processing chromosome C12316\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:29,723] [Preprocessor.java:241] [main] Processing chromosome C12320\r\n", "Processing chromosome C12320\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:29,758] [Preprocessor.java:241] [main] Processing chromosome C12324\r\n", "Processing chromosome C12324\r\n", "INFO [2014-03-08 06:12:29,776] [Preprocessor.java:241] [main] Processing chromosome C12328\r\n", "Processing chromosome C12328\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:29,823] [Preprocessor.java:241] [main] Processing chromosome C12366\r\n", "Processing chromosome C12366\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:29,846] [Preprocessor.java:241] [main] Processing chromosome C12368\r\n", "Processing chromosome C12368\r\n", "INFO [2014-03-08 06:12:29,885] [Preprocessor.java:241] [main] Processing chromosome C12376\r\n", "Processing chromosome C12376\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:29,935] [Preprocessor.java:241] [main] Processing chromosome C12382\r\n", "Processing chromosome C12382\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:30,003] [Preprocessor.java:241] [main] Processing chromosome C12386\r\n", "Processing chromosome C12386\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:30,053] [Preprocessor.java:241] [main] Processing chromosome C12388\r\n", "Processing chromosome C12388\r\n", "INFO [2014-03-08 06:12:30,089] [Preprocessor.java:241] [main] Processing chromosome C12390\r\n", "Processing chromosome C12390\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:30,146] [Preprocessor.java:241] [main] Processing chromosome C12392\r\n", "Processing chromosome C12392\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:30,167] [Preprocessor.java:241] [main] Processing chromosome C12412\r\n", "Processing chromosome C12412\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:30,212] [Preprocessor.java:241] [main] Processing chromosome C12420\r\n", "Processing chromosome C12420\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:30,263] [Preprocessor.java:241] [main] Processing chromosome C12426\r\n", "Processing chromosome C12426\r\n", "INFO [2014-03-08 06:12:30,306] [Preprocessor.java:241] [main] Processing chromosome C12428\r\n", "Processing chromosome C12428\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:30,355] [Preprocessor.java:241] [main] Processing chromosome C12430\r\n", "Processing chromosome C12430\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:30,381] [Preprocessor.java:241] [main] Processing chromosome C12438\r\n", "Processing chromosome C12438\r\n", "INFO [2014-03-08 06:12:30,415] [Preprocessor.java:241] [main] Processing chromosome C12478\r\n", "Processing chromosome C12478\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:30,470] [Preprocessor.java:241] [main] Processing chromosome C12480\r\n", "Processing chromosome C12480\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:30,496] [Preprocessor.java:241] [main] Processing chromosome C12484\r\n", "Processing chromosome C12484\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:30,557] [Preprocessor.java:241] [main] Processing chromosome C12492\r\n", "Processing chromosome C12492\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:30,637] [Preprocessor.java:241] [main] Processing chromosome C12494\r\n", "Processing chromosome C12494\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:30,698] [Preprocessor.java:241] [main] Processing chromosome C12504\r\n", "Processing chromosome C12504\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:30,764] [Preprocessor.java:241] [main] Processing chromosome C12506\r\n", "Processing chromosome C12506\r\n", "INFO [2014-03-08 06:12:30,803] [Preprocessor.java:241] [main] Processing chromosome C12508\r\n", "Processing chromosome C12508\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:30,833] [Preprocessor.java:241] [main] Processing chromosome C12534\r\n", "Processing chromosome C12534\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:30,876] [Preprocessor.java:241] [main] Processing chromosome C12538\r\n", "Processing chromosome C12538\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:30,935] [Preprocessor.java:241] [main] Processing chromosome C12540\r\n", "Processing chromosome C12540\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:30,991] [Preprocessor.java:241] [main] Processing chromosome C12542\r\n", "Processing chromosome C12542\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:31,045] [Preprocessor.java:241] [main] Processing chromosome C12548\r\n", "Processing chromosome C12548\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:31,094] [Preprocessor.java:241] [main] Processing chromosome C12558\r\n", "Processing chromosome C12558\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:31,136] [Preprocessor.java:241] [main] Processing chromosome C12584\r\n", "Processing chromosome C12584\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:31,189] [Preprocessor.java:241] [main] Processing chromosome C12590\r\n", "Processing chromosome C12590\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:31,232] [Preprocessor.java:241] [main] Processing chromosome C12592\r\n", "Processing chromosome C12592\r\n", "INFO [2014-03-08 06:12:31,249] [Preprocessor.java:241] [main] Processing chromosome C12618\r\n", "Processing chromosome C12618\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:31,313] [Preprocessor.java:241] [main] Processing chromosome C12622\r\n", "Processing chromosome C12622\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:31,342] [Preprocessor.java:241] [main] Processing chromosome C12658\r\n", "Processing chromosome C12658\r\n", "INFO [2014-03-08 06:12:31,375] [Preprocessor.java:241] [main] Processing chromosome C12660\r\n", "Processing chromosome C12660\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:31,413] [Preprocessor.java:241] [main] Processing chromosome C12662\r\n", "Processing chromosome C12662\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:31,471] [Preprocessor.java:241] [main] Processing chromosome C12670\r\n", "Processing chromosome C12670\r\n", "INFO [2014-03-08 06:12:31,488] [Preprocessor.java:241] [main] Processing chromosome C12682\r\n", "Processing chromosome C12682\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:31,528] [Preprocessor.java:241] [main] Processing chromosome C12708\r\n", "Processing chromosome C12708\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:31,558] [Preprocessor.java:241] [main] Processing chromosome C12718\r\n", "Processing chromosome C12718\r\n", "INFO [2014-03-08 06:12:31,577] [Preprocessor.java:241] [main] Processing chromosome C12722\r\n", "Processing chromosome C12722\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:31,616] [Preprocessor.java:241] [main] Processing chromosome C12724\r\n", "Processing chromosome C12724\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:31,658] [Preprocessor.java:241] [main] Processing chromosome C12738\r\n", "Processing chromosome C12738\r\n", "INFO [2014-03-08 06:12:31,700] [Preprocessor.java:241] [main] Processing chromosome C12748\r\n", "Processing chromosome C12748\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:31,738] [Preprocessor.java:241] [main] Processing chromosome C12758\r\n", "Processing chromosome C12758\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:31,809] [Preprocessor.java:241] [main] Processing chromosome C12760\r\n", "Processing chromosome C12760\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:31,853] [Preprocessor.java:241] [main] Processing chromosome C12764\r\n", "Processing chromosome C12764\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:31,907] [Preprocessor.java:241] [main] Processing chromosome C12778\r\n", "Processing chromosome C12778\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:31,924] [Preprocessor.java:241] [main] Processing chromosome C12786\r\n", "Processing chromosome C12786\r\n", "INFO [2014-03-08 06:12:31,951] [Preprocessor.java:241] [main] Processing chromosome C12798\r\n", "Processing chromosome C12798\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:32,009] [Preprocessor.java:241] [main] Processing chromosome C12814\r\n", "Processing chromosome C12814\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:32,056] [Preprocessor.java:241] [main] Processing chromosome C12828\r\n", "Processing chromosome C12828\r\n", "INFO [2014-03-08 06:12:32,076] [Preprocessor.java:241] [main] Processing chromosome C12830\r\n", "Processing chromosome C12830\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:32,132] [Preprocessor.java:241] [main] Processing chromosome C12832\r\n", "Processing chromosome C12832\r\n", "INFO [2014-03-08 06:12:32,150] [Preprocessor.java:241] [main] Processing chromosome C12838\r\n", "Processing chromosome C12838\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:32,216] [Preprocessor.java:241] [main] Processing chromosome C12840\r\n", "Processing chromosome C12840\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:32,240] [Preprocessor.java:241] [main] Processing chromosome C12848\r\n", "Processing chromosome C12848\r\n", "INFO [2014-03-08 06:12:32,280] [Preprocessor.java:241] [main] Processing chromosome C12882\r\n", "Processing chromosome C12882\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:32,340] [Preprocessor.java:241] [main] Processing chromosome C12906\r\n", "Processing chromosome C12906\r\n", "INFO [2014-03-08 06:12:32,359] [Preprocessor.java:241] [main] Processing chromosome C12916\r\n", "Processing chromosome C12916\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:32,424] [Preprocessor.java:241] [main] Processing chromosome C12928\r\n", "Processing chromosome C12928\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:32,457] [Preprocessor.java:241] [main] Processing chromosome C12930\r\n", "Processing chromosome C12930\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:32,512] [Preprocessor.java:241] [main] Processing chromosome C12932\r\n", "Processing chromosome C12932\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:32,568] [Preprocessor.java:241] [main] Processing chromosome C12934\r\n", "Processing chromosome C12934\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:32,623] [Preprocessor.java:241] [main] Processing chromosome C12938\r\n", "Processing chromosome C12938\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:32,679] [Preprocessor.java:241] [main] Processing chromosome C12970\r\n", "Processing chromosome C12970\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:32,743] [Preprocessor.java:241] [main] Processing chromosome C12972\r\n", "Processing chromosome C12972\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:32,801] [Preprocessor.java:241] [main] Processing chromosome C12974\r\n", "Processing chromosome C12974\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:32,849] [Preprocessor.java:241] [main] Processing chromosome C12984\r\n", "Processing chromosome C12984\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:32,869] [Preprocessor.java:241] [main] Processing chromosome C13016\r\n", "Processing chromosome C13016\r\n", "INFO [2014-03-08 06:12:32,897] [Preprocessor.java:241] [main] Processing chromosome C13020\r\n", "Processing chromosome C13020\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:32,959] [Preprocessor.java:241] [main] Processing chromosome C13026\r\n", "Processing chromosome C13026\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:33,012] [Preprocessor.java:241] [main] Processing chromosome C13028\r\n", "Processing chromosome C13028\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:33,074] [Preprocessor.java:241] [main] Processing chromosome C1305\r\n", "Processing chromosome C1305\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:33,134] [Preprocessor.java:241] [main] Processing chromosome C13050\r\n", "Processing chromosome C13050\r\n", "INFO [2014-03-08 06:12:33,151] [Preprocessor.java:241] [main] Processing chromosome C13052\r\n", "Processing chromosome C13052\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:33,228] [Preprocessor.java:241] [main] Processing chromosome C13054\r\n", "Processing chromosome C13054\r\n", "INFO [2014-03-08 06:12:33,260] [Preprocessor.java:241] [main] Processing chromosome C13080\r\n", "Processing chromosome C13080\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:33,294] [Preprocessor.java:241] [main] Processing chromosome C13094\r\n", "Processing chromosome C13094\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:33,320] [Preprocessor.java:241] [main] Processing chromosome C13098\r\n", "Processing chromosome C13098\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:33,390] [Preprocessor.java:241] [main] Processing chromosome C13134\r\n", "Processing chromosome C13134\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:33,430] [Preprocessor.java:241] [main] Processing chromosome C13136\r\n", "Processing chromosome C13136\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:33,477] [Preprocessor.java:241] [main] Processing chromosome C13140\r\n", "Processing chromosome C13140\r\n", "INFO [2014-03-08 06:12:33,527] [Preprocessor.java:241] [main] Processing chromosome C13156\r\n", "Processing chromosome C13156\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:33,588] [Preprocessor.java:241] [main] Processing chromosome C13164\r\n", "Processing chromosome C13164\r\n", "INFO [2014-03-08 06:12:33,605] [Preprocessor.java:241] [main] Processing chromosome C13178\r\n", "Processing chromosome C13178\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:33,644] [Preprocessor.java:241] [main] Processing chromosome C13180\r\n", "Processing chromosome C13180\r\n", "INFO [2014-03-08 06:12:33,660] [Preprocessor.java:241] [main] Processing chromosome C13186\r\n", "Processing chromosome C13186\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:33,700] [Preprocessor.java:241] [main] Processing chromosome C1319\r\n", "Processing chromosome C1319\r\n", "INFO [2014-03-08 06:12:33,731] [Preprocessor.java:241] [main] Processing chromosome C13208\r\n", "Processing chromosome C13208\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:33,767] [Preprocessor.java:241] [main] Processing chromosome C13218\r\n", "Processing chromosome C13218\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:33,815] [Preprocessor.java:241] [main] Processing chromosome C13260\r\n", "Processing chromosome C13260\r\n", "INFO [2014-03-08 06:12:33,833] [Preprocessor.java:241] [main] Processing chromosome C13266\r\n", "Processing chromosome C13266\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:33,875] [Preprocessor.java:241] [main] Processing chromosome C13268\r\n", "Processing chromosome C13268\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:33,935] [Preprocessor.java:241] [main] Processing chromosome C13320\r\n", "Processing chromosome C13320\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:33,998] [Preprocessor.java:241] [main] Processing chromosome C13324\r\n", "Processing chromosome C13324\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:34,041] [Preprocessor.java:241] [main] Processing chromosome C13326\r\n", "Processing chromosome C13326\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:34,087] [Preprocessor.java:241] [main] Processing chromosome C13328\r\n", "Processing chromosome C13328\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:34,146] [Preprocessor.java:241] [main] Processing chromosome C13346\r\n", "Processing chromosome C13346\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:34,166] [Preprocessor.java:241] [main] Processing chromosome C13370\r\n", "Processing chromosome C13370\r\n", "INFO [2014-03-08 06:12:34,205] [Preprocessor.java:241] [main] Processing chromosome C13396\r\n", "Processing chromosome C13396\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:34,245] [Preprocessor.java:241] [main] Processing chromosome C13406\r\n", "Processing chromosome C13406\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:34,313] [Preprocessor.java:241] [main] Processing chromosome C13424\r\n", "Processing chromosome C13424\r\n", "INFO [2014-03-08 06:12:34,332] [Preprocessor.java:241] [main] Processing chromosome C13440\r\n", "Processing chromosome C13440\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:34,401] [Preprocessor.java:241] [main] Processing chromosome C13460\r\n", "Processing chromosome C13460\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:34,420] [Preprocessor.java:241] [main] Processing chromosome C13462\r\n", "Processing chromosome C13462\r\n", "INFO [2014-03-08 06:12:34,461] [Preprocessor.java:241] [main] Processing chromosome C13466\r\n", "Processing chromosome C13466\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:34,478] [Preprocessor.java:241] [main] Processing chromosome C13508\r\n", "Processing chromosome C13508\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:34,556] [Preprocessor.java:241] [main] Processing chromosome C13512\r\n", "Processing chromosome C13512\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:34,610] [Preprocessor.java:241] [main] Processing chromosome C13528\r\n", "Processing chromosome C13528\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:34,671] [Preprocessor.java:241] [main] Processing chromosome C13532\r\n", "Processing chromosome C13532\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:34,742] [Preprocessor.java:241] [main] Processing chromosome C13552\r\n", "Processing chromosome C13552\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:34,798] [Preprocessor.java:241] [main] Processing chromosome C13584\r\n", "Processing chromosome C13584\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:34,875] [Preprocessor.java:241] [main] Processing chromosome C13590\r\n", "Processing chromosome C13590\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:34,919] [Preprocessor.java:241] [main] Processing chromosome C13592\r\n", "Processing chromosome C13592\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:35,000] [Preprocessor.java:241] [main] Processing chromosome C13600\r\n", "Processing chromosome C13600\r\n", "INFO [2014-03-08 06:12:35,024] [Preprocessor.java:241] [main] Processing chromosome C13614\r\n", "Processing chromosome C13614\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:35,099] [Preprocessor.java:241] [main] Processing chromosome C13652\r\n", "Processing chromosome C13652\r\n", "INFO [2014-03-08 06:12:35,127] [Preprocessor.java:241] [main] Processing chromosome C13654\r\n", "Processing chromosome C13654\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:35,168] [Preprocessor.java:241] [main] Processing chromosome C13666\r\n", "Processing chromosome C13666\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:35,205] [Preprocessor.java:241] [main] Processing chromosome C13690\r\n", "Processing chromosome C13690\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:35,267] [Preprocessor.java:241] [main] Processing chromosome C13716\r\n", "Processing chromosome C13716\r\n", "INFO [2014-03-08 06:12:35,283] [Preprocessor.java:241] [main] Processing chromosome C1373\r\n", "Processing chromosome C1373\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:35,328] [Preprocessor.java:241] [main] Processing chromosome C13732\r\n", "Processing chromosome C13732\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:35,390] [Preprocessor.java:241] [main] Processing chromosome C13786\r\n", "Processing chromosome C13786\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:35,440] [Preprocessor.java:241] [main] Processing chromosome C13810\r\n", "Processing chromosome C13810\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:35,507] [Preprocessor.java:241] [main] Processing chromosome C13834\r\n", "Processing chromosome C13834\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:35,525] [Preprocessor.java:241] [main] Processing chromosome C13854\r\n", "Processing chromosome C13854\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:35,588] [Preprocessor.java:241] [main] Processing chromosome C13860\r\n", "Processing chromosome C13860\r\n", "INFO [2014-03-08 06:12:35,605] [Preprocessor.java:241] [main] Processing chromosome C13868\r\n", "Processing chromosome C13868\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:35,664] [Preprocessor.java:241] [main] Processing chromosome C13874\r\n", "Processing chromosome C13874\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:35,681] [Preprocessor.java:241] [main] Processing chromosome C13878\r\n", "Processing chromosome C13878\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:35,758] [Preprocessor.java:241] [main] Processing chromosome C13888\r\n", "Processing chromosome C13888\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:35,816] [Preprocessor.java:241] [main] Processing chromosome C1389\r\n", "Processing chromosome C1389\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:35,877] [Preprocessor.java:241] [main] Processing chromosome C13904\r\n", "Processing chromosome C13904\r\n", "INFO [2014-03-08 06:12:35,899] [Preprocessor.java:241] [main] Processing chromosome C13908\r\n", "Processing chromosome C13908\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:35,938] [Preprocessor.java:241] [main] Processing chromosome C13916\r\n", "Processing chromosome C13916\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:36,003] [Preprocessor.java:241] [main] Processing chromosome C13930\r\n", "Processing chromosome C13930\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:36,040] [Preprocessor.java:241] [main] Processing chromosome C13940\r\n", "Processing chromosome C13940\r\n", "INFO [2014-03-08 06:12:36,084] [Preprocessor.java:241] [main] Processing chromosome C13950\r\n", "Processing chromosome C13950\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:36,117] [Preprocessor.java:241] [main] Processing chromosome C13992\r\n", "Processing chromosome C13992\r\n", "INFO [2014-03-08 06:12:36,143] [Preprocessor.java:241] [main] Processing chromosome C14008\r\n", "Processing chromosome C14008\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:36,169] [Preprocessor.java:241] [main] Processing chromosome C14022\r\n", "Processing chromosome C14022\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:36,227] [Preprocessor.java:241] [main] Processing chromosome C14066\r\n", "Processing chromosome C14066\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:36,261] [Preprocessor.java:241] [main] Processing chromosome C14086\r\n", "Processing chromosome C14086\r\n", "INFO [2014-03-08 06:12:36,279] [Preprocessor.java:241] [main] Processing chromosome C14104\r\n", "Processing chromosome C14104\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:36,354] [Preprocessor.java:241] [main] Processing chromosome C14108\r\n", "Processing chromosome C14108\r\n", "INFO [2014-03-08 06:12:36,396] [Preprocessor.java:241] [main] Processing chromosome C14128\r\n", "Processing chromosome C14128\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:36,440] [Preprocessor.java:241] [main] Processing chromosome C14162\r\n", "Processing chromosome C14162\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:36,480] [Preprocessor.java:241] [main] Processing chromosome C14170\r\n", "Processing chromosome C14170\r\n", "INFO [2014-03-08 06:12:36,496] [Preprocessor.java:241] [main] Processing chromosome C14184\r\n", "Processing chromosome C14184\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:36,566] [Preprocessor.java:241] [main] Processing chromosome C14186\r\n", "Processing chromosome C14186\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:36,627] [Preprocessor.java:241] [main] Processing chromosome C14214\r\n", "Processing chromosome C14214\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:36,679] [Preprocessor.java:241] [main] Processing chromosome C14226\r\n", "Processing chromosome C14226\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:36,718] [Preprocessor.java:241] [main] Processing chromosome C14228\r\n", "Processing chromosome C14228\r\n", "INFO [2014-03-08 06:12:36,745] [Preprocessor.java:241] [main] Processing chromosome C14248\r\n", "Processing chromosome C14248\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:36,799] [Preprocessor.java:241] [main] Processing chromosome C14276\r\n", "Processing chromosome C14276\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:36,815] [Preprocessor.java:241] [main] Processing chromosome C14282\r\n", "Processing chromosome C14282\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:36,871] [Preprocessor.java:241] [main] Processing chromosome C14304\r\n", "Processing chromosome C14304\r\n", "INFO [2014-03-08 06:12:36,887] [Preprocessor.java:241] [main] Processing chromosome C14326\r\n", "Processing chromosome C14326\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:36,934] [Preprocessor.java:241] [main] Processing chromosome C14340\r\n", "Processing chromosome C14340\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:37,003] [Preprocessor.java:241] [main] Processing chromosome C14362\r\n", "Processing chromosome C14362\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:37,077] [Preprocessor.java:241] [main] Processing chromosome C14366\r\n", "Processing chromosome C14366\r\n", "INFO [2014-03-08 06:12:37,106] [Preprocessor.java:241] [main] Processing chromosome C14378\r\n", "Processing chromosome C14378\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:37,131] [Preprocessor.java:241] [main] Processing chromosome C14386\r\n", "Processing chromosome C14386\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:37,201] [Preprocessor.java:241] [main] Processing chromosome C14400\r\n", "Processing chromosome C14400\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:37,263] [Preprocessor.java:241] [main] Processing chromosome C14418\r\n", "Processing chromosome C14418\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:37,328] [Preprocessor.java:241] [main] Processing chromosome C14424\r\n", "Processing chromosome C14424\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:37,390] [Preprocessor.java:241] [main] Processing chromosome C14432\r\n", "Processing chromosome C14432\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:37,462] [Preprocessor.java:241] [main] Processing chromosome C14434\r\n", "Processing chromosome C14434\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:37,520] [Preprocessor.java:241] [main] Processing chromosome C14446\r\n", "Processing chromosome C14446\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:37,574] [Preprocessor.java:241] [main] Processing chromosome C14450\r\n", "Processing chromosome C14450\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:37,616] [Preprocessor.java:241] [main] Processing chromosome C14454\r\n", "Processing chromosome C14454\r\n", "INFO [2014-03-08 06:12:37,632] [Preprocessor.java:241] [main] Processing chromosome C14468\r\n", "Processing chromosome C14468\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:37,695] [Preprocessor.java:241] [main] Processing chromosome C14478\r\n", "Processing chromosome C14478\r\n", "INFO [2014-03-08 06:12:37,712] [Preprocessor.java:241] [main] Processing chromosome C14484\r\n", "Processing chromosome C14484\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:37,764] [Preprocessor.java:241] [main] Processing chromosome C14486\r\n", "Processing chromosome C14486\r\n", "INFO [2014-03-08 06:12:37,784] [Preprocessor.java:241] [main] Processing chromosome C14498\r\n", "Processing chromosome C14498\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:37,843] [Preprocessor.java:241] [main] Processing chromosome C14510\r\n", "Processing chromosome C14510\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:37,881] [Preprocessor.java:241] [main] Processing chromosome C14520\r\n", "Processing chromosome C14520\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:37,918] [Preprocessor.java:241] [main] Processing chromosome C14528\r\n", "Processing chromosome C14528\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:37,957] [Preprocessor.java:241] [main] Processing chromosome C14542\r\n", "Processing chromosome C14542\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:38,001] [Preprocessor.java:241] [main] Processing chromosome C14546\r\n", "Processing chromosome C14546\r\n", "INFO [2014-03-08 06:12:38,022] [Preprocessor.java:241] [main] Processing chromosome C14560\r\n", "Processing chromosome C14560\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:38,086] [Preprocessor.java:241] [main] Processing chromosome C14566\r\n", "Processing chromosome C14566\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:38,140] [Preprocessor.java:241] [main] Processing chromosome C14568\r\n", "Processing chromosome C14568\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:38,196] [Preprocessor.java:241] [main] Processing chromosome C14588\r\n", "Processing chromosome C14588\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:38,224] [Preprocessor.java:241] [main] Processing chromosome C14614\r\n", "Processing chromosome C14614\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:38,281] [Preprocessor.java:241] [main] Processing chromosome C14626\r\n", "Processing chromosome C14626\r\n", "INFO [2014-03-08 06:12:38,294] [Preprocessor.java:241] [main] Processing chromosome C14636\r\n", "Processing chromosome C14636\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:38,342] [Preprocessor.java:241] [main] Processing chromosome C14638\r\n", "Processing chromosome C14638\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:38,378] [Preprocessor.java:241] [main] Processing chromosome C14652\r\n", "Processing chromosome C14652\r\n", "INFO [2014-03-08 06:12:38,399] [Preprocessor.java:241] [main] Processing chromosome C14668\r\n", "Processing chromosome C14668\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:38,435] [Preprocessor.java:241] [main] Processing chromosome C14678\r\n", "Processing chromosome C14678\r\n", "INFO [2014-03-08 06:12:38,451] [Preprocessor.java:241] [main] Processing chromosome C14686\r\n", "Processing chromosome C14686\r\n", "INFO [2014-03-08 06:12:38,470] [Preprocessor.java:241] [main] Processing chromosome C14692\r\n", "Processing chromosome C14692\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:38,521] [Preprocessor.java:241] [main] Processing chromosome C14702\r\n", "Processing chromosome C14702\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:38,544] [Preprocessor.java:241] [main] Processing chromosome C14704\r\n", "Processing chromosome C14704\r\n", "INFO [2014-03-08 06:12:38,557] [Preprocessor.java:241] [main] Processing chromosome C14706\r\n", "Processing chromosome C14706\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:38,623] [Preprocessor.java:241] [main] Processing chromosome C14716\r\n", "Processing chromosome C14716\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:38,636] [Preprocessor.java:241] [main] Processing chromosome C14718\r\n", "Processing chromosome C14718\r\n", "INFO [2014-03-08 06:12:38,656] [Preprocessor.java:241] [main] Processing chromosome C14724\r\n", "Processing chromosome C14724\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:38,717] [Preprocessor.java:241] [main] Processing chromosome C14734\r\n", "Processing chromosome C14734\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:38,776] [Preprocessor.java:241] [main] Processing chromosome C14744\r\n", "Processing chromosome C14744\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:38,842] [Preprocessor.java:241] [main] Processing chromosome C14746\r\n", "Processing chromosome C14746\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:38,880] [Preprocessor.java:241] [main] Processing chromosome C14774\r\n", "Processing chromosome C14774\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:38,916] [Preprocessor.java:241] [main] Processing chromosome C14782\r\n", "Processing chromosome C14782\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:38,966] [Preprocessor.java:241] [main] Processing chromosome C14788\r\n", "Processing chromosome C14788\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:39,026] [Preprocessor.java:241] [main] Processing chromosome C14790\r\n", "Processing chromosome C14790\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:39,091] [Preprocessor.java:241] [main] Processing chromosome C14800\r\n", "Processing chromosome C14800\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:39,130] [Preprocessor.java:241] [main] Processing chromosome C14818\r\n", "Processing chromosome C14818\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:39,210] [Preprocessor.java:241] [main] Processing chromosome C14822\r\n", "Processing chromosome C14822\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:39,243] [Preprocessor.java:241] [main] Processing chromosome C14832\r\n", "Processing chromosome C14832\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:39,299] [Preprocessor.java:241] [main] Processing chromosome C14848\r\n", "Processing chromosome C14848\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:39,369] [Preprocessor.java:241] [main] Processing chromosome C14852\r\n", "Processing chromosome C14852\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:39,411] [Preprocessor.java:241] [main] Processing chromosome C14858\r\n", "Processing chromosome C14858\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:39,471] [Preprocessor.java:241] [main] Processing chromosome C14868\r\n", "Processing chromosome C14868\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:39,535] [Preprocessor.java:241] [main] Processing chromosome C14880\r\n", "Processing chromosome C14880\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:39,609] [Preprocessor.java:241] [main] Processing chromosome C14902\r\n", "Processing chromosome C14902\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:39,687] [Preprocessor.java:241] [main] Processing chromosome C14906\r\n", "Processing chromosome C14906\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:39,744] [Preprocessor.java:241] [main] Processing chromosome C14910\r\n", "Processing chromosome C14910\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:39,797] [Preprocessor.java:241] [main] Processing chromosome C14924\r\n", "Processing chromosome C14924\r\n", "INFO [2014-03-08 06:12:39,830] [Preprocessor.java:241] [main] Processing chromosome C14940\r\n", "Processing chromosome C14940\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:39,879] [Preprocessor.java:241] [main] Processing chromosome C14942\r\n", "Processing chromosome C14942\r\n", "INFO [2014-03-08 06:12:39,895] [Preprocessor.java:241] [main] Processing chromosome C14944\r\n", "Processing chromosome C14944\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:39,938] [Preprocessor.java:241] [main] Processing chromosome C14946\r\n", "Processing chromosome C14946\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:39,989] [Preprocessor.java:241] [main] Processing chromosome C14952\r\n", "Processing chromosome C14952\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:40,002] [Preprocessor.java:241] [main] Processing chromosome C14958\r\n", "Processing chromosome C14958\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:40,056] [Preprocessor.java:241] [main] Processing chromosome C14966\r\n", "Processing chromosome C14966\r\n", "INFO [2014-03-08 06:12:40,078] [Preprocessor.java:241] [main] Processing chromosome C14984\r\n", "Processing chromosome C14984\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:40,132] [Preprocessor.java:241] [main] Processing chromosome C15006\r\n", "Processing chromosome C15006\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:40,169] [Preprocessor.java:241] [main] Processing chromosome C15022\r\n", "Processing chromosome C15022\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:40,213] [Preprocessor.java:241] [main] Processing chromosome C15024\r\n", "Processing chromosome C15024\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:40,264] [Preprocessor.java:241] [main] Processing chromosome C1503\r\n", "Processing chromosome C1503\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:40,326] [Preprocessor.java:241] [main] Processing chromosome C15064\r\n", "Processing chromosome C15064\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:40,393] [Preprocessor.java:241] [main] Processing chromosome C15086\r\n", "Processing chromosome C15086\r\n", "INFO [2014-03-08 06:12:40,410] [Preprocessor.java:241] [main] Processing chromosome C15112\r\n", "Processing chromosome C15112\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:40,447] [Preprocessor.java:241] [main] Processing chromosome C15138\r\n", "Processing chromosome C15138\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:40,473] [Preprocessor.java:241] [main] Processing chromosome C15142\r\n", "Processing chromosome C15142\r\n", "INFO [2014-03-08 06:12:40,505] [Preprocessor.java:241] [main] Processing chromosome C15154\r\n", "Processing chromosome C15154\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:40,526] [Preprocessor.java:241] [main] Processing chromosome C15160\r\n", "Processing chromosome C15160\r\n", "INFO [2014-03-08 06:12:40,533] [Preprocessor.java:241] [main] Processing chromosome C15162\r\n", "Processing chromosome C15162\r\n", "INFO [2014-03-08 06:12:40,564] [Preprocessor.java:241] [main] Processing chromosome C15164\r\n", "Processing chromosome C15164\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:40,577] [Preprocessor.java:241] [main] Processing chromosome C15180\r\n", "Processing chromosome C15180\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:40,636] [Preprocessor.java:241] [main] Processing chromosome C15188\r\n", "Processing chromosome C15188\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:40,692] [Preprocessor.java:241] [main] Processing chromosome C15202\r\n", "Processing chromosome C15202\r\n", "INFO [2014-03-08 06:12:40,723] [Preprocessor.java:241] [main] Processing chromosome C15240\r\n", "Processing chromosome C15240\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:40,760] [Preprocessor.java:241] [main] Processing chromosome C15242\r\n", "Processing chromosome C15242\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:40,810] [Preprocessor.java:241] [main] Processing chromosome C15260\r\n", "Processing chromosome C15260\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:40,874] [Preprocessor.java:241] [main] Processing chromosome C15276\r\n", "Processing chromosome C15276\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:40,887] [Preprocessor.java:241] [main] Processing chromosome C1531\r\n", "Processing chromosome C1531\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:40,952] [Preprocessor.java:241] [main] Processing chromosome C15324\r\n", "Processing chromosome C15324\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:40,989] [Preprocessor.java:241] [main] Processing chromosome C15334\r\n", "Processing chromosome C15334\r\n", "INFO [2014-03-08 06:12:41,002] [Preprocessor.java:241] [main] Processing chromosome C15338\r\n", "Processing chromosome C15338\r\n", "INFO [2014-03-08 06:12:41,031] [Preprocessor.java:241] [main] Processing chromosome C15340\r\n", "Processing chromosome C15340\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:41,085] [Preprocessor.java:241] [main] Processing chromosome C15342\r\n", "Processing chromosome C15342\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:41,099] [Preprocessor.java:241] [main] Processing chromosome C15346\r\n", "Processing chromosome C15346\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:41,143] [Preprocessor.java:241] [main] Processing chromosome C15348\r\n", "Processing chromosome C15348\r\n", "INFO [2014-03-08 06:12:41,156] [Preprocessor.java:241] [main] Processing chromosome C1535\r\n", "Processing chromosome C1535\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:41,194] [Preprocessor.java:241] [main] Processing chromosome C15352\r\n", "Processing chromosome C15352\r\n", "INFO [2014-03-08 06:12:41,226] [Preprocessor.java:241] [main] Processing chromosome C15386\r\n", "Processing chromosome C15386\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:41,277] [Preprocessor.java:241] [main] Processing chromosome C15404\r\n", "Processing chromosome C15404\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:41,317] [Preprocessor.java:241] [main] Processing chromosome C15424\r\n", "Processing chromosome C15424\r\n", "INFO [2014-03-08 06:12:41,329] [Preprocessor.java:241] [main] Processing chromosome C15430\r\n", "Processing chromosome C15430\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:41,366] [Preprocessor.java:241] [main] Processing chromosome C15436\r\n", "Processing chromosome C15436\r\n", "INFO [2014-03-08 06:12:41,379] [Preprocessor.java:241] [main] Processing chromosome C15440\r\n", "Processing chromosome C15440\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:41,431] [Preprocessor.java:241] [main] Processing chromosome C15448\r\n", "Processing chromosome C15448\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:41,482] [Preprocessor.java:241] [main] Processing chromosome C15458\r\n", "Processing chromosome C15458\r\n", "INFO [2014-03-08 06:12:41,499] [Preprocessor.java:241] [main] Processing chromosome C15460\r\n", "Processing chromosome C15460\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:41,543] [Preprocessor.java:241] [main] Processing chromosome C15462\r\n", "Processing chromosome C15462\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:41,555] [Preprocessor.java:241] [main] Processing chromosome C15466\r\n", "Processing chromosome C15466\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:41,621] [Preprocessor.java:241] [main] Processing chromosome C15498\r\n", "Processing chromosome C15498\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:41,682] [Preprocessor.java:241] [main] Processing chromosome C15520\r\n", "Processing chromosome C15520\r\n", "INFO [2014-03-08 06:12:41,705] [Preprocessor.java:241] [main] Processing chromosome C15522\r\n", "Processing chromosome C15522\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:41,757] [Preprocessor.java:241] [main] Processing chromosome C1553\r\n", "Processing chromosome C1553\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:41,789] [Preprocessor.java:241] [main] Processing chromosome C15538\r\n", "Processing chromosome C15538\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:41,862] [Preprocessor.java:241] [main] Processing chromosome C15544\r\n", "Processing chromosome C15544\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:41,910] [Preprocessor.java:241] [main] Processing chromosome C15552\r\n", "Processing chromosome C15552\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:41,966] [Preprocessor.java:241] [main] Processing chromosome C15560\r\n", "Processing chromosome C15560\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:42,028] [Preprocessor.java:241] [main] Processing chromosome C15568\r\n", "Processing chromosome C15568\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:42,078] [Preprocessor.java:241] [main] Processing chromosome C15592\r\n", "Processing chromosome C15592\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:42,135] [Preprocessor.java:241] [main] Processing chromosome C15646\r\n", "Processing chromosome C15646\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:42,194] [Preprocessor.java:241] [main] Processing chromosome C15662\r\n", "Processing chromosome C15662\r\n", "INFO [2014-03-08 06:12:42,206] [Preprocessor.java:241] [main] Processing chromosome C15678\r\n", "Processing chromosome C15678\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:42,259] [Preprocessor.java:241] [main] Processing chromosome C15686\r\n", "Processing chromosome C15686\r\n", "INFO [2014-03-08 06:12:42,272] [Preprocessor.java:241] [main] Processing chromosome C15696\r\n", "Processing chromosome C15696\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:42,303] [Preprocessor.java:241] [main] Processing chromosome C15720\r\n", "Processing chromosome C15720\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:42,364] [Preprocessor.java:241] [main] Processing chromosome C15740\r\n", "Processing chromosome C15740\r\n", "INFO [2014-03-08 06:12:42,375] [Preprocessor.java:241] [main] Processing chromosome C15750\r\n", "Processing chromosome C15750\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:42,421] [Preprocessor.java:241] [main] Processing chromosome C15766\r\n", "Processing chromosome C15766\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:42,507] [Preprocessor.java:241] [main] Processing chromosome C15768\r\n", "Processing chromosome C15768\r\n", "INFO [2014-03-08 06:12:42,518] [Preprocessor.java:241] [main] Processing chromosome C15788\r\n", "Processing chromosome C15788\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:42,536] [Preprocessor.java:241] [main] Processing chromosome C15798\r\n", "Processing chromosome C15798\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:42,597] [Preprocessor.java:241] [main] Processing chromosome C15816\r\n", "Processing chromosome C15816\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:42,655] [Preprocessor.java:241] [main] Processing chromosome C15818\r\n", "Processing chromosome C15818\r\n", "INFO [2014-03-08 06:12:42,683] [Preprocessor.java:241] [main] Processing chromosome C15838\r\n", "Processing chromosome C15838\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:42,709] [Preprocessor.java:241] [main] Processing chromosome C15846\r\n", "Processing chromosome C15846\r\n", "INFO [2014-03-08 06:12:42,733] [Preprocessor.java:241] [main] Processing chromosome C15848\r\n", "Processing chromosome C15848\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:42,786] [Preprocessor.java:241] [main] Processing chromosome C15860\r\n", "Processing chromosome C15860\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:42,817] [Preprocessor.java:241] [main] Processing chromosome C15892\r\n", "Processing chromosome C15892\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:42,853] [Preprocessor.java:241] [main] Processing chromosome C15894\r\n", "Processing chromosome C15894\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:42,908] [Preprocessor.java:241] [main] Processing chromosome C15902\r\n", "Processing chromosome C15902\r\n", "INFO [2014-03-08 06:12:42,940] [Preprocessor.java:241] [main] Processing chromosome C15904\r\n", "Processing chromosome C15904\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:42,995] [Preprocessor.java:241] [main] Processing chromosome C15922\r\n", "Processing chromosome C15922\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:43,012] [Preprocessor.java:241] [main] Processing chromosome C15932\r\n", "Processing chromosome C15932\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:43,074] [Preprocessor.java:241] [main] Processing chromosome C15934\r\n", "Processing chromosome C15934\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:43,121] [Preprocessor.java:241] [main] Processing chromosome C15952\r\n", "Processing chromosome C15952\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:43,188] [Preprocessor.java:241] [main] Processing chromosome C15982\r\n", "Processing chromosome C15982\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:43,236] [Preprocessor.java:241] [main] Processing chromosome C15992\r\n", "Processing chromosome C15992\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:43,299] [Preprocessor.java:241] [main] Processing chromosome C15994\r\n", "Processing chromosome C15994\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:43,358] [Preprocessor.java:241] [main] Processing chromosome C16002\r\n", "Processing chromosome C16002\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:43,417] [Preprocessor.java:241] [main] Processing chromosome C16004\r\n", "Processing chromosome C16004\r\n", "INFO [2014-03-08 06:12:43,445] [Preprocessor.java:241] [main] Processing chromosome C16010\r\n", "Processing chromosome C16010\r\n", "INFO [2014-03-08 06:12:43,457] [Preprocessor.java:241] [main] Processing chromosome C16014\r\n", "Processing chromosome C16014\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:43,483] [Preprocessor.java:241] [main] Processing chromosome C16022\r\n", "Processing chromosome C16022\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:43,537] [Preprocessor.java:241] [main] Processing chromosome C16024\r\n", "Processing chromosome C16024\r\n", "INFO [2014-03-08 06:12:43,557] [Preprocessor.java:241] [main] Processing chromosome C16042\r\n", "Processing chromosome C16042\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:43,621] [Preprocessor.java:241] [main] Processing chromosome C16058\r\n", "Processing chromosome C16058\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:43,673] [Preprocessor.java:241] [main] Processing chromosome C16062\r\n", "Processing chromosome C16062\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:43,696] [Preprocessor.java:241] [main] Processing chromosome C16066\r\n", "Processing chromosome C16066\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:43,744] [Preprocessor.java:241] [main] Processing chromosome C16070\r\n", "Processing chromosome C16070\r\n", "INFO [2014-03-08 06:12:43,767] [Preprocessor.java:241] [main] Processing chromosome C16084\r\n", "Processing chromosome C16084\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:43,781] [Preprocessor.java:241] [main] Processing chromosome C16088\r\n", "Processing chromosome C16088\r\n", "INFO [2014-03-08 06:12:43,815] [Preprocessor.java:241] [main] Processing chromosome C16094\r\n", "Processing chromosome C16094\r\n", "INFO [2014-03-08 06:12:43,825] [Preprocessor.java:241] [main] Processing chromosome C16102\r\n", "Processing chromosome C16102\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:43,883] [Preprocessor.java:241] [main] Processing chromosome C16106\r\n", "Processing chromosome C16106\r\n", "INFO [2014-03-08 06:12:43,895] [Preprocessor.java:241] [main] Processing chromosome C16108\r\n", "Processing chromosome C16108\r\n", "INFO [2014-03-08 06:12:43,912] [Preprocessor.java:241] [main] Processing chromosome C16110\r\n", "Processing chromosome C16110\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:43,954] [Preprocessor.java:241] [main] Processing chromosome C16144\r\n", "Processing chromosome C16144\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:44,002] [Preprocessor.java:241] [main] Processing chromosome C1619\r\n", "Processing chromosome C1619\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:44,103] [Preprocessor.java:241] [main] Processing chromosome C16192\r\n", "Processing chromosome C16192\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:44,157] [Preprocessor.java:241] [main] Processing chromosome C16204\r\n", "Processing chromosome C16204\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:44,214] [Preprocessor.java:241] [main] Processing chromosome C16208\r\n", "Processing chromosome C16208\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:44,230] [Preprocessor.java:241] [main] Processing chromosome C16218\r\n", "Processing chromosome C16218\r\n", "INFO [2014-03-08 06:12:44,263] [Preprocessor.java:241] [main] Processing chromosome C1623\r\n", "Processing chromosome C1623\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:44,322] [Preprocessor.java:241] [main] Processing chromosome C16244\r\n", "Processing chromosome C16244\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:44,342] [Preprocessor.java:241] [main] Processing chromosome C16250\r\n", "Processing chromosome C16250\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:44,404] [Preprocessor.java:241] [main] Processing chromosome C16262\r\n", "Processing chromosome C16262\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:44,448] [Preprocessor.java:241] [main] Processing chromosome C16280\r\n", "Processing chromosome C16280\r\n", "INFO [2014-03-08 06:12:44,477] [Preprocessor.java:241] [main] Processing chromosome C16296\r\n", "Processing chromosome C16296\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:44,520] [Preprocessor.java:241] [main] Processing chromosome C16312\r\n", "Processing chromosome C16312\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:44,544] [Preprocessor.java:241] [main] Processing chromosome C16318\r\n", "Processing chromosome C16318\r\n", "INFO [2014-03-08 06:12:44,556] [Preprocessor.java:241] [main] Processing chromosome C16338\r\n", "Processing chromosome C16338\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:44,659] [Preprocessor.java:241] [main] Processing chromosome C16390\r\n", "Processing chromosome C16390\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:44,730] [Preprocessor.java:241] [main] Processing chromosome C16392\r\n", "Processing chromosome C16392\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:44,769] [Preprocessor.java:241] [main] Processing chromosome C16400\r\n", "Processing chromosome C16400\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:44,822] [Preprocessor.java:241] [main] Processing chromosome C16404\r\n", "Processing chromosome C16404\r\n", "INFO [2014-03-08 06:12:44,842] [Preprocessor.java:241] [main] Processing chromosome C16420\r\n", "Processing chromosome C16420\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:44,888] [Preprocessor.java:241] [main] Processing chromosome C16434\r\n", "Processing chromosome C16434\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:44,922] [Preprocessor.java:241] [main] Processing chromosome C16446\r\n", "Processing chromosome C16446\r\n", "INFO [2014-03-08 06:12:44,946] [Preprocessor.java:241] [main] Processing chromosome C16458\r\n", "Processing chromosome C16458\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:45,003] [Preprocessor.java:241] [main] Processing chromosome C16486\r\n", "Processing chromosome C16486\r\n", "INFO [2014-03-08 06:12:45,043] [Preprocessor.java:241] [main] Processing chromosome C16492\r\n", "Processing chromosome C16492\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:45,053] [Preprocessor.java:241] [main] Processing chromosome C16512\r\n", "Processing chromosome C16512\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:45,106] [Preprocessor.java:241] [main] Processing chromosome C16516\r\n", "Processing chromosome C16516\r\n", "INFO [2014-03-08 06:12:45,133] [Preprocessor.java:241] [main] Processing chromosome C16520\r\n", "Processing chromosome C16520\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:45,193] [Preprocessor.java:241] [main] Processing chromosome C16540\r\n", "Processing chromosome C16540\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:45,230] [Preprocessor.java:241] [main] Processing chromosome C16542\r\n", "Processing chromosome C16542\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:45,258] [Preprocessor.java:241] [main] Processing chromosome C16554\r\n", "Processing chromosome C16554\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:45,319] [Preprocessor.java:241] [main] Processing chromosome C16556\r\n", "Processing chromosome C16556\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:45,363] [Preprocessor.java:241] [main] Processing chromosome C16558\r\n", "Processing chromosome C16558\r\n", "INFO [2014-03-08 06:12:45,387] [Preprocessor.java:241] [main] Processing chromosome C16564\r\n", "Processing chromosome C16564\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:45,424] [Preprocessor.java:241] [main] Processing chromosome C16566\r\n", "Processing chromosome C16566\r\n", "INFO [2014-03-08 06:12:45,441] [Preprocessor.java:241] [main] Processing chromosome C16582\r\n", "Processing chromosome C16582\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:45,493] [Preprocessor.java:241] [main] Processing chromosome C16586\r\n", "Processing chromosome C16586\r\n", "INFO [2014-03-08 06:12:45,517] [Preprocessor.java:241] [main] Processing chromosome C16604\r\n", "Processing chromosome C16604\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:45,537] [Preprocessor.java:241] [main] Processing chromosome C16606\r\n", "Processing chromosome C16606\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:45,593] [Preprocessor.java:241] [main] Processing chromosome C16608\r\n", "Processing chromosome C16608\r\n", "INFO [2014-03-08 06:12:45,614] [Preprocessor.java:241] [main] Processing chromosome C1661\r\n", "Processing chromosome C1661\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:45,682] [Preprocessor.java:241] [main] Processing chromosome C16612\r\n", "Processing chromosome C16612\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:45,693] [Preprocessor.java:241] [main] Processing chromosome C16622\r\n", "Processing chromosome C16622\r\n", "INFO [2014-03-08 06:12:45,727] [Preprocessor.java:241] [main] Processing chromosome C16636\r\n", "Processing chromosome C16636\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:45,783] [Preprocessor.java:241] [main] Processing chromosome C16650\r\n", "Processing chromosome C16650\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:45,793] [Preprocessor.java:241] [main] Processing chromosome C16666\r\n", "Processing chromosome C16666\r\n", "INFO [2014-03-08 06:12:45,808] [Preprocessor.java:241] [main] Processing chromosome C16700\r\n", "Processing chromosome C16700\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:45,864] [Preprocessor.java:241] [main] Processing chromosome C16710\r\n", "Processing chromosome C16710\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:45,915] [Preprocessor.java:241] [main] Processing chromosome C16760\r\n", "Processing chromosome C16760\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:45,986] [Preprocessor.java:241] [main] Processing chromosome C16766\r\n", "Processing chromosome C16766\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:46,002] [Preprocessor.java:241] [main] Processing chromosome C16786\r\n", "Processing chromosome C16786\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:46,063] [Preprocessor.java:241] [main] Processing chromosome C16796\r\n", "Processing chromosome C16796\r\n", "INFO [2014-03-08 06:12:46,074] [Preprocessor.java:241] [main] Processing chromosome C16798\r\n", "Processing chromosome C16798\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:46,136] [Preprocessor.java:241] [main] Processing chromosome C16820\r\n", "Processing chromosome C16820\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:46,169] [Preprocessor.java:241] [main] Processing chromosome C16854\r\n", "Processing chromosome C16854\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:46,215] [Preprocessor.java:241] [main] Processing chromosome C16864\r\n", "Processing chromosome C16864\r\n", "INFO [2014-03-08 06:12:46,249] [Preprocessor.java:241] [main] Processing chromosome C16870\r\n", "Processing chromosome C16870\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:46,294] [Preprocessor.java:241] [main] Processing chromosome C16902\r\n", "Processing chromosome C16902\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:46,333] [Preprocessor.java:241] [main] Processing chromosome C16936\r\n", "Processing chromosome C16936\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:46,393] [Preprocessor.java:241] [main] Processing chromosome C16948\r\n", "Processing chromosome C16948\r\n", "INFO [2014-03-08 06:12:46,416] [Preprocessor.java:241] [main] Processing chromosome C16958\r\n", "Processing chromosome C16958\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:46,433] [Preprocessor.java:241] [main] Processing chromosome C16982\r\n", "Processing chromosome C16982\r\n", "INFO [2014-03-08 06:12:46,442] [Preprocessor.java:241] [main] Processing chromosome C17000\r\n", "Processing chromosome C17000\r\n", "INFO [2014-03-08 06:12:46,463] [Preprocessor.java:241] [main] Processing chromosome C17016\r\n", "Processing chromosome C17016\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:46,496] [Preprocessor.java:241] [main] Processing chromosome C17028\r\n", "Processing chromosome C17028\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:46,541] [Preprocessor.java:241] [main] Processing chromosome C17036\r\n", "Processing chromosome C17036\r\n", "INFO [2014-03-08 06:12:46,562] [Preprocessor.java:241] [main] Processing chromosome C17038\r\n", "Processing chromosome C17038\r\n", "INFO [2014-03-08 06:12:46,576] [Preprocessor.java:241] [main] Processing chromosome C17044\r\n", "Processing chromosome C17044\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:46,592] [Preprocessor.java:241] [main] Processing chromosome C17052\r\n", "Processing chromosome C17052\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:46,644] [Preprocessor.java:241] [main] Processing chromosome C17056\r\n", "Processing chromosome C17056\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:46,690] [Preprocessor.java:241] [main] Processing chromosome C17064\r\n", "Processing chromosome C17064\r\n", "INFO [2014-03-08 06:12:46,728] [Preprocessor.java:241] [main] Processing chromosome C17076\r\n", "Processing chromosome C17076\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:46,751] [Preprocessor.java:241] [main] Processing chromosome C17082\r\n", "Processing chromosome C17082\r\n", "INFO [2014-03-08 06:12:46,759] [Preprocessor.java:241] [main] Processing chromosome C17098\r\n", "Processing chromosome C17098\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:46,794] [Preprocessor.java:241] [main] Processing chromosome C17100\r\n", "Processing chromosome C17100\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:46,867] [Preprocessor.java:241] [main] Processing chromosome C17102\r\n", "Processing chromosome C17102\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:46,915] [Preprocessor.java:241] [main] Processing chromosome C17108\r\n", "Processing chromosome C17108\r\n", "INFO [2014-03-08 06:12:46,959] [Preprocessor.java:241] [main] Processing chromosome C17130\r\n", "Processing chromosome C17130\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:46,979] [Preprocessor.java:241] [main] Processing chromosome C17134\r\n", "Processing chromosome C17134\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:47,035] [Preprocessor.java:241] [main] Processing chromosome C17150\r\n", "Processing chromosome C17150\r\n", "INFO [2014-03-08 06:12:47,061] [Preprocessor.java:241] [main] Processing chromosome C17158\r\n", "Processing chromosome C17158\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:47,117] [Preprocessor.java:241] [main] Processing chromosome C17170\r\n", "Processing chromosome C17170\r\n", "INFO [2014-03-08 06:12:47,137] [Preprocessor.java:241] [main] Processing chromosome C17178\r\n", "Processing chromosome C17178\r\n", "INFO [2014-03-08 06:12:47,157] [Preprocessor.java:241] [main] Processing chromosome C17186\r\n", "Processing chromosome C17186\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:47,190] [Preprocessor.java:241] [main] Processing chromosome C17212\r\n", "Processing chromosome C17212\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:47,219] [Preprocessor.java:241] [main] Processing chromosome C17244\r\n", "Processing chromosome C17244\r\n", "INFO [2014-03-08 06:12:47,241] [Preprocessor.java:241] [main] Processing chromosome C17262\r\n", "Processing chromosome C17262\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:47,271] [Preprocessor.java:241] [main] Processing chromosome C17274\r\n", "Processing chromosome C17274\r\n", "INFO [2014-03-08 06:12:47,306] [Preprocessor.java:241] [main] Processing chromosome C17316\r\n", "Processing chromosome C17316\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:47,352] [Preprocessor.java:241] [main] Processing chromosome C17332\r\n", "Processing chromosome C17332\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:47,387] [Preprocessor.java:241] [main] Processing chromosome C17348\r\n", "Processing chromosome C17348\r\n", "INFO [2014-03-08 06:12:47,401] [Preprocessor.java:241] [main] Processing chromosome C17358\r\n", "Processing chromosome C17358\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:47,466] [Preprocessor.java:241] [main] Processing chromosome C17362\r\n", "Processing chromosome C17362\r\n", "INFO [2014-03-08 06:12:47,481] [Preprocessor.java:241] [main] Processing chromosome C17376\r\n", "Processing chromosome C17376\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:47,522] [Preprocessor.java:241] [main] Processing chromosome C17394\r\n", "Processing chromosome C17394\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:47,542] [Preprocessor.java:241] [main] Processing chromosome C17398\r\n", "Processing chromosome C17398\r\n", "INFO [2014-03-08 06:12:47,550] [Preprocessor.java:241] [main] Processing chromosome C17402\r\n", "Processing chromosome C17402\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:47,611] [Preprocessor.java:241] [main] Processing chromosome C17426\r\n", "Processing chromosome C17426\r\n", "INFO [2014-03-08 06:12:47,633] [Preprocessor.java:241] [main] Processing chromosome C17438\r\n", "Processing chromosome C17438\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:47,647] [Preprocessor.java:241] [main] Processing chromosome C17472\r\n", "Processing chromosome C17472\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:47,699] [Preprocessor.java:241] [main] Processing chromosome C17476\r\n", "Processing chromosome C17476\r\n", "INFO [2014-03-08 06:12:47,739] [Preprocessor.java:241] [main] Processing chromosome C17486\r\n", "Processing chromosome C17486\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:47,772] [Preprocessor.java:241] [main] Processing chromosome C17494\r\n", "Processing chromosome C17494\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:47,836] [Preprocessor.java:241] [main] Processing chromosome C17514\r\n", "Processing chromosome C17514\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:47,930] [Preprocessor.java:241] [main] Processing chromosome C17516\r\n", "Processing chromosome C17516\r\n", "INFO [2014-03-08 06:12:47,946] [Preprocessor.java:241] [main] Processing chromosome C17526\r\n", "Processing chromosome C17526\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:47,992] [Preprocessor.java:241] [main] Processing chromosome C17540\r\n", "Processing chromosome C17540\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:48,025] [Preprocessor.java:241] [main] Processing chromosome C17556\r\n", "Processing chromosome C17556\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:48,065] [Preprocessor.java:241] [main] Processing chromosome C17574\r\n", "Processing chromosome C17574\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:48,119] [Preprocessor.java:241] [main] Processing chromosome C17580\r\n", "Processing chromosome C17580\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:48,177] [Preprocessor.java:241] [main] Processing chromosome C17588\r\n", "Processing chromosome C17588\r\n", "INFO [2014-03-08 06:12:48,190] [Preprocessor.java:241] [main] Processing chromosome C17602\r\n", "Processing chromosome C17602\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:48,211] [Preprocessor.java:241] [main] Processing chromosome C17604\r\n", "Processing chromosome C17604\r\n", "INFO [2014-03-08 06:12:48,244] [Preprocessor.java:241] [main] Processing chromosome C17608\r\n", "Processing chromosome C17608\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:48,271] [Preprocessor.java:241] [main] Processing chromosome C17630\r\n", "Processing chromosome C17630\r\n", "INFO [2014-03-08 06:12:48,296] [Preprocessor.java:241] [main] Processing chromosome C17636\r\n", "Processing chromosome C17636\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:48,343] [Preprocessor.java:241] [main] Processing chromosome C17660\r\n", "Processing chromosome C17660\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:48,370] [Preprocessor.java:241] [main] Processing chromosome C17662\r\n", "Processing chromosome C17662\r\n", "INFO [2014-03-08 06:12:48,396] [Preprocessor.java:241] [main] Processing chromosome C17664\r\n", "Processing chromosome C17664\r\n", "INFO [2014-03-08 06:12:48,405] [Preprocessor.java:241] [main] Processing chromosome C17678\r\n", "Processing chromosome C17678\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:48,447] [Preprocessor.java:241] [main] Processing chromosome C17682\r\n", "Processing chromosome C17682\r\n", "INFO [2014-03-08 06:12:48,454] [Preprocessor.java:241] [main] Processing chromosome C17684\r\n", "Processing chromosome C17684\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:48,485] [Preprocessor.java:241] [main] Processing chromosome C17700\r\n", "Processing chromosome C17700\r\n", "INFO [2014-03-08 06:12:48,493] [Preprocessor.java:241] [main] Processing chromosome C17710\r\n", "Processing chromosome C17710\r\n", "INFO [2014-03-08 06:12:48,514] [Preprocessor.java:241] [main] Processing chromosome C17730\r\n", "Processing chromosome C17730\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:48,534] [Preprocessor.java:241] [main] Processing chromosome C17734\r\n", "Processing chromosome C17734\r\n", "INFO [2014-03-08 06:12:48,547] [Preprocessor.java:241] [main] Processing chromosome C17738\r\n", "Processing chromosome C17738\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:48,599] [Preprocessor.java:241] [main] Processing chromosome C17746\r\n", "Processing chromosome C17746\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:48,656] [Preprocessor.java:241] [main] Processing chromosome C17748\r\n", "Processing chromosome C17748\r\n", "INFO [2014-03-08 06:12:48,671] [Preprocessor.java:241] [main] Processing chromosome C17762\r\n", "Processing chromosome C17762\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:48,713] [Preprocessor.java:241] [main] Processing chromosome C17770\r\n", "Processing chromosome C17770\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:48,735] [Preprocessor.java:241] [main] Processing chromosome C17772\r\n", "Processing chromosome C17772\r\n", "INFO [2014-03-08 06:12:48,743] [Preprocessor.java:241] [main] Processing chromosome C17786\r\n", "Processing chromosome C17786\r\n", "INFO [2014-03-08 06:12:48,771] [Preprocessor.java:241] [main] Processing chromosome C17794\r\n", "Processing chromosome C17794\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:48,798] [Preprocessor.java:241] [main] Processing chromosome C1781\r\n", "Processing chromosome C1781\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:48,851] [Preprocessor.java:241] [main] Processing chromosome C17814\r\n", "Processing chromosome C17814\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:48,883] [Preprocessor.java:241] [main] Processing chromosome C17840\r\n", "Processing chromosome C17840\r\n", "INFO [2014-03-08 06:12:48,898] [Preprocessor.java:241] [main] Processing chromosome C17852\r\n", "Processing chromosome C17852\r\n", "INFO [2014-03-08 06:12:48,914] [Preprocessor.java:241] [main] Processing chromosome C17854\r\n", "Processing chromosome C17854\r\n", "INFO [2014-03-08 06:12:48,922] [Preprocessor.java:241] [main] Processing chromosome C17888\r\n", "Processing chromosome C17888\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:48,989] [Preprocessor.java:241] [main] Processing chromosome C1789\r\n", "Processing chromosome C1789\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:49,048] [Preprocessor.java:241] [main] Processing chromosome C17896\r\n", "Processing chromosome C17896\r\n", "INFO [2014-03-08 06:12:49,068] [Preprocessor.java:241] [main] Processing chromosome C17906\r\n", "Processing chromosome C17906\r\n", "INFO [2014-03-08 06:12:49,089] [Preprocessor.java:241] [main] Processing chromosome C17940\r\n", "Processing chromosome C17940\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:49,137] [Preprocessor.java:241] [main] Processing chromosome C17944\r\n", "Processing chromosome C17944\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:49,153] [Preprocessor.java:241] [main] Processing chromosome C17946\r\n", "Processing chromosome C17946\r\n", "INFO [2014-03-08 06:12:49,168] [Preprocessor.java:241] [main] Processing chromosome C1795\r\n", "Processing chromosome C1795\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:49,199] [Preprocessor.java:241] [main] Processing chromosome C17950\r\n", "Processing chromosome C17950\r\n", "INFO [2014-03-08 06:12:49,244] [Preprocessor.java:241] [main] Processing chromosome C17960\r\n", "Processing chromosome C17960\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:49,295] [Preprocessor.java:241] [main] Processing chromosome C17998\r\n", "Processing chromosome C17998\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:49,348] [Preprocessor.java:241] [main] Processing chromosome C18004\r\n", "Processing chromosome C18004\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:49,373] [Preprocessor.java:241] [main] Processing chromosome C18008\r\n", "Processing chromosome C18008\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:49,415] [Preprocessor.java:241] [main] Processing chromosome C18010\r\n", "Processing chromosome C18010\r\n", "INFO [2014-03-08 06:12:49,422] [Preprocessor.java:241] [main] Processing chromosome C18046\r\n", "Processing chromosome C18046\r\n", "INFO [2014-03-08 06:12:49,439] [Preprocessor.java:241] [main] Processing chromosome C18050\r\n", "Processing chromosome C18050\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:49,499] [Preprocessor.java:241] [main] Processing chromosome C18054\r\n", "Processing chromosome C18054\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:49,556] [Preprocessor.java:241] [main] Processing chromosome C181\r\n", "Processing chromosome C181\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:49,612] [Preprocessor.java:241] [main] Processing chromosome C18104\r\n", "Processing chromosome C18104\r\n", "INFO [2014-03-08 06:12:49,645] [Preprocessor.java:241] [main] Processing chromosome C18108\r\n", "Processing chromosome C18108\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:49,685] [Preprocessor.java:241] [main] Processing chromosome C18122\r\n", "Processing chromosome C18122\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:49,739] [Preprocessor.java:241] [main] Processing chromosome C18128\r\n", "Processing chromosome C18128\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:49,796] [Preprocessor.java:241] [main] Processing chromosome C18130\r\n", "Processing chromosome C18130\r\n", "INFO [2014-03-08 06:12:49,805] [Preprocessor.java:241] [main] Processing chromosome C18136\r\n", "Processing chromosome C18136\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:49,871] [Preprocessor.java:241] [main] Processing chromosome C18168\r\n", "Processing chromosome C18168\r\n", "INFO [2014-03-08 06:12:49,891] [Preprocessor.java:241] [main] Processing chromosome C18184\r\n", "Processing chromosome C18184\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:49,941] [Preprocessor.java:241] [main] Processing chromosome C18226\r\n", "Processing chromosome C18226\r\n", "INFO [2014-03-08 06:12:49,970] [Preprocessor.java:241] [main] Processing chromosome C18238\r\n", "Processing chromosome C18238\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:50,007] [Preprocessor.java:241] [main] Processing chromosome C18244\r\n", "Processing chromosome C18244\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:50,078] [Preprocessor.java:241] [main] Processing chromosome C18254\r\n", "Processing chromosome C18254\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:50,120] [Preprocessor.java:241] [main] Processing chromosome C18256\r\n", "Processing chromosome C18256\r\n", "INFO [2014-03-08 06:12:50,141] [Preprocessor.java:241] [main] Processing chromosome C18278\r\n", "Processing chromosome C18278\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:50,205] [Preprocessor.java:241] [main] Processing chromosome C18288\r\n", "Processing chromosome C18288\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:50,272] [Preprocessor.java:241] [main] Processing chromosome C18316\r\n", "Processing chromosome C18316\r\n", "INFO [2014-03-08 06:12:50,285] [Preprocessor.java:241] [main] Processing chromosome C1833\r\n", "Processing chromosome C1833\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:50,344] [Preprocessor.java:241] [main] Processing chromosome C18334\r\n", "Processing chromosome C18334\r\n", "INFO [2014-03-08 06:12:50,352] [Preprocessor.java:241] [main] Processing chromosome C18346\r\n", "Processing chromosome C18346\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:50,405] [Preprocessor.java:241] [main] Processing chromosome C18366\r\n", "Processing chromosome C18366\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:50,420] [Preprocessor.java:241] [main] Processing chromosome C18378\r\n", "Processing chromosome C18378\r\n", "INFO [2014-03-08 06:12:50,427] [Preprocessor.java:241] [main] Processing chromosome C18394\r\n", "Processing chromosome C18394\r\n", "INFO [2014-03-08 06:12:50,445] [Preprocessor.java:241] [main] Processing chromosome C18398\r\n", "Processing chromosome C18398\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:50,482] [Preprocessor.java:241] [main] Processing chromosome C18414\r\n", "Processing chromosome C18414\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:50,523] [Preprocessor.java:241] [main] Processing chromosome C18418\r\n", "Processing chromosome C18418\r\n", "INFO [2014-03-08 06:12:50,538] [Preprocessor.java:241] [main] Processing chromosome C18428\r\n", "Processing chromosome C18428\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:50,598] [Preprocessor.java:241] [main] Processing chromosome C1843\r\n", "Processing chromosome C1843\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:50,660] [Preprocessor.java:241] [main] Processing chromosome C18430\r\n", "Processing chromosome C18430\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:50,684] [Preprocessor.java:241] [main] Processing chromosome C18434\r\n", "Processing chromosome C18434\r\n", "INFO [2014-03-08 06:12:50,711] [Preprocessor.java:241] [main] Processing chromosome C18446\r\n", "Processing chromosome C18446\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:50,733] [Preprocessor.java:241] [main] Processing chromosome C18448\r\n", "Processing chromosome C18448\r\n", "INFO [2014-03-08 06:12:50,764] [Preprocessor.java:241] [main] Processing chromosome C18450\r\n", "Processing chromosome C18450\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:50,789] [Preprocessor.java:241] [main] Processing chromosome C18492\r\n", "Processing chromosome C18492\r\n", "INFO [2014-03-08 06:12:50,813] [Preprocessor.java:241] [main] Processing chromosome C18508\r\n", "Processing chromosome C18508\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:50,863] [Preprocessor.java:241] [main] Processing chromosome C18522\r\n", "Processing chromosome C18522\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:50,881] [Preprocessor.java:241] [main] Processing chromosome C18538\r\n", "Processing chromosome C18538\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:50,936] [Preprocessor.java:241] [main] Processing chromosome C18546\r\n", "Processing chromosome C18546\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:50,987] [Preprocessor.java:241] [main] Processing chromosome C18548\r\n", "Processing chromosome C18548\r\n", "INFO [2014-03-08 06:12:51,000] [Preprocessor.java:241] [main] Processing chromosome C18572\r\n", "Processing chromosome C18572\r\n", "INFO [2014-03-08 06:12:51,017] [Preprocessor.java:241] [main] Processing chromosome C18578\r\n", "Processing chromosome C18578\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:51,059] [Preprocessor.java:241] [main] Processing chromosome C18580\r\n", "Processing chromosome C18580\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:51,102] [Preprocessor.java:241] [main] Processing chromosome C18600\r\n", "Processing chromosome C18600\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:51,161] [Preprocessor.java:241] [main] Processing chromosome C1861\r\n", "Processing chromosome C1861\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:51,196] [Preprocessor.java:241] [main] Processing chromosome C18638\r\n", "Processing chromosome C18638\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:51,255] [Preprocessor.java:241] [main] Processing chromosome C18652\r\n", "Processing chromosome C18652\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:51,318] [Preprocessor.java:241] [main] Processing chromosome C18664\r\n", "Processing chromosome C18664\r\n", "INFO [2014-03-08 06:12:51,326] [Preprocessor.java:241] [main] Processing chromosome C18674\r\n", "Processing chromosome C18674\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:51,378] [Preprocessor.java:241] [main] Processing chromosome C18682\r\n", "Processing chromosome C18682\r\n", "INFO [2014-03-08 06:12:51,392] [Preprocessor.java:241] [main] Processing chromosome C18688\r\n", "Processing chromosome C18688\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:51,439] [Preprocessor.java:241] [main] Processing chromosome C18692\r\n", "Processing chromosome C18692\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:51,449] [Preprocessor.java:241] [main] Processing chromosome C18708\r\n", "Processing chromosome C18708\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:51,501] [Preprocessor.java:241] [main] Processing chromosome C18722\r\n", "Processing chromosome C18722\r\n", "INFO [2014-03-08 06:12:51,524] [Preprocessor.java:241] [main] Processing chromosome C18726\r\n", "Processing chromosome C18726\r\n", "INFO [2014-03-08 06:12:51,540] [Preprocessor.java:241] [main] Processing chromosome C18728\r\n", "Processing chromosome C18728\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:51,554] [Preprocessor.java:241] [main] Processing chromosome C18736\r\n", "Processing chromosome C18736\r\n", "INFO [2014-03-08 06:12:51,562] [Preprocessor.java:241] [main] Processing chromosome C18744\r\n", "Processing chromosome C18744\r\n", "INFO [2014-03-08 06:12:51,593] [Preprocessor.java:241] [main] Processing chromosome C18752\r\n", "Processing chromosome C18752\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:51,603] [Preprocessor.java:241] [main] Processing chromosome C18758\r\n", "Processing chromosome C18758\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:51,654] [Preprocessor.java:241] [main] Processing chromosome C18772\r\n", "Processing chromosome C18772\r\n", "INFO [2014-03-08 06:12:51,672] [Preprocessor.java:241] [main] Processing chromosome C18774\r\n", "Processing chromosome C18774\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:51,730] [Preprocessor.java:241] [main] Processing chromosome C18792\r\n", "Processing chromosome C18792\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:51,769] [Preprocessor.java:241] [main] Processing chromosome C18802\r\n", "Processing chromosome C18802\r\n", "INFO [2014-03-08 06:12:51,776] [Preprocessor.java:241] [main] Processing chromosome C18810\r\n", "Processing chromosome C18810\r\n", "INFO [2014-03-08 06:12:51,791] [Preprocessor.java:241] [main] Processing chromosome C18824\r\n", "Processing chromosome C18824\r\n", "INFO [2014-03-08 06:12:51,805] [Preprocessor.java:241] [main] Processing chromosome C18832\r\n", "Processing chromosome C18832\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:51,857] [Preprocessor.java:241] [main] Processing chromosome C18836\r\n", "Processing chromosome C18836\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:51,869] [Preprocessor.java:241] [main] Processing chromosome C18850\r\n", "Processing chromosome C18850\r\n", "INFO [2014-03-08 06:12:51,894] [Preprocessor.java:241] [main] Processing chromosome C18858\r\n", "Processing chromosome C18858\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:51,915] [Preprocessor.java:241] [main] Processing chromosome C18860\r\n", "Processing chromosome C18860\r\n", "INFO [2014-03-08 06:12:51,963] [Preprocessor.java:241] [main] Processing chromosome C18862\r\n", "Processing chromosome C18862\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:51,993] [Preprocessor.java:241] [main] Processing chromosome C1887\r\n", "Processing chromosome C1887\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:52,055] [Preprocessor.java:241] [main] Processing chromosome C18884\r\n", "Processing chromosome C18884\r\n", "INFO [2014-03-08 06:12:52,062] [Preprocessor.java:241] [main] Processing chromosome C18924\r\n", "Processing chromosome C18924\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:52,098] [Preprocessor.java:241] [main] Processing chromosome C18938\r\n", "Processing chromosome C18938\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:52,167] [Preprocessor.java:241] [main] Processing chromosome C18950\r\n", "Processing chromosome C18950\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:52,190] [Preprocessor.java:241] [main] Processing chromosome C18952\r\n", "Processing chromosome C18952\r\n", "INFO [2014-03-08 06:12:52,200] [Preprocessor.java:241] [main] Processing chromosome C18966\r\n", "Processing chromosome C18966\r\n", "INFO [2014-03-08 06:12:52,213] [Preprocessor.java:241] [main] Processing chromosome C18968\r\n", "Processing chromosome C18968\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:52,253] [Preprocessor.java:241] [main] Processing chromosome C18974\r\n", "Processing chromosome C18974\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:52,280] [Preprocessor.java:241] [main] Processing chromosome C18976\r\n", "Processing chromosome C18976\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:52,332] [Preprocessor.java:241] [main] Processing chromosome C18996\r\n", "Processing chromosome C18996\r\n", "INFO [2014-03-08 06:12:52,354] [Preprocessor.java:241] [main] Processing chromosome C19008\r\n", "Processing chromosome C19008\r\n", "INFO [2014-03-08 06:12:52,374] [Preprocessor.java:241] [main] Processing chromosome C19018\r\n", "Processing chromosome C19018\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:52,426] [Preprocessor.java:241] [main] Processing chromosome C19028\r\n", "Processing chromosome C19028\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:52,454] [Preprocessor.java:241] [main] Processing chromosome C19042\r\n", "Processing chromosome C19042\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:52,512] [Preprocessor.java:241] [main] Processing chromosome C19058\r\n", "Processing chromosome C19058\r\n", "INFO [2014-03-08 06:12:52,525] [Preprocessor.java:241] [main] Processing chromosome C19072\r\n", "Processing chromosome C19072\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:52,549] [Preprocessor.java:241] [main] Processing chromosome C19082\r\n", "Processing chromosome C19082\r\n", "INFO [2014-03-08 06:12:52,571] [Preprocessor.java:241] [main] Processing chromosome C19094\r\n", "Processing chromosome C19094\r\n", "INFO [2014-03-08 06:12:52,578] [Preprocessor.java:241] [main] Processing chromosome C19100\r\n", "Processing chromosome C19100\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:52,627] [Preprocessor.java:241] [main] Processing chromosome C19108\r\n", "Processing chromosome C19108\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:52,674] [Preprocessor.java:241] [main] Processing chromosome C19112\r\n", "Processing chromosome C19112\r\n", "INFO [2014-03-08 06:12:52,686] [Preprocessor.java:241] [main] Processing chromosome C19122\r\n", "Processing chromosome C19122\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:52,698] [Preprocessor.java:241] [main] Processing chromosome C19142\r\n", "Processing chromosome C19142\r\n", "INFO [2014-03-08 06:12:52,731] [Preprocessor.java:241] [main] Processing chromosome C19148\r\n", "Processing chromosome C19148\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:52,785] [Preprocessor.java:241] [main] Processing chromosome C19160\r\n", "Processing chromosome C19160\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:52,792] [Preprocessor.java:241] [main] Processing chromosome C19162\r\n", "Processing chromosome C19162\r\n", "INFO [2014-03-08 06:12:52,805] [Preprocessor.java:241] [main] Processing chromosome C19178\r\n", "Processing chromosome C19178\r\n", "INFO [2014-03-08 06:12:52,821] [Preprocessor.java:241] [main] Processing chromosome C19194\r\n", "Processing chromosome C19194\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:52,874] [Preprocessor.java:241] [main] Processing chromosome C19200\r\n", "Processing chromosome C19200\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:52,915] [Preprocessor.java:241] [main] Processing chromosome C19204\r\n", "Processing chromosome C19204\r\n", "INFO [2014-03-08 06:12:52,941] [Preprocessor.java:241] [main] Processing chromosome C19224\r\n", "Processing chromosome C19224\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:52,966] [Preprocessor.java:241] [main] Processing chromosome C19228\r\n", "Processing chromosome C19228\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:53,014] [Preprocessor.java:241] [main] Processing chromosome C19242\r\n", "Processing chromosome C19242\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:53,061] [Preprocessor.java:241] [main] Processing chromosome C19250\r\n", "Processing chromosome C19250\r\n", "INFO [2014-03-08 06:12:53,097] [Preprocessor.java:241] [main] Processing chromosome C19260\r\n", "Processing chromosome C19260\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:53,109] [Preprocessor.java:241] [main] Processing chromosome C19270\r\n", "Processing chromosome C19270\r\n", "INFO [2014-03-08 06:12:53,120] [Preprocessor.java:241] [main] Processing chromosome C19276\r\n", "Processing chromosome C19276\r\n", "INFO [2014-03-08 06:12:53,134] [Preprocessor.java:241] [main] Processing chromosome C19288\r\n", "Processing chromosome C19288\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:53,182] [Preprocessor.java:241] [main] Processing chromosome C19298\r\n", "Processing chromosome C19298\r\n", "INFO [2014-03-08 06:12:53,193] [Preprocessor.java:241] [main] Processing chromosome C19300\r\n", "Processing chromosome C19300\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:53,245] [Preprocessor.java:241] [main] Processing chromosome C19308\r\n", "Processing chromosome C19308\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:53,275] [Preprocessor.java:241] [main] Processing chromosome C19314\r\n", "Processing chromosome C19314\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:53,316] [Preprocessor.java:241] [main] Processing chromosome C19336\r\n", "Processing chromosome C19336\r\n", "INFO [2014-03-08 06:12:53,336] [Preprocessor.java:241] [main] Processing chromosome C19340\r\n", "Processing chromosome C19340\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:53,394] [Preprocessor.java:241] [main] Processing chromosome C19344\r\n", "Processing chromosome C19344\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:53,413] [Preprocessor.java:241] [main] Processing chromosome C19348\r\n", "Processing chromosome C19348\r\n", "INFO [2014-03-08 06:12:53,448] [Preprocessor.java:241] [main] Processing chromosome C19356\r\n", "Processing chromosome C19356\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:53,489] [Preprocessor.java:241] [main] Processing chromosome C19382\r\n", "Processing chromosome C19382\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:53,532] [Preprocessor.java:241] [main] Processing chromosome C19386\r\n", "Processing chromosome C19386\r\n", "INFO [2014-03-08 06:12:53,566] [Preprocessor.java:241] [main] Processing chromosome C19392\r\n", "Processing chromosome C19392\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:53,608] [Preprocessor.java:241] [main] Processing chromosome C19396\r\n", "Processing chromosome C19396\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:53,639] [Preprocessor.java:241] [main] Processing chromosome C19410\r\n", "Processing chromosome C19410\r\n", "INFO [2014-03-08 06:12:53,669] [Preprocessor.java:241] [main] Processing chromosome C19416\r\n", "Processing chromosome C19416\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:53,705] [Preprocessor.java:241] [main] Processing chromosome C19450\r\n", "Processing chromosome C19450\r\n", "INFO [2014-03-08 06:12:53,711] [Preprocessor.java:241] [main] Processing chromosome C19460\r\n", "Processing chromosome C19460\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:53,729] [Preprocessor.java:241] [main] Processing chromosome C19472\r\n", "Processing chromosome C19472\r\n", "INFO [2014-03-08 06:12:53,770] [Preprocessor.java:241] [main] Processing chromosome C19480\r\n", "Processing chromosome C19480\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:53,794] [Preprocessor.java:241] [main] Processing chromosome C19494\r\n", "Processing chromosome C19494\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:53,837] [Preprocessor.java:241] [main] Processing chromosome C19496\r\n", "Processing chromosome C19496\r\n", "INFO [2014-03-08 06:12:53,861] [Preprocessor.java:241] [main] Processing chromosome C19500\r\n", "Processing chromosome C19500\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:53,878] [Preprocessor.java:241] [main] Processing chromosome C19510\r\n", "Processing chromosome C19510\r\n", "INFO [2014-03-08 06:12:53,901] [Preprocessor.java:241] [main] Processing chromosome C19516\r\n", "Processing chromosome C19516\r\n", "INFO [2014-03-08 06:12:53,925] [Preprocessor.java:241] [main] Processing chromosome C19522\r\n", "Processing chromosome C19522\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:53,942] [Preprocessor.java:241] [main] Processing chromosome C19532\r\n", "Processing chromosome C19532\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:53,980] [Preprocessor.java:241] [main] Processing chromosome C19556\r\n", "Processing chromosome C19556\r\n", "INFO [2014-03-08 06:12:54,007] [Preprocessor.java:241] [main] Processing chromosome C19560\r\n", "Processing chromosome C19560\r\n", "INFO [2014-03-08 06:12:54,013] [Preprocessor.java:241] [main] Processing chromosome C19570\r\n", "Processing chromosome C19570\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:54,040] [Preprocessor.java:241] [main] Processing chromosome C19572\r\n", "Processing chromosome C19572\r\n", "INFO [2014-03-08 06:12:54,072] [Preprocessor.java:241] [main] Processing chromosome C19576\r\n", "Processing chromosome C19576\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:54,085] [Preprocessor.java:241] [main] Processing chromosome C19582\r\n", "Processing chromosome C19582\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:54,138] [Preprocessor.java:241] [main] Processing chromosome C19584\r\n", "Processing chromosome C19584\r\n", "INFO [2014-03-08 06:12:54,144] [Preprocessor.java:241] [main] Processing chromosome C19586\r\n", "Processing chromosome C19586\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:54,190] [Preprocessor.java:241] [main] Processing chromosome C19594\r\n", "Processing chromosome C19594\r\n", "INFO [2014-03-08 06:12:54,204] [Preprocessor.java:241] [main] Processing chromosome C19600\r\n", "Processing chromosome C19600\r\n", "INFO [2014-03-08 06:12:54,212] [Preprocessor.java:241] [main] Processing chromosome C19602\r\n", "Processing chromosome C19602\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:54,244] [Preprocessor.java:241] [main] Processing chromosome C19612\r\n", "Processing chromosome C19612\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:54,293] [Preprocessor.java:241] [main] Processing chromosome C19622\r\n", "Processing chromosome C19622\r\n", "INFO [2014-03-08 06:12:54,337] [Preprocessor.java:241] [main] Processing chromosome C19626\r\n", "Processing chromosome C19626\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:54,371] [Preprocessor.java:241] [main] Processing chromosome C19628\r\n", "Processing chromosome C19628\r\n", "INFO [2014-03-08 06:12:54,377] [Preprocessor.java:241] [main] Processing chromosome C19630\r\n", "Processing chromosome C19630\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:54,428] [Preprocessor.java:241] [main] Processing chromosome C19636\r\n", "Processing chromosome C19636\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:54,456] [Preprocessor.java:241] [main] Processing chromosome C19642\r\n", "Processing chromosome C19642\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:54,508] [Preprocessor.java:241] [main] Processing chromosome C19648\r\n", "Processing chromosome C19648\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:54,552] [Preprocessor.java:241] [main] Processing chromosome C19658\r\n", "Processing chromosome C19658\r\n", "INFO [2014-03-08 06:12:54,600] [Preprocessor.java:241] [main] Processing chromosome C19660\r\n", "Processing chromosome C19660\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:54,638] [Preprocessor.java:241] [main] Processing chromosome C19672\r\n", "Processing chromosome C19672\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:54,675] [Preprocessor.java:241] [main] Processing chromosome C19680\r\n", "Processing chromosome C19680\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:54,721] [Preprocessor.java:241] [main] Processing chromosome C19682\r\n", "Processing chromosome C19682\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:54,766] [Preprocessor.java:241] [main] Processing chromosome C19686\r\n", "Processing chromosome C19686\r\n", "INFO [2014-03-08 06:12:54,782] [Preprocessor.java:241] [main] Processing chromosome C19688\r\n", "Processing chromosome C19688\r\n", "INFO [2014-03-08 06:12:54,787] [Preprocessor.java:241] [main] Processing chromosome C19702\r\n", "Processing chromosome C19702\r\n", "INFO [2014-03-08 06:12:54,804] [Preprocessor.java:241] [main] Processing chromosome C19708\r\n", "Processing chromosome C19708\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:54,817] [Preprocessor.java:241] [main] Processing chromosome C19718\r\n", "Processing chromosome C19718\r\n", "INFO [2014-03-08 06:12:54,853] [Preprocessor.java:241] [main] Processing chromosome C19722\r\n", "Processing chromosome C19722\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:54,892] [Preprocessor.java:241] [main] Processing chromosome C19750\r\n", "Processing chromosome C19750\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:54,957] [Preprocessor.java:241] [main] Processing chromosome C19764\r\n", "Processing chromosome C19764\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:54,993] [Preprocessor.java:241] [main] Processing chromosome C19768\r\n", "Processing chromosome C19768\r\n", "INFO [2014-03-08 06:12:55,002] [Preprocessor.java:241] [main] Processing chromosome C19770\r\n", "Processing chromosome C19770\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:55,070] [Preprocessor.java:241] [main] Processing chromosome C19774\r\n", "Processing chromosome C19774\r\n", "INFO [2014-03-08 06:12:55,080] [Preprocessor.java:241] [main] Processing chromosome C19776\r\n", "Processing chromosome C19776\r\n", "INFO [2014-03-08 06:12:55,106] [Preprocessor.java:241] [main] Processing chromosome C19780\r\n", "Processing chromosome C19780\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:55,148] [Preprocessor.java:241] [main] Processing chromosome C19782\r\n", "Processing chromosome C19782\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:55,179] [Preprocessor.java:241] [main] Processing chromosome C19784\r\n", "Processing chromosome C19784\r\n", "INFO [2014-03-08 06:12:55,219] [Preprocessor.java:241] [main] Processing chromosome C19786\r\n", "Processing chromosome C19786\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:55,230] [Preprocessor.java:241] [main] Processing chromosome C19812\r\n", "Processing chromosome C19812\r\n", "INFO [2014-03-08 06:12:55,257] [Preprocessor.java:241] [main] Processing chromosome C19814\r\n", "Processing chromosome C19814\r\n", "INFO [2014-03-08 06:12:55,265] [Preprocessor.java:241] [main] Processing chromosome C19822\r\n", "Processing chromosome C19822\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:55,284] [Preprocessor.java:241] [main] Processing chromosome C19824\r\n", "Processing chromosome C19824\r\n", "INFO [2014-03-08 06:12:55,319] [Preprocessor.java:241] [main] Processing chromosome C19830\r\n", "Processing chromosome C19830\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:55,361] [Preprocessor.java:241] [main] Processing chromosome C19838\r\n", "Processing chromosome C19838\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:55,384] [Preprocessor.java:241] [main] Processing chromosome C19842\r\n", "Processing chromosome C19842\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:55,443] [Preprocessor.java:241] [main] Processing chromosome C19850\r\n", "Processing chromosome C19850\r\n", "INFO [2014-03-08 06:12:55,461] [Preprocessor.java:241] [main] Processing chromosome C19868\r\n", "Processing chromosome C19868\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:55,487] [Preprocessor.java:241] [main] Processing chromosome C19902\r\n", "Processing chromosome C19902\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:55,545] [Preprocessor.java:241] [main] Processing chromosome C19914\r\n", "Processing chromosome C19914\r\n", "INFO [2014-03-08 06:12:55,555] [Preprocessor.java:241] [main] Processing chromosome C19916\r\n", "Processing chromosome C19916\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:55,585] [Preprocessor.java:241] [main] Processing chromosome C19962\r\n", "Processing chromosome C19962\r\n", "INFO [2014-03-08 06:12:55,618] [Preprocessor.java:241] [main] Processing chromosome C19966\r\n", "Processing chromosome C19966\r\n", "INFO [2014-03-08 06:12:55,623] [Preprocessor.java:241] [main] Processing chromosome C19968\r\n", "Processing chromosome C19968\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:55,640] [Preprocessor.java:241] [main] Processing chromosome C19972\r\n", "Processing chromosome C19972\r\n", "INFO [2014-03-08 06:12:55,680] [Preprocessor.java:241] [main] Processing chromosome C19974\r\n", "Processing chromosome C19974\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:55,688] [Preprocessor.java:241] [main] Processing chromosome C19976\r\n", "Processing chromosome C19976\r\n", "INFO [2014-03-08 06:12:55,695] [Preprocessor.java:241] [main] Processing chromosome C19984\r\n", "Processing chromosome C19984\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:55,751] [Preprocessor.java:241] [main] Processing chromosome C19990\r\n", "Processing chromosome C19990\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:55,814] [Preprocessor.java:241] [main] Processing chromosome C19996\r\n", "Processing chromosome C19996\r\n", "INFO [2014-03-08 06:12:55,838] [Preprocessor.java:241] [main] Processing chromosome C20004\r\n", "Processing chromosome C20004\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:55,856] [Preprocessor.java:241] [main] Processing chromosome C20010\r\n", "Processing chromosome C20010\r\n", "INFO [2014-03-08 06:12:55,863] [Preprocessor.java:241] [main] Processing chromosome C20012\r\n", "Processing chromosome C20012\r\n", "INFO [2014-03-08 06:12:55,876] [Preprocessor.java:241] [main] Processing chromosome C20014\r\n", "Processing chromosome C20014\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:55,903] [Preprocessor.java:241] [main] Processing chromosome C20018\r\n", "Processing chromosome C20018\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:55,960] [Preprocessor.java:241] [main] Processing chromosome C20052\r\n", "Processing chromosome C20052\r\n", "INFO [2014-03-08 06:12:55,974] [Preprocessor.java:241] [main] Processing chromosome C20054\r\n", "Processing chromosome C20054\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:56,000] [Preprocessor.java:241] [main] Processing chromosome C20056\r\n", "Processing chromosome C20056\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:56,062] [Preprocessor.java:241] [main] Processing chromosome C20060\r\n", "Processing chromosome C20060\r\n", "INFO [2014-03-08 06:12:56,085] [Preprocessor.java:241] [main] Processing chromosome C20080\r\n", "Processing chromosome C20080\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:56,096] [Preprocessor.java:241] [main] Processing chromosome C20084\r\n", "Processing chromosome C20084\r\n", "INFO [2014-03-08 06:12:56,111] [Preprocessor.java:241] [main] Processing chromosome C20088\r\n", "Processing chromosome C20088\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:56,148] [Preprocessor.java:241] [main] Processing chromosome C20090\r\n", "Processing chromosome C20090\r\n", "INFO [2014-03-08 06:12:56,187] [Preprocessor.java:241] [main] Processing chromosome C20094\r\n", "Processing chromosome C20094\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:56,211] [Preprocessor.java:241] [main] Processing chromosome C20102\r\n", "Processing chromosome C20102\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:56,252] [Preprocessor.java:241] [main] Processing chromosome C20104\r\n", "Processing chromosome C20104\r\n", "INFO [2014-03-08 06:12:56,258] [Preprocessor.java:241] [main] Processing chromosome C20108\r\n", "Processing chromosome C20108\r\n", "INFO [2014-03-08 06:12:56,279] [Preprocessor.java:241] [main] Processing chromosome C2011\r\n", "Processing chromosome C2011\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:56,309] [Preprocessor.java:241] [main] Processing chromosome C20116\r\n", "Processing chromosome C20116\r\n", "INFO [2014-03-08 06:12:56,337] [Preprocessor.java:241] [main] Processing chromosome C2013\r\n", "Processing chromosome C2013\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:56,390] [Preprocessor.java:241] [main] Processing chromosome C20170\r\n", "Processing chromosome C20170\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:56,419] [Preprocessor.java:241] [main] Processing chromosome C20174\r\n", "Processing chromosome C20174\r\n", "INFO [2014-03-08 06:12:56,437] [Preprocessor.java:241] [main] Processing chromosome C20176\r\n", "Processing chromosome C20176\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:56,460] [Preprocessor.java:241] [main] Processing chromosome C20186\r\n", "Processing chromosome C20186\r\n", "INFO [2014-03-08 06:12:56,475] [Preprocessor.java:241] [main] Processing chromosome C20188\r\n", "Processing chromosome C20188\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:56,520] [Preprocessor.java:241] [main] Processing chromosome C20192\r\n", "Processing chromosome C20192\r\n", "INFO [2014-03-08 06:12:56,548] [Preprocessor.java:241] [main] Processing chromosome C20198\r\n", "Processing chromosome C20198\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:56,598] [Preprocessor.java:241] [main] Processing chromosome C20210\r\n", "Processing chromosome C20210\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:56,614] [Preprocessor.java:241] [main] Processing chromosome C20224\r\n", "Processing chromosome C20224\r\n", "INFO [2014-03-08 06:12:56,640] [Preprocessor.java:241] [main] Processing chromosome C20238\r\n", "Processing chromosome C20238\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:56,706] [Preprocessor.java:241] [main] Processing chromosome C20244\r\n", "Processing chromosome C20244\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:56,753] [Preprocessor.java:241] [main] Processing chromosome C20248\r\n", "Processing chromosome C20248\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:56,773] [Preprocessor.java:241] [main] Processing chromosome C20250\r\n", "Processing chromosome C20250\r\n", "INFO [2014-03-08 06:12:56,779] [Preprocessor.java:241] [main] Processing chromosome C20252\r\n", "Processing chromosome C20252\r\n", "INFO [2014-03-08 06:12:56,798] [Preprocessor.java:241] [main] Processing chromosome C20256\r\n", "Processing chromosome C20256\r\n", "INFO [2014-03-08 06:12:56,814] [Preprocessor.java:241] [main] Processing chromosome C20262\r\n", "Processing chromosome C20262\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:56,867] [Preprocessor.java:241] [main] Processing chromosome C20282\r\n", "Processing chromosome C20282\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:56,920] [Preprocessor.java:241] [main] Processing chromosome C20284\r\n", "Processing chromosome C20284\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:56,938] [Preprocessor.java:241] [main] Processing chromosome C20294\r\n", "Processing chromosome C20294\r\n", "INFO [2014-03-08 06:12:56,960] [Preprocessor.java:241] [main] Processing chromosome C20298\r\n", "Processing chromosome C20298\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:56,991] [Preprocessor.java:241] [main] Processing chromosome C20300\r\n", "Processing chromosome C20300\r\n", "INFO [2014-03-08 06:12:57,008] [Preprocessor.java:241] [main] Processing chromosome C20316\r\n", "Processing chromosome C20316\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:57,059] [Preprocessor.java:241] [main] Processing chromosome C20318\r\n", "Processing chromosome C20318\r\n", "INFO [2014-03-08 06:12:57,073] [Preprocessor.java:241] [main] Processing chromosome C20322\r\n", "Processing chromosome C20322\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:57,127] [Preprocessor.java:241] [main] Processing chromosome C20332\r\n", "Processing chromosome C20332\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:57,177] [Preprocessor.java:241] [main] Processing chromosome C20334\r\n", "Processing chromosome C20334\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:57,208] [Preprocessor.java:241] [main] Processing chromosome C20350\r\n", "Processing chromosome C20350\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:57,255] [Preprocessor.java:241] [main] Processing chromosome C20360\r\n", "Processing chromosome C20360\r\n", "INFO [2014-03-08 06:12:57,272] [Preprocessor.java:241] [main] Processing chromosome C20364\r\n", "Processing chromosome C20364\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:57,318] [Preprocessor.java:241] [main] Processing chromosome C20366\r\n", "Processing chromosome C20366\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:57,350] [Preprocessor.java:241] [main] Processing chromosome C20368\r\n", "Processing chromosome C20368\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:57,396] [Preprocessor.java:241] [main] Processing chromosome C20374\r\n", "Processing chromosome C20374\r\n", "INFO [2014-03-08 06:12:57,411] [Preprocessor.java:241] [main] Processing chromosome C20378\r\n", "Processing chromosome C20378\r\n", "INFO [2014-03-08 06:12:57,419] [Preprocessor.java:241] [main] Processing chromosome C20380\r\n", "Processing chromosome C20380\r\n", "INFO [2014-03-08 06:12:57,423] [Preprocessor.java:241] [main] Processing chromosome C20390\r\n", "Processing chromosome C20390\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:57,471] [Preprocessor.java:241] [main] Processing chromosome C20392\r\n", "Processing chromosome C20392\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:57,500] [Preprocessor.java:241] [main] Processing chromosome C20398\r\n", "Processing chromosome C20398\r\n", "INFO [2014-03-08 06:12:57,516] [Preprocessor.java:241] [main] Processing chromosome C20400\r\n", "Processing chromosome C20400\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:57,560] [Preprocessor.java:241] [main] Processing chromosome C20406\r\n", "Processing chromosome C20406\r\n", "INFO [2014-03-08 06:12:57,567] [Preprocessor.java:241] [main] Processing chromosome C2041\r\n", "Processing chromosome C2041\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:57,600] [Preprocessor.java:241] [main] Processing chromosome C20410\r\n", "Processing chromosome C20410\r\n", "INFO [2014-03-08 06:12:57,632] [Preprocessor.java:241] [main] Processing chromosome C20412\r\n", "Processing chromosome C20412\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:57,663] [Preprocessor.java:241] [main] Processing chromosome C20422\r\n", "Processing chromosome C20422\r\n", "INFO [2014-03-08 06:12:57,695] [Preprocessor.java:241] [main] Processing chromosome C20426\r\n", "Processing chromosome C20426\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:57,753] [Preprocessor.java:241] [main] Processing chromosome C20430\r\n", "Processing chromosome C20430\r\n", "INFO [2014-03-08 06:12:57,795] [Preprocessor.java:241] [main] Processing chromosome C20434\r\n", "Processing chromosome C20434\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:57,809] [Preprocessor.java:241] [main] Processing chromosome C20446\r\n", "Processing chromosome C20446\r\n", "INFO [2014-03-08 06:12:57,843] [Preprocessor.java:241] [main] Processing chromosome C20450\r\n", "Processing chromosome C20450\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:57,866] [Preprocessor.java:241] [main] Processing chromosome C20462\r\n", "Processing chromosome C20462\r\n", "INFO [2014-03-08 06:12:57,898] [Preprocessor.java:241] [main] Processing chromosome C20470\r\n", "Processing chromosome C20470\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:57,936] [Preprocessor.java:241] [main] Processing chromosome C20474\r\n", "Processing chromosome C20474\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:57,965] [Preprocessor.java:241] [main] Processing chromosome C20476\r\n", "Processing chromosome C20476\r\n", "INFO [2014-03-08 06:12:57,996] [Preprocessor.java:241] [main] Processing chromosome C20478\r\n", "Processing chromosome C20478\r\n", "INFO [2014-03-08 06:12:58,001] [Preprocessor.java:241] [main] Processing chromosome C20480\r\n", "Processing chromosome C20480\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:58,055] [Preprocessor.java:241] [main] Processing chromosome C20482\r\n", "Processing chromosome C20482\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:58,121] [Preprocessor.java:241] [main] Processing chromosome C20484\r\n", "Processing chromosome C20484\r\n", "INFO [2014-03-08 06:12:58,156] [Preprocessor.java:241] [main] Processing chromosome C20522\r\n", "Processing chromosome C20522\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:58,187] [Preprocessor.java:241] [main] Processing chromosome C20524\r\n", "Processing chromosome C20524\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:58,234] [Preprocessor.java:241] [main] Processing chromosome C20532\r\n", "Processing chromosome C20532\r\n", "INFO [2014-03-08 06:12:58,249] [Preprocessor.java:241] [main] Processing chromosome C20538\r\n", "Processing chromosome C20538\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:58,268] [Preprocessor.java:241] [main] Processing chromosome C20544\r\n", "Processing chromosome C20544\r\n", "INFO [2014-03-08 06:12:58,309] [Preprocessor.java:241] [main] Processing chromosome C20546\r\n", "Processing chromosome C20546\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:58,325] [Preprocessor.java:241] [main] Processing chromosome C20550\r\n", "Processing chromosome C20550\r\n", "INFO [2014-03-08 06:12:58,360] [Preprocessor.java:241] [main] Processing chromosome C20552\r\n", "Processing chromosome C20552\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:58,396] [Preprocessor.java:241] [main] Processing chromosome C20574\r\n", "Processing chromosome C20574\r\n", "INFO [2014-03-08 06:12:58,405] [Preprocessor.java:241] [main] Processing chromosome C20576\r\n", "Processing chromosome C20576\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:58,452] [Preprocessor.java:241] [main] Processing chromosome C20578\r\n", "Processing chromosome C20578\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:58,473] [Preprocessor.java:241] [main] Processing chromosome C20582\r\n", "Processing chromosome C20582\r\n", "INFO [2014-03-08 06:12:58,512] [Preprocessor.java:241] [main] Processing chromosome C20586\r\n", "Processing chromosome C20586\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:58,558] [Preprocessor.java:241] [main] Processing chromosome C20594\r\n", "Processing chromosome C20594\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:58,601] [Preprocessor.java:241] [main] Processing chromosome C20610\r\n", "Processing chromosome C20610\r\n", "INFO [2014-03-08 06:12:58,618] [Preprocessor.java:241] [main] Processing chromosome C20614\r\n", "Processing chromosome C20614\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:58,684] [Preprocessor.java:241] [main] Processing chromosome C20626\r\n", "Processing chromosome C20626\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:58,742] [Preprocessor.java:241] [main] Processing chromosome C20630\r\n", "Processing chromosome C20630\r\n", "INFO [2014-03-08 06:12:58,769] [Preprocessor.java:241] [main] Processing chromosome C20636\r\n", "Processing chromosome C20636\r\n", "INFO [2014-03-08 06:12:58,774] [Preprocessor.java:241] [main] Processing chromosome C20640\r\n", "Processing chromosome C20640\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:58,789] [Preprocessor.java:241] [main] Processing chromosome C20642\r\n", "Processing chromosome C20642\r\n", "INFO [2014-03-08 06:12:58,813] [Preprocessor.java:241] [main] Processing chromosome C20644\r\n", "Processing chromosome C20644\r\n", "INFO [2014-03-08 06:12:58,832] [Preprocessor.java:241] [main] Processing chromosome C20646\r\n", "Processing chromosome C20646\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:58,861] [Preprocessor.java:241] [main] Processing chromosome C20652\r\n", "Processing chromosome C20652\r\n", "INFO [2014-03-08 06:12:58,874] [Preprocessor.java:241] [main] Processing chromosome C20654\r\n", "Processing chromosome C20654\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:58,895] [Preprocessor.java:241] [main] Processing chromosome C20664\r\n", "Processing chromosome C20664\r\n", "INFO [2014-03-08 06:12:58,917] [Preprocessor.java:241] [main] Processing chromosome C2067\r\n", "Processing chromosome C2067\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:58,974] [Preprocessor.java:241] [main] Processing chromosome C20676\r\n", "Processing chromosome C20676\r\n", "INFO [2014-03-08 06:12:58,980] [Preprocessor.java:241] [main] Processing chromosome C20680\r\n", "Processing chromosome C20680\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:59,000] [Preprocessor.java:241] [main] Processing chromosome C20688\r\n", "Processing chromosome C20688\r\n", "INFO [2014-03-08 06:12:59,029] [Preprocessor.java:241] [main] Processing chromosome C20692\r\n", "Processing chromosome C20692\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:59,054] [Preprocessor.java:241] [main] Processing chromosome C20694\r\n", "Processing chromosome C20694\r\n", "INFO [2014-03-08 06:12:59,076] [Preprocessor.java:241] [main] Processing chromosome C20704\r\n", "Processing chromosome C20704\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:59,116] [Preprocessor.java:241] [main] Processing chromosome C2071\r\n", "Processing chromosome C2071\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:59,175] [Preprocessor.java:241] [main] Processing chromosome C20716\r\n", "Processing chromosome C20716\r\n", "INFO [2014-03-08 06:12:59,189] [Preprocessor.java:241] [main] Processing chromosome C20720\r\n", "Processing chromosome C20720\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:59,202] [Preprocessor.java:241] [main] Processing chromosome C20740\r\n", "Processing chromosome C20740\r\n", "INFO [2014-03-08 06:12:59,232] [Preprocessor.java:241] [main] Processing chromosome C20754\r\n", "Processing chromosome C20754\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:59,264] [Preprocessor.java:241] [main] Processing chromosome C20756\r\n", "Processing chromosome C20756\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:59,321] [Preprocessor.java:241] [main] Processing chromosome C20760\r\n", "Processing chromosome C20760\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:59,360] [Preprocessor.java:241] [main] Processing chromosome C20764\r\n", "Processing chromosome C20764\r\n", "INFO [2014-03-08 06:12:59,383] [Preprocessor.java:241] [main] Processing chromosome C20766\r\n", "Processing chromosome C20766\r\n", "INFO [2014-03-08 06:12:59,401] [Preprocessor.java:241] [main] Processing chromosome C20768\r\n", "Processing chromosome C20768\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:59,418] [Preprocessor.java:241] [main] Processing chromosome C20774\r\n", "Processing chromosome C20774\r\n", "INFO [2014-03-08 06:12:59,431] [Preprocessor.java:241] [main] Processing chromosome C20782\r\n", "Processing chromosome C20782\r\n", "INFO [2014-03-08 06:12:59,451] [Preprocessor.java:241] [main] Processing chromosome C20790\r\n", "Processing chromosome C20790\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:59,510] [Preprocessor.java:241] [main] Processing chromosome C20808\r\n", "Processing chromosome C20808\r\n", "INFO [2014-03-08 06:12:59,515] [Preprocessor.java:241] [main] Processing chromosome C20828\r\n", "Processing chromosome C20828\r\n", "INFO [2014-03-08 06:12:59,526] [Preprocessor.java:241] [main] Processing chromosome C20848\r\n", "Processing chromosome C20848\r\n", "INFO [2014-03-08 06:12:59,549] [Preprocessor.java:241] [main] Processing chromosome C20858\r\n", "Processing chromosome C20858\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:59,596] [Preprocessor.java:241] [main] Processing chromosome C2087\r\n", "Processing chromosome C2087\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:59,628] [Preprocessor.java:241] [main] Processing chromosome C20870\r\n", "Processing chromosome C20870\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:59,666] [Preprocessor.java:241] [main] Processing chromosome C20874\r\n", "Processing chromosome C20874\r\n", "INFO [2014-03-08 06:12:59,694] [Preprocessor.java:241] [main] Processing chromosome C20884\r\n", "Processing chromosome C20884\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:59,738] [Preprocessor.java:241] [main] Processing chromosome C20888\r\n", "Processing chromosome C20888\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:59,778] [Preprocessor.java:241] [main] Processing chromosome C2089\r\n", "Processing chromosome C2089\r\n", "INFO [2014-03-08 06:12:59,814] [Preprocessor.java:241] [main] Processing chromosome C20900\r\n", "Processing chromosome C20900\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:59,874] [Preprocessor.java:241] [main] Processing chromosome C20906\r\n", "Processing chromosome C20906\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:12:59,941] [Preprocessor.java:241] [main] Processing chromosome C20916\r\n", "Processing chromosome C20916\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:00,004] [Preprocessor.java:241] [main] Processing chromosome C20920\r\n", "Processing chromosome C20920\r\n", "INFO [2014-03-08 06:13:00,015] [Preprocessor.java:241] [main] Processing chromosome C20928\r\n", "Processing chromosome C20928\r\n", "INFO [2014-03-08 06:13:00,021] [Preprocessor.java:241] [main] Processing chromosome C20942\r\n", "Processing chromosome C20942\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:00,039] [Preprocessor.java:241] [main] Processing chromosome C20946\r\n", "Processing chromosome C20946\r\n", "INFO [2014-03-08 06:13:00,064] [Preprocessor.java:241] [main] Processing chromosome C20948\r\n", "Processing chromosome C20948\r\n", "INFO [2014-03-08 06:13:00,087] [Preprocessor.java:241] [main] Processing chromosome C20986\r\n", "Processing chromosome C20986\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:00,099] [Preprocessor.java:241] [main] Processing chromosome C21000\r\n", "Processing chromosome C21000\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:00,148] [Preprocessor.java:241] [main] Processing chromosome C21008\r\n", "Processing chromosome C21008\r\n", "INFO [2014-03-08 06:13:00,181] [Preprocessor.java:241] [main] Processing chromosome C21012\r\n", "Processing chromosome C21012\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:00,214] [Preprocessor.java:241] [main] Processing chromosome C21018\r\n", "Processing chromosome C21018\r\n", "INFO [2014-03-08 06:13:00,232] [Preprocessor.java:241] [main] Processing chromosome C21032\r\n", "Processing chromosome C21032\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:00,254] [Preprocessor.java:241] [main] Processing chromosome C21036\r\n", "Processing chromosome C21036\r\n", "INFO [2014-03-08 06:13:00,279] [Preprocessor.java:241] [main] Processing chromosome C21038\r\n", "Processing chromosome C21038\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:00,311] [Preprocessor.java:241] [main] Processing chromosome C21046\r\n", "Processing chromosome C21046\r\n", "INFO [2014-03-08 06:13:00,336] [Preprocessor.java:241] [main] Processing chromosome C21050\r\n", "Processing chromosome C21050\r\n", "INFO [2014-03-08 06:13:00,347] [Preprocessor.java:241] [main] Processing chromosome C21060\r\n", "Processing chromosome C21060\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:00,383] [Preprocessor.java:241] [main] Processing chromosome C21062\r\n", "Processing chromosome C21062\r\n", "INFO [2014-03-08 06:13:00,395] [Preprocessor.java:241] [main] Processing chromosome C21064\r\n", "Processing chromosome C21064\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:00,424] [Preprocessor.java:241] [main] Processing chromosome C21072\r\n", "Processing chromosome C21072\r\n", "INFO [2014-03-08 06:13:00,445] [Preprocessor.java:241] [main] Processing chromosome C21094\r\n", "Processing chromosome C21094\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:00,504] [Preprocessor.java:241] [main] Processing chromosome C21096\r\n", "Processing chromosome C21096\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:00,517] [Preprocessor.java:241] [main] Processing chromosome C21102\r\n", "Processing chromosome C21102\r\n", "INFO [2014-03-08 06:13:00,541] [Preprocessor.java:241] [main] Processing chromosome C21104\r\n", "Processing chromosome C21104\r\n", "INFO [2014-03-08 06:13:00,545] [Preprocessor.java:241] [main] Processing chromosome C21108\r\n", "Processing chromosome C21108\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:00,576] [Preprocessor.java:241] [main] Processing chromosome C21120\r\n", "Processing chromosome C21120\r\n", "INFO [2014-03-08 06:13:00,592] [Preprocessor.java:241] [main] Processing chromosome C21122\r\n", "Processing chromosome C21122\r\n", "INFO [2014-03-08 06:13:00,604] [Preprocessor.java:241] [main] Processing chromosome C21128\r\n", "Processing chromosome C21128\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:00,638] [Preprocessor.java:241] [main] Processing chromosome C21130\r\n", "Processing chromosome C21130\r\n", "INFO [2014-03-08 06:13:00,657] [Preprocessor.java:241] [main] Processing chromosome C21134\r\n", "Processing chromosome C21134\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:00,663] [Preprocessor.java:241] [main] Processing chromosome C21144\r\n", "Processing chromosome C21144\r\n", "INFO [2014-03-08 06:13:00,688] [Preprocessor.java:241] [main] Processing chromosome C21154\r\n", "Processing chromosome C21154\r\n", "INFO [2014-03-08 06:13:00,702] [Preprocessor.java:241] [main] Processing chromosome C21156\r\n", "Processing chromosome C21156\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:00,741] [Preprocessor.java:241] [main] Processing chromosome C21160\r\n", "Processing chromosome C21160\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:00,774] [Preprocessor.java:241] [main] Processing chromosome C21170\r\n", "Processing chromosome C21170\r\n", "INFO [2014-03-08 06:13:00,813] [Preprocessor.java:241] [main] Processing chromosome C21176\r\n", "Processing chromosome C21176\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:00,872] [Preprocessor.java:241] [main] Processing chromosome C21178\r\n", "Processing chromosome C21178\r\n", "INFO [2014-03-08 06:13:00,905] [Preprocessor.java:241] [main] Processing chromosome C21186\r\n", "Processing chromosome C21186\r\n", "INFO [2014-03-08 06:13:00,912] [Preprocessor.java:241] [main] Processing chromosome C21188\r\n", "Processing chromosome C21188\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:00,959] [Preprocessor.java:241] [main] Processing chromosome C21194\r\n", "Processing chromosome C21194\r\n", "INFO [2014-03-08 06:13:00,964] [Preprocessor.java:241] [main] Processing chromosome C21218\r\n", "Processing chromosome C21218\r\n", "INFO [2014-03-08 06:13:00,973] [Preprocessor.java:241] [main] Processing chromosome C21226\r\n", "Processing chromosome C21226\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:01,003] [Preprocessor.java:241] [main] Processing chromosome C21236\r\n", "Processing chromosome C21236\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:01,036] [Preprocessor.java:241] [main] Processing chromosome C21238\r\n", "Processing chromosome C21238\r\n", "INFO [2014-03-08 06:13:01,051] [Preprocessor.java:241] [main] Processing chromosome C21256\r\n", "Processing chromosome C21256\r\n", "INFO [2014-03-08 06:13:01,074] [Preprocessor.java:241] [main] Processing chromosome C21260\r\n", "Processing chromosome C21260\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:01,114] [Preprocessor.java:241] [main] Processing chromosome C21278\r\n", "Processing chromosome C21278\r\n", "INFO [2014-03-08 06:13:01,130] [Preprocessor.java:241] [main] Processing chromosome C21282\r\n", "Processing chromosome C21282\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:01,148] [Preprocessor.java:241] [main] Processing chromosome C21286\r\n", "Processing chromosome C21286\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:01,209] [Preprocessor.java:241] [main] Processing chromosome C21292\r\n", "Processing chromosome C21292\r\n", "INFO [2014-03-08 06:13:01,211] [Preprocessor.java:241] [main] Processing chromosome C21298\r\n", "Processing chromosome C21298\r\n", "INFO [2014-03-08 06:13:01,232] [Preprocessor.java:241] [main] Processing chromosome C21304\r\n", "Processing chromosome C21304\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:01,246] [Preprocessor.java:241] [main] Processing chromosome C21306\r\n", "Processing chromosome C21306\r\n", "INFO [2014-03-08 06:13:01,257] [Preprocessor.java:241] [main] Processing chromosome C21308\r\n", "Processing chromosome C21308\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:01,285] [Preprocessor.java:241] [main] Processing chromosome C21310\r\n", "Processing chromosome C21310\r\n", "INFO [2014-03-08 06:13:01,303] [Preprocessor.java:241] [main] Processing chromosome C21312\r\n", "Processing chromosome C21312\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:01,356] [Preprocessor.java:241] [main] Processing chromosome C21314\r\n", "Processing chromosome C21314\r\n", "INFO [2014-03-08 06:13:01,363] [Preprocessor.java:241] [main] Processing chromosome C21324\r\n", "Processing chromosome C21324\r\n", "INFO [2014-03-08 06:13:01,376] [Preprocessor.java:241] [main] Processing chromosome C21330\r\n", "Processing chromosome C21330\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:01,391] [Preprocessor.java:241] [main] Processing chromosome C21336\r\n", "Processing chromosome C21336\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:01,442] [Preprocessor.java:241] [main] Processing chromosome C21340\r\n", "Processing chromosome C21340\r\n", "INFO [2014-03-08 06:13:01,448] [Preprocessor.java:241] [main] Processing chromosome C21346\r\n", "Processing chromosome C21346\r\n", "INFO [2014-03-08 06:13:01,480] [Preprocessor.java:241] [main] Processing chromosome C21354\r\n", "Processing chromosome C21354\r\n", "INFO [2014-03-08 06:13:01,490] [Preprocessor.java:241] [main] Processing chromosome C21356\r\n", "Processing chromosome C21356\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:01,504] [Preprocessor.java:241] [main] Processing chromosome C21372\r\n", "Processing chromosome C21372\r\n", "INFO [2014-03-08 06:13:01,520] [Preprocessor.java:241] [main] Processing chromosome C21374\r\n", "Processing chromosome C21374\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:01,570] [Preprocessor.java:241] [main] Processing chromosome C21378\r\n", "Processing chromosome C21378\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:01,605] [Preprocessor.java:241] [main] Processing chromosome C21380\r\n", "Processing chromosome C21380\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:01,651] [Preprocessor.java:241] [main] Processing chromosome C21386\r\n", "Processing chromosome C21386\r\n", "INFO [2014-03-08 06:13:01,673] [Preprocessor.java:241] [main] Processing chromosome C21404\r\n", "Processing chromosome C21404\r\n", "INFO [2014-03-08 06:13:01,679] [Preprocessor.java:241] [main] Processing chromosome C2141\r\n", "Processing chromosome C2141\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:01,709] [Preprocessor.java:241] [main] Processing chromosome C21418\r\n", "Processing chromosome C21418\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:01,750] [Preprocessor.java:241] [main] Processing chromosome C21438\r\n", "Processing chromosome C21438\r\n", "INFO [2014-03-08 06:13:01,765] [Preprocessor.java:241] [main] Processing chromosome C2145\r\n", "Processing chromosome C2145\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:01,820] [Preprocessor.java:241] [main] Processing chromosome C21454\r\n", "Processing chromosome C21454\r\n", "INFO [2014-03-08 06:13:01,848] [Preprocessor.java:241] [main] Processing chromosome C21460\r\n", "Processing chromosome C21460\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:01,876] [Preprocessor.java:241] [main] Processing chromosome C21474\r\n", "Processing chromosome C21474\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:01,936] [Preprocessor.java:241] [main] Processing chromosome C21484\r\n", "Processing chromosome C21484\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:01,976] [Preprocessor.java:241] [main] Processing chromosome C21494\r\n", "Processing chromosome C21494\r\n", "INFO [2014-03-08 06:13:01,984] [Preprocessor.java:241] [main] Processing chromosome C21500\r\n", "Processing chromosome C21500\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:02,020] [Preprocessor.java:241] [main] Processing chromosome C21502\r\n", "Processing chromosome C21502\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:02,071] [Preprocessor.java:241] [main] Processing chromosome C21504\r\n", "Processing chromosome C21504\r\n", "INFO [2014-03-08 06:13:02,081] [Preprocessor.java:241] [main] Processing chromosome C21508\r\n", "Processing chromosome C21508\r\n", "INFO [2014-03-08 06:13:02,106] [Preprocessor.java:241] [main] Processing chromosome C21516\r\n", "Processing chromosome C21516\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:02,144] [Preprocessor.java:241] [main] Processing chromosome C21518\r\n", "Processing chromosome C21518\r\n", "INFO [2014-03-08 06:13:02,151] [Preprocessor.java:241] [main] Processing chromosome C21544\r\n", "Processing chromosome C21544\r\n", "INFO [2014-03-08 06:13:02,159] [Preprocessor.java:241] [main] Processing chromosome C21548\r\n", "Processing chromosome C21548\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:02,200] [Preprocessor.java:241] [main] Processing chromosome C21550\r\n", "Processing chromosome C21550\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:02,222] [Preprocessor.java:241] [main] Processing chromosome C21554\r\n", "Processing chromosome C21554\r\n", "INFO [2014-03-08 06:13:02,261] [Preprocessor.java:241] [main] Processing chromosome C21558\r\n", "Processing chromosome C21558\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:02,270] [Preprocessor.java:241] [main] Processing chromosome C21560\r\n", "Processing chromosome C21560\r\n", "INFO [2014-03-08 06:13:02,276] [Preprocessor.java:241] [main] Processing chromosome C21564\r\n", "Processing chromosome C21564\r\n", "INFO [2014-03-08 06:13:02,280] [Preprocessor.java:241] [main] Processing chromosome C21566\r\n", "Processing chromosome C21566\r\n", "INFO [2014-03-08 06:13:02,300] [Preprocessor.java:241] [main] Processing chromosome C21572\r\n", "Processing chromosome C21572\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:02,353] [Preprocessor.java:241] [main] Processing chromosome C21578\r\n", "Processing chromosome C21578\r\n", "INFO [2014-03-08 06:13:02,362] [Preprocessor.java:241] [main] Processing chromosome C21582\r\n", "Processing chromosome C21582\r\n", "INFO [2014-03-08 06:13:02,367] [Preprocessor.java:241] [main] Processing chromosome C21586\r\n", "Processing chromosome C21586\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:02,387] [Preprocessor.java:241] [main] Processing chromosome C21588\r\n", "Processing chromosome C21588\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:02,436] [Preprocessor.java:241] [main] Processing chromosome C21590\r\n", "Processing chromosome C21590\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:02,489] [Preprocessor.java:241] [main] Processing chromosome C21596\r\n", "Processing chromosome C21596\r\n", "INFO [2014-03-08 06:13:02,510] [Preprocessor.java:241] [main] Processing chromosome C21610\r\n", "Processing chromosome C21610\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:02,531] [Preprocessor.java:241] [main] Processing chromosome C21614\r\n", "Processing chromosome C21614\r\n", "INFO [2014-03-08 06:13:02,556] [Preprocessor.java:241] [main] Processing chromosome C21616\r\n", "Processing chromosome C21616\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:02,577] [Preprocessor.java:241] [main] Processing chromosome C21622\r\n", "Processing chromosome C21622\r\n", "INFO [2014-03-08 06:13:02,608] [Preprocessor.java:241] [main] Processing chromosome C21624\r\n", "Processing chromosome C21624\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:02,630] [Preprocessor.java:241] [main] Processing chromosome C21634\r\n", "Processing chromosome C21634\r\n", "INFO [2014-03-08 06:13:02,641] [Preprocessor.java:241] [main] Processing chromosome C21636\r\n", "Processing chromosome C21636\r\n", "INFO [2014-03-08 06:13:02,662] [Preprocessor.java:241] [main] Processing chromosome C21638\r\n", "Processing chromosome C21638\r\n", "INFO [2014-03-08 06:13:02,672] [Preprocessor.java:241] [main] Processing chromosome C21650\r\n", "Processing chromosome C21650\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:02,686] [Preprocessor.java:241] [main] Processing chromosome C21652\r\n", "Processing chromosome C21652\r\n", "INFO [2014-03-08 06:13:02,715] [Preprocessor.java:241] [main] Processing chromosome C21654\r\n", "Processing chromosome C21654\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:02,766] [Preprocessor.java:241] [main] Processing chromosome C21670\r\n", "Processing chromosome C21670\r\n", "INFO [2014-03-08 06:13:02,770] [Preprocessor.java:241] [main] Processing chromosome C21684\r\n", "Processing chromosome C21684\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:02,789] [Preprocessor.java:241] [main] Processing chromosome C21694\r\n", "Processing chromosome C21694\r\n", "INFO [2014-03-08 06:13:02,820] [Preprocessor.java:241] [main] Processing chromosome C21696\r\n", "Processing chromosome C21696\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:02,855] [Preprocessor.java:241] [main] Processing chromosome C21702\r\n", "Processing chromosome C21702\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:02,900] [Preprocessor.java:241] [main] Processing chromosome C21710\r\n", "Processing chromosome C21710\r\n", "INFO [2014-03-08 06:13:02,922] [Preprocessor.java:241] [main] Processing chromosome C21716\r\n", "Processing chromosome C21716\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:02,948] [Preprocessor.java:241] [main] Processing chromosome C21720\r\n", "Processing chromosome C21720\r\n", "INFO [2014-03-08 06:13:02,977] [Preprocessor.java:241] [main] Processing chromosome C21722\r\n", "Processing chromosome C21722\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:03,030] [Preprocessor.java:241] [main] Processing chromosome C21724\r\n", "Processing chromosome C21724\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:03,050] [Preprocessor.java:241] [main] Processing chromosome C21728\r\n", "Processing chromosome C21728\r\n", "INFO [2014-03-08 06:13:03,065] [Preprocessor.java:241] [main] Processing chromosome C21730\r\n", "Processing chromosome C21730\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:03,102] [Preprocessor.java:241] [main] Processing chromosome C21750\r\n", "Processing chromosome C21750\r\n", "INFO [2014-03-08 06:13:03,112] [Preprocessor.java:241] [main] Processing chromosome C21764\r\n", "Processing chromosome C21764\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:03,156] [Preprocessor.java:241] [main] Processing chromosome C21766\r\n", "Processing chromosome C21766\r\n", "INFO [2014-03-08 06:13:03,167] [Preprocessor.java:241] [main] Processing chromosome C21780\r\n", "Processing chromosome C21780\r\n", "INFO [2014-03-08 06:13:03,179] [Preprocessor.java:241] [main] Processing chromosome C21782\r\n", "Processing chromosome C21782\r\n", "INFO [2014-03-08 06:13:03,184] [Preprocessor.java:241] [main] Processing chromosome C21784\r\n", "Processing chromosome C21784\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:03,199] [Preprocessor.java:241] [main] Processing chromosome C21790\r\n", "Processing chromosome C21790\r\n", "INFO [2014-03-08 06:13:03,213] [Preprocessor.java:241] [main] Processing chromosome C21792\r\n", "Processing chromosome C21792\r\n", "INFO [2014-03-08 06:13:03,237] [Preprocessor.java:241] [main] Processing chromosome C21796\r\n", "Processing chromosome C21796\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:03,268] [Preprocessor.java:241] [main] Processing chromosome C21802\r\n", "Processing chromosome C21802\r\n", "INFO [2014-03-08 06:13:03,287] [Preprocessor.java:241] [main] Processing chromosome C21804\r\n", "Processing chromosome C21804\r\n", "INFO [2014-03-08 06:13:03,293] [Preprocessor.java:241] [main] Processing chromosome C21812\r\n", "Processing chromosome C21812\r\n", "INFO [2014-03-08 06:13:03,297] [Preprocessor.java:241] [main] Processing chromosome C21820\r\n", "Processing chromosome C21820\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:03,313] [Preprocessor.java:241] [main] Processing chromosome C21834\r\n", "Processing chromosome C21834\r\n", "INFO [2014-03-08 06:13:03,324] [Preprocessor.java:241] [main] Processing chromosome C21840\r\n", "Processing chromosome C21840\r\n", "INFO [2014-03-08 06:13:03,328] [Preprocessor.java:241] [main] Processing chromosome C21848\r\n", "Processing chromosome C21848\r\n", "INFO [2014-03-08 06:13:03,333] [Preprocessor.java:241] [main] Processing chromosome C21852\r\n", "Processing chromosome C21852\r\n", "INFO [2014-03-08 06:13:03,344] [Preprocessor.java:241] [main] Processing chromosome C21854\r\n", "Processing chromosome C21854\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:03,372] [Preprocessor.java:241] [main] Processing chromosome C21858\r\n", "Processing chromosome C21858\r\n", "INFO [2014-03-08 06:13:03,380] [Preprocessor.java:241] [main] Processing chromosome C21862\r\n", "Processing chromosome C21862\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:03,485] [Preprocessor.java:241] [main] Processing chromosome C21868\r\n", "Processing chromosome C21868\r\n", "INFO [2014-03-08 06:13:03,493] [Preprocessor.java:241] [main] Processing chromosome C21870\r\n", "Processing chromosome C21870\r\n", "INFO [2014-03-08 06:13:03,501] [Preprocessor.java:241] [main] Processing chromosome C21884\r\n", "Processing chromosome C21884\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:03,517] [Preprocessor.java:241] [main] Processing chromosome C21892\r\n", "Processing chromosome C21892\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:03,559] [Preprocessor.java:241] [main] Processing chromosome C21896\r\n", "Processing chromosome C21896\r\n", "INFO [2014-03-08 06:13:03,566] [Preprocessor.java:241] [main] Processing chromosome C21924\r\n", "Processing chromosome C21924\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:03,625] [Preprocessor.java:241] [main] Processing chromosome C21942\r\n", "Processing chromosome C21942\r\n", "INFO [2014-03-08 06:13:03,650] [Preprocessor.java:241] [main] Processing chromosome C21944\r\n", "Processing chromosome C21944\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:03,704] [Preprocessor.java:241] [main] Processing chromosome C21956\r\n", "Processing chromosome C21956\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:03,716] [Preprocessor.java:241] [main] Processing chromosome C21988\r\n", "Processing chromosome C21988\r\n", "INFO [2014-03-08 06:13:03,720] [Preprocessor.java:241] [main] Processing chromosome C21994\r\n", "Processing chromosome C21994\r\n", "INFO [2014-03-08 06:13:03,750] [Preprocessor.java:241] [main] Processing chromosome C22000\r\n", "Processing chromosome C22000\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:03,770] [Preprocessor.java:241] [main] Processing chromosome C2201\r\n", "Processing chromosome C2201\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:03,835] [Preprocessor.java:241] [main] Processing chromosome C22010\r\n", "Processing chromosome C22010\r\n", "INFO [2014-03-08 06:13:03,847] [Preprocessor.java:241] [main] Processing chromosome C22012\r\n", "Processing chromosome C22012\r\n", "INFO [2014-03-08 06:13:03,866] [Preprocessor.java:241] [main] Processing chromosome C22018\r\n", "Processing chromosome C22018\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:03,874] [Preprocessor.java:241] [main] Processing chromosome C22020\r\n", "Processing chromosome C22020\r\n", "INFO [2014-03-08 06:13:03,900] [Preprocessor.java:241] [main] Processing chromosome C22028\r\n", "Processing chromosome C22028\r\n", "INFO [2014-03-08 06:13:03,905] [Preprocessor.java:241] [main] Processing chromosome C22032\r\n", "Processing chromosome C22032\r\n", "INFO [2014-03-08 06:13:03,913] [Preprocessor.java:241] [main] Processing chromosome C22036\r\n", "Processing chromosome C22036\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:03,940] [Preprocessor.java:241] [main] Processing chromosome C22046\r\n", "Processing chromosome C22046\r\n", "INFO [2014-03-08 06:13:03,961] [Preprocessor.java:241] [main] Processing chromosome C22048\r\n", "Processing chromosome C22048\r\n", "INFO [2014-03-08 06:13:03,968] [Preprocessor.java:241] [main] Processing chromosome C22056\r\n", "Processing chromosome C22056\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:03,974] [Preprocessor.java:241] [main] Processing chromosome C22058\r\n", "Processing chromosome C22058\r\n", "INFO [2014-03-08 06:13:03,995] [Preprocessor.java:241] [main] Processing chromosome C22060\r\n", "Processing chromosome C22060\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:04,030] [Preprocessor.java:241] [main] Processing chromosome C22074\r\n", "Processing chromosome C22074\r\n", "INFO [2014-03-08 06:13:04,051] [Preprocessor.java:241] [main] Processing chromosome C22084\r\n", "Processing chromosome C22084\r\n", "INFO [2014-03-08 06:13:04,064] [Preprocessor.java:241] [main] Processing chromosome C22092\r\n", "Processing chromosome C22092\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:04,087] [Preprocessor.java:241] [main] Processing chromosome C22094\r\n", "Processing chromosome C22094\r\n", "INFO [2014-03-08 06:13:04,094] [Preprocessor.java:241] [main] Processing chromosome C22096\r\n", "Processing chromosome C22096\r\n", "INFO [2014-03-08 06:13:04,115] [Preprocessor.java:241] [main] Processing chromosome C22100\r\n", "Processing chromosome C22100\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:04,134] [Preprocessor.java:241] [main] Processing chromosome C22106\r\n", "Processing chromosome C22106\r\n", "INFO [2014-03-08 06:13:04,147] [Preprocessor.java:241] [main] Processing chromosome C22110\r\n", "Processing chromosome C22110\r\n", "INFO [2014-03-08 06:13:04,174] [Preprocessor.java:241] [main] Processing chromosome C22112\r\n", "Processing chromosome C22112\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:04,227] [Preprocessor.java:241] [main] Processing chromosome C22114\r\n", "Processing chromosome C22114\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:04,258] [Preprocessor.java:241] [main] Processing chromosome C22118\r\n", "Processing chromosome C22118\r\n", "INFO [2014-03-08 06:13:04,277] [Preprocessor.java:241] [main] Processing chromosome C22120\r\n", "Processing chromosome C22120\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:04,295] [Preprocessor.java:241] [main] Processing chromosome C22124\r\n", "Processing chromosome C22124\r\n", "INFO [2014-03-08 06:13:04,299] [Preprocessor.java:241] [main] Processing chromosome C22130\r\n", "Processing chromosome C22130\r\n", "INFO [2014-03-08 06:13:04,313] [Preprocessor.java:241] [main] Processing chromosome C22136\r\n", "Processing chromosome C22136\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:04,342] [Preprocessor.java:241] [main] Processing chromosome C22138\r\n", "Processing chromosome C22138\r\n", "INFO [2014-03-08 06:13:04,361] [Preprocessor.java:241] [main] Processing chromosome C22140\r\n", "Processing chromosome C22140\r\n", "INFO [2014-03-08 06:13:04,382] [Preprocessor.java:241] [main] Processing chromosome C22142\r\n", "Processing chromosome C22142\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:04,423] [Preprocessor.java:241] [main] Processing chromosome C22146\r\n", "Processing chromosome C22146\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:04,441] [Preprocessor.java:241] [main] Processing chromosome C22148\r\n", "Processing chromosome C22148\r\n", "INFO [2014-03-08 06:13:04,455] [Preprocessor.java:241] [main] Processing chromosome C22164\r\n", "Processing chromosome C22164\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:04,494] [Preprocessor.java:241] [main] Processing chromosome C22168\r\n", "Processing chromosome C22168\r\n", "INFO [2014-03-08 06:13:04,514] [Preprocessor.java:241] [main] Processing chromosome C22174\r\n", "Processing chromosome C22174\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:04,546] [Preprocessor.java:241] [main] Processing chromosome C22192\r\n", "Processing chromosome C22192\r\n", "INFO [2014-03-08 06:13:04,591] [Preprocessor.java:241] [main] Processing chromosome C22194\r\n", "Processing chromosome C22194\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:04,611] [Preprocessor.java:241] [main] Processing chromosome C22198\r\n", "Processing chromosome C22198\r\n", "INFO [2014-03-08 06:13:04,622] [Preprocessor.java:241] [main] Processing chromosome C22202\r\n", "Processing chromosome C22202\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:04,644] [Preprocessor.java:241] [main] Processing chromosome C22208\r\n", "Processing chromosome C22208\r\n", "INFO [2014-03-08 06:13:04,663] [Preprocessor.java:241] [main] Processing chromosome C22216\r\n", "Processing chromosome C22216\r\n", "INFO [2014-03-08 06:13:04,673] [Preprocessor.java:241] [main] Processing chromosome C22220\r\n", "Processing chromosome C22220\r\n", "INFO [2014-03-08 06:13:04,693] [Preprocessor.java:241] [main] Processing chromosome C22232\r\n", "Processing chromosome C22232\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:04,719] [Preprocessor.java:241] [main] Processing chromosome C22242\r\n", "Processing chromosome C22242\r\n", "INFO [2014-03-08 06:13:04,741] [Preprocessor.java:241] [main] Processing chromosome C22248\r\n", "Processing chromosome C22248\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:04,791] [Preprocessor.java:241] [main] Processing chromosome C22264\r\n", "Processing chromosome C22264\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:04,820] [Preprocessor.java:241] [main] Processing chromosome C22268\r\n", "Processing chromosome C22268\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:04,849] [Preprocessor.java:241] [main] Processing chromosome C22274\r\n", "Processing chromosome C22274\r\n", "INFO [2014-03-08 06:13:04,896] [Preprocessor.java:241] [main] Processing chromosome C22276\r\n", "Processing chromosome C22276\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:04,912] [Preprocessor.java:241] [main] Processing chromosome C22280\r\n", "Processing chromosome C22280\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:04,952] [Preprocessor.java:241] [main] Processing chromosome C22284\r\n", "Processing chromosome C22284\r\n", "INFO [2014-03-08 06:13:04,963] [Preprocessor.java:241] [main] Processing chromosome C22290\r\n", "Processing chromosome C22290\r\n", "INFO [2014-03-08 06:13:04,997] [Preprocessor.java:241] [main] Processing chromosome C22294\r\n", "Processing chromosome C22294\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:05,040] [Preprocessor.java:241] [main] Processing chromosome C22298\r\n", "Processing chromosome C22298\r\n", "INFO [2014-03-08 06:13:05,043] [Preprocessor.java:241] [main] Processing chromosome C22302\r\n", "Processing chromosome C22302\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:05,061] [Preprocessor.java:241] [main] Processing chromosome C22304\r\n", "Processing chromosome C22304\r\n", "INFO [2014-03-08 06:13:05,080] [Preprocessor.java:241] [main] Processing chromosome C22310\r\n", "Processing chromosome C22310\r\n", "INFO [2014-03-08 06:13:05,089] [Preprocessor.java:241] [main] Processing chromosome C22322\r\n", "Processing chromosome C22322\r\n", "INFO [2014-03-08 06:13:05,097] [Preprocessor.java:241] [main] Processing chromosome C22324\r\n", "Processing chromosome C22324\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:05,142] [Preprocessor.java:241] [main] Processing chromosome C22326\r\n", "Processing chromosome C22326\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:05,160] [Preprocessor.java:241] [main] Processing chromosome C22330\r\n", "Processing chromosome C22330\r\n", "INFO [2014-03-08 06:13:05,163] [Preprocessor.java:241] [main] Processing chromosome C22340\r\n", "Processing chromosome C22340\r\n", "INFO [2014-03-08 06:13:05,204] [Preprocessor.java:241] [main] Processing chromosome C22344\r\n", "Processing chromosome C22344\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:05,239] [Preprocessor.java:241] [main] Processing chromosome C22346\r\n", "Processing chromosome C22346\r\n", "INFO [2014-03-08 06:13:05,259] [Preprocessor.java:241] [main] Processing chromosome C22360\r\n", "Processing chromosome C22360\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:05,270] [Preprocessor.java:241] [main] Processing chromosome C22368\r\n", "Processing chromosome C22368\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:05,328] [Preprocessor.java:241] [main] Processing chromosome C22382\r\n", "Processing chromosome C22382\r\n", "INFO [2014-03-08 06:13:05,343] [Preprocessor.java:241] [main] Processing chromosome C22384\r\n", "Processing chromosome C22384\r\n", "INFO [2014-03-08 06:13:05,353] [Preprocessor.java:241] [main] Processing chromosome C22386\r\n", "Processing chromosome C22386\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:05,367] [Preprocessor.java:241] [main] Processing chromosome C22388\r\n", "Processing chromosome C22388\r\n", "INFO [2014-03-08 06:13:05,396] [Preprocessor.java:241] [main] Processing chromosome C22390\r\n", "Processing chromosome C22390\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:05,448] [Preprocessor.java:241] [main] Processing chromosome C22400\r\n", "Processing chromosome C22400\r\n", "INFO [2014-03-08 06:13:05,453] [Preprocessor.java:241] [main] Processing chromosome C22406\r\n", "Processing chromosome C22406\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:05,501] [Preprocessor.java:241] [main] Processing chromosome C22414\r\n", "Processing chromosome C22414\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:05,524] [Preprocessor.java:241] [main] Processing chromosome C22422\r\n", "Processing chromosome C22422\r\n", "INFO [2014-03-08 06:13:05,569] [Preprocessor.java:241] [main] Processing chromosome C22424\r\n", "Processing chromosome C22424\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:05,587] [Preprocessor.java:241] [main] Processing chromosome C22440\r\n", "Processing chromosome C22440\r\n", "INFO [2014-03-08 06:13:05,606] [Preprocessor.java:241] [main] Processing chromosome C22444\r\n", "Processing chromosome C22444\r\n", "INFO [2014-03-08 06:13:05,622] [Preprocessor.java:241] [main] Processing chromosome C2245\r\n", "Processing chromosome C2245\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:05,654] [Preprocessor.java:241] [main] Processing chromosome C22452\r\n", "Processing chromosome C22452\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:05,694] [Preprocessor.java:241] [main] Processing chromosome C22456\r\n", "Processing chromosome C22456\r\n", "INFO [2014-03-08 06:13:05,728] [Preprocessor.java:241] [main] Processing chromosome C22458\r\n", "Processing chromosome C22458\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:05,793] [Preprocessor.java:241] [main] Processing chromosome C22468\r\n", "Processing chromosome C22468\r\n", "INFO [2014-03-08 06:13:05,817] [Preprocessor.java:241] [main] Processing chromosome C22470\r\n", "Processing chromosome C22470\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:05,846] [Preprocessor.java:241] [main] Processing chromosome C22484\r\n", "Processing chromosome C22484\r\n", "INFO [2014-03-08 06:13:05,849] [Preprocessor.java:241] [main] Processing chromosome C22486\r\n", "Processing chromosome C22486\r\n", "INFO [2014-03-08 06:13:05,856] [Preprocessor.java:241] [main] Processing chromosome C22492\r\n", "Processing chromosome C22492\r\n", "INFO [2014-03-08 06:13:05,878] [Preprocessor.java:241] [main] Processing chromosome C22494\r\n", "Processing chromosome C22494\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:05,922] [Preprocessor.java:241] [main] Processing chromosome C22500\r\n", "Processing chromosome C22500\r\n", "INFO [2014-03-08 06:13:05,932] [Preprocessor.java:241] [main] Processing chromosome C2251\r\n", "Processing chromosome C2251\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:06,004] [Preprocessor.java:241] [main] Processing chromosome C22514\r\n", "Processing chromosome C22514\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:06,052] [Preprocessor.java:241] [main] Processing chromosome C22516\r\n", "Processing chromosome C22516\r\n", "INFO [2014-03-08 06:13:06,084] [Preprocessor.java:241] [main] Processing chromosome C22518\r\n", "Processing chromosome C22518\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:06,118] [Preprocessor.java:241] [main] Processing chromosome C22520\r\n", "Processing chromosome C22520\r\n", "INFO [2014-03-08 06:13:06,123] [Preprocessor.java:241] [main] Processing chromosome C22524\r\n", "Processing chromosome C22524\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:06,152] [Preprocessor.java:241] [main] Processing chromosome C22536\r\n", "Processing chromosome C22536\r\n", "INFO [2014-03-08 06:13:06,170] [Preprocessor.java:241] [main] Processing chromosome C22538\r\n", "Processing chromosome C22538\r\n", "INFO [2014-03-08 06:13:06,191] [Preprocessor.java:241] [main] Processing chromosome C22542\r\n", "Processing chromosome C22542\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:06,208] [Preprocessor.java:241] [main] Processing chromosome C22546\r\n", "Processing chromosome C22546\r\n", "INFO [2014-03-08 06:13:06,237] [Preprocessor.java:241] [main] Processing chromosome C22552\r\n", "Processing chromosome C22552\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:06,247] [Preprocessor.java:241] [main] Processing chromosome C22558\r\n", "Processing chromosome C22558\r\n", "INFO [2014-03-08 06:13:06,284] [Preprocessor.java:241] [main] Processing chromosome C22566\r\n", "Processing chromosome C22566\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:06,307] [Preprocessor.java:241] [main] Processing chromosome C22576\r\n", "Processing chromosome C22576\r\n", "INFO [2014-03-08 06:13:06,311] [Preprocessor.java:241] [main] Processing chromosome C22584\r\n", "Processing chromosome C22584\r\n", "INFO [2014-03-08 06:13:06,339] [Preprocessor.java:241] [main] Processing chromosome C22586\r\n", "Processing chromosome C22586\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:06,362] [Preprocessor.java:241] [main] Processing chromosome C22594\r\n", "Processing chromosome C22594\r\n", "INFO [2014-03-08 06:13:06,398] [Preprocessor.java:241] [main] Processing chromosome C22598\r\n", "Processing chromosome C22598\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:06,461] [Preprocessor.java:241] [main] Processing chromosome C22600\r\n", "Processing chromosome C22600\r\n", "INFO [2014-03-08 06:13:06,477] [Preprocessor.java:241] [main] Processing chromosome C22602\r\n", "Processing chromosome C22602\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:06,526] [Preprocessor.java:241] [main] Processing chromosome C22610\r\n", "Processing chromosome C22610\r\n", "INFO [2014-03-08 06:13:06,547] [Preprocessor.java:241] [main] Processing chromosome C22614\r\n", "Processing chromosome C22614\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:06,569] [Preprocessor.java:241] [main] Processing chromosome C22622\r\n", "Processing chromosome C22622\r\n", "INFO [2014-03-08 06:13:06,603] [Preprocessor.java:241] [main] Processing chromosome C22624\r\n", "Processing chromosome C22624\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:06,630] [Preprocessor.java:241] [main] Processing chromosome C22626\r\n", "Processing chromosome C22626\r\n", "INFO [2014-03-08 06:13:06,651] [Preprocessor.java:241] [main] Processing chromosome C22628\r\n", "Processing chromosome C22628\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:06,710] [Preprocessor.java:241] [main] Processing chromosome C22632\r\n", "Processing chromosome C22632\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:06,724] [Preprocessor.java:241] [main] Processing chromosome C22636\r\n", "Processing chromosome C22636\r\n", "INFO [2014-03-08 06:13:06,730] [Preprocessor.java:241] [main] Processing chromosome C22638\r\n", "Processing chromosome C22638\r\n", "INFO [2014-03-08 06:13:06,761] [Preprocessor.java:241] [main] Processing chromosome C22640\r\n", "Processing chromosome C22640\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:06,776] [Preprocessor.java:241] [main] Processing chromosome C22644\r\n", "Processing chromosome C22644\r\n", "INFO [2014-03-08 06:13:06,786] [Preprocessor.java:241] [main] Processing chromosome C22648\r\n", "Processing chromosome C22648\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:06,826] [Preprocessor.java:241] [main] Processing chromosome C22662\r\n", "Processing chromosome C22662\r\n", "INFO [2014-03-08 06:13:06,850] [Preprocessor.java:241] [main] Processing chromosome C22666\r\n", "Processing chromosome C22666\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:06,881] [Preprocessor.java:241] [main] Processing chromosome C22668\r\n", "Processing chromosome C22668\r\n", "INFO [2014-03-08 06:13:06,897] [Preprocessor.java:241] [main] Processing chromosome C22676\r\n", "Processing chromosome C22676\r\n", "INFO [2014-03-08 06:13:06,915] [Preprocessor.java:241] [main] Processing chromosome C22678\r\n", "Processing chromosome C22678\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:06,931] [Preprocessor.java:241] [main] Processing chromosome C22682\r\n", "Processing chromosome C22682\r\n", "INFO [2014-03-08 06:13:06,949] [Preprocessor.java:241] [main] Processing chromosome C22704\r\n", "Processing chromosome C22704\r\n", "INFO [2014-03-08 06:13:06,957] [Preprocessor.java:241] [main] Processing chromosome C22708\r\n", "Processing chromosome C22708\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:06,996] [Preprocessor.java:241] [main] Processing chromosome C22710\r\n", "Processing chromosome C22710\r\n", "INFO [2014-03-08 06:13:07,000] [Preprocessor.java:241] [main] Processing chromosome C22712\r\n", "Processing chromosome C22712\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:07,065] [Preprocessor.java:241] [main] Processing chromosome C22714\r\n", "Processing chromosome C22714\r\n", "INFO [2014-03-08 06:13:07,075] [Preprocessor.java:241] [main] Processing chromosome C22722\r\n", "Processing chromosome C22722\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:07,094] [Preprocessor.java:241] [main] Processing chromosome C22728\r\n", "Processing chromosome C22728\r\n", "INFO [2014-03-08 06:13:07,113] [Preprocessor.java:241] [main] Processing chromosome C22732\r\n", "Processing chromosome C22732\r\n", "INFO [2014-03-08 06:13:07,124] [Preprocessor.java:241] [main] Processing chromosome C22734\r\n", "Processing chromosome C22734\r\n", "INFO [2014-03-08 06:13:07,132] [Preprocessor.java:241] [main] Processing chromosome C22748\r\n", "Processing chromosome C22748\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:07,153] [Preprocessor.java:241] [main] Processing chromosome C22750\r\n", "Processing chromosome C22750\r\n", "INFO [2014-03-08 06:13:07,168] [Preprocessor.java:241] [main] Processing chromosome C22754\r\n", "Processing chromosome C22754\r\n", "INFO [2014-03-08 06:13:07,184] [Preprocessor.java:241] [main] Processing chromosome C22758\r\n", "Processing chromosome C22758\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:07,195] [Preprocessor.java:241] [main] Processing chromosome C22772\r\n", "Processing chromosome C22772\r\n", "INFO [2014-03-08 06:13:07,205] [Preprocessor.java:241] [main] Processing chromosome C22778\r\n", "Processing chromosome C22778\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:07,237] [Preprocessor.java:241] [main] Processing chromosome C22784\r\n", "Processing chromosome C22784\r\n", "INFO [2014-03-08 06:13:07,263] [Preprocessor.java:241] [main] Processing chromosome C22790\r\n", "Processing chromosome C22790\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:07,307] [Preprocessor.java:241] [main] Processing chromosome C22794\r\n", "Processing chromosome C22794\r\n", "INFO [2014-03-08 06:13:07,332] [Preprocessor.java:241] [main] Processing chromosome C22798\r\n", "Processing chromosome C22798\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:07,355] [Preprocessor.java:241] [main] Processing chromosome C22800\r\n", "Processing chromosome C22800\r\n", "INFO [2014-03-08 06:13:07,375] [Preprocessor.java:241] [main] Processing chromosome C22802\r\n", "Processing chromosome C22802\r\n", "INFO [2014-03-08 06:13:07,390] [Preprocessor.java:241] [main] Processing chromosome C22804\r\n", "Processing chromosome C22804\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:07,431] [Preprocessor.java:241] [main] Processing chromosome C22810\r\n", "Processing chromosome C22810\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:07,456] [Preprocessor.java:241] [main] Processing chromosome C22822\r\n", "Processing chromosome C22822\r\n", "INFO [2014-03-08 06:13:07,482] [Preprocessor.java:241] [main] Processing chromosome C22824\r\n", "Processing chromosome C22824\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:07,513] [Preprocessor.java:241] [main] Processing chromosome C22842\r\n", "Processing chromosome C22842\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:07,558] [Preprocessor.java:241] [main] Processing chromosome C22844\r\n", "Processing chromosome C22844\r\n", "INFO [2014-03-08 06:13:07,586] [Preprocessor.java:241] [main] Processing chromosome C2285\r\n", "Processing chromosome C2285\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:07,657] [Preprocessor.java:241] [main] Processing chromosome C22856\r\n", "Processing chromosome C22856\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:07,691] [Preprocessor.java:241] [main] Processing chromosome C22862\r\n", "Processing chromosome C22862\r\n", "INFO [2014-03-08 06:13:07,729] [Preprocessor.java:241] [main] Processing chromosome C22866\r\n", "Processing chromosome C22866\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:07,757] [Preprocessor.java:241] [main] Processing chromosome C22868\r\n", "Processing chromosome C22868\r\n", "INFO [2014-03-08 06:13:07,782] [Preprocessor.java:241] [main] Processing chromosome C22870\r\n", "Processing chromosome C22870\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:07,855] [Preprocessor.java:241] [main] Processing chromosome C22888\r\n", "Processing chromosome C22888\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:07,907] [Preprocessor.java:241] [main] Processing chromosome C22890\r\n", "Processing chromosome C22890\r\n", "INFO [2014-03-08 06:13:07,915] [Preprocessor.java:241] [main] Processing chromosome C22892\r\n", "Processing chromosome C22892\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:07,956] [Preprocessor.java:241] [main] Processing chromosome C22894\r\n", "Processing chromosome C22894\r\n", "INFO [2014-03-08 06:13:07,965] [Preprocessor.java:241] [main] Processing chromosome C22902\r\n", "Processing chromosome C22902\r\n", "INFO [2014-03-08 06:13:07,970] [Preprocessor.java:241] [main] Processing chromosome C22910\r\n", "Processing chromosome C22910\r\n", "INFO [2014-03-08 06:13:07,981] [Preprocessor.java:241] [main] Processing chromosome C22926\r\n", "Processing chromosome C22926\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:08,044] [Preprocessor.java:241] [main] Processing chromosome C22928\r\n", "Processing chromosome C22928\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:08,055] [Preprocessor.java:241] [main] Processing chromosome C2293\r\n", "Processing chromosome C2293\r\n", "INFO [2014-03-08 06:13:08,090] [Preprocessor.java:241] [main] Processing chromosome C22940\r\n", "Processing chromosome C22940\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:08,144] [Preprocessor.java:241] [main] Processing chromosome C22944\r\n", "Processing chromosome C22944\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:08,164] [Preprocessor.java:241] [main] Processing chromosome C22948\r\n", "Processing chromosome C22948\r\n", "INFO [2014-03-08 06:13:08,192] [Preprocessor.java:241] [main] Processing chromosome C22958\r\n", "Processing chromosome C22958\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:08,240] [Preprocessor.java:241] [main] Processing chromosome C22968\r\n", "Processing chromosome C22968\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:08,261] [Preprocessor.java:241] [main] Processing chromosome C22972\r\n", "Processing chromosome C22972\r\n", "INFO [2014-03-08 06:13:08,311] [Preprocessor.java:241] [main] Processing chromosome C22978\r\n", "Processing chromosome C22978\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:08,340] [Preprocessor.java:241] [main] Processing chromosome C22980\r\n", "Processing chromosome C22980\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:08,368] [Preprocessor.java:241] [main] Processing chromosome C22982\r\n", "Processing chromosome C22982\r\n", "INFO [2014-03-08 06:13:08,390] [Preprocessor.java:241] [main] Processing chromosome C22990\r\n", "Processing chromosome C22990\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:08,433] [Preprocessor.java:241] [main] Processing chromosome C22994\r\n", "Processing chromosome C22994\r\n", "INFO [2014-03-08 06:13:08,459] [Preprocessor.java:241] [main] Processing chromosome C22996\r\n", "Processing chromosome C22996\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:08,500] [Preprocessor.java:241] [main] Processing chromosome C23000\r\n", "Processing chromosome C23000\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:08,532] [Preprocessor.java:241] [main] Processing chromosome C23010\r\n", "Processing chromosome C23010\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:08,579] [Preprocessor.java:241] [main] Processing chromosome C23016\r\n", "Processing chromosome C23016\r\n", "INFO [2014-03-08 06:13:08,595] [Preprocessor.java:241] [main] Processing chromosome C23024\r\n", "Processing chromosome C23024\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:08,629] [Preprocessor.java:241] [main] Processing chromosome C23030\r\n", "Processing chromosome C23030\r\n", "INFO [2014-03-08 06:13:08,667] [Preprocessor.java:241] [main] Processing chromosome C23036\r\n", "Processing chromosome C23036\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:08,696] [Preprocessor.java:241] [main] Processing chromosome C23040\r\n", "Processing chromosome C23040\r\n", "INFO [2014-03-08 06:13:08,705] [Preprocessor.java:241] [main] Processing chromosome C23042\r\n", "Processing chromosome C23042\r\n", "INFO [2014-03-08 06:13:08,710] [Preprocessor.java:241] [main] Processing chromosome C23048\r\n", "Processing chromosome C23048\r\n", "INFO [2014-03-08 06:13:08,722] [Preprocessor.java:241] [main] Processing chromosome C23080\r\n", "Processing chromosome C23080\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:08,739] [Preprocessor.java:241] [main] Processing chromosome C23092\r\n", "Processing chromosome C23092\r\n", "INFO [2014-03-08 06:13:08,752] [Preprocessor.java:241] [main] Processing chromosome C23096\r\n", "Processing chromosome C23096\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:08,789] [Preprocessor.java:241] [main] Processing chromosome C23098\r\n", "Processing chromosome C23098\r\n", "INFO [2014-03-08 06:13:08,820] [Preprocessor.java:241] [main] Processing chromosome C23102\r\n", "Processing chromosome C23102\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:08,847] [Preprocessor.java:241] [main] Processing chromosome C23104\r\n", "Processing chromosome C23104\r\n", "INFO [2014-03-08 06:13:08,878] [Preprocessor.java:241] [main] Processing chromosome C23106\r\n", "Processing chromosome C23106\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:08,886] [Preprocessor.java:241] [main] Processing chromosome C23110\r\n", "Processing chromosome C23110\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:08,961] [Preprocessor.java:241] [main] Processing chromosome C23116\r\n", "Processing chromosome C23116\r\n", "INFO [2014-03-08 06:13:08,976] [Preprocessor.java:241] [main] Processing chromosome C23120\r\n", "Processing chromosome C23120\r\n", "INFO [2014-03-08 06:13:08,981] [Preprocessor.java:241] [main] Processing chromosome C23124\r\n", "Processing chromosome C23124\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:08,997] [Preprocessor.java:241] [main] Processing chromosome C23144\r\n", "Processing chromosome C23144\r\n", "INFO [2014-03-08 06:13:09,003] [Preprocessor.java:241] [main] Processing chromosome C23154\r\n", "Processing chromosome C23154\r\n", "INFO [2014-03-08 06:13:09,020] [Preprocessor.java:241] [main] Processing chromosome C23158\r\n", "Processing chromosome C23158\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:09,053] [Preprocessor.java:241] [main] Processing chromosome C23162\r\n", "Processing chromosome C23162\r\n", "INFO [2014-03-08 06:13:09,085] [Preprocessor.java:241] [main] Processing chromosome C23166\r\n", "Processing chromosome C23166\r\n", "INFO [2014-03-08 06:13:09,088] [Preprocessor.java:241] [main] Processing chromosome C2317\r\n", "Processing chromosome C2317\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:09,120] [Preprocessor.java:241] [main] Processing chromosome C23172\r\n", "Processing chromosome C23172\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:09,169] [Preprocessor.java:241] [main] Processing chromosome C23180\r\n", "Processing chromosome C23180\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:09,222] [Preprocessor.java:241] [main] Processing chromosome C23182\r\n", "Processing chromosome C23182\r\n", "INFO [2014-03-08 06:13:09,243] [Preprocessor.java:241] [main] Processing chromosome C23192\r\n", "Processing chromosome C23192\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:09,276] [Preprocessor.java:241] [main] Processing chromosome C23196\r\n", "Processing chromosome C23196\r\n", "INFO [2014-03-08 06:13:09,295] [Preprocessor.java:241] [main] Processing chromosome C23210\r\n", "Processing chromosome C23210\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:09,301] [Preprocessor.java:241] [main] Processing chromosome C23214\r\n", "Processing chromosome C23214\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:09,357] [Preprocessor.java:241] [main] Processing chromosome C23220\r\n", "Processing chromosome C23220\r\n", "INFO [2014-03-08 06:13:09,369] [Preprocessor.java:241] [main] Processing chromosome C23222\r\n", "Processing chromosome C23222\r\n", "INFO [2014-03-08 06:13:09,377] [Preprocessor.java:241] [main] Processing chromosome C23230\r\n", "Processing chromosome C23230\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:09,433] [Preprocessor.java:241] [main] Processing chromosome C23232\r\n", "Processing chromosome C23232\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:09,469] [Preprocessor.java:241] [main] Processing chromosome C23238\r\n", "Processing chromosome C23238\r\n", "INFO [2014-03-08 06:13:09,483] [Preprocessor.java:241] [main] Processing chromosome C23248\r\n", "Processing chromosome C23248\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:09,504] [Preprocessor.java:241] [main] Processing chromosome C23254\r\n", "Processing chromosome C23254\r\n", "INFO [2014-03-08 06:13:09,519] [Preprocessor.java:241] [main] Processing chromosome C23256\r\n", "Processing chromosome C23256\r\n", "INFO [2014-03-08 06:13:09,545] [Preprocessor.java:241] [main] Processing chromosome C23258\r\n", "Processing chromosome C23258\r\n", "INFO [2014-03-08 06:13:09,553] [Preprocessor.java:241] [main] Processing chromosome C23264\r\n", "Processing chromosome C23264\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:09,599] [Preprocessor.java:241] [main] Processing chromosome C23272\r\n", "Processing chromosome C23272\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:09,639] [Preprocessor.java:241] [main] Processing chromosome C23274\r\n", "Processing chromosome C23274\r\n", "INFO [2014-03-08 06:13:09,645] [Preprocessor.java:241] [main] Processing chromosome C23276\r\n", "Processing chromosome C23276\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:09,667] [Preprocessor.java:241] [main] Processing chromosome C23278\r\n", "Processing chromosome C23278\r\n", "INFO [2014-03-08 06:13:09,678] [Preprocessor.java:241] [main] Processing chromosome C23298\r\n", "Processing chromosome C23298\r\n", "INFO [2014-03-08 06:13:09,705] [Preprocessor.java:241] [main] Processing chromosome C23316\r\n", "Processing chromosome C23316\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:09,742] [Preprocessor.java:241] [main] Processing chromosome C23328\r\n", "Processing chromosome C23328\r\n", "INFO [2014-03-08 06:13:09,756] [Preprocessor.java:241] [main] Processing chromosome C23330\r\n", "Processing chromosome C23330\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:09,775] [Preprocessor.java:241] [main] Processing chromosome C23338\r\n", "Processing chromosome C23338\r\n", "INFO [2014-03-08 06:13:09,804] [Preprocessor.java:241] [main] Processing chromosome C23360\r\n", "Processing chromosome C23360\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:09,832] [Preprocessor.java:241] [main] Processing chromosome C23362\r\n", "Processing chromosome C23362\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:09,896] [Preprocessor.java:241] [main] Processing chromosome C23366\r\n", "Processing chromosome C23366\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:09,963] [Preprocessor.java:241] [main] Processing chromosome C23370\r\n", "Processing chromosome C23370\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:10,007] [Preprocessor.java:241] [main] Processing chromosome C23372\r\n", "Processing chromosome C23372\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:10,045] [Preprocessor.java:241] [main] Processing chromosome C23378\r\n", "Processing chromosome C23378\r\n", "INFO [2014-03-08 06:13:10,052] [Preprocessor.java:241] [main] Processing chromosome C23390\r\n", "Processing chromosome C23390\r\n", "INFO [2014-03-08 06:13:10,065] [Preprocessor.java:241] [main] Processing chromosome C23400\r\n", "Processing chromosome C23400\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:10,101] [Preprocessor.java:241] [main] Processing chromosome C23422\r\n", "Processing chromosome C23422\r\n", "INFO [2014-03-08 06:13:10,116] [Preprocessor.java:241] [main] Processing chromosome C23424\r\n", "Processing chromosome C23424\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:10,141] [Preprocessor.java:241] [main] Processing chromosome C23426\r\n", "Processing chromosome C23426\r\n", "INFO [2014-03-08 06:13:10,162] [Preprocessor.java:241] [main] Processing chromosome C23428\r\n", "Processing chromosome C23428\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:10,191] [Preprocessor.java:241] [main] Processing chromosome C23432\r\n", "Processing chromosome C23432\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:10,228] [Preprocessor.java:241] [main] Processing chromosome C23438\r\n", "Processing chromosome C23438\r\n", "INFO [2014-03-08 06:13:10,244] [Preprocessor.java:241] [main] Processing chromosome C23440\r\n", "Processing chromosome C23440\r\n", "INFO [2014-03-08 06:13:10,250] [Preprocessor.java:241] [main] Processing chromosome C23442\r\n", "Processing chromosome C23442\r\n", "INFO [2014-03-08 06:13:10,272] [Preprocessor.java:241] [main] Processing chromosome C23444\r\n", "Processing chromosome C23444\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:10,300] [Preprocessor.java:241] [main] Processing chromosome C23446\r\n", "Processing chromosome C23446\r\n", "INFO [2014-03-08 06:13:10,313] [Preprocessor.java:241] [main] Processing chromosome C23452\r\n", "Processing chromosome C23452\r\n", "INFO [2014-03-08 06:13:10,316] [Preprocessor.java:241] [main] Processing chromosome C23454\r\n", "Processing chromosome C23454\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:10,337] [Preprocessor.java:241] [main] Processing chromosome C23460\r\n", "Processing chromosome C23460\r\n", "INFO [2014-03-08 06:13:10,368] [Preprocessor.java:241] [main] Processing chromosome C23468\r\n", "Processing chromosome C23468\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:10,382] [Preprocessor.java:241] [main] Processing chromosome C23470\r\n", "Processing chromosome C23470\r\n", "INFO [2014-03-08 06:13:10,415] [Preprocessor.java:241] [main] Processing chromosome C23472\r\n", "Processing chromosome C23472\r\n", "INFO [2014-03-08 06:13:10,424] [Preprocessor.java:241] [main] Processing chromosome C23482\r\n", "Processing chromosome C23482\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:10,436] [Preprocessor.java:241] [main] Processing chromosome C23484\r\n", "Processing chromosome C23484\r\n", "INFO [2014-03-08 06:13:10,447] [Preprocessor.java:241] [main] Processing chromosome C23490\r\n", "Processing chromosome C23490\r\n", "INFO [2014-03-08 06:13:10,452] [Preprocessor.java:241] [main] Processing chromosome C23492\r\n", "Processing chromosome C23492\r\n", "INFO [2014-03-08 06:13:10,471] [Preprocessor.java:241] [main] Processing chromosome C23494\r\n", "Processing chromosome C23494\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:10,494] [Preprocessor.java:241] [main] Processing chromosome C23498\r\n", "Processing chromosome C23498\r\n", "INFO [2014-03-08 06:13:10,533] [Preprocessor.java:241] [main] Processing chromosome C23500\r\n", "Processing chromosome C23500\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:10,571] [Preprocessor.java:241] [main] Processing chromosome C23502\r\n", "Processing chromosome C23502\r\n", "INFO [2014-03-08 06:13:10,574] [Preprocessor.java:241] [main] Processing chromosome C23512\r\n", "Processing chromosome C23512\r\n", "INFO [2014-03-08 06:13:10,578] [Preprocessor.java:241] [main] Processing chromosome C23514\r\n", "Processing chromosome C23514\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:10,604] [Preprocessor.java:241] [main] Processing chromosome C23530\r\n", "Processing chromosome C23530\r\n", "INFO [2014-03-08 06:13:10,611] [Preprocessor.java:241] [main] Processing chromosome C23564\r\n", "Processing chromosome C23564\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:10,638] [Preprocessor.java:241] [main] Processing chromosome C23566\r\n", "Processing chromosome C23566\r\n", "INFO [2014-03-08 06:13:10,652] [Preprocessor.java:241] [main] Processing chromosome C23570\r\n", "Processing chromosome C23570\r\n", "INFO [2014-03-08 06:13:10,672] [Preprocessor.java:241] [main] Processing chromosome C23572\r\n", "Processing chromosome C23572\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:10,691] [Preprocessor.java:241] [main] Processing chromosome C23580\r\n", "Processing chromosome C23580\r\n", "INFO [2014-03-08 06:13:10,726] [Preprocessor.java:241] [main] Processing chromosome C23582\r\n", "Processing chromosome C23582\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:10,750] [Preprocessor.java:241] [main] Processing chromosome C23586\r\n", "Processing chromosome C23586\r\n", "INFO [2014-03-08 06:13:10,780] [Preprocessor.java:241] [main] Processing chromosome C23592\r\n", "Processing chromosome C23592\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:10,809] [Preprocessor.java:241] [main] Processing chromosome C23594\r\n", "Processing chromosome C23594\r\n", "INFO [2014-03-08 06:13:10,830] [Preprocessor.java:241] [main] Processing chromosome C23608\r\n", "Processing chromosome C23608\r\n", "INFO [2014-03-08 06:13:10,839] [Preprocessor.java:241] [main] Processing chromosome C23616\r\n", "Processing chromosome C23616\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:10,868] [Preprocessor.java:241] [main] Processing chromosome C23638\r\n", "Processing chromosome C23638\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:10,944] [Preprocessor.java:241] [main] Processing chromosome C23642\r\n", "Processing chromosome C23642\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:10,989] [Preprocessor.java:241] [main] Processing chromosome C23648\r\n", "Processing chromosome C23648\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:11,016] [Preprocessor.java:241] [main] Processing chromosome C23662\r\n", "Processing chromosome C23662\r\n", "INFO [2014-03-08 06:13:11,023] [Preprocessor.java:241] [main] Processing chromosome C23676\r\n", "Processing chromosome C23676\r\n", "INFO [2014-03-08 06:13:11,044] [Preprocessor.java:241] [main] Processing chromosome C23682\r\n", "Processing chromosome C23682\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:11,058] [Preprocessor.java:241] [main] Processing chromosome C23690\r\n", "Processing chromosome C23690\r\n", "INFO [2014-03-08 06:13:11,064] [Preprocessor.java:241] [main] Processing chromosome C23700\r\n", "Processing chromosome C23700\r\n", "INFO [2014-03-08 06:13:11,069] [Preprocessor.java:241] [main] Processing chromosome C23702\r\n", "Processing chromosome C23702\r\n", "INFO [2014-03-08 06:13:11,095] [Preprocessor.java:241] [main] Processing chromosome C23714\r\n", "Processing chromosome C23714\r\n", "INFO [2014-03-08 06:13:11,100] [Preprocessor.java:241] [main] Processing chromosome C23716\r\n", "Processing chromosome C23716\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:11,137] [Preprocessor.java:241] [main] Processing chromosome C23726\r\n", "Processing chromosome C23726\r\n", "INFO [2014-03-08 06:13:11,140] [Preprocessor.java:241] [main] Processing chromosome C23732\r\n", "Processing chromosome C23732\r\n", "INFO [2014-03-08 06:13:11,151] [Preprocessor.java:241] [main] Processing chromosome C23734\r\n", "Processing chromosome C23734\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:11,198] [Preprocessor.java:241] [main] Processing chromosome C23742\r\n", "Processing chromosome C23742\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:11,217] [Preprocessor.java:241] [main] Processing chromosome C23744\r\n", "Processing chromosome C23744\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:11,266] [Preprocessor.java:241] [main] Processing chromosome C23756\r\n", "Processing chromosome C23756\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:11,319] [Preprocessor.java:241] [main] Processing chromosome C23760\r\n", "Processing chromosome C23760\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:11,396] [Preprocessor.java:241] [main] Processing chromosome C23762\r\n", "Processing chromosome C23762\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:11,436] [Preprocessor.java:241] [main] Processing chromosome C23772\r\n", "Processing chromosome C23772\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:11,473] [Preprocessor.java:241] [main] Processing chromosome C23776\r\n", "Processing chromosome C23776\r\n", "INFO [2014-03-08 06:13:11,479] [Preprocessor.java:241] [main] Processing chromosome C23778\r\n", "Processing chromosome C23778\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:11,537] [Preprocessor.java:241] [main] Processing chromosome C23786\r\n", "Processing chromosome C23786\r\n", "INFO [2014-03-08 06:13:11,549] [Preprocessor.java:241] [main] Processing chromosome C23796\r\n", "Processing chromosome C23796\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:11,580] [Preprocessor.java:241] [main] Processing chromosome C23800\r\n", "Processing chromosome C23800\r\n", "INFO [2014-03-08 06:13:11,588] [Preprocessor.java:241] [main] Processing chromosome C23804\r\n", "Processing chromosome C23804\r\n", "INFO [2014-03-08 06:13:11,593] [Preprocessor.java:241] [main] Processing chromosome C23808\r\n", "Processing chromosome C23808\r\n", "INFO [2014-03-08 06:13:11,598] [Preprocessor.java:241] [main] Processing chromosome C23812\r\n", "Processing chromosome C23812\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:11,627] [Preprocessor.java:241] [main] Processing chromosome C23818\r\n", "Processing chromosome C23818\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:11,670] [Preprocessor.java:241] [main] Processing chromosome C23822\r\n", "Processing chromosome C23822\r\n", "INFO [2014-03-08 06:13:11,710] [Preprocessor.java:241] [main] Processing chromosome C23828\r\n", "Processing chromosome C23828\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:11,741] [Preprocessor.java:241] [main] Processing chromosome C23836\r\n", "Processing chromosome C23836\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:11,802] [Preprocessor.java:241] [main] Processing chromosome C23838\r\n", "Processing chromosome C23838\r\n", "INFO [2014-03-08 06:13:11,815] [Preprocessor.java:241] [main] Processing chromosome C23856\r\n", "Processing chromosome C23856\r\n", "INFO [2014-03-08 06:13:11,821] [Preprocessor.java:241] [main] Processing chromosome C23858\r\n", "Processing chromosome C23858\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:11,843] [Preprocessor.java:241] [main] Processing chromosome C23860\r\n", "Processing chromosome C23860\r\n", "INFO [2014-03-08 06:13:11,866] [Preprocessor.java:241] [main] Processing chromosome C23866\r\n", "Processing chromosome C23866\r\n", "INFO [2014-03-08 06:13:11,869] [Preprocessor.java:241] [main] Processing chromosome C23868\r\n", "Processing chromosome C23868\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:11,923] [Preprocessor.java:241] [main] Processing chromosome C23882\r\n", "Processing chromosome C23882\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:11,946] [Preprocessor.java:241] [main] Processing chromosome C23886\r\n", "Processing chromosome C23886\r\n", "INFO [2014-03-08 06:13:11,978] [Preprocessor.java:241] [main] Processing chromosome C23890\r\n", "Processing chromosome C23890\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:12,014] [Preprocessor.java:241] [main] Processing chromosome C23896\r\n", "Processing chromosome C23896\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:12,052] [Preprocessor.java:241] [main] Processing chromosome C23900\r\n", "Processing chromosome C23900\r\n", "INFO [2014-03-08 06:13:12,074] [Preprocessor.java:241] [main] Processing chromosome C23904\r\n", "Processing chromosome C23904\r\n", "INFO [2014-03-08 06:13:12,078] [Preprocessor.java:241] [main] Processing chromosome C23908\r\n", "Processing chromosome C23908\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:12,083] [Preprocessor.java:241] [main] Processing chromosome C23922\r\n", "Processing chromosome C23922\r\n", "INFO [2014-03-08 06:13:12,100] [Preprocessor.java:241] [main] Processing chromosome C23926\r\n", "Processing chromosome C23926\r\n", "INFO [2014-03-08 06:13:12,115] [Preprocessor.java:241] [main] Processing chromosome C23930\r\n", "Processing chromosome C23930\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:12,151] [Preprocessor.java:241] [main] Processing chromosome C23944\r\n", "Processing chromosome C23944\r\n", "INFO [2014-03-08 06:13:12,161] [Preprocessor.java:241] [main] Processing chromosome C23946\r\n", "Processing chromosome C23946\r\n", "INFO [2014-03-08 06:13:12,173] [Preprocessor.java:241] [main] Processing chromosome C23956\r\n", "Processing chromosome C23956\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:12,191] [Preprocessor.java:241] [main] Processing chromosome C23968\r\n", "Processing chromosome C23968\r\n", "INFO [2014-03-08 06:13:12,198] [Preprocessor.java:241] [main] Processing chromosome C23974\r\n", "Processing chromosome C23974\r\n", "INFO [2014-03-08 06:13:12,206] [Preprocessor.java:241] [main] Processing chromosome C24000\r\n", "Processing chromosome C24000\r\n", "INFO [2014-03-08 06:13:12,235] [Preprocessor.java:241] [main] Processing chromosome C24008\r\n", "Processing chromosome C24008\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:12,281] [Preprocessor.java:241] [main] Processing chromosome C24014\r\n", "Processing chromosome C24014\r\n", "INFO [2014-03-08 06:13:12,288] [Preprocessor.java:241] [main] Processing chromosome C24020\r\n", "Processing chromosome C24020\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:12,317] [Preprocessor.java:241] [main] Processing chromosome C24022\r\n", "Processing chromosome C24022\r\n", "INFO [2014-03-08 06:13:12,330] [Preprocessor.java:241] [main] Processing chromosome C24024\r\n", "Processing chromosome C24024\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:12,360] [Preprocessor.java:241] [main] Processing chromosome C24030\r\n", "Processing chromosome C24030\r\n", "INFO [2014-03-08 06:13:12,389] [Preprocessor.java:241] [main] Processing chromosome C24036\r\n", "Processing chromosome C24036\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:12,431] [Preprocessor.java:241] [main] Processing chromosome C24042\r\n", "Processing chromosome C24042\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:12,453] [Preprocessor.java:241] [main] Processing chromosome C24044\r\n", "Processing chromosome C24044\r\n", "INFO [2014-03-08 06:13:12,459] [Preprocessor.java:241] [main] Processing chromosome C24052\r\n", "Processing chromosome C24052\r\n", "INFO [2014-03-08 06:13:12,492] [Preprocessor.java:241] [main] Processing chromosome C24068\r\n", "Processing chromosome C24068\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:12,532] [Preprocessor.java:241] [main] Processing chromosome C24074\r\n", "Processing chromosome C24074\r\n", "INFO [2014-03-08 06:13:12,547] [Preprocessor.java:241] [main] Processing chromosome C24090\r\n", "Processing chromosome C24090\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:12,582] [Preprocessor.java:241] [main] Processing chromosome C24098\r\n", "Processing chromosome C24098\r\n", "INFO [2014-03-08 06:13:12,589] [Preprocessor.java:241] [main] Processing chromosome C24112\r\n", "Processing chromosome C24112\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:12,603] [Preprocessor.java:241] [main] Processing chromosome C24114\r\n", "Processing chromosome C24114\r\n", "INFO [2014-03-08 06:13:12,625] [Preprocessor.java:241] [main] Processing chromosome C24118\r\n", "Processing chromosome C24118\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:12,652] [Preprocessor.java:241] [main] Processing chromosome C24128\r\n", "Processing chromosome C24128\r\n", "INFO [2014-03-08 06:13:12,676] [Preprocessor.java:241] [main] Processing chromosome C24134\r\n", "Processing chromosome C24134\r\n", "INFO [2014-03-08 06:13:12,686] [Preprocessor.java:241] [main] Processing chromosome C24138\r\n", "Processing chromosome C24138\r\n", "INFO [2014-03-08 06:13:12,691] [Preprocessor.java:241] [main] Processing chromosome C24148\r\n", "Processing chromosome C24148\r\n", "INFO [2014-03-08 06:13:12,701] [Preprocessor.java:241] [main] Processing chromosome C24156\r\n", "Processing chromosome C24156\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:12,710] [Preprocessor.java:241] [main] Processing chromosome C24158\r\n", "Processing chromosome C24158\r\n", "INFO [2014-03-08 06:13:12,735] [Preprocessor.java:241] [main] Processing chromosome C24160\r\n", "Processing chromosome C24160\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:12,763] [Preprocessor.java:241] [main] Processing chromosome C24184\r\n", "Processing chromosome C24184\r\n", "INFO [2014-03-08 06:13:12,787] [Preprocessor.java:241] [main] Processing chromosome C24196\r\n", "Processing chromosome C24196\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:12,807] [Preprocessor.java:241] [main] Processing chromosome C24204\r\n", "Processing chromosome C24204\r\n", "INFO [2014-03-08 06:13:12,811] [Preprocessor.java:241] [main] Processing chromosome C24224\r\n", "Processing chromosome C24224\r\n", "INFO [2014-03-08 06:13:12,846] [Preprocessor.java:241] [main] Processing chromosome C24226\r\n", "Processing chromosome C24226\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:12,862] [Preprocessor.java:241] [main] Processing chromosome C24232\r\n", "Processing chromosome C24232\r\n", "INFO [2014-03-08 06:13:12,896] [Preprocessor.java:241] [main] Processing chromosome C24242\r\n", "Processing chromosome C24242\r\n", "INFO [2014-03-08 06:13:12,908] [Preprocessor.java:241] [main] Processing chromosome C24244\r\n", "Processing chromosome C24244\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:12,942] [Preprocessor.java:241] [main] Processing chromosome C24248\r\n", "Processing chromosome C24248\r\n", "INFO [2014-03-08 06:13:12,953] [Preprocessor.java:241] [main] Processing chromosome C24252\r\n", "Processing chromosome C24252\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:12,973] [Preprocessor.java:241] [main] Processing chromosome C24254\r\n", "Processing chromosome C24254\r\n", "INFO [2014-03-08 06:13:12,986] [Preprocessor.java:241] [main] Processing chromosome C24270\r\n", "Processing chromosome C24270\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:13,019] [Preprocessor.java:241] [main] Processing chromosome C24274\r\n", "Processing chromosome C24274\r\n", "INFO [2014-03-08 06:13:13,037] [Preprocessor.java:241] [main] Processing chromosome C24276\r\n", "Processing chromosome C24276\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:13,084] [Preprocessor.java:241] [main] Processing chromosome C24280\r\n", "Processing chromosome C24280\r\n", "INFO [2014-03-08 06:13:13,116] [Preprocessor.java:241] [main] Processing chromosome C24292\r\n", "Processing chromosome C24292\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:13,140] [Preprocessor.java:241] [main] Processing chromosome C24294\r\n", "Processing chromosome C24294\r\n", "INFO [2014-03-08 06:13:13,150] [Preprocessor.java:241] [main] Processing chromosome C24316\r\n", "Processing chromosome C24316\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:13,195] [Preprocessor.java:241] [main] Processing chromosome C24318\r\n", "Processing chromosome C24318\r\n", "INFO [2014-03-08 06:13:13,201] [Preprocessor.java:241] [main] Processing chromosome C24320\r\n", "Processing chromosome C24320\r\n", "INFO [2014-03-08 06:13:13,210] [Preprocessor.java:241] [main] Processing chromosome C24328\r\n", "Processing chromosome C24328\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:13,222] [Preprocessor.java:241] [main] Processing chromosome C24334\r\n", "Processing chromosome C24334\r\n", "INFO [2014-03-08 06:13:13,247] [Preprocessor.java:241] [main] Processing chromosome C24342\r\n", "Processing chromosome C24342\r\n", "INFO [2014-03-08 06:13:13,258] [Preprocessor.java:241] [main] Processing chromosome C24346\r\n", "Processing chromosome C24346\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:13,294] [Preprocessor.java:241] [main] Processing chromosome C24380\r\n", "Processing chromosome C24380\r\n", "INFO [2014-03-08 06:13:13,308] [Preprocessor.java:241] [main] Processing chromosome C24384\r\n", "Processing chromosome C24384\r\n", "INFO [2014-03-08 06:13:13,319] [Preprocessor.java:241] [main] Processing chromosome C24398\r\n", "Processing chromosome C24398\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:13,372] [Preprocessor.java:241] [main] Processing chromosome C24400\r\n", "Processing chromosome C24400\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:13,416] [Preprocessor.java:241] [main] Processing chromosome C24418\r\n", "Processing chromosome C24418\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:13,429] [Preprocessor.java:241] [main] Processing chromosome C24420\r\n", "Processing chromosome C24420\r\n", "INFO [2014-03-08 06:13:13,443] [Preprocessor.java:241] [main] Processing chromosome C24426\r\n", "Processing chromosome C24426\r\n", "INFO [2014-03-08 06:13:13,449] [Preprocessor.java:241] [main] Processing chromosome C24428\r\n", "Processing chromosome C24428\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:13,488] [Preprocessor.java:241] [main] Processing chromosome C24432\r\n", "Processing chromosome C24432\r\n", "INFO [2014-03-08 06:13:13,512] [Preprocessor.java:241] [main] Processing chromosome C24436\r\n", "Processing chromosome C24436\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:13,529] [Preprocessor.java:241] [main] Processing chromosome C24438\r\n", "Processing chromosome C24438\r\n", "INFO [2014-03-08 06:13:13,553] [Preprocessor.java:241] [main] Processing chromosome C24440\r\n", "Processing chromosome C24440\r\n", "INFO [2014-03-08 06:13:13,574] [Preprocessor.java:241] [main] Processing chromosome C24442\r\n", "Processing chromosome C24442\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:13,617] [Preprocessor.java:241] [main] Processing chromosome C24446\r\n", "Processing chromosome C24446\r\n", "INFO [2014-03-08 06:13:13,622] [Preprocessor.java:241] [main] Processing chromosome C24450\r\n", "Processing chromosome C24450\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:13,657] [Preprocessor.java:241] [main] Processing chromosome C24454\r\n", "Processing chromosome C24454\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:13,766] [Preprocessor.java:241] [main] Processing chromosome C24456\r\n", "Processing chromosome C24456\r\n", "INFO [2014-03-08 06:13:13,773] [Preprocessor.java:241] [main] Processing chromosome C24464\r\n", "Processing chromosome C24464\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:13,807] [Preprocessor.java:241] [main] Processing chromosome C24478\r\n", "Processing chromosome C24478\r\n", "INFO [2014-03-08 06:13:13,828] [Preprocessor.java:241] [main] Processing chromosome C24494\r\n", "Processing chromosome C24494\r\n", "INFO [2014-03-08 06:13:13,842] [Preprocessor.java:241] [main] Processing chromosome C24498\r\n", "Processing chromosome C24498\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:13,863] [Preprocessor.java:241] [main] Processing chromosome C24514\r\n", "Processing chromosome C24514\r\n", "INFO [2014-03-08 06:13:13,888] [Preprocessor.java:241] [main] Processing chromosome C24516\r\n", "Processing chromosome C24516\r\n", "INFO [2014-03-08 06:13:13,895] [Preprocessor.java:241] [main] Processing chromosome C24520\r\n", "Processing chromosome C24520\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:13,932] [Preprocessor.java:241] [main] Processing chromosome C24524\r\n", "Processing chromosome C24524\r\n", "INFO [2014-03-08 06:13:13,948] [Preprocessor.java:241] [main] Processing chromosome C24530\r\n", "Processing chromosome C24530\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:13,953] [Preprocessor.java:241] [main] Processing chromosome C24536\r\n", "Processing chromosome C24536\r\n", "INFO [2014-03-08 06:13:13,962] [Preprocessor.java:241] [main] Processing chromosome C24538\r\n", "Processing chromosome C24538\r\n", "INFO [2014-03-08 06:13:13,966] [Preprocessor.java:241] [main] Processing chromosome C24556\r\n", "Processing chromosome C24556\r\n", "INFO [2014-03-08 06:13:13,975] [Preprocessor.java:241] [main] Processing chromosome C24562\r\n", "Processing chromosome C24562\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:14,025] [Preprocessor.java:241] [main] Processing chromosome C24564\r\n", "Processing chromosome C24564\r\n", "INFO [2014-03-08 06:13:14,046] [Preprocessor.java:241] [main] Processing chromosome C24566\r\n", "Processing chromosome C24566\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:14,082] [Preprocessor.java:241] [main] Processing chromosome C24570\r\n", "Processing chromosome C24570\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:14,129] [Preprocessor.java:241] [main] Processing chromosome C24580\r\n", "Processing chromosome C24580\r\n", "INFO [2014-03-08 06:13:14,138] [Preprocessor.java:241] [main] Processing chromosome C24588\r\n", "Processing chromosome C24588\r\n", "INFO [2014-03-08 06:13:14,141] [Preprocessor.java:241] [main] Processing chromosome C2459\r\n", "Processing chromosome C2459\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:14,173] [Preprocessor.java:241] [main] Processing chromosome C24590\r\n", "Processing chromosome C24590\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:14,218] [Preprocessor.java:241] [main] Processing chromosome C24604\r\n", "Processing chromosome C24604\r\n", "INFO [2014-03-08 06:13:14,222] [Preprocessor.java:241] [main] Processing chromosome C24608\r\n", "Processing chromosome C24608\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:14,271] [Preprocessor.java:241] [main] Processing chromosome C24616\r\n", "Processing chromosome C24616\r\n", "INFO [2014-03-08 06:13:14,293] [Preprocessor.java:241] [main] Processing chromosome C24628\r\n", "Processing chromosome C24628\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:14,334] [Preprocessor.java:241] [main] Processing chromosome C24632\r\n", "Processing chromosome C24632\r\n", "INFO [2014-03-08 06:13:14,355] [Preprocessor.java:241] [main] Processing chromosome C24634\r\n", "Processing chromosome C24634\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:14,385] [Preprocessor.java:241] [main] Processing chromosome C24640\r\n", "Processing chromosome C24640\r\n", "INFO [2014-03-08 06:13:14,389] [Preprocessor.java:241] [main] Processing chromosome C24642\r\n", "Processing chromosome C24642\r\n", "INFO [2014-03-08 06:13:14,400] [Preprocessor.java:241] [main] Processing chromosome C24650\r\n", "Processing chromosome C24650\r\n", "INFO [2014-03-08 06:13:14,409] [Preprocessor.java:241] [main] Processing chromosome C24654\r\n", "Processing chromosome C24654\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:14,425] [Preprocessor.java:241] [main] Processing chromosome C24658\r\n", "Processing chromosome C24658\r\n", "INFO [2014-03-08 06:13:14,429] [Preprocessor.java:241] [main] Processing chromosome C24672\r\n", "Processing chromosome C24672\r\n", "INFO [2014-03-08 06:13:14,443] [Preprocessor.java:241] [main] Processing chromosome C24676\r\n", "Processing chromosome C24676\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:14,477] [Preprocessor.java:241] [main] Processing chromosome C24678\r\n", "Processing chromosome C24678\r\n", "INFO [2014-03-08 06:13:14,507] [Preprocessor.java:241] [main] Processing chromosome C24682\r\n", "Processing chromosome C24682\r\n", "INFO [2014-03-08 06:13:14,512] [Preprocessor.java:241] [main] Processing chromosome C24686\r\n", "Processing chromosome C24686\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:14,531] [Preprocessor.java:241] [main] Processing chromosome C2469\r\n", "Processing chromosome C2469\r\n", "INFO [2014-03-08 06:13:14,561] [Preprocessor.java:241] [main] Processing chromosome C24698\r\n", "Processing chromosome C24698\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:14,593] [Preprocessor.java:241] [main] Processing chromosome C24704\r\n", "Processing chromosome C24704\r\n", "INFO [2014-03-08 06:13:14,607] [Preprocessor.java:241] [main] Processing chromosome C24710\r\n", "Processing chromosome C24710\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:14,630] [Preprocessor.java:241] [main] Processing chromosome C24718\r\n", "Processing chromosome C24718\r\n", "INFO [2014-03-08 06:13:14,674] [Preprocessor.java:241] [main] Processing chromosome C24724\r\n", "Processing chromosome C24724\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:14,703] [Preprocessor.java:241] [main] Processing chromosome C24726\r\n", "Processing chromosome C24726\r\n", "INFO [2014-03-08 06:13:14,709] [Preprocessor.java:241] [main] Processing chromosome C24734\r\n", "Processing chromosome C24734\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:14,736] [Preprocessor.java:241] [main] Processing chromosome C24740\r\n", "Processing chromosome C24740\r\n", "INFO [2014-03-08 06:13:14,749] [Preprocessor.java:241] [main] Processing chromosome C24744\r\n", "Processing chromosome C24744\r\n", "INFO [2014-03-08 06:13:14,765] [Preprocessor.java:241] [main] Processing chromosome C24748\r\n", "Processing chromosome C24748\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:14,786] [Preprocessor.java:241] [main] Processing chromosome C24750\r\n", "Processing chromosome C24750\r\n", "INFO [2014-03-08 06:13:14,813] [Preprocessor.java:241] [main] Processing chromosome C24756\r\n", "Processing chromosome C24756\r\n", "INFO [2014-03-08 06:13:14,818] [Preprocessor.java:241] [main] Processing chromosome C24758\r\n", "Processing chromosome C24758\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:14,841] [Preprocessor.java:241] [main] Processing chromosome C24766\r\n", "Processing chromosome C24766\r\n", "INFO [2014-03-08 06:13:14,849] [Preprocessor.java:241] [main] Processing chromosome C24778\r\n", "Processing chromosome C24778\r\n", "INFO [2014-03-08 06:13:14,852] [Preprocessor.java:241] [main] Processing chromosome C2479\r\n", "Processing chromosome C2479\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:14,926] [Preprocessor.java:241] [main] Processing chromosome C24790\r\n", "Processing chromosome C24790\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:14,973] [Preprocessor.java:241] [main] Processing chromosome C24804\r\n", "Processing chromosome C24804\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:15,017] [Preprocessor.java:241] [main] Processing chromosome C24814\r\n", "Processing chromosome C24814\r\n", "INFO [2014-03-08 06:13:15,038] [Preprocessor.java:241] [main] Processing chromosome C24818\r\n", "Processing chromosome C24818\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:15,086] [Preprocessor.java:241] [main] Processing chromosome C24820\r\n", "Processing chromosome C24820\r\n", "INFO [2014-03-08 06:13:15,103] [Preprocessor.java:241] [main] Processing chromosome C24824\r\n", "Processing chromosome C24824\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:15,154] [Preprocessor.java:241] [main] Processing chromosome C24826\r\n", "Processing chromosome C24826\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:15,198] [Preprocessor.java:241] [main] Processing chromosome C24828\r\n", "Processing chromosome C24828\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:15,214] [Preprocessor.java:241] [main] Processing chromosome C24850\r\n", "Processing chromosome C24850\r\n", "INFO [2014-03-08 06:13:15,226] [Preprocessor.java:241] [main] Processing chromosome C24862\r\n", "Processing chromosome C24862\r\n", "INFO [2014-03-08 06:13:15,248] [Preprocessor.java:241] [main] Processing chromosome C24868\r\n", "Processing chromosome C24868\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:15,280] [Preprocessor.java:241] [main] Processing chromosome C24874\r\n", "Processing chromosome C24874\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:15,321] [Preprocessor.java:241] [main] Processing chromosome C24888\r\n", "Processing chromosome C24888\r\n", "INFO [2014-03-08 06:13:15,357] [Preprocessor.java:241] [main] Processing chromosome C24892\r\n", "Processing chromosome C24892\r\n", "INFO [2014-03-08 06:13:15,361] [Preprocessor.java:241] [main] Processing chromosome C24900\r\n", "Processing chromosome C24900\r\n", "INFO [2014-03-08 06:13:15,363] [Preprocessor.java:241] [main] Processing chromosome C24902\r\n", "Processing chromosome C24902\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:15,376] [Preprocessor.java:241] [main] Processing chromosome C24910\r\n", "Processing chromosome C24910\r\n", "INFO [2014-03-08 06:13:15,400] [Preprocessor.java:241] [main] Processing chromosome C24914\r\n", "Processing chromosome C24914\r\n", "INFO [2014-03-08 06:13:15,406] [Preprocessor.java:241] [main] Processing chromosome C24916\r\n", "Processing chromosome C24916\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:15,473] [Preprocessor.java:241] [main] Processing chromosome C24920\r\n", "Processing chromosome C24920\r\n", "INFO [2014-03-08 06:13:15,479] [Preprocessor.java:241] [main] Processing chromosome C24932\r\n", "Processing chromosome C24932\r\n", "INFO [2014-03-08 06:13:15,508] [Preprocessor.java:241] [main] Processing chromosome C24934\r\n", "Processing chromosome C24934\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:15,540] [Preprocessor.java:241] [main] Processing chromosome C24942\r\n", "Processing chromosome C24942\r\n", "INFO [2014-03-08 06:13:15,566] [Preprocessor.java:241] [main] Processing chromosome C24952\r\n", "Processing chromosome C24952\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:15,612] [Preprocessor.java:241] [main] Processing chromosome C24954\r\n", "Processing chromosome C24954\r\n", "INFO [2014-03-08 06:13:15,616] [Preprocessor.java:241] [main] Processing chromosome C24960\r\n", "Processing chromosome C24960\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:15,649] [Preprocessor.java:241] [main] Processing chromosome C24962\r\n", "Processing chromosome C24962\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:15,683] [Preprocessor.java:241] [main] Processing chromosome C24964\r\n", "Processing chromosome C24964\r\n", "INFO [2014-03-08 06:13:15,696] [Preprocessor.java:241] [main] Processing chromosome C24966\r\n", "Processing chromosome C24966\r\n", "INFO [2014-03-08 06:13:15,715] [Preprocessor.java:241] [main] Processing chromosome C2497\r\n", "Processing chromosome C2497\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:15,772] [Preprocessor.java:241] [main] Processing chromosome C24974\r\n", "Processing chromosome C24974\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:15,796] [Preprocessor.java:241] [main] Processing chromosome C24984\r\n", "Processing chromosome C24984\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:15,826] [Preprocessor.java:241] [main] Processing chromosome C24994\r\n", "Processing chromosome C24994\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:15,890] [Preprocessor.java:241] [main] Processing chromosome C25\r\n", "Processing chromosome C25\r\n", "INFO [2014-03-08 06:13:15,923] [Preprocessor.java:241] [main] Processing chromosome C25014\r\n", "Processing chromosome C25014\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:15,951] [Preprocessor.java:241] [main] Processing chromosome C25026\r\n", "Processing chromosome C25026\r\n", "INFO [2014-03-08 06:13:15,973] [Preprocessor.java:241] [main] Processing chromosome C25032\r\n", "Processing chromosome C25032\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:15,985] [Preprocessor.java:241] [main] Processing chromosome C25038\r\n", "Processing chromosome C25038\r\n", "INFO [2014-03-08 06:13:15,988] [Preprocessor.java:241] [main] Processing chromosome C25042\r\n", "Processing chromosome C25042\r\n", "INFO [2014-03-08 06:13:15,991] [Preprocessor.java:241] [main] Processing chromosome C25050\r\n", "Processing chromosome C25050\r\n", "INFO [2014-03-08 06:13:15,996] [Preprocessor.java:241] [main] Processing chromosome C25052\r\n", "Processing chromosome C25052\r\n", "INFO [2014-03-08 06:13:16,001] [Preprocessor.java:241] [main] Processing chromosome C25054\r\n", "Processing chromosome C25054\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:16,184] [Preprocessor.java:241] [main] Processing chromosome C25064\r\n", "Processing chromosome C25064\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:16,191] [Preprocessor.java:241] [main] Processing chromosome C25066\r\n", "Processing chromosome C25066\r\n", "INFO [2014-03-08 06:13:16,204] [Preprocessor.java:241] [main] Processing chromosome C25074\r\n", "Processing chromosome C25074\r\n", "INFO [2014-03-08 06:13:16,217] [Preprocessor.java:241] [main] Processing chromosome C25084\r\n", "Processing chromosome C25084\r\n", "INFO [2014-03-08 06:13:16,222] [Preprocessor.java:241] [main] Processing chromosome C25088\r\n", "Processing chromosome C25088\r\n", "INFO [2014-03-08 06:13:16,225] [Preprocessor.java:241] [main] Processing chromosome C25096\r\n", "Processing chromosome C25096\r\n", "INFO [2014-03-08 06:13:16,236] [Preprocessor.java:241] [main] Processing chromosome C25102\r\n", "Processing chromosome C25102\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:16,267] [Preprocessor.java:241] [main] Processing chromosome C25106\r\n", "Processing chromosome C25106\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:16,332] [Preprocessor.java:241] [main] Processing chromosome C25108\r\n", "Processing chromosome C25108\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:16,368] [Preprocessor.java:241] [main] Processing chromosome C25116\r\n", "Processing chromosome C25116\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:16,401] [Preprocessor.java:241] [main] Processing chromosome C25118\r\n", "Processing chromosome C25118\r\n", "INFO [2014-03-08 06:13:16,404] [Preprocessor.java:241] [main] Processing chromosome C25124\r\n", "Processing chromosome C25124\r\n", "INFO [2014-03-08 06:13:16,427] [Preprocessor.java:241] [main] Processing chromosome C25126\r\n", "Processing chromosome C25126\r\n", "INFO [2014-03-08 06:13:16,432] [Preprocessor.java:241] [main] Processing chromosome C25140\r\n", "Processing chromosome C25140\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:16,446] [Preprocessor.java:241] [main] Processing chromosome C25178\r\n", "Processing chromosome C25178\r\n", "INFO [2014-03-08 06:13:16,494] [Preprocessor.java:241] [main] Processing chromosome C25180\r\n", "Processing chromosome C25180\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:16,525] [Preprocessor.java:241] [main] Processing chromosome C25184\r\n", "Processing chromosome C25184\r\n", "INFO [2014-03-08 06:13:16,530] [Preprocessor.java:241] [main] Processing chromosome C25190\r\n", "Processing chromosome C25190\r\n", "INFO [2014-03-08 06:13:16,532] [Preprocessor.java:241] [main] Processing chromosome C25196\r\n", "Processing chromosome C25196\r\n", "INFO [2014-03-08 06:13:16,545] [Preprocessor.java:241] [main] Processing chromosome C25206\r\n", "Processing chromosome C25206\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:16,556] [Preprocessor.java:241] [main] Processing chromosome C25214\r\n", "Processing chromosome C25214\r\n", "INFO [2014-03-08 06:13:16,567] [Preprocessor.java:241] [main] Processing chromosome C25218\r\n", "Processing chromosome C25218\r\n", "INFO [2014-03-08 06:13:16,579] [Preprocessor.java:241] [main] Processing chromosome C25228\r\n", "Processing chromosome C25228\r\n", "INFO [2014-03-08 06:13:16,598] [Preprocessor.java:241] [main] Processing chromosome C25230\r\n", "Processing chromosome C25230\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:16,630] [Preprocessor.java:241] [main] Processing chromosome C25248\r\n", "Processing chromosome C25248\r\n", "INFO [2014-03-08 06:13:16,638] [Preprocessor.java:241] [main] Processing chromosome C25274\r\n", "Processing chromosome C25274\r\n", "INFO [2014-03-08 06:13:16,649] [Preprocessor.java:241] [main] Processing chromosome C25290\r\n", "Processing chromosome C25290\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:16,690] [Preprocessor.java:241] [main] Processing chromosome C25298\r\n", "Processing chromosome C25298\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:16,710] [Preprocessor.java:241] [main] Processing chromosome C25310\r\n", "Processing chromosome C25310\r\n", "INFO [2014-03-08 06:13:16,742] [Preprocessor.java:241] [main] Processing chromosome C25314\r\n", "Processing chromosome C25314\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:16,772] [Preprocessor.java:241] [main] Processing chromosome C25324\r\n", "Processing chromosome C25324\r\n", "INFO [2014-03-08 06:13:16,780] [Preprocessor.java:241] [main] Processing chromosome C25328\r\n", "Processing chromosome C25328\r\n", "INFO [2014-03-08 06:13:16,803] [Preprocessor.java:241] [main] Processing chromosome C2533\r\n", "Processing chromosome C2533\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:16,858] [Preprocessor.java:241] [main] Processing chromosome C25334\r\n", "Processing chromosome C25334\r\n", "INFO [2014-03-08 06:13:16,865] [Preprocessor.java:241] [main] Processing chromosome C25336\r\n", "Processing chromosome C25336\r\n", "INFO [2014-03-08 06:13:16,870] [Preprocessor.java:241] [main] Processing chromosome C25344\r\n", "Processing chromosome C25344\r\n", "INFO [2014-03-08 06:13:16,888] [Preprocessor.java:241] [main] Processing chromosome C25346\r\n", "Processing chromosome C25346\r\n", "INFO [2014-03-08 06:13:16,898] [Preprocessor.java:241] [main] Processing chromosome C25352\r\n", "Processing chromosome C25352\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:16,912] [Preprocessor.java:241] [main] Processing chromosome C25360\r\n", "Processing chromosome C25360\r\n", "INFO [2014-03-08 06:13:16,939] [Preprocessor.java:241] [main] Processing chromosome C25384\r\n", "Processing chromosome C25384\r\n", "INFO [2014-03-08 06:13:16,948] [Preprocessor.java:241] [main] Processing chromosome C25394\r\n", "Processing chromosome C25394\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:16,966] [Preprocessor.java:241] [main] Processing chromosome C25404\r\n", "Processing chromosome C25404\r\n", "INFO [2014-03-08 06:13:16,978] [Preprocessor.java:241] [main] Processing chromosome C2541\r\n", "Processing chromosome C2541\r\n", "INFO [2014-03-08 06:13:17,010] [Preprocessor.java:241] [main] Processing chromosome C25414\r\n", "Processing chromosome C25414\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:17,040] [Preprocessor.java:241] [main] Processing chromosome C25418\r\n", "Processing chromosome C25418\r\n", "INFO [2014-03-08 06:13:17,053] [Preprocessor.java:241] [main] Processing chromosome C25420\r\n", "Processing chromosome C25420\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:17,082] [Preprocessor.java:241] [main] Processing chromosome C25424\r\n", "Processing chromosome C25424\r\n", "INFO [2014-03-08 06:13:17,093] [Preprocessor.java:241] [main] Processing chromosome C2543\r\n", "Processing chromosome C2543\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:17,154] [Preprocessor.java:241] [main] Processing chromosome C25444\r\n", "Processing chromosome C25444\r\n", "INFO [2014-03-08 06:13:17,157] [Preprocessor.java:241] [main] Processing chromosome C25448\r\n", "Processing chromosome C25448\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:17,189] [Preprocessor.java:241] [main] Processing chromosome C2545\r\n", "Processing chromosome C2545\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:17,296] [Preprocessor.java:241] [main] Processing chromosome C25456\r\n", "Processing chromosome C25456\r\n", "INFO [2014-03-08 06:13:17,304] [Preprocessor.java:241] [main] Processing chromosome C25466\r\n", "Processing chromosome C25466\r\n", "INFO [2014-03-08 06:13:17,316] [Preprocessor.java:241] [main] Processing chromosome C25468\r\n", "Processing chromosome C25468\r\n", "INFO [2014-03-08 06:13:17,326] [Preprocessor.java:241] [main] Processing chromosome C25470\r\n", "Processing chromosome C25470\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:17,349] [Preprocessor.java:241] [main] Processing chromosome C25494\r\n", "Processing chromosome C25494\r\n", "INFO [2014-03-08 06:13:17,369] [Preprocessor.java:241] [main] Processing chromosome C25496\r\n", "Processing chromosome C25496\r\n", "INFO [2014-03-08 06:13:17,375] [Preprocessor.java:241] [main] Processing chromosome C25498\r\n", "Processing chromosome C25498\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:17,402] [Preprocessor.java:241] [main] Processing chromosome C25504\r\n", "Processing chromosome C25504\r\n", "INFO [2014-03-08 06:13:17,435] [Preprocessor.java:241] [main] Processing chromosome C25528\r\n", "Processing chromosome C25528\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:17,473] [Preprocessor.java:241] [main] Processing chromosome C25540\r\n", "Processing chromosome C25540\r\n", "INFO [2014-03-08 06:13:17,493] [Preprocessor.java:241] [main] Processing chromosome C25542\r\n", "Processing chromosome C25542\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:17,508] [Preprocessor.java:241] [main] Processing chromosome C25544\r\n", "Processing chromosome C25544\r\n", "INFO [2014-03-08 06:13:17,521] [Preprocessor.java:241] [main] Processing chromosome C25546\r\n", "Processing chromosome C25546\r\n", "INFO [2014-03-08 06:13:17,538] [Preprocessor.java:241] [main] Processing chromosome C25550\r\n", "Processing chromosome C25550\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:17,572] [Preprocessor.java:241] [main] Processing chromosome C25556\r\n", "Processing chromosome C25556\r\n", "INFO [2014-03-08 06:13:17,575] [Preprocessor.java:241] [main] Processing chromosome C25558\r\n", "Processing chromosome C25558\r\n", "INFO [2014-03-08 06:13:17,596] [Preprocessor.java:241] [main] Processing chromosome C25564\r\n", "Processing chromosome C25564\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:17,623] [Preprocessor.java:241] [main] Processing chromosome C25572\r\n", "Processing chromosome C25572\r\n", "INFO [2014-03-08 06:13:17,632] [Preprocessor.java:241] [main] Processing chromosome C25580\r\n", "Processing chromosome C25580\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:17,665] [Preprocessor.java:241] [main] Processing chromosome C25592\r\n", "Processing chromosome C25592\r\n", "INFO [2014-03-08 06:13:17,677] [Preprocessor.java:241] [main] Processing chromosome C25596\r\n", "Processing chromosome C25596\r\n", "INFO [2014-03-08 06:13:17,692] [Preprocessor.java:241] [main] Processing chromosome C25612\r\n", "Processing chromosome C25612\r\n", "INFO [2014-03-08 06:13:17,698] [Preprocessor.java:241] [main] Processing chromosome C25614\r\n", "Processing chromosome C25614\r\n", "INFO [2014-03-08 06:13:17,706] [Preprocessor.java:241] [main] Processing chromosome C25620\r\n", "Processing chromosome C25620\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:17,727] [Preprocessor.java:241] [main] Processing chromosome C25630\r\n", "Processing chromosome C25630\r\n", "INFO [2014-03-08 06:13:17,748] [Preprocessor.java:241] [main] Processing chromosome C25634\r\n", "Processing chromosome C25634\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:17,778] [Preprocessor.java:241] [main] Processing chromosome C25644\r\n", "Processing chromosome C25644\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:17,832] [Preprocessor.java:241] [main] Processing chromosome C25648\r\n", "Processing chromosome C25648\r\n", "INFO [2014-03-08 06:13:17,854] [Preprocessor.java:241] [main] Processing chromosome C25652\r\n", "Processing chromosome C25652\r\n", "INFO [2014-03-08 06:13:17,861] [Preprocessor.java:241] [main] Processing chromosome C25654\r\n", "Processing chromosome C25654\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:17,885] [Preprocessor.java:241] [main] Processing chromosome C25662\r\n", "Processing chromosome C25662\r\n", "INFO [2014-03-08 06:13:17,888] [Preprocessor.java:241] [main] Processing chromosome C25670\r\n", "Processing chromosome C25670\r\n", "INFO [2014-03-08 06:13:17,895] [Preprocessor.java:241] [main] Processing chromosome C25676\r\n", "Processing chromosome C25676\r\n", "INFO [2014-03-08 06:13:17,904] [Preprocessor.java:241] [main] Processing chromosome C25678\r\n", "Processing chromosome C25678\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:17,922] [Preprocessor.java:241] [main] Processing chromosome C25698\r\n", "Processing chromosome C25698\r\n", "INFO [2014-03-08 06:13:17,954] [Preprocessor.java:241] [main] Processing chromosome C25706\r\n", "Processing chromosome C25706\r\n", "INFO [2014-03-08 06:13:17,963] [Preprocessor.java:241] [main] Processing chromosome C25708\r\n", "Processing chromosome C25708\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:17,974] [Preprocessor.java:241] [main] Processing chromosome C25722\r\n", "Processing chromosome C25722\r\n", "INFO [2014-03-08 06:13:17,999] [Preprocessor.java:241] [main] Processing chromosome C25730\r\n", "Processing chromosome C25730\r\n", "INFO [2014-03-08 06:13:18,003] [Preprocessor.java:241] [main] Processing chromosome C25734\r\n", "Processing chromosome C25734\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:18,031] [Preprocessor.java:241] [main] Processing chromosome C25740\r\n", "Processing chromosome C25740\r\n", "INFO [2014-03-08 06:13:18,058] [Preprocessor.java:241] [main] Processing chromosome C25744\r\n", "Processing chromosome C25744\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:18,092] [Preprocessor.java:241] [main] Processing chromosome C25748\r\n", "Processing chromosome C25748\r\n", "INFO [2014-03-08 06:13:18,098] [Preprocessor.java:241] [main] Processing chromosome C25752\r\n", "Processing chromosome C25752\r\n", "INFO [2014-03-08 06:13:18,109] [Preprocessor.java:241] [main] Processing chromosome C25756\r\n", "Processing chromosome C25756\r\n", "INFO [2014-03-08 06:13:18,123] [Preprocessor.java:241] [main] Processing chromosome C25758\r\n", "Processing chromosome C25758\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:18,149] [Preprocessor.java:241] [main] Processing chromosome C25762\r\n", "Processing chromosome C25762\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:18,179] [Preprocessor.java:241] [main] Processing chromosome C25766\r\n", "Processing chromosome C25766\r\n", "INFO [2014-03-08 06:13:18,183] [Preprocessor.java:241] [main] Processing chromosome C25778\r\n", "Processing chromosome C25778\r\n", "INFO [2014-03-08 06:13:18,192] [Preprocessor.java:241] [main] Processing chromosome C25780\r\n", "Processing chromosome C25780\r\n", "INFO [2014-03-08 06:13:18,196] [Preprocessor.java:241] [main] Processing chromosome C25792\r\n", "Processing chromosome C25792\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:18,233] [Preprocessor.java:241] [main] Processing chromosome C25804\r\n", "Processing chromosome C25804\r\n", "INFO [2014-03-08 06:13:18,269] [Preprocessor.java:241] [main] Processing chromosome C25818\r\n", "Processing chromosome C25818\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:18,290] [Preprocessor.java:241] [main] Processing chromosome C25820\r\n", "Processing chromosome C25820\r\n", "INFO [2014-03-08 06:13:18,293] [Preprocessor.java:241] [main] Processing chromosome C25822\r\n", "Processing chromosome C25822\r\n", "INFO [2014-03-08 06:13:18,317] [Preprocessor.java:241] [main] Processing chromosome C25826\r\n", "Processing chromosome C25826\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:18,332] [Preprocessor.java:241] [main] Processing chromosome C25828\r\n", "Processing chromosome C25828\r\n", "INFO [2014-03-08 06:13:18,379] [Preprocessor.java:241] [main] Processing chromosome C2583\r\n", "Processing chromosome C2583\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:18,411] [Preprocessor.java:241] [main] Processing chromosome C25834\r\n", "Processing chromosome C25834\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:18,472] [Preprocessor.java:241] [main] Processing chromosome C25838\r\n", "Processing chromosome C25838\r\n", "INFO [2014-03-08 06:13:18,480] [Preprocessor.java:241] [main] Processing chromosome C25858\r\n", "Processing chromosome C25858\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:18,495] [Preprocessor.java:241] [main] Processing chromosome C25860\r\n", "Processing chromosome C25860\r\n", "INFO [2014-03-08 06:13:18,498] [Preprocessor.java:241] [main] Processing chromosome C25864\r\n", "Processing chromosome C25864\r\n", "INFO [2014-03-08 06:13:18,520] [Preprocessor.java:241] [main] Processing chromosome C25866\r\n", "Processing chromosome C25866\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:18,542] [Preprocessor.java:241] [main] Processing chromosome C25876\r\n", "Processing chromosome C25876\r\n", "INFO [2014-03-08 06:13:18,586] [Preprocessor.java:241] [main] Processing chromosome C25882\r\n", "Processing chromosome C25882\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:18,590] [Preprocessor.java:241] [main] Processing chromosome C25896\r\n", "Processing chromosome C25896\r\n", "INFO [2014-03-08 06:13:18,630] [Preprocessor.java:241] [main] Processing chromosome C25898\r\n", "Processing chromosome C25898\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:18,654] [Preprocessor.java:241] [main] Processing chromosome C25900\r\n", "Processing chromosome C25900\r\n", "INFO [2014-03-08 06:13:18,659] [Preprocessor.java:241] [main] Processing chromosome C25912\r\n", "Processing chromosome C25912\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:18,693] [Preprocessor.java:241] [main] Processing chromosome C25928\r\n", "Processing chromosome C25928\r\n", "INFO [2014-03-08 06:13:18,720] [Preprocessor.java:241] [main] Processing chromosome C25930\r\n", "Processing chromosome C25930\r\n", "INFO [2014-03-08 06:13:18,730] [Preprocessor.java:241] [main] Processing chromosome C25932\r\n", "Processing chromosome C25932\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:18,773] [Preprocessor.java:241] [main] Processing chromosome C25940\r\n", "Processing chromosome C25940\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:18,823] [Preprocessor.java:241] [main] Processing chromosome C25946\r\n", "Processing chromosome C25946\r\n", "INFO [2014-03-08 06:13:18,831] [Preprocessor.java:241] [main] Processing chromosome C25954\r\n", "Processing chromosome C25954\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:18,851] [Preprocessor.java:241] [main] Processing chromosome C25962\r\n", "Processing chromosome C25962\r\n", "INFO [2014-03-08 06:13:18,871] [Preprocessor.java:241] [main] Processing chromosome C25966\r\n", "Processing chromosome C25966\r\n", "INFO [2014-03-08 06:13:18,890] [Preprocessor.java:241] [main] Processing chromosome C25968\r\n", "Processing chromosome C25968\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:18,940] [Preprocessor.java:241] [main] Processing chromosome C25970\r\n", "Processing chromosome C25970\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:18,957] [Preprocessor.java:241] [main] Processing chromosome C25972\r\n", "Processing chromosome C25972\r\n", "INFO [2014-03-08 06:13:18,969] [Preprocessor.java:241] [main] Processing chromosome C25980\r\n", "Processing chromosome C25980\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:19,025] [Preprocessor.java:241] [main] Processing chromosome C25990\r\n", "Processing chromosome C25990\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:19,057] [Preprocessor.java:241] [main] Processing chromosome C25998\r\n", "Processing chromosome C25998\r\n", "INFO [2014-03-08 06:13:19,095] [Preprocessor.java:241] [main] Processing chromosome C26002\r\n", "Processing chromosome C26002\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:19,119] [Preprocessor.java:241] [main] Processing chromosome C26004\r\n", "Processing chromosome C26004\r\n", "INFO [2014-03-08 06:13:19,156] [Preprocessor.java:241] [main] Processing chromosome C26010\r\n", "Processing chromosome C26010\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:19,165] [Preprocessor.java:241] [main] Processing chromosome C26018\r\n", "Processing chromosome C26018\r\n", "INFO [2014-03-08 06:13:19,179] [Preprocessor.java:241] [main] Processing chromosome C26032\r\n", "Processing chromosome C26032\r\n", "INFO [2014-03-08 06:13:19,198] [Preprocessor.java:241] [main] Processing chromosome C26040\r\n", "Processing chromosome C26040\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:19,221] [Preprocessor.java:241] [main] Processing chromosome C26054\r\n", "Processing chromosome C26054\r\n", "INFO [2014-03-08 06:13:19,239] [Preprocessor.java:241] [main] Processing chromosome C26066\r\n", "Processing chromosome C26066\r\n", "INFO [2014-03-08 06:13:19,251] [Preprocessor.java:241] [main] Processing chromosome C26070\r\n", "Processing chromosome C26070\r\n", "INFO [2014-03-08 06:13:19,257] [Preprocessor.java:241] [main] Processing chromosome C26078\r\n", "Processing chromosome C26078\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:19,286] [Preprocessor.java:241] [main] Processing chromosome C26082\r\n", "Processing chromosome C26082\r\n", "INFO [2014-03-08 06:13:19,311] [Preprocessor.java:241] [main] Processing chromosome C26084\r\n", "Processing chromosome C26084\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:19,336] [Preprocessor.java:241] [main] Processing chromosome C26088\r\n", "Processing chromosome C26088\r\n", "INFO [2014-03-08 06:13:19,343] [Preprocessor.java:241] [main] Processing chromosome C26094\r\n", "Processing chromosome C26094\r\n", "INFO [2014-03-08 06:13:19,345] [Preprocessor.java:241] [main] Processing chromosome C26096\r\n", "Processing chromosome C26096\r\n", "INFO [2014-03-08 06:13:19,353] [Preprocessor.java:241] [main] Processing chromosome C26102\r\n", "Processing chromosome C26102\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:19,390] [Preprocessor.java:241] [main] Processing chromosome C26108\r\n", "Processing chromosome C26108\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:19,415] [Preprocessor.java:241] [main] Processing chromosome C26118\r\n", "Processing chromosome C26118\r\n", "INFO [2014-03-08 06:13:19,443] [Preprocessor.java:241] [main] Processing chromosome C26122\r\n", "Processing chromosome C26122\r\n", "INFO [2014-03-08 06:13:19,446] [Preprocessor.java:241] [main] Processing chromosome C26128\r\n", "Processing chromosome C26128\r\n", "INFO [2014-03-08 06:13:19,456] [Preprocessor.java:241] [main] Processing chromosome C26134\r\n", "Processing chromosome C26134\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:19,583] [Preprocessor.java:241] [main] Processing chromosome C26140\r\n", "Processing chromosome C26140\r\n", "INFO [2014-03-08 06:13:19,599] [Preprocessor.java:241] [main] Processing chromosome C26148\r\n", "Processing chromosome C26148\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:19,633] [Preprocessor.java:241] [main] Processing chromosome C26150\r\n", "Processing chromosome C26150\r\n", "INFO [2014-03-08 06:13:19,646] [Preprocessor.java:241] [main] Processing chromosome C26152\r\n", "Processing chromosome C26152\r\n", "INFO [2014-03-08 06:13:19,649] [Preprocessor.java:241] [main] Processing chromosome C26154\r\n", "Processing chromosome C26154\r\n", "INFO [2014-03-08 06:13:19,652] [Preprocessor.java:241] [main] Processing chromosome C26156\r\n", "Processing chromosome C26156\r\n", "INFO [2014-03-08 06:13:19,666] [Preprocessor.java:241] [main] Processing chromosome C26168\r\n", "Processing chromosome C26168\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:19,710] [Preprocessor.java:241] [main] Processing chromosome C26170\r\n", "Processing chromosome C26170\r\n", "INFO [2014-03-08 06:13:19,715] [Preprocessor.java:241] [main] Processing chromosome C26174\r\n", "Processing chromosome C26174\r\n", "INFO [2014-03-08 06:13:19,718] [Preprocessor.java:241] [main] Processing chromosome C26180\r\n", "Processing chromosome C26180\r\n", "INFO [2014-03-08 06:13:19,727] [Preprocessor.java:241] [main] Processing chromosome C26184\r\n", "Processing chromosome C26184\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:19,744] [Preprocessor.java:241] [main] Processing chromosome C26190\r\n", "Processing chromosome C26190\r\n", "INFO [2014-03-08 06:13:19,753] [Preprocessor.java:241] [main] Processing chromosome C26192\r\n", "Processing chromosome C26192\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:19,798] [Preprocessor.java:241] [main] Processing chromosome C26196\r\n", "Processing chromosome C26196\r\n", "INFO [2014-03-08 06:13:19,812] [Preprocessor.java:241] [main] Processing chromosome C26198\r\n", "Processing chromosome C26198\r\n", "INFO [2014-03-08 06:13:19,832] [Preprocessor.java:241] [main] Processing chromosome C26204\r\n", "Processing chromosome C26204\r\n", "INFO [2014-03-08 06:13:19,836] [Preprocessor.java:241] [main] Processing chromosome C26206\r\n", "Processing chromosome C26206\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:19,852] [Preprocessor.java:241] [main] Processing chromosome C26212\r\n", "Processing chromosome C26212\r\n", "INFO [2014-03-08 06:13:19,881] [Preprocessor.java:241] [main] Processing chromosome C26226\r\n", "Processing chromosome C26226\r\n", "INFO [2014-03-08 06:13:19,890] [Preprocessor.java:241] [main] Processing chromosome C26228\r\n", "Processing chromosome C26228\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:19,905] [Preprocessor.java:241] [main] Processing chromosome C26230\r\n", "Processing chromosome C26230\r\n", "INFO [2014-03-08 06:13:19,921] [Preprocessor.java:241] [main] Processing chromosome C26236\r\n", "Processing chromosome C26236\r\n", "INFO [2014-03-08 06:13:19,931] [Preprocessor.java:241] [main] Processing chromosome C26238\r\n", "Processing chromosome C26238\r\n", "INFO [2014-03-08 06:13:19,940] [Preprocessor.java:241] [main] Processing chromosome C26240\r\n", "Processing chromosome C26240\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:19,959] [Preprocessor.java:241] [main] Processing chromosome C26244\r\n", "Processing chromosome C26244\r\n", "INFO [2014-03-08 06:13:19,987] [Preprocessor.java:241] [main] Processing chromosome C26246\r\n", "Processing chromosome C26246\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:20,005] [Preprocessor.java:241] [main] Processing chromosome C26256\r\n", "Processing chromosome C26256\r\n", "INFO [2014-03-08 06:13:20,014] [Preprocessor.java:241] [main] Processing chromosome C26262\r\n", "Processing chromosome C26262\r\n", "INFO [2014-03-08 06:13:20,017] [Preprocessor.java:241] [main] Processing chromosome C26268\r\n", "Processing chromosome C26268\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:20,057] [Preprocessor.java:241] [main] Processing chromosome C26276\r\n", "Processing chromosome C26276\r\n", "INFO [2014-03-08 06:13:20,087] [Preprocessor.java:241] [main] Processing chromosome C26278\r\n", "Processing chromosome C26278\r\n", "INFO [2014-03-08 06:13:20,091] [Preprocessor.java:241] [main] Processing chromosome C26292\r\n", "Processing chromosome C26292\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:20,135] [Preprocessor.java:241] [main] Processing chromosome C26302\r\n", "Processing chromosome C26302\r\n", "INFO [2014-03-08 06:13:20,138] [Preprocessor.java:241] [main] Processing chromosome C26306\r\n", "Processing chromosome C26306\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:20,173] [Preprocessor.java:241] [main] Processing chromosome C26312\r\n", "Processing chromosome C26312\r\n", "INFO [2014-03-08 06:13:20,185] [Preprocessor.java:241] [main] Processing chromosome C26318\r\n", "Processing chromosome C26318\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:20,205] [Preprocessor.java:241] [main] Processing chromosome C26320\r\n", "Processing chromosome C26320\r\n", "INFO [2014-03-08 06:13:20,218] [Preprocessor.java:241] [main] Processing chromosome C26336\r\n", "Processing chromosome C26336\r\n", "INFO [2014-03-08 06:13:20,232] [Preprocessor.java:241] [main] Processing chromosome C26338\r\n", "Processing chromosome C26338\r\n", "INFO [2014-03-08 06:13:20,236] [Preprocessor.java:241] [main] Processing chromosome C26342\r\n", "Processing chromosome C26342\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:20,255] [Preprocessor.java:241] [main] Processing chromosome C26344\r\n", "Processing chromosome C26344\r\n", "INFO [2014-03-08 06:13:20,259] [Preprocessor.java:241] [main] Processing chromosome C26352\r\n", "Processing chromosome C26352\r\n", "INFO [2014-03-08 06:13:20,261] [Preprocessor.java:241] [main] Processing chromosome C26354\r\n", "Processing chromosome C26354\r\n", "INFO [2014-03-08 06:13:20,278] [Preprocessor.java:241] [main] Processing chromosome C26356\r\n", "Processing chromosome C26356\r\n", "INFO [2014-03-08 06:13:20,281] [Preprocessor.java:241] [main] Processing chromosome C26370\r\n", "Processing chromosome C26370\r\n", "INFO [2014-03-08 06:13:20,288] [Preprocessor.java:241] [main] Processing chromosome C26372\r\n", "Processing chromosome C26372\r\n", "INFO [2014-03-08 06:13:20,294] [Preprocessor.java:241] [main] Processing chromosome C26374\r\n", "Processing chromosome C26374\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:20,304] [Preprocessor.java:241] [main] Processing chromosome C26384\r\n", "Processing chromosome C26384\r\n", "INFO [2014-03-08 06:13:20,322] [Preprocessor.java:241] [main] Processing chromosome C26390\r\n", "Processing chromosome C26390\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:20,356] [Preprocessor.java:241] [main] Processing chromosome C26394\r\n", "Processing chromosome C26394\r\n", "INFO [2014-03-08 06:13:20,363] [Preprocessor.java:241] [main] Processing chromosome C26402\r\n", "Processing chromosome C26402\r\n", "INFO [2014-03-08 06:13:20,377] [Preprocessor.java:241] [main] Processing chromosome C26416\r\n", "Processing chromosome C26416\r\n", "INFO [2014-03-08 06:13:20,387] [Preprocessor.java:241] [main] Processing chromosome C26422\r\n", "Processing chromosome C26422\r\n", "INFO [2014-03-08 06:13:20,402] [Preprocessor.java:241] [main] Processing chromosome C26426\r\n", "Processing chromosome C26426\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:20,414] [Preprocessor.java:241] [main] Processing chromosome C26430\r\n", "Processing chromosome C26430\r\n", "INFO [2014-03-08 06:13:20,422] [Preprocessor.java:241] [main] Processing chromosome C26440\r\n", "Processing chromosome C26440\r\n", "INFO [2014-03-08 06:13:20,430] [Preprocessor.java:241] [main] Processing chromosome C26448\r\n", "Processing chromosome C26448\r\n", "INFO [2014-03-08 06:13:20,444] [Preprocessor.java:241] [main] Processing chromosome C26452\r\n", "Processing chromosome C26452\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:20,465] [Preprocessor.java:241] [main] Processing chromosome C26454\r\n", "Processing chromosome C26454\r\n", "INFO [2014-03-08 06:13:20,508] [Preprocessor.java:241] [main] Processing chromosome C26458\r\n", "Processing chromosome C26458\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:20,523] [Preprocessor.java:241] [main] Processing chromosome C26460\r\n", "Processing chromosome C26460\r\n", "INFO [2014-03-08 06:13:20,538] [Preprocessor.java:241] [main] Processing chromosome C26466\r\n", "Processing chromosome C26466\r\n", "INFO [2014-03-08 06:13:20,557] [Preprocessor.java:241] [main] Processing chromosome C26468\r\n", "Processing chromosome C26468\r\n", "INFO [2014-03-08 06:13:20,560] [Preprocessor.java:241] [main] Processing chromosome C26472\r\n", "Processing chromosome C26472\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:20,569] [Preprocessor.java:241] [main] Processing chromosome C26474\r\n", "Processing chromosome C26474\r\n", "INFO [2014-03-08 06:13:20,581] [Preprocessor.java:241] [main] Processing chromosome C26482\r\n", "Processing chromosome C26482\r\n", "INFO [2014-03-08 06:13:20,590] [Preprocessor.java:241] [main] Processing chromosome C26486\r\n", "Processing chromosome C26486\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:20,616] [Preprocessor.java:241] [main] Processing chromosome C26492\r\n", "Processing chromosome C26492\r\n", "INFO [2014-03-08 06:13:20,637] [Preprocessor.java:241] [main] Processing chromosome C26500\r\n", "Processing chromosome C26500\r\n", "INFO [2014-03-08 06:13:20,660] [Preprocessor.java:241] [main] Processing chromosome C26506\r\n", "Processing chromosome C26506\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:20,697] [Preprocessor.java:241] [main] Processing chromosome C26508\r\n", "Processing chromosome C26508\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:20,723] [Preprocessor.java:241] [main] Processing chromosome C26516\r\n", "Processing chromosome C26516\r\n", "INFO [2014-03-08 06:13:20,764] [Preprocessor.java:241] [main] Processing chromosome C26518\r\n", "Processing chromosome C26518\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:20,772] [Preprocessor.java:241] [main] Processing chromosome C26522\r\n", "Processing chromosome C26522\r\n", "INFO [2014-03-08 06:13:20,807] [Preprocessor.java:241] [main] Processing chromosome C26526\r\n", "Processing chromosome C26526\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:20,830] [Preprocessor.java:241] [main] Processing chromosome C26532\r\n", "Processing chromosome C26532\r\n", "INFO [2014-03-08 06:13:20,853] [Preprocessor.java:241] [main] Processing chromosome C26534\r\n", "Processing chromosome C26534\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:20,879] [Preprocessor.java:241] [main] Processing chromosome C26536\r\n", "Processing chromosome C26536\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:20,935] [Preprocessor.java:241] [main] Processing chromosome C26550\r\n", "Processing chromosome C26550\r\n", "INFO [2014-03-08 06:13:20,945] [Preprocessor.java:241] [main] Processing chromosome C26552\r\n", "Processing chromosome C26552\r\n", "INFO [2014-03-08 06:13:20,950] [Preprocessor.java:241] [main] Processing chromosome C26556\r\n", "Processing chromosome C26556\r\n", "INFO [2014-03-08 06:13:20,955] [Preprocessor.java:241] [main] Processing chromosome C26562\r\n", "Processing chromosome C26562\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:20,978] [Preprocessor.java:241] [main] Processing chromosome C26566\r\n", "Processing chromosome C26566\r\n", "INFO [2014-03-08 06:13:20,999] [Preprocessor.java:241] [main] Processing chromosome C26568\r\n", "Processing chromosome C26568\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:21,038] [Preprocessor.java:241] [main] Processing chromosome C26570\r\n", "Processing chromosome C26570\r\n", "INFO [2014-03-08 06:13:21,051] [Preprocessor.java:241] [main] Processing chromosome C26574\r\n", "Processing chromosome C26574\r\n", "INFO [2014-03-08 06:13:21,054] [Preprocessor.java:241] [main] Processing chromosome C26578\r\n", "Processing chromosome C26578\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:21,097] [Preprocessor.java:241] [main] Processing chromosome C26582\r\n", "Processing chromosome C26582\r\n", "INFO [2014-03-08 06:13:21,105] [Preprocessor.java:241] [main] Processing chromosome C26584\r\n", "Processing chromosome C26584\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:21,141] [Preprocessor.java:241] [main] Processing chromosome C26602\r\n", "Processing chromosome C26602\r\n", "INFO [2014-03-08 06:13:21,156] [Preprocessor.java:241] [main] Processing chromosome C26606\r\n", "Processing chromosome C26606\r\n", "INFO [2014-03-08 06:13:21,161] [Preprocessor.java:241] [main] Processing chromosome C26612\r\n", "Processing chromosome C26612\r\n", "INFO [2014-03-08 06:13:21,181] [Preprocessor.java:241] [main] Processing chromosome C26614\r\n", "Processing chromosome C26614\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:21,203] [Preprocessor.java:241] [main] Processing chromosome C26620\r\n", "Processing chromosome C26620\r\n", "INFO [2014-03-08 06:13:21,208] [Preprocessor.java:241] [main] Processing chromosome C26624\r\n", "Processing chromosome C26624\r\n", "INFO [2014-03-08 06:13:21,230] [Preprocessor.java:241] [main] Processing chromosome C26628\r\n", "Processing chromosome C26628\r\n", "INFO [2014-03-08 06:13:21,236] [Preprocessor.java:241] [main] Processing chromosome C26640\r\n", "Processing chromosome C26640\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:21,251] [Preprocessor.java:241] [main] Processing chromosome C26646\r\n", "Processing chromosome C26646\r\n", "INFO [2014-03-08 06:13:21,265] [Preprocessor.java:241] [main] Processing chromosome C26654\r\n", "Processing chromosome C26654\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:21,293] [Preprocessor.java:241] [main] Processing chromosome C26660\r\n", "Processing chromosome C26660\r\n", "INFO [2014-03-08 06:13:21,298] [Preprocessor.java:241] [main] Processing chromosome C26666\r\n", "Processing chromosome C26666\r\n", "INFO [2014-03-08 06:13:21,307] [Preprocessor.java:241] [main] Processing chromosome C26674\r\n", "Processing chromosome C26674\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:21,344] [Preprocessor.java:241] [main] Processing chromosome C26684\r\n", "Processing chromosome C26684\r\n", "INFO [2014-03-08 06:13:21,366] [Preprocessor.java:241] [main] Processing chromosome C26688\r\n", "Processing chromosome C26688\r\n", "INFO [2014-03-08 06:13:21,384] [Preprocessor.java:241] [main] Processing chromosome C26692\r\n", "Processing chromosome C26692\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:21,396] [Preprocessor.java:241] [main] Processing chromosome C26708\r\n", "Processing chromosome C26708\r\n", "INFO [2014-03-08 06:13:21,407] [Preprocessor.java:241] [main] Processing chromosome C26712\r\n", "Processing chromosome C26712\r\n", "INFO [2014-03-08 06:13:21,432] [Preprocessor.java:241] [main] Processing chromosome C26722\r\n", "Processing chromosome C26722\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:21,447] [Preprocessor.java:241] [main] Processing chromosome C26726\r\n", "Processing chromosome C26726\r\n", "INFO [2014-03-08 06:13:21,457] [Preprocessor.java:241] [main] Processing chromosome C26728\r\n", "Processing chromosome C26728\r\n", "INFO [2014-03-08 06:13:21,468] [Preprocessor.java:241] [main] Processing chromosome C26738\r\n", "Processing chromosome C26738\r\n", "INFO [2014-03-08 06:13:21,484] [Preprocessor.java:241] [main] Processing chromosome C26740\r\n", "Processing chromosome C26740\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:21,504] [Preprocessor.java:241] [main] Processing chromosome C26742\r\n", "Processing chromosome C26742\r\n", "INFO [2014-03-08 06:13:21,535] [Preprocessor.java:241] [main] Processing chromosome C26762\r\n", "Processing chromosome C26762\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:21,550] [Preprocessor.java:241] [main] Processing chromosome C26774\r\n", "Processing chromosome C26774\r\n", "INFO [2014-03-08 06:13:21,554] [Preprocessor.java:241] [main] Processing chromosome C26784\r\n", "Processing chromosome C26784\r\n", "INFO [2014-03-08 06:13:21,556] [Preprocessor.java:241] [main] Processing chromosome C26812\r\n", "Processing chromosome C26812\r\n", "INFO [2014-03-08 06:13:21,595] [Preprocessor.java:241] [main] Processing chromosome C26820\r\n", "Processing chromosome C26820\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:21,640] [Preprocessor.java:241] [main] Processing chromosome C26824\r\n", "Processing chromosome C26824\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:21,660] [Preprocessor.java:241] [main] Processing chromosome C26828\r\n", "Processing chromosome C26828\r\n", "INFO [2014-03-08 06:13:21,668] [Preprocessor.java:241] [main] Processing chromosome C26838\r\n", "Processing chromosome C26838\r\n", "INFO [2014-03-08 06:13:21,689] [Preprocessor.java:241] [main] Processing chromosome C26844\r\n", "Processing chromosome C26844\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:21,715] [Preprocessor.java:241] [main] Processing chromosome C26852\r\n", "Processing chromosome C26852\r\n", "INFO [2014-03-08 06:13:21,724] [Preprocessor.java:241] [main] Processing chromosome C26862\r\n", "Processing chromosome C26862\r\n", "INFO [2014-03-08 06:13:21,745] [Preprocessor.java:241] [main] Processing chromosome C26866\r\n", "Processing chromosome C26866\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:21,771] [Preprocessor.java:241] [main] Processing chromosome C26872\r\n", "Processing chromosome C26872\r\n", "INFO [2014-03-08 06:13:21,790] [Preprocessor.java:241] [main] Processing chromosome C26878\r\n", "Processing chromosome C26878\r\n", "INFO [2014-03-08 06:13:21,796] [Preprocessor.java:241] [main] Processing chromosome C26888\r\n", "Processing chromosome C26888\r\n", "INFO [2014-03-08 06:13:21,805] [Preprocessor.java:241] [main] Processing chromosome C26890\r\n", "Processing chromosome C26890\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:21,827] [Preprocessor.java:241] [main] Processing chromosome C26900\r\n", "Processing chromosome C26900\r\n", "INFO [2014-03-08 06:13:21,833] [Preprocessor.java:241] [main] Processing chromosome C26918\r\n", "Processing chromosome C26918\r\n", "INFO [2014-03-08 06:13:21,845] [Preprocessor.java:241] [main] Processing chromosome C26920\r\n", "Processing chromosome C26920\r\n", "INFO [2014-03-08 06:13:21,853] [Preprocessor.java:241] [main] Processing chromosome C26932\r\n", "Processing chromosome C26932\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:21,868] [Preprocessor.java:241] [main] Processing chromosome C26934\r\n", "Processing chromosome C26934\r\n", "INFO [2014-03-08 06:13:21,886] [Preprocessor.java:241] [main] Processing chromosome C26936\r\n", "Processing chromosome C26936\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:21,944] [Preprocessor.java:241] [main] Processing chromosome C26938\r\n", "Processing chromosome C26938\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:21,982] [Preprocessor.java:241] [main] Processing chromosome C26942\r\n", "Processing chromosome C26942\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:22,024] [Preprocessor.java:241] [main] Processing chromosome C26948\r\n", "Processing chromosome C26948\r\n", "INFO [2014-03-08 06:13:22,044] [Preprocessor.java:241] [main] Processing chromosome C26958\r\n", "Processing chromosome C26958\r\n", "INFO [2014-03-08 06:13:22,047] [Preprocessor.java:241] [main] Processing chromosome C26960\r\n", "Processing chromosome C26960\r\n", "INFO [2014-03-08 06:13:22,053] [Preprocessor.java:241] [main] Processing chromosome C26966\r\n", "Processing chromosome C26966\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:22,112] [Preprocessor.java:241] [main] Processing chromosome C26976\r\n", "Processing chromosome C26976\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:22,140] [Preprocessor.java:241] [main] Processing chromosome C26978\r\n", "Processing chromosome C26978\r\n", "INFO [2014-03-08 06:13:22,149] [Preprocessor.java:241] [main] Processing chromosome C26982\r\n", "Processing chromosome C26982\r\n", "INFO [2014-03-08 06:13:22,163] [Preprocessor.java:241] [main] Processing chromosome C26986\r\n", "Processing chromosome C26986\r\n", "INFO [2014-03-08 06:13:22,166] [Preprocessor.java:241] [main] Processing chromosome C26992\r\n", "Processing chromosome C26992\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:22,187] [Preprocessor.java:241] [main] Processing chromosome C26998\r\n", "Processing chromosome C26998\r\n", "INFO [2014-03-08 06:13:22,192] [Preprocessor.java:241] [main] Processing chromosome C27\r\n", "Processing chromosome C27\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:22,222] [Preprocessor.java:241] [main] Processing chromosome C2701\r\n", "Processing chromosome C2701\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:22,272] [Preprocessor.java:241] [main] Processing chromosome C27016\r\n", "Processing chromosome C27016\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:22,350] [Preprocessor.java:241] [main] Processing chromosome C27020\r\n", "Processing chromosome C27020\r\n", "INFO [2014-03-08 06:13:22,366] [Preprocessor.java:241] [main] Processing chromosome C27026\r\n", "Processing chromosome C27026\r\n", "INFO [2014-03-08 06:13:22,377] [Preprocessor.java:241] [main] Processing chromosome C27038\r\n", "Processing chromosome C27038\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:22,388] [Preprocessor.java:241] [main] Processing chromosome C27052\r\n", "Processing chromosome C27052\r\n", "INFO [2014-03-08 06:13:22,392] [Preprocessor.java:241] [main] Processing chromosome C27054\r\n", "Processing chromosome C27054\r\n", "INFO [2014-03-08 06:13:22,402] [Preprocessor.java:241] [main] Processing chromosome C27058\r\n", "Processing chromosome C27058\r\n", "INFO [2014-03-08 06:13:22,404] [Preprocessor.java:241] [main] Processing chromosome C27066\r\n", "Processing chromosome C27066\r\n", "INFO [2014-03-08 06:13:22,427] [Preprocessor.java:241] [main] Processing chromosome C27086\r\n", "Processing chromosome C27086\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:22,436] [Preprocessor.java:241] [main] Processing chromosome C27092\r\n", "Processing chromosome C27092\r\n", "INFO [2014-03-08 06:13:22,443] [Preprocessor.java:241] [main] Processing chromosome C27100\r\n", "Processing chromosome C27100\r\n", "INFO [2014-03-08 06:13:22,449] [Preprocessor.java:241] [main] Processing chromosome C27102\r\n", "Processing chromosome C27102\r\n", "INFO [2014-03-08 06:13:22,451] [Preprocessor.java:241] [main] Processing chromosome C27106\r\n", "Processing chromosome C27106\r\n", "INFO [2014-03-08 06:13:22,463] [Preprocessor.java:241] [main] Processing chromosome C27116\r\n", "Processing chromosome C27116\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:22,487] [Preprocessor.java:241] [main] Processing chromosome C27118\r\n", "Processing chromosome C27118\r\n", "INFO [2014-03-08 06:13:22,503] [Preprocessor.java:241] [main] Processing chromosome C27132\r\n", "Processing chromosome C27132\r\n", "INFO [2014-03-08 06:13:22,521] [Preprocessor.java:241] [main] Processing chromosome C27154\r\n", "Processing chromosome C27154\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:22,534] [Preprocessor.java:241] [main] Processing chromosome C27158\r\n", "Processing chromosome C27158\r\n", "INFO [2014-03-08 06:13:22,542] [Preprocessor.java:241] [main] Processing chromosome C27160\r\n", "Processing chromosome C27160\r\n", "INFO [2014-03-08 06:13:22,551] [Preprocessor.java:241] [main] Processing chromosome C27162\r\n", "Processing chromosome C27162\r\n", "INFO [2014-03-08 06:13:22,574] [Preprocessor.java:241] [main] Processing chromosome C27168\r\n", "Processing chromosome C27168\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:22,607] [Preprocessor.java:241] [main] Processing chromosome C27176\r\n", "Processing chromosome C27176\r\n", "INFO [2014-03-08 06:13:22,627] [Preprocessor.java:241] [main] Processing chromosome C27178\r\n", "Processing chromosome C27178\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:22,644] [Preprocessor.java:241] [main] Processing chromosome C27196\r\n", "Processing chromosome C27196\r\n", "INFO [2014-03-08 06:13:22,652] [Preprocessor.java:241] [main] Processing chromosome C27210\r\n", "Processing chromosome C27210\r\n", "INFO [2014-03-08 06:13:22,667] [Preprocessor.java:241] [main] Processing chromosome C27218\r\n", "Processing chromosome C27218\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:22,696] [Preprocessor.java:241] [main] Processing chromosome C27230\r\n", "Processing chromosome C27230\r\n", "INFO [2014-03-08 06:13:22,711] [Preprocessor.java:241] [main] Processing chromosome C27242\r\n", "Processing chromosome C27242\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:22,743] [Preprocessor.java:241] [main] Processing chromosome C27244\r\n", "Processing chromosome C27244\r\n", "INFO [2014-03-08 06:13:22,761] [Preprocessor.java:241] [main] Processing chromosome C27258\r\n", "Processing chromosome C27258\r\n", "INFO [2014-03-08 06:13:22,766] [Preprocessor.java:241] [main] Processing chromosome C27268\r\n", "Processing chromosome C27268\r\n", "INFO [2014-03-08 06:13:22,778] [Preprocessor.java:241] [main] Processing chromosome C2727\r\n", "Processing chromosome C2727\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:22,809] [Preprocessor.java:241] [main] Processing chromosome C27272\r\n", "Processing chromosome C27272\r\n", "INFO [2014-03-08 06:13:22,834] [Preprocessor.java:241] [main] Processing chromosome C27276\r\n", "Processing chromosome C27276\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:22,870] [Preprocessor.java:241] [main] Processing chromosome C27282\r\n", "Processing chromosome C27282\r\n", "INFO [2014-03-08 06:13:22,884] [Preprocessor.java:241] [main] Processing chromosome C27284\r\n", "Processing chromosome C27284\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:22,902] [Preprocessor.java:241] [main] Processing chromosome C27296\r\n", "Processing chromosome C27296\r\n", "INFO [2014-03-08 06:13:22,911] [Preprocessor.java:241] [main] Processing chromosome C27304\r\n", "Processing chromosome C27304\r\n", "INFO [2014-03-08 06:13:22,917] [Preprocessor.java:241] [main] Processing chromosome C27310\r\n", "Processing chromosome C27310\r\n", "INFO [2014-03-08 06:13:22,935] [Preprocessor.java:241] [main] Processing chromosome C27314\r\n", "Processing chromosome C27314\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:22,953] [Preprocessor.java:241] [main] Processing chromosome C27320\r\n", "Processing chromosome C27320\r\n", "INFO [2014-03-08 06:13:22,961] [Preprocessor.java:241] [main] Processing chromosome C27342\r\n", "Processing chromosome C27342\r\n", "INFO [2014-03-08 06:13:22,978] [Preprocessor.java:241] [main] Processing chromosome C27356\r\n", "Processing chromosome C27356\r\n", "INFO [2014-03-08 06:13:22,985] [Preprocessor.java:241] [main] Processing chromosome C27358\r\n", "Processing chromosome C27358\r\n", "INFO [2014-03-08 06:13:22,993] [Preprocessor.java:241] [main] Processing chromosome C27360\r\n", "Processing chromosome C27360\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:23,022] [Preprocessor.java:241] [main] Processing chromosome C27364\r\n", "Processing chromosome C27364\r\n", "INFO [2014-03-08 06:13:23,036] [Preprocessor.java:241] [main] Processing chromosome C2737\r\n", "Processing chromosome C2737\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:23,067] [Preprocessor.java:241] [main] Processing chromosome C27378\r\n", "Processing chromosome C27378\r\n", "INFO [2014-03-08 06:13:23,092] [Preprocessor.java:241] [main] Processing chromosome C27386\r\n", "Processing chromosome C27386\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:23,105] [Preprocessor.java:241] [main] Processing chromosome C27394\r\n", "Processing chromosome C27394\r\n", "INFO [2014-03-08 06:13:23,124] [Preprocessor.java:241] [main] Processing chromosome C27400\r\n", "Processing chromosome C27400\r\n", "INFO [2014-03-08 06:13:23,130] [Preprocessor.java:241] [main] Processing chromosome C27410\r\n", "Processing chromosome C27410\r\n", "INFO [2014-03-08 06:13:23,151] [Preprocessor.java:241] [main] Processing chromosome C27412\r\n", "Processing chromosome C27412\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:23,166] [Preprocessor.java:241] [main] Processing chromosome C27428\r\n", "Processing chromosome C27428\r\n", "INFO [2014-03-08 06:13:23,177] [Preprocessor.java:241] [main] Processing chromosome C2743\r\n", "Processing chromosome C2743\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:23,236] [Preprocessor.java:241] [main] Processing chromosome C27432\r\n", "Processing chromosome C27432\r\n", "INFO [2014-03-08 06:13:23,243] [Preprocessor.java:241] [main] Processing chromosome C27444\r\n", "Processing chromosome C27444\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:23,259] [Preprocessor.java:241] [main] Processing chromosome C27446\r\n", "Processing chromosome C27446\r\n", "INFO [2014-03-08 06:13:23,272] [Preprocessor.java:241] [main] Processing chromosome C27452\r\n", "Processing chromosome C27452\r\n", "INFO [2014-03-08 06:13:23,299] [Preprocessor.java:241] [main] Processing chromosome C27460\r\n", "Processing chromosome C27460\r\n", "INFO [2014-03-08 06:13:23,305] [Preprocessor.java:241] [main] Processing chromosome C27462\r\n", "Processing chromosome C27462\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:23,314] [Preprocessor.java:241] [main] Processing chromosome C27478\r\n", "Processing chromosome C27478\r\n", "INFO [2014-03-08 06:13:23,330] [Preprocessor.java:241] [main] Processing chromosome C27480\r\n", "Processing chromosome C27480\r\n", "INFO [2014-03-08 06:13:23,349] [Preprocessor.java:241] [main] Processing chromosome C27482\r\n", "Processing chromosome C27482\r\n", "INFO [2014-03-08 06:13:23,351] [Preprocessor.java:241] [main] Processing chromosome C27498\r\n", "Processing chromosome C27498\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:23,367] [Preprocessor.java:241] [main] Processing chromosome C27500\r\n", "Processing chromosome C27500\r\n", "INFO [2014-03-08 06:13:23,394] [Preprocessor.java:241] [main] Processing chromosome C27510\r\n", "Processing chromosome C27510\r\n", "INFO [2014-03-08 06:13:23,402] [Preprocessor.java:241] [main] Processing chromosome C27526\r\n", "Processing chromosome C27526\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:23,420] [Preprocessor.java:241] [main] Processing chromosome C27530\r\n", "Processing chromosome C27530\r\n", "INFO [2014-03-08 06:13:23,443] [Preprocessor.java:241] [main] Processing chromosome C27552\r\n", "Processing chromosome C27552\r\n", "INFO [2014-03-08 06:13:23,451] [Preprocessor.java:241] [main] Processing chromosome C27556\r\n", "Processing chromosome C27556\r\n", "INFO [2014-03-08 06:13:23,460] [Preprocessor.java:241] [main] Processing chromosome C27558\r\n", "Processing chromosome C27558\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:23,467] [Preprocessor.java:241] [main] Processing chromosome C27566\r\n", "Processing chromosome C27566\r\n", "INFO [2014-03-08 06:13:23,494] [Preprocessor.java:241] [main] Processing chromosome C27570\r\n", "Processing chromosome C27570\r\n", "INFO [2014-03-08 06:13:23,510] [Preprocessor.java:241] [main] Processing chromosome C27578\r\n", "Processing chromosome C27578\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:23,515] [Preprocessor.java:241] [main] Processing chromosome C27580\r\n", "Processing chromosome C27580\r\n", "INFO [2014-03-08 06:13:23,517] [Preprocessor.java:241] [main] Processing chromosome C2761\r\n", "Processing chromosome C2761\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:23,571] [Preprocessor.java:241] [main] Processing chromosome C27612\r\n", "Processing chromosome C27612\r\n", "INFO [2014-03-08 06:13:23,588] [Preprocessor.java:241] [main] Processing chromosome C27614\r\n", "Processing chromosome C27614\r\n", "INFO [2014-03-08 06:13:23,599] [Preprocessor.java:241] [main] Processing chromosome C27630\r\n", "Processing chromosome C27630\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:23,618] [Preprocessor.java:241] [main] Processing chromosome C27638\r\n", "Processing chromosome C27638\r\n", "INFO [2014-03-08 06:13:23,635] [Preprocessor.java:241] [main] Processing chromosome C27640\r\n", "Processing chromosome C27640\r\n", "INFO [2014-03-08 06:13:23,646] [Preprocessor.java:241] [main] Processing chromosome C27644\r\n", "Processing chromosome C27644\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:23,685] [Preprocessor.java:241] [main] Processing chromosome C2765\r\n", "Processing chromosome C2765\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:23,741] [Preprocessor.java:241] [main] Processing chromosome C27668\r\n", "Processing chromosome C27668\r\n", "INFO [2014-03-08 06:13:23,762] [Preprocessor.java:241] [main] Processing chromosome C27688\r\n", "Processing chromosome C27688\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:23,788] [Preprocessor.java:241] [main] Processing chromosome C27692\r\n", "Processing chromosome C27692\r\n", "INFO [2014-03-08 06:13:23,795] [Preprocessor.java:241] [main] Processing chromosome C27694\r\n", "Processing chromosome C27694\r\n", "INFO [2014-03-08 06:13:23,811] [Preprocessor.java:241] [main] Processing chromosome C27696\r\n", "Processing chromosome C27696\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:23,824] [Preprocessor.java:241] [main] Processing chromosome C27698\r\n", "Processing chromosome C27698\r\n", "INFO [2014-03-08 06:13:23,857] [Preprocessor.java:241] [main] Processing chromosome C27700\r\n", "Processing chromosome C27700\r\n", "INFO [2014-03-08 06:13:23,869] [Preprocessor.java:241] [main] Processing chromosome C27706\r\n", "Processing chromosome C27706\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:23,875] [Preprocessor.java:241] [main] Processing chromosome C27712\r\n", "Processing chromosome C27712\r\n", "INFO [2014-03-08 06:13:23,896] [Preprocessor.java:241] [main] Processing chromosome C27718\r\n", "Processing chromosome C27718\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:23,933] [Preprocessor.java:241] [main] Processing chromosome C27722\r\n", "Processing chromosome C27722\r\n", "INFO [2014-03-08 06:13:23,939] [Preprocessor.java:241] [main] Processing chromosome C27726\r\n", "Processing chromosome C27726\r\n", "INFO [2014-03-08 06:13:23,943] [Preprocessor.java:241] [main] Processing chromosome C27732\r\n", "Processing chromosome C27732\r\n", "INFO [2014-03-08 06:13:23,946] [Preprocessor.java:241] [main] Processing chromosome C27742\r\n", "Processing chromosome C27742\r\n", "INFO [2014-03-08 06:13:23,971] [Preprocessor.java:241] [main] Processing chromosome C27746\r\n", "Processing chromosome C27746\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:23,994] [Preprocessor.java:241] [main] Processing chromosome C27748\r\n", "Processing chromosome C27748\r\n", "INFO [2014-03-08 06:13:23,998] [Preprocessor.java:241] [main] Processing chromosome C27754\r\n", "Processing chromosome C27754\r\n", "INFO [2014-03-08 06:13:24,011] [Preprocessor.java:241] [main] Processing chromosome C27762\r\n", "Processing chromosome C27762\r\n", "INFO [2014-03-08 06:13:24,027] [Preprocessor.java:241] [main] Processing chromosome C27770\r\n", "Processing chromosome C27770\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:24,050] [Preprocessor.java:241] [main] Processing chromosome C27778\r\n", "Processing chromosome C27778\r\n", "INFO [2014-03-08 06:13:24,054] [Preprocessor.java:241] [main] Processing chromosome C27784\r\n", "Processing chromosome C27784\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:24,090] [Preprocessor.java:241] [main] Processing chromosome C27792\r\n", "Processing chromosome C27792\r\n", "INFO [2014-03-08 06:13:24,098] [Preprocessor.java:241] [main] Processing chromosome C27794\r\n", "Processing chromosome C27794\r\n", "INFO [2014-03-08 06:13:24,103] [Preprocessor.java:241] [main] Processing chromosome C27812\r\n", "Processing chromosome C27812\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:24,137] [Preprocessor.java:241] [main] Processing chromosome C27816\r\n", "Processing chromosome C27816\r\n", "INFO [2014-03-08 06:13:24,145] [Preprocessor.java:241] [main] Processing chromosome C27830\r\n", "Processing chromosome C27830\r\n", "INFO [2014-03-08 06:13:24,151] [Preprocessor.java:241] [main] Processing chromosome C27836\r\n", "Processing chromosome C27836\r\n", "INFO [2014-03-08 06:13:24,156] [Preprocessor.java:241] [main] Processing chromosome C27850\r\n", "Processing chromosome C27850\r\n", "INFO [2014-03-08 06:13:24,169] [Preprocessor.java:241] [main] Processing chromosome C27874\r\n", "Processing chromosome C27874\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:24,188] [Preprocessor.java:241] [main] Processing chromosome C27882\r\n", "Processing chromosome C27882\r\n", "INFO [2014-03-08 06:13:24,196] [Preprocessor.java:241] [main] Processing chromosome C2789\r\n", "Processing chromosome C2789\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:24,250] [Preprocessor.java:241] [main] Processing chromosome C27902\r\n", "Processing chromosome C27902\r\n", "INFO [2014-03-08 06:13:24,252] [Preprocessor.java:241] [main] Processing chromosome C27928\r\n", "Processing chromosome C27928\r\n", "INFO [2014-03-08 06:13:24,258] [Preprocessor.java:241] [main] Processing chromosome C2793\r\n", "Processing chromosome C2793\r\n", "INFO [2014-03-08 06:13:24,288] [Preprocessor.java:241] [main] Processing chromosome C27944\r\n", "Processing chromosome C27944\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:24,330] [Preprocessor.java:241] [main] Processing chromosome C27954\r\n", "Processing chromosome C27954\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:24,348] [Preprocessor.java:241] [main] Processing chromosome C27962\r\n", "Processing chromosome C27962\r\n", "INFO [2014-03-08 06:13:24,366] [Preprocessor.java:241] [main] Processing chromosome C27964\r\n", "Processing chromosome C27964\r\n", "INFO [2014-03-08 06:13:24,380] [Preprocessor.java:241] [main] Processing chromosome C27966\r\n", "Processing chromosome C27966\r\n", "INFO [2014-03-08 06:13:24,388] [Preprocessor.java:241] [main] Processing chromosome C27984\r\n", "Processing chromosome C27984\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:24,391] [Preprocessor.java:241] [main] Processing chromosome C28002\r\n", "Processing chromosome C28002\r\n", "INFO [2014-03-08 06:13:24,402] [Preprocessor.java:241] [main] Processing chromosome C28004\r\n", "Processing chromosome C28004\r\n", "INFO [2014-03-08 06:13:24,423] [Preprocessor.java:241] [main] Processing chromosome C28006\r\n", "Processing chromosome C28006\r\n", "INFO [2014-03-08 06:13:24,433] [Preprocessor.java:241] [main] Processing chromosome C28016\r\n", "Processing chromosome C28016\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:24,451] [Preprocessor.java:241] [main] Processing chromosome C28026\r\n", "Processing chromosome C28026\r\n", "INFO [2014-03-08 06:13:24,457] [Preprocessor.java:241] [main] Processing chromosome C28030\r\n", "Processing chromosome C28030\r\n", "INFO [2014-03-08 06:13:24,465] [Preprocessor.java:241] [main] Processing chromosome C28036\r\n", "Processing chromosome C28036\r\n", "INFO [2014-03-08 06:13:24,486] [Preprocessor.java:241] [main] Processing chromosome C28044\r\n", "Processing chromosome C28044\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:24,525] [Preprocessor.java:241] [main] Processing chromosome C28062\r\n", "Processing chromosome C28062\r\n", "INFO [2014-03-08 06:13:24,537] [Preprocessor.java:241] [main] Processing chromosome C28064\r\n", "Processing chromosome C28064\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:24,586] [Preprocessor.java:241] [main] Processing chromosome C28070\r\n", "Processing chromosome C28070\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:24,617] [Preprocessor.java:241] [main] Processing chromosome C28076\r\n", "Processing chromosome C28076\r\n", "INFO [2014-03-08 06:13:24,632] [Preprocessor.java:241] [main] Processing chromosome C28082\r\n", "Processing chromosome C28082\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:24,655] [Preprocessor.java:241] [main] Processing chromosome C28090\r\n", "Processing chromosome C28090\r\n", "INFO [2014-03-08 06:13:24,690] [Preprocessor.java:241] [main] Processing chromosome C28108\r\n", "Processing chromosome C28108\r\n", "INFO [2014-03-08 06:13:24,699] [Preprocessor.java:241] [main] Processing chromosome C28120\r\n", "Processing chromosome C28120\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:24,709] [Preprocessor.java:241] [main] Processing chromosome C28132\r\n", "Processing chromosome C28132\r\n", "INFO [2014-03-08 06:13:24,721] [Preprocessor.java:241] [main] Processing chromosome C28144\r\n", "Processing chromosome C28144\r\n", "INFO [2014-03-08 06:13:24,743] [Preprocessor.java:241] [main] Processing chromosome C28150\r\n", "Processing chromosome C28150\r\n", "INFO [2014-03-08 06:13:24,749] [Preprocessor.java:241] [main] Processing chromosome C28152\r\n", "Processing chromosome C28152\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:24,756] [Preprocessor.java:241] [main] Processing chromosome C28168\r\n", "Processing chromosome C28168\r\n", "INFO [2014-03-08 06:13:24,769] [Preprocessor.java:241] [main] Processing chromosome C28170\r\n", "Processing chromosome C28170\r\n", "INFO [2014-03-08 06:13:24,783] [Preprocessor.java:241] [main] Processing chromosome C28184\r\n", "Processing chromosome C28184\r\n", "INFO [2014-03-08 06:13:24,802] [Preprocessor.java:241] [main] Processing chromosome C28190\r\n", "Processing chromosome C28190\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:24,836] [Preprocessor.java:241] [main] Processing chromosome C28194\r\n", "Processing chromosome C28194\r\n", "INFO [2014-03-08 06:13:24,843] [Preprocessor.java:241] [main] Processing chromosome C28206\r\n", "Processing chromosome C28206\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:24,856] [Preprocessor.java:241] [main] Processing chromosome C28216\r\n", "Processing chromosome C28216\r\n", "INFO [2014-03-08 06:13:24,869] [Preprocessor.java:241] [main] Processing chromosome C28218\r\n", "Processing chromosome C28218\r\n", "INFO [2014-03-08 06:13:24,892] [Preprocessor.java:241] [main] Processing chromosome C28224\r\n", "Processing chromosome C28224\r\n", "INFO [2014-03-08 06:13:24,904] [Preprocessor.java:241] [main] Processing chromosome C28230\r\n", "Processing chromosome C28230\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:24,926] [Preprocessor.java:241] [main] Processing chromosome C28242\r\n", "Processing chromosome C28242\r\n", "INFO [2014-03-08 06:13:24,956] [Preprocessor.java:241] [main] Processing chromosome C28246\r\n", "Processing chromosome C28246\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:24,984] [Preprocessor.java:241] [main] Processing chromosome C28254\r\n", "Processing chromosome C28254\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:25,020] [Preprocessor.java:241] [main] Processing chromosome C28256\r\n", "Processing chromosome C28256\r\n", "INFO [2014-03-08 06:13:25,032] [Preprocessor.java:241] [main] Processing chromosome C28258\r\n", "Processing chromosome C28258\r\n", "INFO [2014-03-08 06:13:25,058] [Preprocessor.java:241] [main] Processing chromosome C28260\r\n", "Processing chromosome C28260\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:25,094] [Preprocessor.java:241] [main] Processing chromosome C28272\r\n", "Processing chromosome C28272\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:25,116] [Preprocessor.java:241] [main] Processing chromosome C28282\r\n", "Processing chromosome C28282\r\n", "INFO [2014-03-08 06:13:25,130] [Preprocessor.java:241] [main] Processing chromosome C28286\r\n", "Processing chromosome C28286\r\n", "INFO [2014-03-08 06:13:25,147] [Preprocessor.java:241] [main] Processing chromosome C28296\r\n", "Processing chromosome C28296\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:25,169] [Preprocessor.java:241] [main] Processing chromosome C28298\r\n", "Processing chromosome C28298\r\n", "INFO [2014-03-08 06:13:25,183] [Preprocessor.java:241] [main] Processing chromosome C28306\r\n", "Processing chromosome C28306\r\n", "INFO [2014-03-08 06:13:25,212] [Preprocessor.java:241] [main] Processing chromosome C28310\r\n", "Processing chromosome C28310\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:25,221] [Preprocessor.java:241] [main] Processing chromosome C28316\r\n", "Processing chromosome C28316\r\n", "INFO [2014-03-08 06:13:25,224] [Preprocessor.java:241] [main] Processing chromosome C28328\r\n", "Processing chromosome C28328\r\n", "INFO [2014-03-08 06:13:25,232] [Preprocessor.java:241] [main] Processing chromosome C28340\r\n", "Processing chromosome C28340\r\n", "INFO [2014-03-08 06:13:25,248] [Preprocessor.java:241] [main] Processing chromosome C28348\r\n", "Processing chromosome C28348\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:25,269] [Preprocessor.java:241] [main] Processing chromosome C28350\r\n", "Processing chromosome C28350\r\n", "INFO [2014-03-08 06:13:25,279] [Preprocessor.java:241] [main] Processing chromosome C28358\r\n", "Processing chromosome C28358\r\n", "INFO [2014-03-08 06:13:25,281] [Preprocessor.java:241] [main] Processing chromosome C28362\r\n", "Processing chromosome C28362\r\n", "INFO [2014-03-08 06:13:25,302] [Preprocessor.java:241] [main] Processing chromosome C28364\r\n", "Processing chromosome C28364\r\n", "INFO [2014-03-08 06:13:25,312] [Preprocessor.java:241] [main] Processing chromosome C28366\r\n", "Processing chromosome C28366\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:25,318] [Preprocessor.java:241] [main] Processing chromosome C28382\r\n", "Processing chromosome C28382\r\n", "INFO [2014-03-08 06:13:25,329] [Preprocessor.java:241] [main] Processing chromosome C28398\r\n", "Processing chromosome C28398\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:25,378] [Preprocessor.java:241] [main] Processing chromosome C28408\r\n", "Processing chromosome C28408\r\n", "INFO [2014-03-08 06:13:25,391] [Preprocessor.java:241] [main] Processing chromosome C28414\r\n", "Processing chromosome C28414\r\n", "INFO [2014-03-08 06:13:25,401] [Preprocessor.java:241] [main] Processing chromosome C28420\r\n", "Processing chromosome C28420\r\n", "INFO [2014-03-08 06:13:25,408] [Preprocessor.java:241] [main] Processing chromosome C28426\r\n", "Processing chromosome C28426\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:25,437] [Preprocessor.java:241] [main] Processing chromosome C28430\r\n", "Processing chromosome C28430\r\n", "INFO [2014-03-08 06:13:25,461] [Preprocessor.java:241] [main] Processing chromosome C28432\r\n", "Processing chromosome C28432\r\n", "INFO [2014-03-08 06:13:25,471] [Preprocessor.java:241] [main] Processing chromosome C28444\r\n", "Processing chromosome C28444\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:25,486] [Preprocessor.java:241] [main] Processing chromosome C28450\r\n", "Processing chromosome C28450\r\n", "INFO [2014-03-08 06:13:25,490] [Preprocessor.java:241] [main] Processing chromosome C28454\r\n", "Processing chromosome C28454\r\n", "INFO [2014-03-08 06:13:25,519] [Preprocessor.java:241] [main] Processing chromosome C28462\r\n", "Processing chromosome C28462\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:25,539] [Preprocessor.java:241] [main] Processing chromosome C28468\r\n", "Processing chromosome C28468\r\n", "INFO [2014-03-08 06:13:25,564] [Preprocessor.java:241] [main] Processing chromosome C28470\r\n", "Processing chromosome C28470\r\n", "INFO [2014-03-08 06:13:25,569] [Preprocessor.java:241] [main] Processing chromosome C28472\r\n", "Processing chromosome C28472\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:25,587] [Preprocessor.java:241] [main] Processing chromosome C28476\r\n", "Processing chromosome C28476\r\n", "INFO [2014-03-08 06:13:25,590] [Preprocessor.java:241] [main] Processing chromosome C28486\r\n", "Processing chromosome C28486\r\n", "INFO [2014-03-08 06:13:25,595] [Preprocessor.java:241] [main] Processing chromosome C28498\r\n", "Processing chromosome C28498\r\n", "INFO [2014-03-08 06:13:25,614] [Preprocessor.java:241] [main] Processing chromosome C28502\r\n", "Processing chromosome C28502\r\n", "INFO [2014-03-08 06:13:25,618] [Preprocessor.java:241] [main] Processing chromosome C28506\r\n", "Processing chromosome C28506\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:25,631] [Preprocessor.java:241] [main] Processing chromosome C28510\r\n", "Processing chromosome C28510\r\n", "INFO [2014-03-08 06:13:25,640] [Preprocessor.java:241] [main] Processing chromosome C28512\r\n", "Processing chromosome C28512\r\n", "INFO [2014-03-08 06:13:25,667] [Preprocessor.java:241] [main] Processing chromosome C28514\r\n", "Processing chromosome C28514\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:25,702] [Preprocessor.java:241] [main] Processing chromosome C28522\r\n", "Processing chromosome C28522\r\n", "INFO [2014-03-08 06:13:25,718] [Preprocessor.java:241] [main] Processing chromosome C28526\r\n", "Processing chromosome C28526\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:25,730] [Preprocessor.java:241] [main] Processing chromosome C28534\r\n", "Processing chromosome C28534\r\n", "INFO [2014-03-08 06:13:25,759] [Preprocessor.java:241] [main] Processing chromosome C28536\r\n", "Processing chromosome C28536\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:25,813] [Preprocessor.java:241] [main] Processing chromosome C28540\r\n", "Processing chromosome C28540\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:25,832] [Preprocessor.java:241] [main] Processing chromosome C28542\r\n", "Processing chromosome C28542\r\n", "INFO [2014-03-08 06:13:25,835] [Preprocessor.java:241] [main] Processing chromosome C28544\r\n", "Processing chromosome C28544\r\n", "INFO [2014-03-08 06:13:25,870] [Preprocessor.java:241] [main] Processing chromosome C28546\r\n", "Processing chromosome C28546\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:25,887] [Preprocessor.java:241] [main] Processing chromosome C28550\r\n", "Processing chromosome C28550\r\n", "INFO [2014-03-08 06:13:25,895] [Preprocessor.java:241] [main] Processing chromosome C28554\r\n", "Processing chromosome C28554\r\n", "INFO [2014-03-08 06:13:25,901] [Preprocessor.java:241] [main] Processing chromosome C28574\r\n", "Processing chromosome C28574\r\n", "INFO [2014-03-08 06:13:25,904] [Preprocessor.java:241] [main] Processing chromosome C28582\r\n", "Processing chromosome C28582\r\n", "INFO [2014-03-08 06:13:25,910] [Preprocessor.java:241] [main] Processing chromosome C28588\r\n", "Processing chromosome C28588\r\n", "INFO [2014-03-08 06:13:25,921] [Preprocessor.java:241] [main] Processing chromosome C28592\r\n", "Processing chromosome C28592\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:25,939] [Preprocessor.java:241] [main] Processing chromosome C28594\r\n", "Processing chromosome C28594\r\n", "INFO [2014-03-08 06:13:25,958] [Preprocessor.java:241] [main] Processing chromosome C28602\r\n", "Processing chromosome C28602\r\n", "INFO [2014-03-08 06:13:25,968] [Preprocessor.java:241] [main] Processing chromosome C28618\r\n", "Processing chromosome C28618\r\n", "INFO [2014-03-08 06:13:25,982] [Preprocessor.java:241] [main] Processing chromosome C28622\r\n", "Processing chromosome C28622\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:26,012] [Preprocessor.java:241] [main] Processing chromosome C28626\r\n", "Processing chromosome C28626\r\n", "INFO [2014-03-08 06:13:26,023] [Preprocessor.java:241] [main] Processing chromosome C28628\r\n", "Processing chromosome C28628\r\n", "INFO [2014-03-08 06:13:26,035] [Preprocessor.java:241] [main] Processing chromosome C28632\r\n", "Processing chromosome C28632\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:26,048] [Preprocessor.java:241] [main] Processing chromosome C28644\r\n", "Processing chromosome C28644\r\n", "INFO [2014-03-08 06:13:26,067] [Preprocessor.java:241] [main] Processing chromosome C28652\r\n", "Processing chromosome C28652\r\n", "INFO [2014-03-08 06:13:26,080] [Preprocessor.java:241] [main] Processing chromosome C28654\r\n", "Processing chromosome C28654\r\n", "INFO [2014-03-08 06:13:26,089] [Preprocessor.java:241] [main] Processing chromosome C28656\r\n", "Processing chromosome C28656\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:26,109] [Preprocessor.java:241] [main] Processing chromosome C28666\r\n", "Processing chromosome C28666\r\n", "INFO [2014-03-08 06:13:26,130] [Preprocessor.java:241] [main] Processing chromosome C28678\r\n", "Processing chromosome C28678\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:26,158] [Preprocessor.java:241] [main] Processing chromosome C28684\r\n", "Processing chromosome C28684\r\n", "INFO [2014-03-08 06:13:26,176] [Preprocessor.java:241] [main] Processing chromosome C28702\r\n", "Processing chromosome C28702\r\n", "INFO [2014-03-08 06:13:26,183] [Preprocessor.java:241] [main] Processing chromosome C28704\r\n", "Processing chromosome C28704\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:26,195] [Preprocessor.java:241] [main] Processing chromosome C28708\r\n", "Processing chromosome C28708\r\n", "INFO [2014-03-08 06:13:26,238] [Preprocessor.java:241] [main] Processing chromosome C28716\r\n", "Processing chromosome C28716\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:26,252] [Preprocessor.java:241] [main] Processing chromosome C28718\r\n", "Processing chromosome C28718\r\n", "INFO [2014-03-08 06:13:26,263] [Preprocessor.java:241] [main] Processing chromosome C28722\r\n", "Processing chromosome C28722\r\n", "INFO [2014-03-08 06:13:26,282] [Preprocessor.java:241] [main] Processing chromosome C28726\r\n", "Processing chromosome C28726\r\n", "INFO [2014-03-08 06:13:26,291] [Preprocessor.java:241] [main] Processing chromosome C28728\r\n", "Processing chromosome C28728\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:26,297] [Preprocessor.java:241] [main] Processing chromosome C28732\r\n", "Processing chromosome C28732\r\n", "INFO [2014-03-08 06:13:26,313] [Preprocessor.java:241] [main] Processing chromosome C28734\r\n", "Processing chromosome C28734\r\n", "INFO [2014-03-08 06:13:26,319] [Preprocessor.java:241] [main] Processing chromosome C28736\r\n", "Processing chromosome C28736\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:26,351] [Preprocessor.java:241] [main] Processing chromosome C28748\r\n", "Processing chromosome C28748\r\n", "INFO [2014-03-08 06:13:26,355] [Preprocessor.java:241] [main] Processing chromosome C28752\r\n", "Processing chromosome C28752\r\n", "INFO [2014-03-08 06:13:26,370] [Preprocessor.java:241] [main] Processing chromosome C28760\r\n", "Processing chromosome C28760\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:26,400] [Preprocessor.java:241] [main] Processing chromosome C28766\r\n", "Processing chromosome C28766\r\n", "INFO [2014-03-08 06:13:26,427] [Preprocessor.java:241] [main] Processing chromosome C2877\r\n", "Processing chromosome C2877\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:26,458] [Preprocessor.java:241] [main] Processing chromosome C28772\r\n", "Processing chromosome C28772\r\n", "INFO [2014-03-08 06:13:26,494] [Preprocessor.java:241] [main] Processing chromosome C28784\r\n", "Processing chromosome C28784\r\n", "INFO [2014-03-08 06:13:26,496] [Preprocessor.java:241] [main] Processing chromosome C28800\r\n", "Processing chromosome C28800\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:26,512] [Preprocessor.java:241] [main] Processing chromosome C28802\r\n", "Processing chromosome C28802\r\n", "INFO [2014-03-08 06:13:26,531] [Preprocessor.java:241] [main] Processing chromosome C28806\r\n", "Processing chromosome C28806\r\n", "INFO [2014-03-08 06:13:26,549] [Preprocessor.java:241] [main] Processing chromosome C28808\r\n", "Processing chromosome C28808\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:26,555] [Preprocessor.java:241] [main] Processing chromosome C28816\r\n", "Processing chromosome C28816\r\n", "INFO [2014-03-08 06:13:26,575] [Preprocessor.java:241] [main] Processing chromosome C28830\r\n", "Processing chromosome C28830\r\n", "INFO [2014-03-08 06:13:26,583] [Preprocessor.java:241] [main] Processing chromosome C28836\r\n", "Processing chromosome C28836\r\n", "INFO [2014-03-08 06:13:26,598] [Preprocessor.java:241] [main] Processing chromosome C28838\r\n", "Processing chromosome C28838\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:26,616] [Preprocessor.java:241] [main] Processing chromosome C28840\r\n", "Processing chromosome C28840\r\n", "INFO [2014-03-08 06:13:26,629] [Preprocessor.java:241] [main] Processing chromosome C28846\r\n", "Processing chromosome C28846\r\n", "INFO [2014-03-08 06:13:26,647] [Preprocessor.java:241] [main] Processing chromosome C28850\r\n", "Processing chromosome C28850\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:26,664] [Preprocessor.java:241] [main] Processing chromosome C28852\r\n", "Processing chromosome C28852\r\n", "INFO [2014-03-08 06:13:26,677] [Preprocessor.java:241] [main] Processing chromosome C28858\r\n", "Processing chromosome C28858\r\n", "INFO [2014-03-08 06:13:26,683] [Preprocessor.java:241] [main] Processing chromosome C28864\r\n", "Processing chromosome C28864\r\n", "INFO [2014-03-08 06:13:26,693] [Preprocessor.java:241] [main] Processing chromosome C28876\r\n", "Processing chromosome C28876\r\n", "INFO [2014-03-08 06:13:26,702] [Preprocessor.java:241] [main] Processing chromosome C28884\r\n", "Processing chromosome C28884\r\n", "INFO [2014-03-08 06:13:26,707] [Preprocessor.java:241] [main] Processing chromosome C28898\r\n", "Processing chromosome C28898\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:26,717] [Preprocessor.java:241] [main] Processing chromosome C28902\r\n", "Processing chromosome C28902\r\n", "INFO [2014-03-08 06:13:26,725] [Preprocessor.java:241] [main] Processing chromosome C28906\r\n", "Processing chromosome C28906\r\n", "INFO [2014-03-08 06:13:26,733] [Preprocessor.java:241] [main] Processing chromosome C28910\r\n", "Processing chromosome C28910\r\n", "INFO [2014-03-08 06:13:26,746] [Preprocessor.java:241] [main] Processing chromosome C28916\r\n", "Processing chromosome C28916\r\n", "INFO [2014-03-08 06:13:26,753] [Preprocessor.java:241] [main] Processing chromosome C28934\r\n", "Processing chromosome C28934\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:26,761] [Preprocessor.java:241] [main] Processing chromosome C28952\r\n", "Processing chromosome C28952\r\n", "INFO [2014-03-08 06:13:26,778] [Preprocessor.java:241] [main] Processing chromosome C28958\r\n", "Processing chromosome C28958\r\n", "INFO [2014-03-08 06:13:26,782] [Preprocessor.java:241] [main] Processing chromosome C28974\r\n", "Processing chromosome C28974\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:26,812] [Preprocessor.java:241] [main] Processing chromosome C28982\r\n", "Processing chromosome C28982\r\n", "INFO [2014-03-08 06:13:26,832] [Preprocessor.java:241] [main] Processing chromosome C28990\r\n", "Processing chromosome C28990\r\n", "INFO [2014-03-08 06:13:26,856] [Preprocessor.java:241] [main] Processing chromosome C28992\r\n", "Processing chromosome C28992\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:26,887] [Preprocessor.java:241] [main] Processing chromosome C28996\r\n", "Processing chromosome C28996\r\n", "INFO [2014-03-08 06:13:26,905] [Preprocessor.java:241] [main] Processing chromosome C28998\r\n", "Processing chromosome C28998\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:26,930] [Preprocessor.java:241] [main] Processing chromosome C29006\r\n", "Processing chromosome C29006\r\n", "INFO [2014-03-08 06:13:26,936] [Preprocessor.java:241] [main] Processing chromosome C29008\r\n", "Processing chromosome C29008\r\n", "INFO [2014-03-08 06:13:26,952] [Preprocessor.java:241] [main] Processing chromosome C29010\r\n", "Processing chromosome C29010\r\n", "INFO [2014-03-08 06:13:26,966] [Preprocessor.java:241] [main] Processing chromosome C29022\r\n", "Processing chromosome C29022\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:26,971] [Preprocessor.java:241] [main] Processing chromosome C29030\r\n", "Processing chromosome C29030\r\n", "INFO [2014-03-08 06:13:26,975] [Preprocessor.java:241] [main] Processing chromosome C29038\r\n", "Processing chromosome C29038\r\n", "INFO [2014-03-08 06:13:26,981] [Preprocessor.java:241] [main] Processing chromosome C29044\r\n", "Processing chromosome C29044\r\n", "INFO [2014-03-08 06:13:26,985] [Preprocessor.java:241] [main] Processing chromosome C29048\r\n", "Processing chromosome C29048\r\n", "INFO [2014-03-08 06:13:27,008] [Preprocessor.java:241] [main] Processing chromosome C29050\r\n", "Processing chromosome C29050\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:27,019] [Preprocessor.java:241] [main] Processing chromosome C29052\r\n", "Processing chromosome C29052\r\n", "INFO [2014-03-08 06:13:27,040] [Preprocessor.java:241] [main] Processing chromosome C29066\r\n", "Processing chromosome C29066\r\n", "INFO [2014-03-08 06:13:27,053] [Preprocessor.java:241] [main] Processing chromosome C29070\r\n", "Processing chromosome C29070\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:27,071] [Preprocessor.java:241] [main] Processing chromosome C29072\r\n", "Processing chromosome C29072\r\n", "INFO [2014-03-08 06:13:27,074] [Preprocessor.java:241] [main] Processing chromosome C29084\r\n", "Processing chromosome C29084\r\n", "INFO [2014-03-08 06:13:27,078] [Preprocessor.java:241] [main] Processing chromosome C29100\r\n", "Processing chromosome C29100\r\n", "INFO [2014-03-08 06:13:27,099] [Preprocessor.java:241] [main] Processing chromosome C29106\r\n", "Processing chromosome C29106\r\n", "INFO [2014-03-08 06:13:27,102] [Preprocessor.java:241] [main] Processing chromosome C29108\r\n", "Processing chromosome C29108\r\n", "INFO [2014-03-08 06:13:27,104] [Preprocessor.java:241] [main] Processing chromosome C29110\r\n", "Processing chromosome C29110\r\n", "INFO [2014-03-08 06:13:27,116] [Preprocessor.java:241] [main] Processing chromosome C29112\r\n", "Processing chromosome C29112\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:27,131] [Preprocessor.java:241] [main] Processing chromosome C29114\r\n", "Processing chromosome C29114\r\n", "INFO [2014-03-08 06:13:27,141] [Preprocessor.java:241] [main] Processing chromosome C29122\r\n", "Processing chromosome C29122\r\n", "INFO [2014-03-08 06:13:27,144] [Preprocessor.java:241] [main] Processing chromosome C29132\r\n", "Processing chromosome C29132\r\n", "INFO [2014-03-08 06:13:27,158] [Preprocessor.java:241] [main] Processing chromosome C29134\r\n", "Processing chromosome C29134\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:27,173] [Preprocessor.java:241] [main] Processing chromosome C29144\r\n", "Processing chromosome C29144\r\n", "INFO [2014-03-08 06:13:27,195] [Preprocessor.java:241] [main] Processing chromosome C29154\r\n", "Processing chromosome C29154\r\n", "INFO [2014-03-08 06:13:27,197] [Preprocessor.java:241] [main] Processing chromosome C29164\r\n", "Processing chromosome C29164\r\n", "INFO [2014-03-08 06:13:27,217] [Preprocessor.java:241] [main] Processing chromosome C29168\r\n", "Processing chromosome C29168\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:27,253] [Preprocessor.java:241] [main] Processing chromosome C29170\r\n", "Processing chromosome C29170\r\n", "INFO [2014-03-08 06:13:27,257] [Preprocessor.java:241] [main] Processing chromosome C29178\r\n", "Processing chromosome C29178\r\n", "INFO [2014-03-08 06:13:27,271] [Preprocessor.java:241] [main] Processing chromosome C29184\r\n", "Processing chromosome C29184\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:27,278] [Preprocessor.java:241] [main] Processing chromosome C29186\r\n", "Processing chromosome C29186\r\n", "INFO [2014-03-08 06:13:27,313] [Preprocessor.java:241] [main] Processing chromosome C29188\r\n", "Processing chromosome C29188\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:27,331] [Preprocessor.java:241] [main] Processing chromosome C29192\r\n", "Processing chromosome C29192\r\n", "INFO [2014-03-08 06:13:27,338] [Preprocessor.java:241] [main] Processing chromosome C29194\r\n", "Processing chromosome C29194\r\n", "INFO [2014-03-08 06:13:27,345] [Preprocessor.java:241] [main] Processing chromosome C29202\r\n", "Processing chromosome C29202\r\n", "INFO [2014-03-08 06:13:27,347] [Preprocessor.java:241] [main] Processing chromosome C29208\r\n", "Processing chromosome C29208\r\n", "INFO [2014-03-08 06:13:27,366] [Preprocessor.java:241] [main] Processing chromosome C29214\r\n", "Processing chromosome C29214\r\n", "INFO [2014-03-08 06:13:27,369] [Preprocessor.java:241] [main] Processing chromosome C29222\r\n", "Processing chromosome C29222\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:27,381] [Preprocessor.java:241] [main] Processing chromosome C29224\r\n", "Processing chromosome C29224\r\n", "INFO [2014-03-08 06:13:27,385] [Preprocessor.java:241] [main] Processing chromosome C29238\r\n", "Processing chromosome C29238\r\n", "INFO [2014-03-08 06:13:27,390] [Preprocessor.java:241] [main] Processing chromosome C29242\r\n", "Processing chromosome C29242\r\n", "INFO [2014-03-08 06:13:27,403] [Preprocessor.java:241] [main] Processing chromosome C29244\r\n", "Processing chromosome C29244\r\n", "INFO [2014-03-08 06:13:27,423] [Preprocessor.java:241] [main] Processing chromosome C29246\r\n", "Processing chromosome C29246\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:27,433] [Preprocessor.java:241] [main] Processing chromosome C29248\r\n", "Processing chromosome C29248\r\n", "INFO [2014-03-08 06:13:27,443] [Preprocessor.java:241] [main] Processing chromosome C29254\r\n", "Processing chromosome C29254\r\n", "INFO [2014-03-08 06:13:27,460] [Preprocessor.java:241] [main] Processing chromosome C29258\r\n", "Processing chromosome C29258\r\n", "INFO [2014-03-08 06:13:27,478] [Preprocessor.java:241] [main] Processing chromosome C29260\r\n", "Processing chromosome C29260\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:27,488] [Preprocessor.java:241] [main] Processing chromosome C29272\r\n", "Processing chromosome C29272\r\n", "INFO [2014-03-08 06:13:27,490] [Preprocessor.java:241] [main] Processing chromosome C29274\r\n", "Processing chromosome C29274\r\n", "INFO [2014-03-08 06:13:27,507] [Preprocessor.java:241] [main] Processing chromosome C29280\r\n", "Processing chromosome C29280\r\n", "INFO [2014-03-08 06:13:27,529] [Preprocessor.java:241] [main] Processing chromosome C29290\r\n", "Processing chromosome C29290\r\n", "INFO [2014-03-08 06:13:27,531] [Preprocessor.java:241] [main] Processing chromosome C29294\r\n", "Processing chromosome C29294\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:27,560] [Preprocessor.java:241] [main] Processing chromosome C29298\r\n", "Processing chromosome C29298\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:27,584] [Preprocessor.java:241] [main] Processing chromosome C29300\r\n", "Processing chromosome C29300\r\n", "INFO [2014-03-08 06:13:27,601] [Preprocessor.java:241] [main] Processing chromosome C29308\r\n", "Processing chromosome C29308\r\n", "INFO [2014-03-08 06:13:27,608] [Preprocessor.java:241] [main] Processing chromosome C2931\r\n", "Processing chromosome C2931\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:27,665] [Preprocessor.java:241] [main] Processing chromosome C29320\r\n", "Processing chromosome C29320\r\n", "INFO [2014-03-08 06:13:27,687] [Preprocessor.java:241] [main] Processing chromosome C29322\r\n", "Processing chromosome C29322\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:27,702] [Preprocessor.java:241] [main] Processing chromosome C29340\r\n", "Processing chromosome C29340\r\n", "INFO [2014-03-08 06:13:27,708] [Preprocessor.java:241] [main] Processing chromosome C29344\r\n", "Processing chromosome C29344\r\n", "INFO [2014-03-08 06:13:27,716] [Preprocessor.java:241] [main] Processing chromosome C29346\r\n", "Processing chromosome C29346\r\n", "INFO [2014-03-08 06:13:27,738] [Preprocessor.java:241] [main] Processing chromosome C29348\r\n", "Processing chromosome C29348\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:27,744] [Preprocessor.java:241] [main] Processing chromosome C29354\r\n", "Processing chromosome C29354\r\n", "INFO [2014-03-08 06:13:27,751] [Preprocessor.java:241] [main] Processing chromosome C29356\r\n", "Processing chromosome C29356\r\n", "INFO [2014-03-08 06:13:27,764] [Preprocessor.java:241] [main] Processing chromosome C29362\r\n", "Processing chromosome C29362\r\n", "INFO [2014-03-08 06:13:27,776] [Preprocessor.java:241] [main] Processing chromosome C29364\r\n", "Processing chromosome C29364\r\n", "INFO [2014-03-08 06:13:27,787] [Preprocessor.java:241] [main] Processing chromosome C29368\r\n", "Processing chromosome C29368\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:27,819] [Preprocessor.java:241] [main] Processing chromosome C29380\r\n", "Processing chromosome C29380\r\n", "INFO [2014-03-08 06:13:27,831] [Preprocessor.java:241] [main] Processing chromosome C29388\r\n", "Processing chromosome C29388\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:27,851] [Preprocessor.java:241] [main] Processing chromosome C29394\r\n", "Processing chromosome C29394\r\n", "INFO [2014-03-08 06:13:27,873] [Preprocessor.java:241] [main] Processing chromosome C29398\r\n", "Processing chromosome C29398\r\n", "INFO [2014-03-08 06:13:27,886] [Preprocessor.java:241] [main] Processing chromosome C29400\r\n", "Processing chromosome C29400\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:27,895] [Preprocessor.java:241] [main] Processing chromosome C29408\r\n", "Processing chromosome C29408\r\n", "INFO [2014-03-08 06:13:27,901] [Preprocessor.java:241] [main] Processing chromosome C29410\r\n", "Processing chromosome C29410\r\n", "INFO [2014-03-08 06:13:27,928] [Preprocessor.java:241] [main] Processing chromosome C29414\r\n", "Processing chromosome C29414\r\n", "INFO [2014-03-08 06:13:27,937] [Preprocessor.java:241] [main] Processing chromosome C29416\r\n", "Processing chromosome C29416\r\n", "INFO [2014-03-08 06:13:27,941] [Preprocessor.java:241] [main] Processing chromosome C29424\r\n", "Processing chromosome C29424\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:27,954] [Preprocessor.java:241] [main] Processing chromosome C29428\r\n", "Processing chromosome C29428\r\n", "INFO [2014-03-08 06:13:27,968] [Preprocessor.java:241] [main] Processing chromosome C29432\r\n", "Processing chromosome C29432\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:28,017] [Preprocessor.java:241] [main] Processing chromosome C29438\r\n", "Processing chromosome C29438\r\n", "INFO [2014-03-08 06:13:28,025] [Preprocessor.java:241] [main] Processing chromosome C29444\r\n", "Processing chromosome C29444\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:28,051] [Preprocessor.java:241] [main] Processing chromosome C29446\r\n", "Processing chromosome C29446\r\n", "INFO [2014-03-08 06:13:28,069] [Preprocessor.java:241] [main] Processing chromosome C29450\r\n", "Processing chromosome C29450\r\n", "INFO [2014-03-08 06:13:28,088] [Preprocessor.java:241] [main] Processing chromosome C29458\r\n", "Processing chromosome C29458\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:28,109] [Preprocessor.java:241] [main] Processing chromosome C29472\r\n", "Processing chromosome C29472\r\n", "INFO [2014-03-08 06:13:28,115] [Preprocessor.java:241] [main] Processing chromosome C29474\r\n", "Processing chromosome C29474\r\n", "INFO [2014-03-08 06:13:28,141] [Preprocessor.java:241] [main] Processing chromosome C29494\r\n", "Processing chromosome C29494\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:28,152] [Preprocessor.java:241] [main] Processing chromosome C29498\r\n", "Processing chromosome C29498\r\n", "INFO [2014-03-08 06:13:28,158] [Preprocessor.java:241] [main] Processing chromosome C29506\r\n", "Processing chromosome C29506\r\n", "INFO [2014-03-08 06:13:28,168] [Preprocessor.java:241] [main] Processing chromosome C29510\r\n", "Processing chromosome C29510\r\n", "INFO [2014-03-08 06:13:28,174] [Preprocessor.java:241] [main] Processing chromosome C29516\r\n", "Processing chromosome C29516\r\n", "INFO [2014-03-08 06:13:28,176] [Preprocessor.java:241] [main] Processing chromosome C29518\r\n", "Processing chromosome C29518\r\n", "INFO [2014-03-08 06:13:28,185] [Preprocessor.java:241] [main] Processing chromosome C29524\r\n", "Processing chromosome C29524\r\n", "INFO [2014-03-08 06:13:28,188] [Preprocessor.java:241] [main] Processing chromosome C29526\r\n", "Processing chromosome C29526\r\n", "INFO [2014-03-08 06:13:28,200] [Preprocessor.java:241] [main] Processing chromosome C29530\r\n", "Processing chromosome C29530\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:28,216] [Preprocessor.java:241] [main] Processing chromosome C29538\r\n", "Processing chromosome C29538\r\n", "INFO [2014-03-08 06:13:28,239] [Preprocessor.java:241] [main] Processing chromosome C29540\r\n", "Processing chromosome C29540\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:28,255] [Preprocessor.java:241] [main] Processing chromosome C29542\r\n", "Processing chromosome C29542\r\n", "INFO [2014-03-08 06:13:28,257] [Preprocessor.java:241] [main] Processing chromosome C29544\r\n", "Processing chromosome C29544\r\n", "INFO [2014-03-08 06:13:28,262] [Preprocessor.java:241] [main] Processing chromosome C29548\r\n", "Processing chromosome C29548\r\n", "INFO [2014-03-08 06:13:28,270] [Preprocessor.java:241] [main] Processing chromosome C29554\r\n", "Processing chromosome C29554\r\n", "INFO [2014-03-08 06:13:28,288] [Preprocessor.java:241] [main] Processing chromosome C29558\r\n", "Processing chromosome C29558\r\n", "INFO [2014-03-08 06:13:28,293] [Preprocessor.java:241] [main] Processing chromosome C29566\r\n", "Processing chromosome C29566\r\n", "INFO [2014-03-08 06:13:28,296] [Preprocessor.java:241] [main] Processing chromosome C29572\r\n", "Processing chromosome C29572\r\n", "INFO [2014-03-08 06:13:28,304] [Preprocessor.java:241] [main] Processing chromosome C29576\r\n", "Processing chromosome C29576\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:28,322] [Preprocessor.java:241] [main] Processing chromosome C29582\r\n", "Processing chromosome C29582\r\n", "INFO [2014-03-08 06:13:28,327] [Preprocessor.java:241] [main] Processing chromosome C29584\r\n", "Processing chromosome C29584\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:28,359] [Preprocessor.java:241] [main] Processing chromosome C29612\r\n", "Processing chromosome C29612\r\n", "INFO [2014-03-08 06:13:28,372] [Preprocessor.java:241] [main] Processing chromosome C29614\r\n", "Processing chromosome C29614\r\n", "INFO [2014-03-08 06:13:28,389] [Preprocessor.java:241] [main] Processing chromosome C29618\r\n", "Processing chromosome C29618\r\n", "INFO [2014-03-08 06:13:28,402] [Preprocessor.java:241] [main] Processing chromosome C29620\r\n", "Processing chromosome C29620\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:28,418] [Preprocessor.java:241] [main] Processing chromosome C29624\r\n", "Processing chromosome C29624\r\n", "INFO [2014-03-08 06:13:28,435] [Preprocessor.java:241] [main] Processing chromosome C29632\r\n", "Processing chromosome C29632\r\n", "INFO [2014-03-08 06:13:28,446] [Preprocessor.java:241] [main] Processing chromosome C29634\r\n", "Processing chromosome C29634\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:28,474] [Preprocessor.java:241] [main] Processing chromosome C29638\r\n", "Processing chromosome C29638\r\n", "INFO [2014-03-08 06:13:28,490] [Preprocessor.java:241] [main] Processing chromosome C29642\r\n", "Processing chromosome C29642\r\n", "INFO [2014-03-08 06:13:28,502] [Preprocessor.java:241] [main] Processing chromosome C29644\r\n", "Processing chromosome C29644\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:28,519] [Preprocessor.java:241] [main] Processing chromosome C29662\r\n", "Processing chromosome C29662\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:28,570] [Preprocessor.java:241] [main] Processing chromosome C29664\r\n", "Processing chromosome C29664\r\n", "INFO [2014-03-08 06:13:28,573] [Preprocessor.java:241] [main] Processing chromosome C2967\r\n", "Processing chromosome C2967\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:28,636] [Preprocessor.java:241] [main] Processing chromosome C29670\r\n", "Processing chromosome C29670\r\n", "INFO [2014-03-08 06:13:28,642] [Preprocessor.java:241] [main] Processing chromosome C29678\r\n", "Processing chromosome C29678\r\n", "INFO [2014-03-08 06:13:28,650] [Preprocessor.java:241] [main] Processing chromosome C29680\r\n", "Processing chromosome C29680\r\n", "INFO [2014-03-08 06:13:28,652] [Preprocessor.java:241] [main] Processing chromosome C29682\r\n", "Processing chromosome C29682\r\n", "INFO [2014-03-08 06:13:28,660] [Preprocessor.java:241] [main] Processing chromosome C29704\r\n", "Processing chromosome C29704\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:28,669] [Preprocessor.java:241] [main] Processing chromosome C29722\r\n", "Processing chromosome C29722\r\n", "INFO [2014-03-08 06:13:28,698] [Preprocessor.java:241] [main] Processing chromosome C29724\r\n", "Processing chromosome C29724\r\n", "INFO [2014-03-08 06:13:28,701] [Preprocessor.java:241] [main] Processing chromosome C29730\r\n", "Processing chromosome C29730\r\n", "INFO [2014-03-08 06:13:28,707] [Preprocessor.java:241] [main] Processing chromosome C29734\r\n", "Processing chromosome C29734\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:28,719] [Preprocessor.java:241] [main] Processing chromosome C29736\r\n", "Processing chromosome C29736\r\n", "INFO [2014-03-08 06:13:28,725] [Preprocessor.java:241] [main] Processing chromosome C29750\r\n", "Processing chromosome C29750\r\n", "INFO [2014-03-08 06:13:28,749] [Preprocessor.java:241] [main] Processing chromosome C29758\r\n", "Processing chromosome C29758\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:28,779] [Preprocessor.java:241] [main] Processing chromosome C29764\r\n", "Processing chromosome C29764\r\n", "INFO [2014-03-08 06:13:28,794] [Preprocessor.java:241] [main] Processing chromosome C29766\r\n", "Processing chromosome C29766\r\n", "INFO [2014-03-08 06:13:28,812] [Preprocessor.java:241] [main] Processing chromosome C29768\r\n", "Processing chromosome C29768\r\n", "INFO [2014-03-08 06:13:28,819] [Preprocessor.java:241] [main] Processing chromosome C29774\r\n", "Processing chromosome C29774\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:28,835] [Preprocessor.java:241] [main] Processing chromosome C29784\r\n", "Processing chromosome C29784\r\n", "INFO [2014-03-08 06:13:28,854] [Preprocessor.java:241] [main] Processing chromosome C29786\r\n", "Processing chromosome C29786\r\n", "INFO [2014-03-08 06:13:28,860] [Preprocessor.java:241] [main] Processing chromosome C29788\r\n", "Processing chromosome C29788\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:28,876] [Preprocessor.java:241] [main] Processing chromosome C29798\r\n", "Processing chromosome C29798\r\n", "INFO [2014-03-08 06:13:28,912] [Preprocessor.java:241] [main] Processing chromosome C29820\r\n", "Processing chromosome C29820\r\n", "INFO [2014-03-08 06:13:28,918] [Preprocessor.java:241] [main] Processing chromosome C29848\r\n", "Processing chromosome C29848\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:28,929] [Preprocessor.java:241] [main] Processing chromosome C29854\r\n", "Processing chromosome C29854\r\n", "INFO [2014-03-08 06:13:28,932] [Preprocessor.java:241] [main] Processing chromosome C29876\r\n", "Processing chromosome C29876\r\n", "INFO [2014-03-08 06:13:28,946] [Preprocessor.java:241] [main] Processing chromosome C29878\r\n", "Processing chromosome C29878\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:28,978] [Preprocessor.java:241] [main] Processing chromosome C29882\r\n", "Processing chromosome C29882\r\n", "INFO [2014-03-08 06:13:28,994] [Preprocessor.java:241] [main] Processing chromosome C29898\r\n", "Processing chromosome C29898\r\n", "INFO [2014-03-08 06:13:29,009] [Preprocessor.java:241] [main] Processing chromosome C29902\r\n", "Processing chromosome C29902\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:29,035] [Preprocessor.java:241] [main] Processing chromosome C29904\r\n", "Processing chromosome C29904\r\n", "INFO [2014-03-08 06:13:29,049] [Preprocessor.java:241] [main] Processing chromosome C29908\r\n", "Processing chromosome C29908\r\n", "INFO [2014-03-08 06:13:29,057] [Preprocessor.java:241] [main] Processing chromosome C29914\r\n", "Processing chromosome C29914\r\n", "INFO [2014-03-08 06:13:29,063] [Preprocessor.java:241] [main] Processing chromosome C29928\r\n", "Processing chromosome C29928\r\n", "INFO [2014-03-08 06:13:29,070] [Preprocessor.java:241] [main] Processing chromosome C29936\r\n", "Processing chromosome C29936\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:29,084] [Preprocessor.java:241] [main] Processing chromosome C29942\r\n", "Processing chromosome C29942\r\n", "INFO [2014-03-08 06:13:29,120] [Preprocessor.java:241] [main] Processing chromosome C29946\r\n", "Processing chromosome C29946\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:29,134] [Preprocessor.java:241] [main] Processing chromosome C29950\r\n", "Processing chromosome C29950\r\n", "INFO [2014-03-08 06:13:29,140] [Preprocessor.java:241] [main] Processing chromosome C29954\r\n", "Processing chromosome C29954\r\n", "INFO [2014-03-08 06:13:29,155] [Preprocessor.java:241] [main] Processing chromosome C29956\r\n", "Processing chromosome C29956\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:29,195] [Preprocessor.java:241] [main] Processing chromosome C29958\r\n", "Processing chromosome C29958\r\n", "INFO [2014-03-08 06:13:29,219] [Preprocessor.java:241] [main] Processing chromosome C29960\r\n", "Processing chromosome C29960\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:29,255] [Preprocessor.java:241] [main] Processing chromosome C29966\r\n", "Processing chromosome C29966\r\n", "INFO [2014-03-08 06:13:29,264] [Preprocessor.java:241] [main] Processing chromosome C29968\r\n", "Processing chromosome C29968\r\n", "INFO [2014-03-08 06:13:29,282] [Preprocessor.java:241] [main] Processing chromosome C29970\r\n", "Processing chromosome C29970\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:29,293] [Preprocessor.java:241] [main] Processing chromosome C29974\r\n", "Processing chromosome C29974\r\n", "INFO [2014-03-08 06:13:29,303] [Preprocessor.java:241] [main] Processing chromosome C29976\r\n", "Processing chromosome C29976\r\n", "INFO [2014-03-08 06:13:29,312] [Preprocessor.java:241] [main] Processing chromosome C29980\r\n", "Processing chromosome C29980\r\n", "INFO [2014-03-08 06:13:29,321] [Preprocessor.java:241] [main] Processing chromosome C29986\r\n", "Processing chromosome C29986\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:29,349] [Preprocessor.java:241] [main] Processing chromosome C29988\r\n", "Processing chromosome C29988\r\n", "INFO [2014-03-08 06:13:29,360] [Preprocessor.java:241] [main] Processing chromosome C29992\r\n", "Processing chromosome C29992\r\n", "INFO [2014-03-08 06:13:29,365] [Preprocessor.java:241] [main] Processing chromosome C29994\r\n", "Processing chromosome C29994\r\n", "INFO [2014-03-08 06:13:29,378] [Preprocessor.java:241] [main] Processing chromosome C30002\r\n", "Processing chromosome C30002\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:29,390] [Preprocessor.java:241] [main] Processing chromosome C30012\r\n", "Processing chromosome C30012\r\n", "INFO [2014-03-08 06:13:29,397] [Preprocessor.java:241] [main] Processing chromosome C30022\r\n", "Processing chromosome C30022\r\n", "INFO [2014-03-08 06:13:29,404] [Preprocessor.java:241] [main] Processing chromosome C30038\r\n", "Processing chromosome C30038\r\n", "INFO [2014-03-08 06:13:29,416] [Preprocessor.java:241] [main] Processing chromosome C30040\r\n", "Processing chromosome C30040\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:29,441] [Preprocessor.java:241] [main] Processing chromosome C30042\r\n", "Processing chromosome C30042\r\n", "INFO [2014-03-08 06:13:29,448] [Preprocessor.java:241] [main] Processing chromosome C30044\r\n", "Processing chromosome C30044\r\n", "INFO [2014-03-08 06:13:29,472] [Preprocessor.java:241] [main] Processing chromosome C30046\r\n", "Processing chromosome C30046\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:29,510] [Preprocessor.java:241] [main] Processing chromosome C30058\r\n", "Processing chromosome C30058\r\n", "INFO [2014-03-08 06:13:29,515] [Preprocessor.java:241] [main] Processing chromosome C30060\r\n", "Processing chromosome C30060\r\n", "INFO [2014-03-08 06:13:29,526] [Preprocessor.java:241] [main] Processing chromosome C30072\r\n", "Processing chromosome C30072\r\n", "INFO [2014-03-08 06:13:29,535] [Preprocessor.java:241] [main] Processing chromosome C30084\r\n", "Processing chromosome C30084\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:29,548] [Preprocessor.java:241] [main] Processing chromosome C30100\r\n", "Processing chromosome C30100\r\n", "INFO [2014-03-08 06:13:29,556] [Preprocessor.java:241] [main] Processing chromosome C30110\r\n", "Processing chromosome C30110\r\n", "INFO [2014-03-08 06:13:29,563] [Preprocessor.java:241] [main] Processing chromosome C30118\r\n", "Processing chromosome C30118\r\n", "INFO [2014-03-08 06:13:29,576] [Preprocessor.java:241] [main] Processing chromosome C30120\r\n", "Processing chromosome C30120\r\n", "INFO [2014-03-08 06:13:29,582] [Preprocessor.java:241] [main] Processing chromosome C30124\r\n", "Processing chromosome C30124\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:29,622] [Preprocessor.java:241] [main] Processing chromosome C30126\r\n", "Processing chromosome C30126\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:29,647] [Preprocessor.java:241] [main] Processing chromosome C30130\r\n", "Processing chromosome C30130\r\n", "INFO [2014-03-08 06:13:29,657] [Preprocessor.java:241] [main] Processing chromosome C30140\r\n", "Processing chromosome C30140\r\n", "INFO [2014-03-08 06:13:29,662] [Preprocessor.java:241] [main] Processing chromosome C30144\r\n", "Processing chromosome C30144\r\n", "INFO [2014-03-08 06:13:29,677] [Preprocessor.java:241] [main] Processing chromosome C30162\r\n", "Processing chromosome C30162\r\n", "INFO [2014-03-08 06:13:29,688] [Preprocessor.java:241] [main] Processing chromosome C30166\r\n", "Processing chromosome C30166\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:29,709] [Preprocessor.java:241] [main] Processing chromosome C30176\r\n", "Processing chromosome C30176\r\n", "INFO [2014-03-08 06:13:29,713] [Preprocessor.java:241] [main] Processing chromosome C30178\r\n", "Processing chromosome C30178\r\n", "INFO [2014-03-08 06:13:29,725] [Preprocessor.java:241] [main] Processing chromosome C30186\r\n", "Processing chromosome C30186\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:29,750] [Preprocessor.java:241] [main] Processing chromosome C30188\r\n", "Processing chromosome C30188\r\n", "INFO [2014-03-08 06:13:29,767] [Preprocessor.java:241] [main] Processing chromosome C30206\r\n", "Processing chromosome C30206\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:29,802] [Preprocessor.java:241] [main] Processing chromosome C30216\r\n", "Processing chromosome C30216\r\n", "INFO [2014-03-08 06:13:29,841] [Preprocessor.java:241] [main] Processing chromosome C30224\r\n", "Processing chromosome C30224\r\n", "INFO [2014-03-08 06:13:29,851] [Preprocessor.java:241] [main] Processing chromosome C30226\r\n", "Processing chromosome C30226\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:29,868] [Preprocessor.java:241] [main] Processing chromosome C30232\r\n", "Processing chromosome C30232\r\n", "INFO [2014-03-08 06:13:29,873] [Preprocessor.java:241] [main] Processing chromosome C30238\r\n", "Processing chromosome C30238\r\n", "INFO [2014-03-08 06:13:29,898] [Preprocessor.java:241] [main] Processing chromosome C30240\r\n", "Processing chromosome C30240\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:29,918] [Preprocessor.java:241] [main] Processing chromosome C30252\r\n", "Processing chromosome C30252\r\n", "INFO [2014-03-08 06:13:29,941] [Preprocessor.java:241] [main] Processing chromosome C30258\r\n", "Processing chromosome C30258\r\n", "INFO [2014-03-08 06:13:29,955] [Preprocessor.java:241] [main] Processing chromosome C30260\r\n", "Processing chromosome C30260\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:29,964] [Preprocessor.java:241] [main] Processing chromosome C30262\r\n", "Processing chromosome C30262\r\n", "INFO [2014-03-08 06:13:29,998] [Preprocessor.java:241] [main] Processing chromosome C30282\r\n", "Processing chromosome C30282\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:30,021] [Preprocessor.java:241] [main] Processing chromosome C30292\r\n", "Processing chromosome C30292\r\n", "INFO [2014-03-08 06:13:30,035] [Preprocessor.java:241] [main] Processing chromosome C30294\r\n", "Processing chromosome C30294\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:30,061] [Preprocessor.java:241] [main] Processing chromosome C30296\r\n", "Processing chromosome C30296\r\n", "INFO [2014-03-08 06:13:30,096] [Preprocessor.java:241] [main] Processing chromosome C30300\r\n", "Processing chromosome C30300\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:30,119] [Preprocessor.java:241] [main] Processing chromosome C30322\r\n", "Processing chromosome C30322\r\n", "INFO [2014-03-08 06:13:30,152] [Preprocessor.java:241] [main] Processing chromosome C30324\r\n", "Processing chromosome C30324\r\n", "INFO [2014-03-08 06:13:30,163] [Preprocessor.java:241] [main] Processing chromosome C30332\r\n", "Processing chromosome C30332\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:30,176] [Preprocessor.java:241] [main] Processing chromosome C30336\r\n", "Processing chromosome C30336\r\n", "INFO [2014-03-08 06:13:30,189] [Preprocessor.java:241] [main] Processing chromosome C30340\r\n", "Processing chromosome C30340\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:30,236] [Preprocessor.java:241] [main] Processing chromosome C30344\r\n", "Processing chromosome C30344\r\n", "INFO [2014-03-08 06:13:30,242] [Preprocessor.java:241] [main] Processing chromosome C30354\r\n", "Processing chromosome C30354\r\n", "INFO [2014-03-08 06:13:30,245] [Preprocessor.java:241] [main] Processing chromosome C30356\r\n", "Processing chromosome C30356\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:30,270] [Preprocessor.java:241] [main] Processing chromosome C30362\r\n", "Processing chromosome C30362\r\n", "INFO [2014-03-08 06:13:30,291] [Preprocessor.java:241] [main] Processing chromosome C30398\r\n", "Processing chromosome C30398\r\n", "INFO [2014-03-08 06:13:30,296] [Preprocessor.java:241] [main] Processing chromosome C30414\r\n", "Processing chromosome C30414\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:30,320] [Preprocessor.java:241] [main] Processing chromosome C30426\r\n", "Processing chromosome C30426\r\n", "INFO [2014-03-08 06:13:30,348] [Preprocessor.java:241] [main] Processing chromosome C30430\r\n", "Processing chromosome C30430\r\n", "INFO [2014-03-08 06:13:30,361] [Preprocessor.java:241] [main] Processing chromosome C30434\r\n", "Processing chromosome C30434\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:30,383] [Preprocessor.java:241] [main] Processing chromosome C30444\r\n", "Processing chromosome C30444\r\n", "INFO [2014-03-08 06:13:30,393] [Preprocessor.java:241] [main] Processing chromosome C30458\r\n", "Processing chromosome C30458\r\n", "INFO [2014-03-08 06:13:30,407] [Preprocessor.java:241] [main] Processing chromosome C30460\r\n", "Processing chromosome C30460\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:30,427] [Preprocessor.java:241] [main] Processing chromosome C30472\r\n", "Processing chromosome C30472\r\n", "INFO [2014-03-08 06:13:30,444] [Preprocessor.java:241] [main] Processing chromosome C30476\r\n", "Processing chromosome C30476\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:30,477] [Preprocessor.java:241] [main] Processing chromosome C30482\r\n", "Processing chromosome C30482\r\n", "INFO [2014-03-08 06:13:30,485] [Preprocessor.java:241] [main] Processing chromosome C30496\r\n", "Processing chromosome C30496\r\n", "INFO [2014-03-08 06:13:30,509] [Preprocessor.java:241] [main] Processing chromosome C30498\r\n", "Processing chromosome C30498\r\n", "INFO [2014-03-08 06:13:30,518] [Preprocessor.java:241] [main] Processing chromosome C30500\r\n", "Processing chromosome C30500\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:30,536] [Preprocessor.java:241] [main] Processing chromosome C30504\r\n", "Processing chromosome C30504\r\n", "INFO [2014-03-08 06:13:30,555] [Preprocessor.java:241] [main] Processing chromosome C30506\r\n", "Processing chromosome C30506\r\n", "INFO [2014-03-08 06:13:30,574] [Preprocessor.java:241] [main] Processing chromosome C30508\r\n", "Processing chromosome C30508\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:30,592] [Preprocessor.java:241] [main] Processing chromosome C30514\r\n", "Processing chromosome C30514\r\n", "INFO [2014-03-08 06:13:30,632] [Preprocessor.java:241] [main] Processing chromosome C30522\r\n", "Processing chromosome C30522\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:30,642] [Preprocessor.java:241] [main] Processing chromosome C30526\r\n", "Processing chromosome C30526\r\n", "INFO [2014-03-08 06:13:30,669] [Preprocessor.java:241] [main] Processing chromosome C30534\r\n", "Processing chromosome C30534\r\n", "INFO [2014-03-08 06:13:30,678] [Preprocessor.java:241] [main] Processing chromosome C30538\r\n", "Processing chromosome C30538\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:30,684] [Preprocessor.java:241] [main] Processing chromosome C30542\r\n", "Processing chromosome C30542\r\n", "INFO [2014-03-08 06:13:30,689] [Preprocessor.java:241] [main] Processing chromosome C30560\r\n", "Processing chromosome C30560\r\n", "INFO [2014-03-08 06:13:30,714] [Preprocessor.java:241] [main] Processing chromosome C30566\r\n", "Processing chromosome C30566\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:30,741] [Preprocessor.java:241] [main] Processing chromosome C30570\r\n", "Processing chromosome C30570\r\n", "INFO [2014-03-08 06:13:30,768] [Preprocessor.java:241] [main] Processing chromosome C30576\r\n", "Processing chromosome C30576\r\n", "INFO [2014-03-08 06:13:30,774] [Preprocessor.java:241] [main] Processing chromosome C30582\r\n", "Processing chromosome C30582\r\n", "INFO [2014-03-08 06:13:30,783] [Preprocessor.java:241] [main] Processing chromosome C30584\r\n", "Processing chromosome C30584\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:30,810] [Preprocessor.java:241] [main] Processing chromosome C30592\r\n", "Processing chromosome C30592\r\n", "INFO [2014-03-08 06:13:30,817] [Preprocessor.java:241] [main] Processing chromosome C30608\r\n", "Processing chromosome C30608\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:30,841] [Preprocessor.java:241] [main] Processing chromosome C30620\r\n", "Processing chromosome C30620\r\n", "INFO [2014-03-08 06:13:30,862] [Preprocessor.java:241] [main] Processing chromosome C30622\r\n", "Processing chromosome C30622\r\n", "INFO [2014-03-08 06:13:30,880] [Preprocessor.java:241] [main] Processing chromosome C30632\r\n", "Processing chromosome C30632\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:30,917] [Preprocessor.java:241] [main] Processing chromosome C30662\r\n", "Processing chromosome C30662\r\n", "INFO [2014-03-08 06:13:30,927] [Preprocessor.java:241] [main] Processing chromosome C30668\r\n", "Processing chromosome C30668\r\n", "INFO [2014-03-08 06:13:30,938] [Preprocessor.java:241] [main] Processing chromosome C30680\r\n", "Processing chromosome C30680\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:30,964] [Preprocessor.java:241] [main] Processing chromosome C30694\r\n", "Processing chromosome C30694\r\n", "INFO [2014-03-08 06:13:30,979] [Preprocessor.java:241] [main] Processing chromosome C30708\r\n", "Processing chromosome C30708\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:31,003] [Preprocessor.java:241] [main] Processing chromosome C30724\r\n", "Processing chromosome C30724\r\n", "INFO [2014-03-08 06:13:31,037] [Preprocessor.java:241] [main] Processing chromosome C30728\r\n", "Processing chromosome C30728\r\n", "INFO [2014-03-08 06:13:31,042] [Preprocessor.java:241] [main] Processing chromosome C30736\r\n", "Processing chromosome C30736\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:31,049] [Preprocessor.java:241] [main] Processing chromosome C30746\r\n", "Processing chromosome C30746\r\n", "INFO [2014-03-08 06:13:31,054] [Preprocessor.java:241] [main] Processing chromosome C30752\r\n", "Processing chromosome C30752\r\n", "INFO [2014-03-08 06:13:31,056] [Preprocessor.java:241] [main] Processing chromosome C30754\r\n", "Processing chromosome C30754\r\n", "INFO [2014-03-08 06:13:31,095] [Preprocessor.java:241] [main] Processing chromosome C30756\r\n", "Processing chromosome C30756\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:31,101] [Preprocessor.java:241] [main] Processing chromosome C30766\r\n", "Processing chromosome C30766\r\n", "INFO [2014-03-08 06:13:31,105] [Preprocessor.java:241] [main] Processing chromosome C30768\r\n", "Processing chromosome C30768\r\n", "INFO [2014-03-08 06:13:31,120] [Preprocessor.java:241] [main] Processing chromosome C30770\r\n", "Processing chromosome C30770\r\n", "INFO [2014-03-08 06:13:31,132] [Preprocessor.java:241] [main] Processing chromosome C30792\r\n", "Processing chromosome C30792\r\n", "INFO [2014-03-08 06:13:31,144] [Preprocessor.java:241] [main] Processing chromosome C30796\r\n", "Processing chromosome C30796\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:31,178] [Preprocessor.java:241] [main] Processing chromosome C30800\r\n", "Processing chromosome C30800\r\n", "INFO [2014-03-08 06:13:31,188] [Preprocessor.java:241] [main] Processing chromosome C30802\r\n", "Processing chromosome C30802\r\n", "INFO [2014-03-08 06:13:31,196] [Preprocessor.java:241] [main] Processing chromosome C30804\r\n", "Processing chromosome C30804\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:31,202] [Preprocessor.java:241] [main] Processing chromosome C30806\r\n", "Processing chromosome C30806\r\n", "INFO [2014-03-08 06:13:31,223] [Preprocessor.java:241] [main] Processing chromosome C30816\r\n", "Processing chromosome C30816\r\n", "INFO [2014-03-08 06:13:31,249] [Preprocessor.java:241] [main] Processing chromosome C30820\r\n", "Processing chromosome C30820\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:31,256] [Preprocessor.java:241] [main] Processing chromosome C30832\r\n", "Processing chromosome C30832\r\n", "INFO [2014-03-08 06:13:31,261] [Preprocessor.java:241] [main] Processing chromosome C30848\r\n", "Processing chromosome C30848\r\n", "INFO [2014-03-08 06:13:31,285] [Preprocessor.java:241] [main] Processing chromosome C30852\r\n", "Processing chromosome C30852\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:31,330] [Preprocessor.java:241] [main] Processing chromosome C30862\r\n", "Processing chromosome C30862\r\n", "INFO [2014-03-08 06:13:31,353] [Preprocessor.java:241] [main] Processing chromosome C30870\r\n", "Processing chromosome C30870\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:31,363] [Preprocessor.java:241] [main] Processing chromosome C30872\r\n", "Processing chromosome C30872\r\n", "INFO [2014-03-08 06:13:31,378] [Preprocessor.java:241] [main] Processing chromosome C30874\r\n", "Processing chromosome C30874\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:31,407] [Preprocessor.java:241] [main] Processing chromosome C30882\r\n", "Processing chromosome C30882\r\n", "INFO [2014-03-08 06:13:31,414] [Preprocessor.java:241] [main] Processing chromosome C30886\r\n", "Processing chromosome C30886\r\n", "INFO [2014-03-08 06:13:31,421] [Preprocessor.java:241] [main] Processing chromosome C30898\r\n", "Processing chromosome C30898\r\n", "INFO [2014-03-08 06:13:31,440] [Preprocessor.java:241] [main] Processing chromosome C30904\r\n", "Processing chromosome C30904\r\n", "INFO [2014-03-08 06:13:31,442] [Preprocessor.java:241] [main] Processing chromosome C30908\r\n", "Processing chromosome C30908\r\n", "INFO [2014-03-08 06:13:31,454] [Preprocessor.java:241] [main] Processing chromosome C30924\r\n", "Processing chromosome C30924\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:31,461] [Preprocessor.java:241] [main] Processing chromosome C30946\r\n", "Processing chromosome C30946\r\n", "INFO [2014-03-08 06:13:31,472] [Preprocessor.java:241] [main] Processing chromosome C30954\r\n", "Processing chromosome C30954\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:31,510] [Preprocessor.java:241] [main] Processing chromosome C30956\r\n", "Processing chromosome C30956\r\n", "INFO [2014-03-08 06:13:31,520] [Preprocessor.java:241] [main] Processing chromosome C30958\r\n", "Processing chromosome C30958\r\n", "INFO [2014-03-08 06:13:31,536] [Preprocessor.java:241] [main] Processing chromosome C30966\r\n", "Processing chromosome C30966\r\n", "INFO [2014-03-08 06:13:31,560] [Preprocessor.java:241] [main] Processing chromosome C30974\r\n", "Processing chromosome C30974\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:31,584] [Preprocessor.java:241] [main] Processing chromosome C30980\r\n", "Processing chromosome C30980\r\n", "INFO [2014-03-08 06:13:31,587] [Preprocessor.java:241] [main] Processing chromosome C30982\r\n", "Processing chromosome C30982\r\n", "INFO [2014-03-08 06:13:31,601] [Preprocessor.java:241] [main] Processing chromosome C30988\r\n", "Processing chromosome C30988\r\n", "INFO [2014-03-08 06:13:31,611] [Preprocessor.java:241] [main] Processing chromosome C30994\r\n", "Processing chromosome C30994\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:31,629] [Preprocessor.java:241] [main] Processing chromosome C30998\r\n", "Processing chromosome C30998\r\n", "INFO [2014-03-08 06:13:31,648] [Preprocessor.java:241] [main] Processing chromosome C31004\r\n", "Processing chromosome C31004\r\n", "INFO [2014-03-08 06:13:31,662] [Preprocessor.java:241] [main] Processing chromosome C31012\r\n", "Processing chromosome C31012\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:31,699] [Preprocessor.java:241] [main] Processing chromosome C31020\r\n", "Processing chromosome C31020\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:31,728] [Preprocessor.java:241] [main] Processing chromosome C31022\r\n", "Processing chromosome C31022\r\n", "INFO [2014-03-08 06:13:31,733] [Preprocessor.java:241] [main] Processing chromosome C31036\r\n", "Processing chromosome C31036\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:31,780] [Preprocessor.java:241] [main] Processing chromosome C31056\r\n", "Processing chromosome C31056\r\n", "INFO [2014-03-08 06:13:31,803] [Preprocessor.java:241] [main] Processing chromosome C31060\r\n", "Processing chromosome C31060\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:31,835] [Preprocessor.java:241] [main] Processing chromosome C31062\r\n", "Processing chromosome C31062\r\n", "INFO [2014-03-08 06:13:31,846] [Preprocessor.java:241] [main] Processing chromosome C31070\r\n", "Processing chromosome C31070\r\n", "INFO [2014-03-08 06:13:31,863] [Preprocessor.java:241] [main] Processing chromosome C31072\r\n", "Processing chromosome C31072\r\n", "INFO [2014-03-08 06:13:31,869] [Preprocessor.java:241] [main] Processing chromosome C31096\r\n", "Processing chromosome C31096\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:31,917] [Preprocessor.java:241] [main] Processing chromosome C31104\r\n", "Processing chromosome C31104\r\n", "INFO [2014-03-08 06:13:31,921] [Preprocessor.java:241] [main] Processing chromosome C31106\r\n", "Processing chromosome C31106\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:31,945] [Preprocessor.java:241] [main] Processing chromosome C31130\r\n", "Processing chromosome C31130\r\n", "INFO [2014-03-08 06:13:31,973] [Preprocessor.java:241] [main] Processing chromosome C31132\r\n", "Processing chromosome C31132\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:31,992] [Preprocessor.java:241] [main] Processing chromosome C31144\r\n", "Processing chromosome C31144\r\n", "INFO [2014-03-08 06:13:31,998] [Preprocessor.java:241] [main] Processing chromosome C31156\r\n", "Processing chromosome C31156\r\n", "INFO [2014-03-08 06:13:32,007] [Preprocessor.java:241] [main] Processing chromosome C3117\r\n", "Processing chromosome C3117\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:32,060] [Preprocessor.java:241] [main] Processing chromosome C31176\r\n", "Processing chromosome C31176\r\n", "INFO [2014-03-08 06:13:32,064] [Preprocessor.java:241] [main] Processing chromosome C31202\r\n", "Processing chromosome C31202\r\n", "INFO [2014-03-08 06:13:32,067] [Preprocessor.java:241] [main] Processing chromosome C31242\r\n", "Processing chromosome C31242\r\n", "INFO [2014-03-08 06:13:32,072] [Preprocessor.java:241] [main] Processing chromosome C31246\r\n", "Processing chromosome C31246\r\n", "INFO [2014-03-08 06:13:32,075] [Preprocessor.java:241] [main] Processing chromosome C31256\r\n", "Processing chromosome C31256\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:32,097] [Preprocessor.java:241] [main] Processing chromosome C31260\r\n", "Processing chromosome C31260\r\n", "INFO [2014-03-08 06:13:32,115] [Preprocessor.java:241] [main] Processing chromosome C31262\r\n", "Processing chromosome C31262\r\n", "INFO [2014-03-08 06:13:32,127] [Preprocessor.java:241] [main] Processing chromosome C31264\r\n", "Processing chromosome C31264\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:32,141] [Preprocessor.java:241] [main] Processing chromosome C31270\r\n", "Processing chromosome C31270\r\n", "INFO [2014-03-08 06:13:32,151] [Preprocessor.java:241] [main] Processing chromosome C31278\r\n", "Processing chromosome C31278\r\n", "INFO [2014-03-08 06:13:32,161] [Preprocessor.java:241] [main] Processing chromosome C31292\r\n", "Processing chromosome C31292\r\n", "INFO [2014-03-08 06:13:32,174] [Preprocessor.java:241] [main] Processing chromosome C31300\r\n", "Processing chromosome C31300\r\n", "INFO [2014-03-08 06:13:32,176] [Preprocessor.java:241] [main] Processing chromosome C31304\r\n", "Processing chromosome C31304\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:32,180] [Preprocessor.java:241] [main] Processing chromosome C31322\r\n", "Processing chromosome C31322\r\n", "INFO [2014-03-08 06:13:32,192] [Preprocessor.java:241] [main] Processing chromosome C31324\r\n", "Processing chromosome C31324\r\n", "INFO [2014-03-08 06:13:32,202] [Preprocessor.java:241] [main] Processing chromosome C31336\r\n", "Processing chromosome C31336\r\n", "INFO [2014-03-08 06:13:32,224] [Preprocessor.java:241] [main] Processing chromosome C31340\r\n", "Processing chromosome C31340\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:32,235] [Preprocessor.java:241] [main] Processing chromosome C31346\r\n", "Processing chromosome C31346\r\n", "INFO [2014-03-08 06:13:32,241] [Preprocessor.java:241] [main] Processing chromosome C31354\r\n", "Processing chromosome C31354\r\n", "INFO [2014-03-08 06:13:32,249] [Preprocessor.java:241] [main] Processing chromosome C31366\r\n", "Processing chromosome C31366\r\n", "INFO [2014-03-08 06:13:32,253] [Preprocessor.java:241] [main] Processing chromosome C3137\r\n", "Processing chromosome C3137\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:32,283] [Preprocessor.java:241] [main] Processing chromosome C31370\r\n", "Processing chromosome C31370\r\n", "INFO [2014-03-08 06:13:32,308] [Preprocessor.java:241] [main] Processing chromosome C31380\r\n", "Processing chromosome C31380\r\n", "INFO [2014-03-08 06:13:32,323] [Preprocessor.java:241] [main] Processing chromosome C31386\r\n", "Processing chromosome C31386\r\n", "INFO [2014-03-08 06:13:32,326] [Preprocessor.java:241] [main] Processing chromosome C31390\r\n", "Processing chromosome C31390\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:32,345] [Preprocessor.java:241] [main] Processing chromosome C31396\r\n", "Processing chromosome C31396\r\n", "INFO [2014-03-08 06:13:32,360] [Preprocessor.java:241] [main] Processing chromosome C31398\r\n", "Processing chromosome C31398\r\n", "INFO [2014-03-08 06:13:32,366] [Preprocessor.java:241] [main] Processing chromosome C31400\r\n", "Processing chromosome C31400\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:32,469] [Preprocessor.java:241] [main] Processing chromosome C31408\r\n", "Processing chromosome C31408\r\n", "INFO [2014-03-08 06:13:32,481] [Preprocessor.java:241] [main] Processing chromosome C31410\r\n", "Processing chromosome C31410\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:32,507] [Preprocessor.java:241] [main] Processing chromosome C31414\r\n", "Processing chromosome C31414\r\n", "INFO [2014-03-08 06:13:32,530] [Preprocessor.java:241] [main] Processing chromosome C31442\r\n", "Processing chromosome C31442\r\n", "INFO [2014-03-08 06:13:32,537] [Preprocessor.java:241] [main] Processing chromosome C31446\r\n", "Processing chromosome C31446\r\n", "INFO [2014-03-08 06:13:32,541] [Preprocessor.java:241] [main] Processing chromosome C3145\r\n", "Processing chromosome C3145\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:32,570] [Preprocessor.java:241] [main] Processing chromosome C31458\r\n", "Processing chromosome C31458\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:32,618] [Preprocessor.java:241] [main] Processing chromosome C31460\r\n", "Processing chromosome C31460\r\n", "INFO [2014-03-08 06:13:32,634] [Preprocessor.java:241] [main] Processing chromosome C31466\r\n", "Processing chromosome C31466\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:32,665] [Preprocessor.java:241] [main] Processing chromosome C31482\r\n", "Processing chromosome C31482\r\n", "INFO [2014-03-08 06:13:32,672] [Preprocessor.java:241] [main] Processing chromosome C31486\r\n", "Processing chromosome C31486\r\n", "INFO [2014-03-08 06:13:32,694] [Preprocessor.java:241] [main] Processing chromosome C31488\r\n", "Processing chromosome C31488\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:32,744] [Preprocessor.java:241] [main] Processing chromosome C31500\r\n", "Processing chromosome C31500\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:32,757] [Preprocessor.java:241] [main] Processing chromosome C31504\r\n", "Processing chromosome C31504\r\n", "INFO [2014-03-08 06:13:32,776] [Preprocessor.java:241] [main] Processing chromosome C3151\r\n", "Processing chromosome C3151\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:32,830] [Preprocessor.java:241] [main] Processing chromosome C31510\r\n", "Processing chromosome C31510\r\n", "INFO [2014-03-08 06:13:32,838] [Preprocessor.java:241] [main] Processing chromosome C31526\r\n", "Processing chromosome C31526\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:32,858] [Preprocessor.java:241] [main] Processing chromosome C31542\r\n", "Processing chromosome C31542\r\n", "INFO [2014-03-08 06:13:32,868] [Preprocessor.java:241] [main] Processing chromosome C31546\r\n", "Processing chromosome C31546\r\n", "INFO [2014-03-08 06:13:32,889] [Preprocessor.java:241] [main] Processing chromosome C31564\r\n", "Processing chromosome C31564\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:32,907] [Preprocessor.java:241] [main] Processing chromosome C31572\r\n", "Processing chromosome C31572\r\n", "INFO [2014-03-08 06:13:32,928] [Preprocessor.java:241] [main] Processing chromosome C31574\r\n", "Processing chromosome C31574\r\n", "INFO [2014-03-08 06:13:32,936] [Preprocessor.java:241] [main] Processing chromosome C31584\r\n", "Processing chromosome C31584\r\n", "INFO [2014-03-08 06:13:32,953] [Preprocessor.java:241] [main] Processing chromosome C31590\r\n", "Processing chromosome C31590\r\n", "INFO [2014-03-08 06:13:32,958] [Preprocessor.java:241] [main] Processing chromosome C31602\r\n", "Processing chromosome C31602\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:32,966] [Preprocessor.java:241] [main] Processing chromosome C31626\r\n", "Processing chromosome C31626\r\n", "INFO [2014-03-08 06:13:32,971] [Preprocessor.java:241] [main] Processing chromosome C31630\r\n", "Processing chromosome C31630\r\n", "INFO [2014-03-08 06:13:32,979] [Preprocessor.java:241] [main] Processing chromosome C31632\r\n", "Processing chromosome C31632\r\n", "INFO [2014-03-08 06:13:32,990] [Preprocessor.java:241] [main] Processing chromosome C31644\r\n", "Processing chromosome C31644\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:33,055] [Preprocessor.java:241] [main] Processing chromosome C31654\r\n", "Processing chromosome C31654\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:33,077] [Preprocessor.java:241] [main] Processing chromosome C31668\r\n", "Processing chromosome C31668\r\n", "INFO [2014-03-08 06:13:33,091] [Preprocessor.java:241] [main] Processing chromosome C31694\r\n", "Processing chromosome C31694\r\n", "INFO [2014-03-08 06:13:33,109] [Preprocessor.java:241] [main] Processing chromosome C31698\r\n", "Processing chromosome C31698\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:33,135] [Preprocessor.java:241] [main] Processing chromosome C31706\r\n", "Processing chromosome C31706\r\n", "INFO [2014-03-08 06:13:33,160] [Preprocessor.java:241] [main] Processing chromosome C31714\r\n", "Processing chromosome C31714\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:33,175] [Preprocessor.java:241] [main] Processing chromosome C31724\r\n", "Processing chromosome C31724\r\n", "INFO [2014-03-08 06:13:33,197] [Preprocessor.java:241] [main] Processing chromosome C31730\r\n", "Processing chromosome C31730\r\n", "INFO [2014-03-08 06:13:33,215] [Preprocessor.java:241] [main] Processing chromosome C31738\r\n", "Processing chromosome C31738\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:33,237] [Preprocessor.java:241] [main] Processing chromosome C31746\r\n", "Processing chromosome C31746\r\n", "INFO [2014-03-08 06:13:33,258] [Preprocessor.java:241] [main] Processing chromosome C3175\r\n", "Processing chromosome C3175\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:33,288] [Preprocessor.java:241] [main] Processing chromosome C31762\r\n", "Processing chromosome C31762\r\n", "INFO [2014-03-08 06:13:33,315] [Preprocessor.java:241] [main] Processing chromosome C31776\r\n", "Processing chromosome C31776\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:33,321] [Preprocessor.java:241] [main] Processing chromosome C31778\r\n", "Processing chromosome C31778\r\n", "INFO [2014-03-08 06:13:33,337] [Preprocessor.java:241] [main] Processing chromosome C3179\r\n", "Processing chromosome C3179\r\n", "INFO [2014-03-08 06:13:33,367] [Preprocessor.java:241] [main] Processing chromosome C31806\r\n", "Processing chromosome C31806\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:33,395] [Preprocessor.java:241] [main] Processing chromosome C31808\r\n", "Processing chromosome C31808\r\n", "INFO [2014-03-08 06:13:33,417] [Preprocessor.java:241] [main] Processing chromosome C31814\r\n", "Processing chromosome C31814\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:33,425] [Preprocessor.java:241] [main] Processing chromosome C31828\r\n", "Processing chromosome C31828\r\n", "INFO [2014-03-08 06:13:33,441] [Preprocessor.java:241] [main] Processing chromosome C3183\r\n", "Processing chromosome C3183\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:33,491] [Preprocessor.java:241] [main] Processing chromosome C31832\r\n", "Processing chromosome C31832\r\n", "INFO [2014-03-08 06:13:33,498] [Preprocessor.java:241] [main] Processing chromosome C31838\r\n", "Processing chromosome C31838\r\n", "INFO [2014-03-08 06:13:33,510] [Preprocessor.java:241] [main] Processing chromosome C31840\r\n", "Processing chromosome C31840\r\n", "INFO [2014-03-08 06:13:33,517] [Preprocessor.java:241] [main] Processing chromosome C31846\r\n", "Processing chromosome C31846\r\n", "INFO [2014-03-08 06:13:33,523] [Preprocessor.java:241] [main] Processing chromosome C31876\r\n", "Processing chromosome C31876\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:33,529] [Preprocessor.java:241] [main] Processing chromosome C31882\r\n", "Processing chromosome C31882\r\n", "INFO [2014-03-08 06:13:33,546] [Preprocessor.java:241] [main] Processing chromosome C31884\r\n", "Processing chromosome C31884\r\n", "INFO [2014-03-08 06:13:33,550] [Preprocessor.java:241] [main] Processing chromosome C31896\r\n", "Processing chromosome C31896\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:33,579] [Preprocessor.java:241] [main] Processing chromosome C31902\r\n", "Processing chromosome C31902\r\n", "INFO [2014-03-08 06:13:33,590] [Preprocessor.java:241] [main] Processing chromosome C31910\r\n", "Processing chromosome C31910\r\n", "INFO [2014-03-08 06:13:33,606] [Preprocessor.java:241] [main] Processing chromosome C31912\r\n", "Processing chromosome C31912\r\n", "INFO [2014-03-08 06:13:33,616] [Preprocessor.java:241] [main] Processing chromosome C31940\r\n", "Processing chromosome C31940\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:33,630] [Preprocessor.java:241] [main] Processing chromosome C31952\r\n", "Processing chromosome C31952\r\n", "INFO [2014-03-08 06:13:33,632] [Preprocessor.java:241] [main] Processing chromosome C31964\r\n", "Processing chromosome C31964\r\n", "INFO [2014-03-08 06:13:33,660] [Preprocessor.java:241] [main] Processing chromosome C3197\r\n", "Processing chromosome C3197\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:33,741] [Preprocessor.java:241] [main] Processing chromosome C31978\r\n", "Processing chromosome C31978\r\n", "INFO [2014-03-08 06:13:33,766] [Preprocessor.java:241] [main] Processing chromosome C31982\r\n", "Processing chromosome C31982\r\n", "INFO [2014-03-08 06:13:33,771] [Preprocessor.java:241] [main] Processing chromosome C31986\r\n", "Processing chromosome C31986\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:33,806] [Preprocessor.java:241] [main] Processing chromosome C31988\r\n", "Processing chromosome C31988\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:33,843] [Preprocessor.java:241] [main] Processing chromosome C31996\r\n", "Processing chromosome C31996\r\n", "INFO [2014-03-08 06:13:33,863] [Preprocessor.java:241] [main] Processing chromosome C32002\r\n", "Processing chromosome C32002\r\n", "INFO [2014-03-08 06:13:33,881] [Preprocessor.java:241] [main] Processing chromosome C32006\r\n", "Processing chromosome C32006\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:33,890] [Preprocessor.java:241] [main] Processing chromosome C32026\r\n", "Processing chromosome C32026\r\n", "INFO [2014-03-08 06:13:33,897] [Preprocessor.java:241] [main] Processing chromosome C32028\r\n", "Processing chromosome C32028\r\n", "INFO [2014-03-08 06:13:33,901] [Preprocessor.java:241] [main] Processing chromosome C32054\r\n", "Processing chromosome C32054\r\n", "INFO [2014-03-08 06:13:33,905] [Preprocessor.java:241] [main] Processing chromosome C32056\r\n", "Processing chromosome C32056\r\n", "INFO [2014-03-08 06:13:33,921] [Preprocessor.java:241] [main] Processing chromosome C32082\r\n", "Processing chromosome C32082\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:33,942] [Preprocessor.java:241] [main] Processing chromosome C32084\r\n", "Processing chromosome C32084\r\n", "INFO [2014-03-08 06:13:33,984] [Preprocessor.java:241] [main] Processing chromosome C32088\r\n", "Processing chromosome C32088\r\n", "INFO [2014-03-08 06:13:33,990] [Preprocessor.java:241] [main] Processing chromosome C32098\r\n", "Processing chromosome C32098\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:34,005] [Preprocessor.java:241] [main] Processing chromosome C32106\r\n", "Processing chromosome C32106\r\n", "INFO [2014-03-08 06:13:34,013] [Preprocessor.java:241] [main] Processing chromosome C32108\r\n", "Processing chromosome C32108\r\n", "INFO [2014-03-08 06:13:34,020] [Preprocessor.java:241] [main] Processing chromosome C32110\r\n", "Processing chromosome C32110\r\n", "INFO [2014-03-08 06:13:34,040] [Preprocessor.java:241] [main] Processing chromosome C32122\r\n", "Processing chromosome C32122\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:34,048] [Preprocessor.java:241] [main] Processing chromosome C32130\r\n", "Processing chromosome C32130\r\n", "INFO [2014-03-08 06:13:34,050] [Preprocessor.java:241] [main] Processing chromosome C32136\r\n", "Processing chromosome C32136\r\n", "INFO [2014-03-08 06:13:34,066] [Preprocessor.java:241] [main] Processing chromosome C32150\r\n", "Processing chromosome C32150\r\n", "INFO [2014-03-08 06:13:34,070] [Preprocessor.java:241] [main] Processing chromosome C32156\r\n", "Processing chromosome C32156\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:34,108] [Preprocessor.java:241] [main] Processing chromosome C32176\r\n", "Processing chromosome C32176\r\n", "INFO [2014-03-08 06:13:34,120] [Preprocessor.java:241] [main] Processing chromosome C32184\r\n", "Processing chromosome C32184\r\n", "INFO [2014-03-08 06:13:34,132] [Preprocessor.java:241] [main] Processing chromosome C32186\r\n", "Processing chromosome C32186\r\n", "INFO [2014-03-08 06:13:34,138] [Preprocessor.java:241] [main] Processing chromosome C32196\r\n", "Processing chromosome C32196\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:34,169] [Preprocessor.java:241] [main] Processing chromosome C32216\r\n", "Processing chromosome C32216\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:34,241] [Preprocessor.java:241] [main] Processing chromosome C32222\r\n", "Processing chromosome C32222\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:34,262] [Preprocessor.java:241] [main] Processing chromosome C32224\r\n", "Processing chromosome C32224\r\n", "INFO [2014-03-08 06:13:34,288] [Preprocessor.java:241] [main] Processing chromosome C32228\r\n", "Processing chromosome C32228\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:34,303] [Preprocessor.java:241] [main] Processing chromosome C32240\r\n", "Processing chromosome C32240\r\n", "INFO [2014-03-08 06:13:34,321] [Preprocessor.java:241] [main] Processing chromosome C32242\r\n", "Processing chromosome C32242\r\n", "INFO [2014-03-08 06:13:34,331] [Preprocessor.java:241] [main] Processing chromosome C32246\r\n", "Processing chromosome C32246\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:34,352] [Preprocessor.java:241] [main] Processing chromosome C3225\r\n", "Processing chromosome C3225\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:34,684] [Preprocessor.java:241] [main] Processing chromosome C32260\r\n", "Processing chromosome C32260\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:34,714] [Preprocessor.java:241] [main] Processing chromosome C32264\r\n", "Processing chromosome C32264\r\n", "INFO [2014-03-08 06:13:34,733] [Preprocessor.java:241] [main] Processing chromosome C32270\r\n", "Processing chromosome C32270\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:34,746] [Preprocessor.java:241] [main] Processing chromosome C32272\r\n", "Processing chromosome C32272\r\n", "INFO [2014-03-08 06:13:34,761] [Preprocessor.java:241] [main] Processing chromosome C32276\r\n", "Processing chromosome C32276\r\n", "INFO [2014-03-08 06:13:34,777] [Preprocessor.java:241] [main] Processing chromosome C32278\r\n", "Processing chromosome C32278\r\n", "INFO [2014-03-08 06:13:34,782] [Preprocessor.java:241] [main] Processing chromosome C32292\r\n", "Processing chromosome C32292\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:34,804] [Preprocessor.java:241] [main] Processing chromosome C3231\r\n", "Processing chromosome C3231\r\n", "INFO [2014-03-08 06:13:34,835] [Preprocessor.java:241] [main] Processing chromosome C32314\r\n", "Processing chromosome C32314\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:34,867] [Preprocessor.java:241] [main] Processing chromosome C32318\r\n", "Processing chromosome C32318\r\n", "INFO [2014-03-08 06:13:34,874] [Preprocessor.java:241] [main] Processing chromosome C32328\r\n", "Processing chromosome C32328\r\n", "INFO [2014-03-08 06:13:34,887] [Preprocessor.java:241] [main] Processing chromosome C32340\r\n", "Processing chromosome C32340\r\n", "INFO [2014-03-08 06:13:34,890] [Preprocessor.java:241] [main] Processing chromosome C32382\r\n", "Processing chromosome C32382\r\n", "INFO [2014-03-08 06:13:34,892] [Preprocessor.java:241] [main] Processing chromosome C32390\r\n", "Processing chromosome C32390\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:34,902] [Preprocessor.java:241] [main] Processing chromosome C32398\r\n", "Processing chromosome C32398\r\n", "INFO [2014-03-08 06:13:34,913] [Preprocessor.java:241] [main] Processing chromosome C32402\r\n", "Processing chromosome C32402\r\n", "INFO [2014-03-08 06:13:34,933] [Preprocessor.java:241] [main] Processing chromosome C32406\r\n", "Processing chromosome C32406\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:34,961] [Preprocessor.java:241] [main] Processing chromosome C32424\r\n", "Processing chromosome C32424\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:35,006] [Preprocessor.java:241] [main] Processing chromosome C32426\r\n", "Processing chromosome C32426\r\n", "INFO [2014-03-08 06:13:35,040] [Preprocessor.java:241] [main] Processing chromosome C32438\r\n", "Processing chromosome C32438\r\n", "INFO [2014-03-08 06:13:35,050] [Preprocessor.java:241] [main] Processing chromosome C32444\r\n", "Processing chromosome C32444\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:35,076] [Preprocessor.java:241] [main] Processing chromosome C32458\r\n", "Processing chromosome C32458\r\n", "INFO [2014-03-08 06:13:35,079] [Preprocessor.java:241] [main] Processing chromosome C32468\r\n", "Processing chromosome C32468\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:35,110] [Preprocessor.java:241] [main] Processing chromosome C32472\r\n", "Processing chromosome C32472\r\n", "INFO [2014-03-08 06:13:35,120] [Preprocessor.java:241] [main] Processing chromosome C32482\r\n", "Processing chromosome C32482\r\n", "INFO [2014-03-08 06:13:35,131] [Preprocessor.java:241] [main] Processing chromosome C32484\r\n", "Processing chromosome C32484\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:35,164] [Preprocessor.java:241] [main] Processing chromosome C3249\r\n", "Processing chromosome C3249\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:35,221] [Preprocessor.java:241] [main] Processing chromosome C32512\r\n", "Processing chromosome C32512\r\n", "INFO [2014-03-08 06:13:35,253] [Preprocessor.java:241] [main] Processing chromosome C32516\r\n", "Processing chromosome C32516\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:35,267] [Preprocessor.java:241] [main] Processing chromosome C32532\r\n", "Processing chromosome C32532\r\n", "INFO [2014-03-08 06:13:35,286] [Preprocessor.java:241] [main] Processing chromosome C32536\r\n", "Processing chromosome C32536\r\n", "INFO [2014-03-08 06:13:35,302] [Preprocessor.java:241] [main] Processing chromosome C32542\r\n", "Processing chromosome C32542\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:35,340] [Preprocessor.java:241] [main] Processing chromosome C32552\r\n", "Processing chromosome C32552\r\n", "INFO [2014-03-08 06:13:35,368] [Preprocessor.java:241] [main] Processing chromosome C32554\r\n", "Processing chromosome C32554\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:35,388] [Preprocessor.java:241] [main] Processing chromosome C32568\r\n", "Processing chromosome C32568\r\n", "INFO [2014-03-08 06:13:35,412] [Preprocessor.java:241] [main] Processing chromosome C32576\r\n", "Processing chromosome C32576\r\n", "INFO [2014-03-08 06:13:35,421] [Preprocessor.java:241] [main] Processing chromosome C32578\r\n", "Processing chromosome C32578\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:35,438] [Preprocessor.java:241] [main] Processing chromosome C32582\r\n", "Processing chromosome C32582\r\n", "INFO [2014-03-08 06:13:35,441] [Preprocessor.java:241] [main] Processing chromosome C32596\r\n", "Processing chromosome C32596\r\n", "INFO [2014-03-08 06:13:35,464] [Preprocessor.java:241] [main] Processing chromosome C32606\r\n", "Processing chromosome C32606\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:35,491] [Preprocessor.java:241] [main] Processing chromosome C3261\r\n", "Processing chromosome C3261\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:35,548] [Preprocessor.java:241] [main] Processing chromosome C32614\r\n", "Processing chromosome C32614\r\n", "INFO [2014-03-08 06:13:35,568] [Preprocessor.java:241] [main] Processing chromosome C32636\r\n", "Processing chromosome C32636\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:35,592] [Preprocessor.java:241] [main] Processing chromosome C32644\r\n", "Processing chromosome C32644\r\n", "INFO [2014-03-08 06:13:35,600] [Preprocessor.java:241] [main] Processing chromosome C32654\r\n", "Processing chromosome C32654\r\n", "INFO [2014-03-08 06:13:35,634] [Preprocessor.java:241] [main] Processing chromosome C32656\r\n", "Processing chromosome C32656\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:35,666] [Preprocessor.java:241] [main] Processing chromosome C32660\r\n", "Processing chromosome C32660\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:35,692] [Preprocessor.java:241] [main] Processing chromosome C32674\r\n", "Processing chromosome C32674\r\n", "INFO [2014-03-08 06:13:35,698] [Preprocessor.java:241] [main] Processing chromosome C32682\r\n", "Processing chromosome C32682\r\n", "INFO [2014-03-08 06:13:35,709] [Preprocessor.java:241] [main] Processing chromosome C32694\r\n", "Processing chromosome C32694\r\n", "INFO [2014-03-08 06:13:35,722] [Preprocessor.java:241] [main] Processing chromosome C32714\r\n", "Processing chromosome C32714\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:35,760] [Preprocessor.java:241] [main] Processing chromosome C32728\r\n", "Processing chromosome C32728\r\n", "INFO [2014-03-08 06:13:35,767] [Preprocessor.java:241] [main] Processing chromosome C32748\r\n", "Processing chromosome C32748\r\n", "INFO [2014-03-08 06:13:35,771] [Preprocessor.java:241] [main] Processing chromosome C32772\r\n", "Processing chromosome C32772\r\n", "INFO [2014-03-08 06:13:35,773] [Preprocessor.java:241] [main] Processing chromosome C32774\r\n", "Processing chromosome C32774\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:35,796] [Preprocessor.java:241] [main] Processing chromosome C32778\r\n", "Processing chromosome C32778\r\n", "INFO [2014-03-08 06:13:35,802] [Preprocessor.java:241] [main] Processing chromosome C32794\r\n", "Processing chromosome C32794\r\n", "INFO [2014-03-08 06:13:35,804] [Preprocessor.java:241] [main] Processing chromosome C32810\r\n", "Processing chromosome C32810\r\n", "INFO [2014-03-08 06:13:35,820] [Preprocessor.java:241] [main] Processing chromosome C32812\r\n", "Processing chromosome C32812\r\n", "INFO [2014-03-08 06:13:35,835] [Preprocessor.java:241] [main] Processing chromosome C32814\r\n", "Processing chromosome C32814\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:35,868] [Preprocessor.java:241] [main] Processing chromosome C32818\r\n", "Processing chromosome C32818\r\n", "INFO [2014-03-08 06:13:35,873] [Preprocessor.java:241] [main] Processing chromosome C32838\r\n", "Processing chromosome C32838\r\n", "INFO [2014-03-08 06:13:35,879] [Preprocessor.java:241] [main] Processing chromosome C32842\r\n", "Processing chromosome C32842\r\n", "INFO [2014-03-08 06:13:35,891] [Preprocessor.java:241] [main] Processing chromosome C32848\r\n", "Processing chromosome C32848\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:35,909] [Preprocessor.java:241] [main] Processing chromosome C32884\r\n", "Processing chromosome C32884\r\n", "INFO [2014-03-08 06:13:35,925] [Preprocessor.java:241] [main] Processing chromosome C32888\r\n", "Processing chromosome C32888\r\n", "INFO [2014-03-08 06:13:35,934] [Preprocessor.java:241] [main] Processing chromosome C32906\r\n", "Processing chromosome C32906\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:35,960] [Preprocessor.java:241] [main] Processing chromosome C32914\r\n", "Processing chromosome C32914\r\n", "INFO [2014-03-08 06:13:35,965] [Preprocessor.java:241] [main] Processing chromosome C32918\r\n", "Processing chromosome C32918\r\n", "INFO [2014-03-08 06:13:35,974] [Preprocessor.java:241] [main] Processing chromosome C32930\r\n", "Processing chromosome C32930\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:36,004] [Preprocessor.java:241] [main] Processing chromosome C32966\r\n", "Processing chromosome C32966\r\n", "INFO [2014-03-08 06:13:36,012] [Preprocessor.java:241] [main] Processing chromosome C32974\r\n", "Processing chromosome C32974\r\n", "INFO [2014-03-08 06:13:36,016] [Preprocessor.java:241] [main] Processing chromosome C32984\r\n", "Processing chromosome C32984\r\n", "INFO [2014-03-08 06:13:36,033] [Preprocessor.java:241] [main] Processing chromosome C32986\r\n", "Processing chromosome C32986\r\n", "INFO [2014-03-08 06:13:36,049] [Preprocessor.java:241] [main] Processing chromosome C32992\r\n", "Processing chromosome C32992\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:36,073] [Preprocessor.java:241] [main] Processing chromosome C32994\r\n", "Processing chromosome C32994\r\n", "INFO [2014-03-08 06:13:36,097] [Preprocessor.java:241] [main] Processing chromosome C33024\r\n", "Processing chromosome C33024\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:36,102] [Preprocessor.java:241] [main] Processing chromosome C33038\r\n", "Processing chromosome C33038\r\n", "INFO [2014-03-08 06:13:36,108] [Preprocessor.java:241] [main] Processing chromosome C33084\r\n", "Processing chromosome C33084\r\n", "INFO [2014-03-08 06:13:36,118] [Preprocessor.java:241] [main] Processing chromosome C33102\r\n", "Processing chromosome C33102\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:36,159] [Preprocessor.java:241] [main] Processing chromosome C33126\r\n", "Processing chromosome C33126\r\n", "INFO [2014-03-08 06:13:36,170] [Preprocessor.java:241] [main] Processing chromosome C33128\r\n", "Processing chromosome C33128\r\n", "INFO [2014-03-08 06:13:36,199] [Preprocessor.java:241] [main] Processing chromosome C33136\r\n", "Processing chromosome C33136\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:36,220] [Preprocessor.java:241] [main] Processing chromosome C33148\r\n", "Processing chromosome C33148\r\n", "INFO [2014-03-08 06:13:36,246] [Preprocessor.java:241] [main] Processing chromosome C33162\r\n", "Processing chromosome C33162\r\n", "INFO [2014-03-08 06:13:36,251] [Preprocessor.java:241] [main] Processing chromosome C33172\r\n", "Processing chromosome C33172\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:36,261] [Preprocessor.java:241] [main] Processing chromosome C33174\r\n", "Processing chromosome C33174\r\n", "INFO [2014-03-08 06:13:36,267] [Preprocessor.java:241] [main] Processing chromosome C33176\r\n", "Processing chromosome C33176\r\n", "INFO [2014-03-08 06:13:36,268] [Preprocessor.java:241] [main] Processing chromosome C33182\r\n", "Processing chromosome C33182\r\n", "INFO [2014-03-08 06:13:36,275] [Preprocessor.java:241] [main] Processing chromosome C33188\r\n", "Processing chromosome C33188\r\n", "INFO [2014-03-08 06:13:36,284] [Preprocessor.java:241] [main] Processing chromosome C33200\r\n", "Processing chromosome C33200\r\n", "INFO [2014-03-08 06:13:36,298] [Preprocessor.java:241] [main] Processing chromosome C33204\r\n", "Processing chromosome C33204\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:36,309] [Preprocessor.java:241] [main] Processing chromosome C33220\r\n", "Processing chromosome C33220\r\n", "INFO [2014-03-08 06:13:36,338] [Preprocessor.java:241] [main] Processing chromosome C33222\r\n", "Processing chromosome C33222\r\n", "INFO [2014-03-08 06:13:36,343] [Preprocessor.java:241] [main] Processing chromosome C33230\r\n", "Processing chromosome C33230\r\n", "INFO [2014-03-08 06:13:36,355] [Preprocessor.java:241] [main] Processing chromosome C33236\r\n", "Processing chromosome C33236\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:36,372] [Preprocessor.java:241] [main] Processing chromosome C33244\r\n", "Processing chromosome C33244\r\n", "INFO [2014-03-08 06:13:36,397] [Preprocessor.java:241] [main] Processing chromosome C33256\r\n", "Processing chromosome C33256\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:36,414] [Preprocessor.java:241] [main] Processing chromosome C33260\r\n", "Processing chromosome C33260\r\n", "INFO [2014-03-08 06:13:36,438] [Preprocessor.java:241] [main] Processing chromosome C33308\r\n", "Processing chromosome C33308\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:36,461] [Preprocessor.java:241] [main] Processing chromosome C33310\r\n", "Processing chromosome C33310\r\n", "INFO [2014-03-08 06:13:36,481] [Preprocessor.java:241] [main] Processing chromosome C33320\r\n", "Processing chromosome C33320\r\n", "INFO [2014-03-08 06:13:36,497] [Preprocessor.java:241] [main] Processing chromosome C33332\r\n", "Processing chromosome C33332\r\n", "INFO [2014-03-08 06:13:36,502] [Preprocessor.java:241] [main] Processing chromosome C33368\r\n", "Processing chromosome C33368\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:36,519] [Preprocessor.java:241] [main] Processing chromosome C33378\r\n", "Processing chromosome C33378\r\n", "INFO [2014-03-08 06:13:36,537] [Preprocessor.java:241] [main] Processing chromosome C33408\r\n", "Processing chromosome C33408\r\n", "INFO [2014-03-08 06:13:36,555] [Preprocessor.java:241] [main] Processing chromosome C33436\r\n", "Processing chromosome C33436\r\n", "INFO [2014-03-08 06:13:36,562] [Preprocessor.java:241] [main] Processing chromosome C33442\r\n", "Processing chromosome C33442\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:36,579] [Preprocessor.java:241] [main] Processing chromosome C3345\r\n", "Processing chromosome C3345\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:36,622] [Preprocessor.java:241] [main] Processing chromosome C33464\r\n", "Processing chromosome C33464\r\n", "INFO [2014-03-08 06:13:36,662] [Preprocessor.java:241] [main] Processing chromosome C33472\r\n", "Processing chromosome C33472\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:36,683] [Preprocessor.java:241] [main] Processing chromosome C33478\r\n", "Processing chromosome C33478\r\n", "INFO [2014-03-08 06:13:36,702] [Preprocessor.java:241] [main] Processing chromosome C33482\r\n", "Processing chromosome C33482\r\n", "INFO [2014-03-08 06:13:36,705] [Preprocessor.java:241] [main] Processing chromosome C33496\r\n", "Processing chromosome C33496\r\n", "INFO [2014-03-08 06:13:36,707] [Preprocessor.java:241] [main] Processing chromosome C33510\r\n", "Processing chromosome C33510\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:36,733] [Preprocessor.java:241] [main] Processing chromosome C33524\r\n", "Processing chromosome C33524\r\n", "INFO [2014-03-08 06:13:36,741] [Preprocessor.java:241] [main] Processing chromosome C3353\r\n", "Processing chromosome C3353\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:36,770] [Preprocessor.java:241] [main] Processing chromosome C33534\r\n", "Processing chromosome C33534\r\n", "INFO [2014-03-08 06:13:36,801] [Preprocessor.java:241] [main] Processing chromosome C33560\r\n", "Processing chromosome C33560\r\n", "INFO [2014-03-08 06:13:36,805] [Preprocessor.java:241] [main] Processing chromosome C33576\r\n", "Processing chromosome C33576\r\n", "INFO [2014-03-08 06:13:36,814] [Preprocessor.java:241] [main] Processing chromosome C33580\r\n", "Processing chromosome C33580\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:36,828] [Preprocessor.java:241] [main] Processing chromosome C33592\r\n", "Processing chromosome C33592\r\n", "INFO [2014-03-08 06:13:36,850] [Preprocessor.java:241] [main] Processing chromosome C3361\r\n", "Processing chromosome C3361\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:36,904] [Preprocessor.java:241] [main] Processing chromosome C33614\r\n", "Processing chromosome C33614\r\n", "INFO [2014-03-08 06:13:36,912] [Preprocessor.java:241] [main] Processing chromosome C33646\r\n", "Processing chromosome C33646\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:36,930] [Preprocessor.java:241] [main] Processing chromosome C33654\r\n", "Processing chromosome C33654\r\n", "INFO [2014-03-08 06:13:36,946] [Preprocessor.java:241] [main] Processing chromosome C33658\r\n", "Processing chromosome C33658\r\n", "INFO [2014-03-08 06:13:36,965] [Preprocessor.java:241] [main] Processing chromosome C33664\r\n", "Processing chromosome C33664\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:37,009] [Preprocessor.java:241] [main] Processing chromosome C33666\r\n", "Processing chromosome C33666\r\n", "INFO [2014-03-08 06:13:37,026] [Preprocessor.java:241] [main] Processing chromosome C33688\r\n", "Processing chromosome C33688\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:37,059] [Preprocessor.java:241] [main] Processing chromosome C33708\r\n", "Processing chromosome C33708\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:37,091] [Preprocessor.java:241] [main] Processing chromosome C33730\r\n", "Processing chromosome C33730\r\n", "INFO [2014-03-08 06:13:37,109] [Preprocessor.java:241] [main] Processing chromosome C33734\r\n", "Processing chromosome C33734\r\n", "INFO [2014-03-08 06:13:37,129] [Preprocessor.java:241] [main] Processing chromosome C33748\r\n", "Processing chromosome C33748\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:37,159] [Preprocessor.java:241] [main] Processing chromosome C33762\r\n", "Processing chromosome C33762\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:37,196] [Preprocessor.java:241] [main] Processing chromosome C33776\r\n", "Processing chromosome C33776\r\n", "INFO [2014-03-08 06:13:37,206] [Preprocessor.java:241] [main] Processing chromosome C33812\r\n", "Processing chromosome C33812\r\n", "INFO [2014-03-08 06:13:37,228] [Preprocessor.java:241] [main] Processing chromosome C33864\r\n", "Processing chromosome C33864\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:37,242] [Preprocessor.java:241] [main] Processing chromosome C33892\r\n", "Processing chromosome C33892\r\n", "INFO [2014-03-08 06:13:37,262] [Preprocessor.java:241] [main] Processing chromosome C33918\r\n", "Processing chromosome C33918\r\n", "INFO [2014-03-08 06:13:37,271] [Preprocessor.java:241] [main] Processing chromosome C33952\r\n", "Processing chromosome C33952\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:37,294] [Preprocessor.java:241] [main] Processing chromosome C34010\r\n", "Processing chromosome C34010\r\n", "INFO [2014-03-08 06:13:37,328] [Preprocessor.java:241] [main] Processing chromosome C34066\r\n", "Processing chromosome C34066\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:37,351] [Preprocessor.java:241] [main] Processing chromosome C3407\r\n", "Processing chromosome C3407\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:37,402] [Preprocessor.java:241] [main] Processing chromosome C34072\r\n", "Processing chromosome C34072\r\n", "INFO [2014-03-08 06:13:37,413] [Preprocessor.java:241] [main] Processing chromosome C34104\r\n", "Processing chromosome C34104\r\n", "INFO [2014-03-08 06:13:37,422] [Preprocessor.java:241] [main] Processing chromosome C34110\r\n", "Processing chromosome C34110\r\n", "INFO [2014-03-08 06:13:37,429] [Preprocessor.java:241] [main] Processing chromosome C34112\r\n", "Processing chromosome C34112\r\n", "INFO [2014-03-08 06:13:37,433] [Preprocessor.java:241] [main] Processing chromosome C34116\r\n", "Processing chromosome C34116\r\n", "INFO [2014-03-08 06:13:37,439] [Preprocessor.java:241] [main] Processing chromosome C34120\r\n", "Processing chromosome C34120\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:37,445] [Preprocessor.java:241] [main] Processing chromosome C34122\r\n", "Processing chromosome C34122\r\n", "INFO [2014-03-08 06:13:37,459] [Preprocessor.java:241] [main] Processing chromosome C34136\r\n", "Processing chromosome C34136\r\n", "INFO [2014-03-08 06:13:37,483] [Preprocessor.java:241] [main] Processing chromosome C34158\r\n", "Processing chromosome C34158\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:37,527] [Preprocessor.java:241] [main] Processing chromosome C34160\r\n", "Processing chromosome C34160\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:37,561] [Preprocessor.java:241] [main] Processing chromosome C34166\r\n", "Processing chromosome C34166\r\n", "INFO [2014-03-08 06:13:37,584] [Preprocessor.java:241] [main] Processing chromosome C34174\r\n", "Processing chromosome C34174\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:37,602] [Preprocessor.java:241] [main] Processing chromosome C34176\r\n", "Processing chromosome C34176\r\n", "INFO [2014-03-08 06:13:37,623] [Preprocessor.java:241] [main] Processing chromosome C3419\r\n", "Processing chromosome C3419\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:37,653] [Preprocessor.java:241] [main] Processing chromosome C34200\r\n", "Processing chromosome C34200\r\n", "INFO [2014-03-08 06:13:37,691] [Preprocessor.java:241] [main] Processing chromosome C34208\r\n", "Processing chromosome C34208\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:37,707] [Preprocessor.java:241] [main] Processing chromosome C34218\r\n", "Processing chromosome C34218\r\n", "INFO [2014-03-08 06:13:37,719] [Preprocessor.java:241] [main] Processing chromosome C34226\r\n", "Processing chromosome C34226\r\n", "INFO [2014-03-08 06:13:37,733] [Preprocessor.java:241] [main] Processing chromosome C34250\r\n", "Processing chromosome C34250\r\n", "INFO [2014-03-08 06:13:37,749] [Preprocessor.java:241] [main] Processing chromosome C34256\r\n", "Processing chromosome C34256\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:37,784] [Preprocessor.java:241] [main] Processing chromosome C34270\r\n", "Processing chromosome C34270\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:37,830] [Preprocessor.java:241] [main] Processing chromosome C34272\r\n", "Processing chromosome C34272\r\n", "INFO [2014-03-08 06:13:37,835] [Preprocessor.java:241] [main] Processing chromosome C34274\r\n", "Processing chromosome C34274\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:37,876] [Preprocessor.java:241] [main] Processing chromosome C34286\r\n", "Processing chromosome C34286\r\n", "INFO [2014-03-08 06:13:37,904] [Preprocessor.java:241] [main] Processing chromosome C34288\r\n", "Processing chromosome C34288\r\n", "INFO [2014-03-08 06:13:37,909] [Preprocessor.java:241] [main] Processing chromosome C34300\r\n", "Processing chromosome C34300\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:37,926] [Preprocessor.java:241] [main] Processing chromosome C34310\r\n", "Processing chromosome C34310\r\n", "INFO [2014-03-08 06:13:37,940] [Preprocessor.java:241] [main] Processing chromosome C34320\r\n", "Processing chromosome C34320\r\n", "INFO [2014-03-08 06:13:37,962] [Preprocessor.java:241] [main] Processing chromosome C34340\r\n", "Processing chromosome C34340\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:37,999] [Preprocessor.java:241] [main] Processing chromosome C34372\r\n", "Processing chromosome C34372\r\n", "INFO [2014-03-08 06:13:38,010] [Preprocessor.java:241] [main] Processing chromosome C34402\r\n", "Processing chromosome C34402\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:38,020] [Preprocessor.java:241] [main] Processing chromosome C34406\r\n", "Processing chromosome C34406\r\n", "INFO [2014-03-08 06:13:38,030] [Preprocessor.java:241] [main] Processing chromosome C34408\r\n", "Processing chromosome C34408\r\n", "INFO [2014-03-08 06:13:38,034] [Preprocessor.java:241] [main] Processing chromosome C34418\r\n", "Processing chromosome C34418\r\n", "INFO [2014-03-08 06:13:38,057] [Preprocessor.java:241] [main] Processing chromosome C34436\r\n", "Processing chromosome C34436\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:38,081] [Preprocessor.java:241] [main] Processing chromosome C34444\r\n", "Processing chromosome C34444\r\n", "INFO [2014-03-08 06:13:38,100] [Preprocessor.java:241] [main] Processing chromosome C34458\r\n", "Processing chromosome C34458\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:38,118] [Preprocessor.java:241] [main] Processing chromosome C34464\r\n", "Processing chromosome C34464\r\n", "INFO [2014-03-08 06:13:38,143] [Preprocessor.java:241] [main] Processing chromosome C34466\r\n", "Processing chromosome C34466\r\n", "INFO [2014-03-08 06:13:38,151] [Preprocessor.java:241] [main] Processing chromosome C34488\r\n", "Processing chromosome C34488\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:38,174] [Preprocessor.java:241] [main] Processing chromosome C34496\r\n", "Processing chromosome C34496\r\n", "INFO [2014-03-08 06:13:38,177] [Preprocessor.java:241] [main] Processing chromosome C34516\r\n", "Processing chromosome C34516\r\n", "INFO [2014-03-08 06:13:38,184] [Preprocessor.java:241] [main] Processing chromosome C34546\r\n", "Processing chromosome C34546\r\n", "INFO [2014-03-08 06:13:38,201] [Preprocessor.java:241] [main] Processing chromosome C34550\r\n", "Processing chromosome C34550\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:38,234] [Preprocessor.java:241] [main] Processing chromosome C34552\r\n", "Processing chromosome C34552\r\n", "INFO [2014-03-08 06:13:38,265] [Preprocessor.java:241] [main] Processing chromosome C34556\r\n", "Processing chromosome C34556\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:38,279] [Preprocessor.java:241] [main] Processing chromosome C34562\r\n", "Processing chromosome C34562\r\n", "INFO [2014-03-08 06:13:38,288] [Preprocessor.java:241] [main] Processing chromosome C34564\r\n", "Processing chromosome C34564\r\n", "INFO [2014-03-08 06:13:38,299] [Preprocessor.java:241] [main] Processing chromosome C34566\r\n", "Processing chromosome C34566\r\n", "INFO [2014-03-08 06:13:38,306] [Preprocessor.java:241] [main] Processing chromosome C34600\r\n", "Processing chromosome C34600\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:38,345] [Preprocessor.java:241] [main] Processing chromosome C34622\r\n", "Processing chromosome C34622\r\n", "INFO [2014-03-08 06:13:38,366] [Preprocessor.java:241] [main] Processing chromosome C34630\r\n", "Processing chromosome C34630\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:38,410] [Preprocessor.java:241] [main] Processing chromosome C34634\r\n", "Processing chromosome C34634\r\n", "INFO [2014-03-08 06:13:38,416] [Preprocessor.java:241] [main] Processing chromosome C34636\r\n", "Processing chromosome C34636\r\n", "INFO [2014-03-08 06:13:38,427] [Preprocessor.java:241] [main] Processing chromosome C34708\r\n", "Processing chromosome C34708\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:38,440] [Preprocessor.java:241] [main] Processing chromosome C34712\r\n", "Processing chromosome C34712\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:38,500] [Preprocessor.java:241] [main] Processing chromosome C34726\r\n", "Processing chromosome C34726\r\n", "INFO [2014-03-08 06:13:38,515] [Preprocessor.java:241] [main] Processing chromosome C34792\r\n", "Processing chromosome C34792\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:38,532] [Preprocessor.java:241] [main] Processing chromosome C34798\r\n", "Processing chromosome C34798\r\n", "INFO [2014-03-08 06:13:38,562] [Preprocessor.java:241] [main] Processing chromosome C34804\r\n", "Processing chromosome C34804\r\n", "INFO [2014-03-08 06:13:38,569] [Preprocessor.java:241] [main] Processing chromosome C34846\r\n", "Processing chromosome C34846\r\n", "INFO [2014-03-08 06:13:38,573] [Preprocessor.java:241] [main] Processing chromosome C34856\r\n", "Processing chromosome C34856\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:38,586] [Preprocessor.java:241] [main] Processing chromosome C34876\r\n", "Processing chromosome C34876\r\n", "INFO [2014-03-08 06:13:38,597] [Preprocessor.java:241] [main] Processing chromosome C34884\r\n", "Processing chromosome C34884\r\n", "INFO [2014-03-08 06:13:38,611] [Preprocessor.java:241] [main] Processing chromosome C349\r\n", "Processing chromosome C349\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:38,665] [Preprocessor.java:241] [main] Processing chromosome C34902\r\n", "Processing chromosome C34902\r\n", "INFO [2014-03-08 06:13:38,683] [Preprocessor.java:241] [main] Processing chromosome C34948\r\n", "Processing chromosome C34948\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:38,712] [Preprocessor.java:241] [main] Processing chromosome C35006\r\n", "Processing chromosome C35006\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:38,740] [Preprocessor.java:241] [main] Processing chromosome C35028\r\n", "Processing chromosome C35028\r\n", "INFO [2014-03-08 06:13:38,759] [Preprocessor.java:241] [main] Processing chromosome C35042\r\n", "Processing chromosome C35042\r\n", "INFO [2014-03-08 06:13:38,783] [Preprocessor.java:241] [main] Processing chromosome C35068\r\n", "Processing chromosome C35068\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:38,794] [Preprocessor.java:241] [main] Processing chromosome C35134\r\n", "Processing chromosome C35134\r\n", "INFO [2014-03-08 06:13:38,802] [Preprocessor.java:241] [main] Processing chromosome C35160\r\n", "Processing chromosome C35160\r\n", "INFO [2014-03-08 06:13:38,807] [Preprocessor.java:241] [main] Processing chromosome C35168\r\n", "Processing chromosome C35168\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:38,849] [Preprocessor.java:241] [main] Processing chromosome C35172\r\n", "Processing chromosome C35172\r\n", "INFO [2014-03-08 06:13:38,879] [Preprocessor.java:241] [main] Processing chromosome C35260\r\n", "Processing chromosome C35260\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:38,902] [Preprocessor.java:241] [main] Processing chromosome C35262\r\n", "Processing chromosome C35262\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:38,965] [Preprocessor.java:241] [main] Processing chromosome C35282\r\n", "Processing chromosome C35282\r\n", "INFO [2014-03-08 06:13:38,992] [Preprocessor.java:241] [main] Processing chromosome C35386\r\n", "Processing chromosome C35386\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:39,013] [Preprocessor.java:241] [main] Processing chromosome C35400\r\n", "Processing chromosome C35400\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:39,054] [Preprocessor.java:241] [main] Processing chromosome C35502\r\n", "Processing chromosome C35502\r\n", "INFO [2014-03-08 06:13:39,058] [Preprocessor.java:241] [main] Processing chromosome C3553\r\n", "Processing chromosome C3553\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:39,116] [Preprocessor.java:241] [main] Processing chromosome C35532\r\n", "Processing chromosome C35532\r\n", "INFO [2014-03-08 06:13:39,130] [Preprocessor.java:241] [main] Processing chromosome C35548\r\n", "Processing chromosome C35548\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:39,159] [Preprocessor.java:241] [main] Processing chromosome C35556\r\n", "Processing chromosome C35556\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:39,210] [Preprocessor.java:241] [main] Processing chromosome C35564\r\n", "Processing chromosome C35564\r\n", "INFO [2014-03-08 06:13:39,223] [Preprocessor.java:241] [main] Processing chromosome C35606\r\n", "Processing chromosome C35606\r\n", "INFO [2014-03-08 06:13:39,228] [Preprocessor.java:241] [main] Processing chromosome C35642\r\n", "Processing chromosome C35642\r\n", "INFO [2014-03-08 06:13:39,232] [Preprocessor.java:241] [main] Processing chromosome C35646\r\n", "Processing chromosome C35646\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:39,261] [Preprocessor.java:241] [main] Processing chromosome C35716\r\n", "Processing chromosome C35716\r\n", "INFO [2014-03-08 06:13:39,275] [Preprocessor.java:241] [main] Processing chromosome C35760\r\n", "Processing chromosome C35760\r\n", "INFO [2014-03-08 06:13:39,290] [Preprocessor.java:241] [main] Processing chromosome C3577\r\n", "Processing chromosome C3577\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:39,352] [Preprocessor.java:241] [main] Processing chromosome C35776\r\n", "Processing chromosome C35776\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:39,393] [Preprocessor.java:241] [main] Processing chromosome C35786\r\n", "Processing chromosome C35786\r\n", "INFO [2014-03-08 06:13:39,410] [Preprocessor.java:241] [main] Processing chromosome C3579\r\n", "Processing chromosome C3579\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:39,440] [Preprocessor.java:241] [main] Processing chromosome C35794\r\n", "Processing chromosome C35794\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:39,485] [Preprocessor.java:241] [main] Processing chromosome C35840\r\n", "Processing chromosome C35840\r\n", "INFO [2014-03-08 06:13:39,494] [Preprocessor.java:241] [main] Processing chromosome C35844\r\n", "Processing chromosome C35844\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:39,528] [Preprocessor.java:241] [main] Processing chromosome C35952\r\n", "Processing chromosome C35952\r\n", "INFO [2014-03-08 06:13:39,541] [Preprocessor.java:241] [main] Processing chromosome C35992\r\n", "Processing chromosome C35992\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:39,576] [Preprocessor.java:241] [main] Processing chromosome C36014\r\n", "Processing chromosome C36014\r\n", "INFO [2014-03-08 06:13:39,600] [Preprocessor.java:241] [main] Processing chromosome C36028\r\n", "Processing chromosome C36028\r\n", "INFO [2014-03-08 06:13:39,617] [Preprocessor.java:241] [main] Processing chromosome C36038\r\n", "Processing chromosome C36038\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:39,635] [Preprocessor.java:241] [main] Processing chromosome C361\r\n", "Processing chromosome C361\r\n", "INFO [2014-03-08 06:13:39,667] [Preprocessor.java:241] [main] Processing chromosome C3611\r\n", "Processing chromosome C3611\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:39,718] [Preprocessor.java:241] [main] Processing chromosome C36172\r\n", "Processing chromosome C36172\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:39,771] [Preprocessor.java:241] [main] Processing chromosome C3627\r\n", "Processing chromosome C3627\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:39,827] [Preprocessor.java:241] [main] Processing chromosome C363\r\n", "Processing chromosome C363\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:39,903] [Preprocessor.java:241] [main] Processing chromosome C36322\r\n", "Processing chromosome C36322\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:39,943] [Preprocessor.java:241] [main] Processing chromosome C3645\r\n", "Processing chromosome C3645\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:39,997] [Preprocessor.java:241] [main] Processing chromosome C3647\r\n", "Processing chromosome C3647\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:40,054] [Preprocessor.java:241] [main] Processing chromosome C365\r\n", "Processing chromosome C365\r\n", "INFO [2014-03-08 06:13:40,086] [Preprocessor.java:241] [main] Processing chromosome C3655\r\n", "Processing chromosome C3655\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:40,140] [Preprocessor.java:241] [main] Processing chromosome C36636\r\n", "Processing chromosome C36636\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:40,206] [Preprocessor.java:241] [main] Processing chromosome C36680\r\n", "Processing chromosome C36680\r\n", "INFO [2014-03-08 06:13:40,237] [Preprocessor.java:241] [main] Processing chromosome C37024\r\n", "Processing chromosome C37024\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:40,311] [Preprocessor.java:241] [main] Processing chromosome C371\r\n", "Processing chromosome C371\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:40,367] [Preprocessor.java:241] [main] Processing chromosome C3721\r\n", "Processing chromosome C3721\r\n", "INFO [2014-03-08 06:13:40,397] [Preprocessor.java:241] [main] Processing chromosome C3725\r\n", "Processing chromosome C3725\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:40,446] [Preprocessor.java:241] [main] Processing chromosome C37392\r\n", "Processing chromosome C37392\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:40,538] [Preprocessor.java:241] [main] Processing chromosome C375\r\n", "Processing chromosome C375\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:40,593] [Preprocessor.java:241] [main] Processing chromosome C381\r\n", "Processing chromosome C381\r\n", "INFO [2014-03-08 06:13:40,625] [Preprocessor.java:241] [main] Processing chromosome C3823\r\n", "Processing chromosome C3823\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:40,680] [Preprocessor.java:241] [main] Processing chromosome C3835\r\n", "Processing chromosome C3835\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:40,762] [Preprocessor.java:241] [main] Processing chromosome C3847\r\n", "Processing chromosome C3847\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:40,825] [Preprocessor.java:241] [main] Processing chromosome C3851\r\n", "Processing chromosome C3851\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:40,879] [Preprocessor.java:241] [main] Processing chromosome C3863\r\n", "Processing chromosome C3863\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:40,933] [Preprocessor.java:241] [main] Processing chromosome C3873\r\n", "Processing chromosome C3873\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:40,967] [Preprocessor.java:241] [main] Processing chromosome C3911\r\n", "Processing chromosome C3911\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:41,063] [Preprocessor.java:241] [main] Processing chromosome C3915\r\n", "Processing chromosome C3915\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:41,126] [Preprocessor.java:241] [main] Processing chromosome C3965\r\n", "Processing chromosome C3965\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:41,178] [Preprocessor.java:241] [main] Processing chromosome C4017\r\n", "Processing chromosome C4017\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:41,262] [Preprocessor.java:241] [main] Processing chromosome C4021\r\n", "Processing chromosome C4021\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:41,296] [Preprocessor.java:241] [main] Processing chromosome C4031\r\n", "Processing chromosome C4031\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:41,348] [Preprocessor.java:241] [main] Processing chromosome C4037\r\n", "Processing chromosome C4037\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:41,433] [Preprocessor.java:241] [main] Processing chromosome C4057\r\n", "Processing chromosome C4057\r\n", "INFO [2014-03-08 06:13:41,466] [Preprocessor.java:241] [main] Processing chromosome C415\r\n", "Processing chromosome C415\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:41,516] [Preprocessor.java:241] [main] Processing chromosome C4237\r\n", "Processing chromosome C4237\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:41,567] [Preprocessor.java:241] [main] Processing chromosome C4243\r\n", "Processing chromosome C4243\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:41,684] [Preprocessor.java:241] [main] Processing chromosome C4261\r\n", "Processing chromosome C4261\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:41,715] [Preprocessor.java:241] [main] Processing chromosome C4287\r\n", "Processing chromosome C4287\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:41,766] [Preprocessor.java:241] [main] Processing chromosome C4291\r\n", "Processing chromosome C4291\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:41,845] [Preprocessor.java:241] [main] Processing chromosome C4305\r\n", "Processing chromosome C4305\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:41,903] [Preprocessor.java:241] [main] Processing chromosome C4315\r\n", "Processing chromosome C4315\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:41,965] [Preprocessor.java:241] [main] Processing chromosome C4323\r\n", "Processing chromosome C4323\r\n", "INFO [2014-03-08 06:13:41,996] [Preprocessor.java:241] [main] Processing chromosome C4331\r\n", "Processing chromosome C4331\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:42,046] [Preprocessor.java:241] [main] Processing chromosome C4333\r\n", "Processing chromosome C4333\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:42,097] [Preprocessor.java:241] [main] Processing chromosome C4417\r\n", "Processing chromosome C4417\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:42,211] [Preprocessor.java:241] [main] Processing chromosome C4425\r\n", "Processing chromosome C4425\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:42,273] [Preprocessor.java:241] [main] Processing chromosome C4429\r\n", "Processing chromosome C4429\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:42,334] [Preprocessor.java:241] [main] Processing chromosome C4431\r\n", "Processing chromosome C4431\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:42,399] [Preprocessor.java:241] [main] Processing chromosome C4433\r\n", "Processing chromosome C4433\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:42,436] [Preprocessor.java:241] [main] Processing chromosome C4449\r\n", "Processing chromosome C4449\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:42,519] [Preprocessor.java:241] [main] Processing chromosome C4465\r\n", "Processing chromosome C4465\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:42,550] [Preprocessor.java:241] [main] Processing chromosome C4517\r\n", "Processing chromosome C4517\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:42,621] [Preprocessor.java:241] [main] Processing chromosome C4535\r\n", "Processing chromosome C4535\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:42,765] [Preprocessor.java:241] [main] Processing chromosome C4671\r\n", "Processing chromosome C4671\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:42,801] [Preprocessor.java:241] [main] Processing chromosome C4689\r\n", "Processing chromosome C4689\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:42,853] [Preprocessor.java:241] [main] Processing chromosome C4695\r\n", "Processing chromosome C4695\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:42,929] [Preprocessor.java:241] [main] Processing chromosome C4697\r\n", "Processing chromosome C4697\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:42,961] [Preprocessor.java:241] [main] Processing chromosome C4701\r\n", "Processing chromosome C4701\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:43,012] [Preprocessor.java:241] [main] Processing chromosome C4705\r\n", "Processing chromosome C4705\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:43,096] [Preprocessor.java:241] [main] Processing chromosome C4729\r\n", "Processing chromosome C4729\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:43,155] [Preprocessor.java:241] [main] Processing chromosome C4759\r\n", "Processing chromosome C4759\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:43,214] [Preprocessor.java:241] [main] Processing chromosome C4769\r\n", "Processing chromosome C4769\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:43,293] [Preprocessor.java:241] [main] Processing chromosome C4773\r\n", "Processing chromosome C4773\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:43,343] [Preprocessor.java:241] [main] Processing chromosome C4867\r\n", "Processing chromosome C4867\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:43,401] [Preprocessor.java:241] [main] Processing chromosome C4873\r\n", "Processing chromosome C4873\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:43,458] [Preprocessor.java:241] [main] Processing chromosome C4875\r\n", "Processing chromosome C4875\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:43,489] [Preprocessor.java:241] [main] Processing chromosome C4883\r\n", "Processing chromosome C4883\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:43,568] [Preprocessor.java:241] [main] Processing chromosome C4893\r\n", "Processing chromosome C4893\r\n", "INFO [2014-03-08 06:13:43,600] [Preprocessor.java:241] [main] Processing chromosome C4901\r\n", "Processing chromosome C4901\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:43,651] [Preprocessor.java:241] [main] Processing chromosome C4907\r\n", "Processing chromosome C4907\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:43,723] [Preprocessor.java:241] [main] Processing chromosome C4955\r\n", "Processing chromosome C4955\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:43,788] [Preprocessor.java:241] [main] Processing chromosome C4969\r\n", "Processing chromosome C4969\r\n", "INFO [2014-03-08 06:13:43,819] [Preprocessor.java:241] [main] Processing chromosome C5077\r\n", "Processing chromosome C5077\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:43,891] [Preprocessor.java:241] [main] Processing chromosome C5105\r\n", "Processing chromosome C5105\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:43,922] [Preprocessor.java:241] [main] Processing chromosome C5135\r\n", "Processing chromosome C5135\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:43,997] [Preprocessor.java:241] [main] Processing chromosome C5149\r\n", "Processing chromosome C5149\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:44,030] [Preprocessor.java:241] [main] Processing chromosome C5169\r\n", "Processing chromosome C5169\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:44,108] [Preprocessor.java:241] [main] Processing chromosome C5183\r\n", "Processing chromosome C5183\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:44,164] [Preprocessor.java:241] [main] Processing chromosome C5187\r\n", "Processing chromosome C5187\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:44,252] [Preprocessor.java:241] [main] Processing chromosome C5189\r\n", "Processing chromosome C5189\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:44,331] [Preprocessor.java:241] [main] Processing chromosome C5201\r\n", "Processing chromosome C5201\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:44,390] [Preprocessor.java:241] [main] Processing chromosome C5203\r\n", "Processing chromosome C5203\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:44,443] [Preprocessor.java:241] [main] Processing chromosome C523\r\n", "Processing chromosome C523\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:44,473] [Preprocessor.java:241] [main] Processing chromosome C5325\r\n", "Processing chromosome C5325\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:44,545] [Preprocessor.java:241] [main] Processing chromosome C5333\r\n", "Processing chromosome C5333\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:44,602] [Preprocessor.java:241] [main] Processing chromosome C5335\r\n", "Processing chromosome C5335\r\n", "INFO [2014-03-08 06:13:44,634] [Preprocessor.java:241] [main] Processing chromosome C5363\r\n", "Processing chromosome C5363\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:44,684] [Preprocessor.java:241] [main] Processing chromosome C5405\r\n", "Processing chromosome C5405\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:44,821] [Preprocessor.java:241] [main] Processing chromosome C5411\r\n", "Processing chromosome C5411\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:44,877] [Preprocessor.java:241] [main] Processing chromosome C5423\r\n", "Processing chromosome C5423\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:44,940] [Preprocessor.java:241] [main] Processing chromosome C5429\r\n", "Processing chromosome C5429\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:44,972] [Preprocessor.java:241] [main] Processing chromosome C5445\r\n", "Processing chromosome C5445\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:45,051] [Preprocessor.java:241] [main] Processing chromosome C5545\r\n", "Processing chromosome C5545\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:45,108] [Preprocessor.java:241] [main] Processing chromosome C5557\r\n", "Processing chromosome C5557\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:45,177] [Preprocessor.java:241] [main] Processing chromosome C5565\r\n", "Processing chromosome C5565\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:45,232] [Preprocessor.java:241] [main] Processing chromosome C5567\r\n", "Processing chromosome C5567\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:45,318] [Preprocessor.java:241] [main] Processing chromosome C5573\r\n", "Processing chromosome C5573\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:45,369] [Preprocessor.java:241] [main] Processing chromosome C5593\r\n", "Processing chromosome C5593\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:45,452] [Preprocessor.java:241] [main] Processing chromosome C5607\r\n", "Processing chromosome C5607\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:45,505] [Preprocessor.java:241] [main] Processing chromosome C5657\r\n", "Processing chromosome C5657\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:45,558] [Preprocessor.java:241] [main] Processing chromosome C5677\r\n", "Processing chromosome C5677\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:45,588] [Preprocessor.java:241] [main] Processing chromosome C5679\r\n", "Processing chromosome C5679\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:45,666] [Preprocessor.java:241] [main] Processing chromosome C571\r\n", "Processing chromosome C571\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:45,698] [Preprocessor.java:241] [main] Processing chromosome C5771\r\n", "Processing chromosome C5771\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:45,772] [Preprocessor.java:241] [main] Processing chromosome C5775\r\n", "Processing chromosome C5775\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:45,845] [Preprocessor.java:241] [main] Processing chromosome C5777\r\n", "Processing chromosome C5777\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:45,899] [Preprocessor.java:241] [main] Processing chromosome C5785\r\n", "Processing chromosome C5785\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:45,931] [Preprocessor.java:241] [main] Processing chromosome C5819\r\n", "Processing chromosome C5819\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:46,007] [Preprocessor.java:241] [main] Processing chromosome C5827\r\n", "Processing chromosome C5827\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:46,038] [Preprocessor.java:241] [main] Processing chromosome C5847\r\n", "Processing chromosome C5847\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:46,116] [Preprocessor.java:241] [main] Processing chromosome C5853\r\n", "Processing chromosome C5853\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:46,173] [Preprocessor.java:241] [main] Processing chromosome C5877\r\n", "Processing chromosome C5877\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:46,204] [Preprocessor.java:241] [main] Processing chromosome C593\r\n", "Processing chromosome C593\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:46,315] [Preprocessor.java:241] [main] Processing chromosome C6015\r\n", "Processing chromosome C6015\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:46,378] [Preprocessor.java:241] [main] Processing chromosome C6041\r\n", "Processing chromosome C6041\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:46,411] [Preprocessor.java:241] [main] Processing chromosome C6057\r\n", "Processing chromosome C6057\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:46,461] [Preprocessor.java:241] [main] Processing chromosome C6067\r\n", "Processing chromosome C6067\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:46,510] [Preprocessor.java:241] [main] Processing chromosome C6107\r\n", "Processing chromosome C6107\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:46,587] [Preprocessor.java:241] [main] Processing chromosome C6117\r\n", "Processing chromosome C6117\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:46,640] [Preprocessor.java:241] [main] Processing chromosome C6123\r\n", "Processing chromosome C6123\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:46,671] [Preprocessor.java:241] [main] Processing chromosome C617\r\n", "Processing chromosome C617\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:46,721] [Preprocessor.java:241] [main] Processing chromosome C6187\r\n", "Processing chromosome C6187\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:46,775] [Preprocessor.java:241] [main] Processing chromosome C6207\r\n", "Processing chromosome C6207\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:46,825] [Preprocessor.java:241] [main] Processing chromosome C6215\r\n", "Processing chromosome C6215\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:46,898] [Preprocessor.java:241] [main] Processing chromosome C623\r\n", "Processing chromosome C623\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:46,952] [Preprocessor.java:241] [main] Processing chromosome C6265\r\n", "Processing chromosome C6265\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:47,017] [Preprocessor.java:241] [main] Processing chromosome C6269\r\n", "Processing chromosome C6269\r\n", "INFO [2014-03-08 06:13:47,049] [Preprocessor.java:241] [main] Processing chromosome C6275\r\n", "Processing chromosome C6275\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:47,134] [Preprocessor.java:241] [main] Processing chromosome C6277\r\n", "Processing chromosome C6277\r\n", "INFO [2014-03-08 06:13:47,163] [Preprocessor.java:241] [main] Processing chromosome C6283\r\n", "Processing chromosome C6283\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:47,244] [Preprocessor.java:241] [main] Processing chromosome C6337\r\n", "Processing chromosome C6337\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:47,324] [Preprocessor.java:241] [main] Processing chromosome C6363\r\n", "Processing chromosome C6363\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:47,354] [Preprocessor.java:241] [main] Processing chromosome C6369\r\n", "Processing chromosome C6369\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:47,407] [Preprocessor.java:241] [main] Processing chromosome C6379\r\n", "Processing chromosome C6379\r\n", "INFO [2014-03-08 06:13:47,427] [Preprocessor.java:241] [main] Processing chromosome C6381\r\n", "Processing chromosome C6381\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:47,459] [Preprocessor.java:241] [main] Processing chromosome C6383\r\n", "Processing chromosome C6383\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:47,491] [Preprocessor.java:241] [main] Processing chromosome C6387\r\n", "Processing chromosome C6387\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:47,538] [Preprocessor.java:241] [main] Processing chromosome C6399\r\n", "Processing chromosome C6399\r\n", "INFO [2014-03-08 06:13:47,576] [Preprocessor.java:241] [main] Processing chromosome C6401\r\n", "Processing chromosome C6401\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:47,619] [Preprocessor.java:241] [main] Processing chromosome C6441\r\n", "Processing chromosome C6441\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:47,661] [Preprocessor.java:241] [main] Processing chromosome C6459\r\n", "Processing chromosome C6459\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:47,723] [Preprocessor.java:241] [main] Processing chromosome C6563\r\n", "Processing chromosome C6563\r\n", "INFO [2014-03-08 06:13:47,742] [Preprocessor.java:241] [main] Processing chromosome C6589\r\n", "Processing chromosome C6589\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:47,789] [Preprocessor.java:241] [main] Processing chromosome C6599\r\n", "Processing chromosome C6599\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:47,824] [Preprocessor.java:241] [main] Processing chromosome C6601\r\n", "Processing chromosome C6601\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:47,864] [Preprocessor.java:241] [main] Processing chromosome C6625\r\n", "Processing chromosome C6625\r\n", "INFO [2014-03-08 06:13:47,897] [Preprocessor.java:241] [main] Processing chromosome C6637\r\n", "Processing chromosome C6637\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:47,931] [Preprocessor.java:241] [main] Processing chromosome C6643\r\n", "Processing chromosome C6643\r\n", "INFO [2014-03-08 06:13:47,951] [Preprocessor.java:241] [main] Processing chromosome C671\r\n", "Processing chromosome C671\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:48,017] [Preprocessor.java:241] [main] Processing chromosome C6727\r\n", "Processing chromosome C6727\r\n", "INFO [2014-03-08 06:13:48,036] [Preprocessor.java:241] [main] Processing chromosome C6735\r\n", "Processing chromosome C6735\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:48,095] [Preprocessor.java:241] [main] Processing chromosome C6759\r\n", "Processing chromosome C6759\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:48,115] [Preprocessor.java:241] [main] Processing chromosome C6787\r\n", "Processing chromosome C6787\r\n", "INFO [2014-03-08 06:13:48,161] [Preprocessor.java:241] [main] Processing chromosome C6807\r\n", "Processing chromosome C6807\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:48,212] [Preprocessor.java:241] [main] Processing chromosome C6811\r\n", "Processing chromosome C6811\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:48,247] [Preprocessor.java:241] [main] Processing chromosome C6841\r\n", "Processing chromosome C6841\r\n", "INFO [2014-03-08 06:13:48,267] [Preprocessor.java:241] [main] Processing chromosome C6911\r\n", "Processing chromosome C6911\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:48,313] [Preprocessor.java:241] [main] Processing chromosome C6927\r\n", "Processing chromosome C6927\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:48,353] [Preprocessor.java:241] [main] Processing chromosome C6933\r\n", "Processing chromosome C6933\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:48,393] [Preprocessor.java:241] [main] Processing chromosome C6937\r\n", "Processing chromosome C6937\r\n", "INFO [2014-03-08 06:13:48,416] [Preprocessor.java:241] [main] Processing chromosome C6965\r\n", "Processing chromosome C6965\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:48,447] [Preprocessor.java:241] [main] Processing chromosome C6989\r\n", "Processing chromosome C6989\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:48,480] [Preprocessor.java:241] [main] Processing chromosome C699\r\n", "Processing chromosome C699\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:48,543] [Preprocessor.java:241] [main] Processing chromosome C7003\r\n", "Processing chromosome C7003\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:48,582] [Preprocessor.java:241] [main] Processing chromosome C7015\r\n", "Processing chromosome C7015\r\n", "INFO [2014-03-08 06:13:48,602] [Preprocessor.java:241] [main] Processing chromosome C7019\r\n", "Processing chromosome C7019\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:48,666] [Preprocessor.java:241] [main] Processing chromosome C705\r\n", "Processing chromosome C705\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:48,717] [Preprocessor.java:241] [main] Processing chromosome C7083\r\n", "Processing chromosome C7083\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:48,755] [Preprocessor.java:241] [main] Processing chromosome C7095\r\n", "Processing chromosome C7095\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:48,797] [Preprocessor.java:241] [main] Processing chromosome C7115\r\n", "Processing chromosome C7115\r\n", "INFO [2014-03-08 06:13:48,817] [Preprocessor.java:241] [main] Processing chromosome C7141\r\n", "Processing chromosome C7141\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:48,874] [Preprocessor.java:241] [main] Processing chromosome C7145\r\n", "Processing chromosome C7145\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:48,917] [Preprocessor.java:241] [main] Processing chromosome C7147\r\n", "Processing chromosome C7147\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:48,959] [Preprocessor.java:241] [main] Processing chromosome C7257\r\n", "Processing chromosome C7257\r\n", "INFO [2014-03-08 06:13:48,979] [Preprocessor.java:241] [main] Processing chromosome C7277\r\n", "Processing chromosome C7277\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:49,028] [Preprocessor.java:241] [main] Processing chromosome C7283\r\n", "Processing chromosome C7283\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:49,049] [Preprocessor.java:241] [main] Processing chromosome C7303\r\n", "Processing chromosome C7303\r\n", "INFO [2014-03-08 06:13:49,095] [Preprocessor.java:241] [main] Processing chromosome C7307\r\n", "Processing chromosome C7307\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:49,160] [Preprocessor.java:241] [main] Processing chromosome C7327\r\n", "Processing chromosome C7327\r\n", "INFO [2014-03-08 06:13:49,196] [Preprocessor.java:241] [main] Processing chromosome C7333\r\n", "Processing chromosome C7333\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:49,242] [Preprocessor.java:241] [main] Processing chromosome C7343\r\n", "Processing chromosome C7343\r\n", "INFO [2014-03-08 06:13:49,261] [Preprocessor.java:241] [main] Processing chromosome C7453\r\n", "Processing chromosome C7453\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:49,307] [Preprocessor.java:241] [main] Processing chromosome C7457\r\n", "Processing chromosome C7457\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:49,326] [Preprocessor.java:241] [main] Processing chromosome C7473\r\n", "Processing chromosome C7473\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:49,372] [Preprocessor.java:241] [main] Processing chromosome C7499\r\n", "Processing chromosome C7499\r\n", "INFO [2014-03-08 06:13:49,410] [Preprocessor.java:241] [main] Processing chromosome C7511\r\n", "Processing chromosome C7511\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:49,425] [Preprocessor.java:241] [main] Processing chromosome C7531\r\n", "Processing chromosome C7531\r\n", "INFO [2014-03-08 06:13:49,454] [Preprocessor.java:241] [main] Processing chromosome C7621\r\n", "Processing chromosome C7621\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:49,504] [Preprocessor.java:241] [main] Processing chromosome C7639\r\n", "Processing chromosome C7639\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:49,524] [Preprocessor.java:241] [main] Processing chromosome C7659\r\n", "Processing chromosome C7659\r\n", "INFO [2014-03-08 06:13:49,555] [Preprocessor.java:241] [main] Processing chromosome C7661\r\n", "Processing chromosome C7661\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:49,603] [Preprocessor.java:241] [main] Processing chromosome C7785\r\n", "Processing chromosome C7785\r\n", "INFO [2014-03-08 06:13:49,623] [Preprocessor.java:241] [main] Processing chromosome C7787\r\n", "Processing chromosome C7787\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:49,666] [Preprocessor.java:241] [main] Processing chromosome C7791\r\n", "Processing chromosome C7791\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:49,720] [Preprocessor.java:241] [main] Processing chromosome C7793\r\n", "Processing chromosome C7793\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:49,739] [Preprocessor.java:241] [main] Processing chromosome C7797\r\n", "Processing chromosome C7797\r\n", "INFO [2014-03-08 06:13:49,772] [Preprocessor.java:241] [main] Processing chromosome C7799\r\n", "Processing chromosome C7799\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:49,804] [Preprocessor.java:241] [main] Processing chromosome C7811\r\n", "Processing chromosome C7811\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:49,835] [Preprocessor.java:241] [main] Processing chromosome C7845\r\n", "Processing chromosome C7845\r\n", "INFO [2014-03-08 06:13:49,867] [Preprocessor.java:241] [main] Processing chromosome C785\r\n", "Processing chromosome C785\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:49,910] [Preprocessor.java:241] [main] Processing chromosome C7855\r\n", "Processing chromosome C7855\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:49,971] [Preprocessor.java:241] [main] Processing chromosome C7875\r\n", "Processing chromosome C7875\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:50,005] [Preprocessor.java:241] [main] Processing chromosome C7891\r\n", "Processing chromosome C7891\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:50,038] [Preprocessor.java:241] [main] Processing chromosome C7899\r\n", "Processing chromosome C7899\r\n", "INFO [2014-03-08 06:13:50,057] [Preprocessor.java:241] [main] Processing chromosome C7993\r\n", "Processing chromosome C7993\r\n", "INFO [2014-03-08 06:13:50,090] [Preprocessor.java:241] [main] Processing chromosome C7999\r\n", "Processing chromosome C7999\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:50,164] [Preprocessor.java:241] [main] Processing chromosome C8003\r\n", "Processing chromosome C8003\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:50,199] [Preprocessor.java:241] [main] Processing chromosome C8005\r\n", "Processing chromosome C8005\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:50,243] [Preprocessor.java:241] [main] Processing chromosome C8031\r\n", "Processing chromosome C8031\r\n", "INFO [2014-03-08 06:13:50,280] [Preprocessor.java:241] [main] Processing chromosome C8037\r\n", "Processing chromosome C8037\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:50,299] [Preprocessor.java:241] [main] Processing chromosome C807\r\n", "Processing chromosome C807\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:50,364] [Preprocessor.java:241] [main] Processing chromosome C8113\r\n", "Processing chromosome C8113\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:50,405] [Preprocessor.java:241] [main] Processing chromosome C8125\r\n", "Processing chromosome C8125\r\n", "INFO [2014-03-08 06:13:50,438] [Preprocessor.java:241] [main] Processing chromosome C8133\r\n", "Processing chromosome C8133\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:50,457] [Preprocessor.java:241] [main] Processing chromosome C8153\r\n", "Processing chromosome C8153\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:50,511] [Preprocessor.java:241] [main] Processing chromosome C8159\r\n", "Processing chromosome C8159\r\n", "INFO [2014-03-08 06:13:50,543] [Preprocessor.java:241] [main] Processing chromosome C8167\r\n", "Processing chromosome C8167\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:50,563] [Preprocessor.java:241] [main] Processing chromosome C8177\r\n", "Processing chromosome C8177\r\n", "INFO [2014-03-08 06:13:50,595] [Preprocessor.java:241] [main] Processing chromosome C8205\r\n", "Processing chromosome C8205\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:50,633] [Preprocessor.java:241] [main] Processing chromosome C8231\r\n", "Processing chromosome C8231\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:50,679] [Preprocessor.java:241] [main] Processing chromosome C827\r\n", "Processing chromosome C827\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:50,710] [Preprocessor.java:241] [main] Processing chromosome C8281\r\n", "Processing chromosome C8281\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:50,780] [Preprocessor.java:241] [main] Processing chromosome C8283\r\n", "Processing chromosome C8283\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:50,832] [Preprocessor.java:241] [main] Processing chromosome C8293\r\n", "Processing chromosome C8293\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:50,872] [Preprocessor.java:241] [main] Processing chromosome C8303\r\n", "Processing chromosome C8303\r\n", "INFO [2014-03-08 06:13:50,912] [Preprocessor.java:241] [main] Processing chromosome C8315\r\n", "Processing chromosome C8315\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:50,958] [Preprocessor.java:241] [main] Processing chromosome C8339\r\n", "Processing chromosome C8339\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:50,994] [Preprocessor.java:241] [main] Processing chromosome C8363\r\n", "Processing chromosome C8363\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:51,030] [Preprocessor.java:241] [main] Processing chromosome C8365\r\n", "Processing chromosome C8365\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:51,071] [Preprocessor.java:241] [main] Processing chromosome C8377\r\n", "Processing chromosome C8377\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:51,145] [Preprocessor.java:241] [main] Processing chromosome C8379\r\n", "Processing chromosome C8379\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:51,176] [Preprocessor.java:241] [main] Processing chromosome C8383\r\n", "Processing chromosome C8383\r\n", "INFO [2014-03-08 06:13:51,197] [Preprocessor.java:241] [main] Processing chromosome C8393\r\n", "Processing chromosome C8393\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:51,228] [Preprocessor.java:241] [main] Processing chromosome C8433\r\n", "Processing chromosome C8433\r\n", "INFO [2014-03-08 06:13:51,260] [Preprocessor.java:241] [main] Processing chromosome C8461\r\n", "Processing chromosome C8461\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:51,292] [Preprocessor.java:241] [main] Processing chromosome C8465\r\n", "Processing chromosome C8465\r\n", "INFO [2014-03-08 06:13:51,324] [Preprocessor.java:241] [main] Processing chromosome C8485\r\n", "Processing chromosome C8485\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:51,381] [Preprocessor.java:241] [main] Processing chromosome C8503\r\n", "Processing chromosome C8503\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:51,403] [Preprocessor.java:241] [main] Processing chromosome C8513\r\n", "Processing chromosome C8513\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:51,447] [Preprocessor.java:241] [main] Processing chromosome C8517\r\n", "Processing chromosome C8517\r\n", "INFO [2014-03-08 06:13:51,466] [Preprocessor.java:241] [main] Processing chromosome C8519\r\n", "Processing chromosome C8519\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:51,518] [Preprocessor.java:241] [main] Processing chromosome C8563\r\n", "Processing chromosome C8563\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:51,538] [Preprocessor.java:241] [main] Processing chromosome C8569\r\n", "Processing chromosome C8569\r\n", "INFO [2014-03-08 06:13:51,569] [Preprocessor.java:241] [main] Processing chromosome C8575\r\n", "Processing chromosome C8575\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:51,652] [Preprocessor.java:241] [main] Processing chromosome C8585\r\n", "Processing chromosome C8585\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:51,693] [Preprocessor.java:241] [main] Processing chromosome C859\r\n", "Processing chromosome C859\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:51,751] [Preprocessor.java:241] [main] Processing chromosome C8591\r\n", "Processing chromosome C8591\r\n", "INFO [2014-03-08 06:13:51,773] [Preprocessor.java:241] [main] Processing chromosome C8599\r\n", "Processing chromosome C8599\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:51,826] [Preprocessor.java:241] [main] Processing chromosome C8601\r\n", "Processing chromosome C8601\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:51,849] [Preprocessor.java:241] [main] Processing chromosome C8605\r\n", "Processing chromosome C8605\r\n", "INFO [2014-03-08 06:13:51,881] [Preprocessor.java:241] [main] Processing chromosome C8665\r\n", "Processing chromosome C8665\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:51,941] [Preprocessor.java:241] [main] Processing chromosome C8671\r\n", "Processing chromosome C8671\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:51,988] [Preprocessor.java:241] [main] Processing chromosome C8695\r\n", "Processing chromosome C8695\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:52,009] [Preprocessor.java:241] [main] Processing chromosome C8739\r\n", "Processing chromosome C8739\r\n", "INFO [2014-03-08 06:13:52,045] [Preprocessor.java:241] [main] Processing chromosome C8751\r\n", "Processing chromosome C8751\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:52,095] [Preprocessor.java:241] [main] Processing chromosome C8757\r\n", "Processing chromosome C8757\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:52,154] [Preprocessor.java:241] [main] Processing chromosome C8767\r\n", "Processing chromosome C8767\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:52,197] [Preprocessor.java:241] [main] Processing chromosome C8771\r\n", "Processing chromosome C8771\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:52,217] [Preprocessor.java:241] [main] Processing chromosome C8793\r\n", "Processing chromosome C8793\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:52,273] [Preprocessor.java:241] [main] Processing chromosome C881\r\n", "Processing chromosome C881\r\n", "INFO [2014-03-08 06:13:52,305] [Preprocessor.java:241] [main] Processing chromosome C8843\r\n", "Processing chromosome C8843\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:52,368] [Preprocessor.java:241] [main] Processing chromosome C8845\r\n", "Processing chromosome C8845\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:52,414] [Preprocessor.java:241] [main] Processing chromosome C8855\r\n", "Processing chromosome C8855\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:52,449] [Preprocessor.java:241] [main] Processing chromosome C8887\r\n", "Processing chromosome C8887\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:52,498] [Preprocessor.java:241] [main] Processing chromosome C8891\r\n", "Processing chromosome C8891\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:52,543] [Preprocessor.java:241] [main] Processing chromosome C89\r\n", "Processing chromosome C89\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:52,598] [Preprocessor.java:241] [main] Processing chromosome C8905\r\n", "Processing chromosome C8905\r\n", "INFO [2014-03-08 06:13:52,617] [Preprocessor.java:241] [main] Processing chromosome C8907\r\n", "Processing chromosome C8907\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:52,685] [Preprocessor.java:241] [main] Processing chromosome C897\r\n", "Processing chromosome C897\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:52,743] [Preprocessor.java:241] [main] Processing chromosome C8987\r\n", "Processing chromosome C8987\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:52,794] [Preprocessor.java:241] [main] Processing chromosome C9001\r\n", "Processing chromosome C9001\r\n", "INFO [2014-03-08 06:13:52,813] [Preprocessor.java:241] [main] Processing chromosome C901\r\n", "Processing chromosome C901\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:52,881] [Preprocessor.java:241] [main] Processing chromosome C9013\r\n", "Processing chromosome C9013\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:52,924] [Preprocessor.java:241] [main] Processing chromosome C9015\r\n", "Processing chromosome C9015\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:52,970] [Preprocessor.java:241] [main] Processing chromosome C9019\r\n", "Processing chromosome C9019\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:53,011] [Preprocessor.java:241] [main] Processing chromosome C9023\r\n", "Processing chromosome C9023\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:53,056] [Preprocessor.java:241] [main] Processing chromosome C9065\r\n", "Processing chromosome C9065\r\n", "INFO [2014-03-08 06:13:53,076] [Preprocessor.java:241] [main] Processing chromosome C9069\r\n", "Processing chromosome C9069\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:53,120] [Preprocessor.java:241] [main] Processing chromosome C9097\r\n", "Processing chromosome C9097\r\n", "INFO [2014-03-08 06:13:53,139] [Preprocessor.java:241] [main] Processing chromosome C91\r\n", "Processing chromosome C91\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:53,216] [Preprocessor.java:241] [main] Processing chromosome C9117\r\n", "Processing chromosome C9117\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:53,256] [Preprocessor.java:241] [main] Processing chromosome C913\r\n", "Processing chromosome C913\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:53,321] [Preprocessor.java:241] [main] Processing chromosome C915\r\n", "Processing chromosome C915\r\n", "INFO [2014-03-08 06:13:53,352] [Preprocessor.java:241] [main] Processing chromosome C9161\r\n", "Processing chromosome C9161\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:53,392] [Preprocessor.java:241] [main] Processing chromosome C9191\r\n", "Processing chromosome C9191\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:53,443] [Preprocessor.java:241] [main] Processing chromosome C9255\r\n", "Processing chromosome C9255\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:53,490] [Preprocessor.java:241] [main] Processing chromosome C9265\r\n", "Processing chromosome C9265\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:53,526] [Preprocessor.java:241] [main] Processing chromosome C9271\r\n", "Processing chromosome C9271\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:53,573] [Preprocessor.java:241] [main] Processing chromosome C9273\r\n", "Processing chromosome C9273\r\n", "INFO [2014-03-08 06:13:53,609] [Preprocessor.java:241] [main] Processing chromosome C9287\r\n", "Processing chromosome C9287\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:53,656] [Preprocessor.java:241] [main] Processing chromosome C9293\r\n", "Processing chromosome C9293\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:53,710] [Preprocessor.java:241] [main] Processing chromosome C9297\r\n", "Processing chromosome C9297\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:53,759] [Preprocessor.java:241] [main] Processing chromosome C9301\r\n", "Processing chromosome C9301\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:53,791] [Preprocessor.java:241] [main] Processing chromosome C9303\r\n", "Processing chromosome C9303\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:53,830] [Preprocessor.java:241] [main] Processing chromosome C9305\r\n", "Processing chromosome C9305\r\n", "INFO [2014-03-08 06:13:53,877] [Preprocessor.java:241] [main] Processing chromosome C9311\r\n", "Processing chromosome C9311\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:53,897] [Preprocessor.java:241] [main] Processing chromosome C9317\r\n", "Processing chromosome C9317\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:53,951] [Preprocessor.java:241] [main] Processing chromosome C9319\r\n", "Processing chromosome C9319\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:53,986] [Preprocessor.java:241] [main] Processing chromosome C937\r\n", "Processing chromosome C937\r\n", "INFO [2014-03-08 06:13:54,017] [Preprocessor.java:241] [main] Processing chromosome C9375\r\n", "Processing chromosome C9375\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:54,057] [Preprocessor.java:241] [main] Processing chromosome C9381\r\n", "Processing chromosome C9381\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:54,103] [Preprocessor.java:241] [main] Processing chromosome C9383\r\n", "Processing chromosome C9383\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:54,141] [Preprocessor.java:241] [main] Processing chromosome C9389\r\n", "Processing chromosome C9389\r\n", "INFO [2014-03-08 06:13:54,187] [Preprocessor.java:241] [main] Processing chromosome C9391\r\n", "Processing chromosome C9391\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:54,206] [Preprocessor.java:241] [main] Processing chromosome C9401\r\n", "Processing chromosome C9401\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:54,253] [Preprocessor.java:241] [main] Processing chromosome C9405\r\n", "Processing chromosome C9405\r\n", "INFO [2014-03-08 06:13:54,272] [Preprocessor.java:241] [main] Processing chromosome C9407\r\n", "Processing chromosome C9407\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:54,303] [Preprocessor.java:241] [main] Processing chromosome C9417\r\n", "Processing chromosome C9417\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:54,355] [Preprocessor.java:241] [main] Processing chromosome C9437\r\n", "Processing chromosome C9437\r\n", "INFO [2014-03-08 06:13:54,392] [Preprocessor.java:241] [main] Processing chromosome C947\r\n", "Processing chromosome C947\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:54,422] [Preprocessor.java:241] [main] Processing chromosome C9481\r\n", "Processing chromosome C9481\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:54,487] [Preprocessor.java:241] [main] Processing chromosome C9483\r\n", "Processing chromosome C9483\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:54,509] [Preprocessor.java:241] [main] Processing chromosome C9485\r\n", "Processing chromosome C9485\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:54,569] [Preprocessor.java:241] [main] Processing chromosome C9497\r\n", "Processing chromosome C9497\r\n", "INFO [2014-03-08 06:13:54,589] [Preprocessor.java:241] [main] Processing chromosome C9509\r\n", "Processing chromosome C9509\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:54,652] [Preprocessor.java:241] [main] Processing chromosome C9515\r\n", "Processing chromosome C9515\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:54,695] [Preprocessor.java:241] [main] Processing chromosome C9521\r\n", "Processing chromosome C9521\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:54,733] [Preprocessor.java:241] [main] Processing chromosome C9531\r\n", "Processing chromosome C9531\r\n", "INFO [2014-03-08 06:13:54,754] [Preprocessor.java:241] [main] Processing chromosome C9565\r\n", "Processing chromosome C9565\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:54,807] [Preprocessor.java:241] [main] Processing chromosome C9569\r\n", "Processing chromosome C9569\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:54,856] [Preprocessor.java:241] [main] Processing chromosome C9585\r\n", "Processing chromosome C9585\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:54,905] [Preprocessor.java:241] [main] Processing chromosome C9589\r\n", "Processing chromosome C9589\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:54,950] [Preprocessor.java:241] [main] Processing chromosome C9609\r\n", "Processing chromosome C9609\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:54,992] [Preprocessor.java:241] [main] Processing chromosome C9651\r\n", "Processing chromosome C9651\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:55,028] [Preprocessor.java:241] [main] Processing chromosome C9661\r\n", "Processing chromosome C9661\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:55,072] [Preprocessor.java:241] [main] Processing chromosome C9663\r\n", "Processing chromosome C9663\r\n", "INFO [2014-03-08 06:13:55,116] [Preprocessor.java:241] [main] Processing chromosome C9667\r\n", "Processing chromosome C9667\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:55,150] [Preprocessor.java:241] [main] Processing chromosome C9671\r\n", "Processing chromosome C9671\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:55,211] [Preprocessor.java:241] [main] Processing chromosome C9691\r\n", "Processing chromosome C9691\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:55,260] [Preprocessor.java:241] [main] Processing chromosome C9751\r\n", "Processing chromosome C9751\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:55,309] [Preprocessor.java:241] [main] Processing chromosome C9761\r\n", "Processing chromosome C9761\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:55,349] [Preprocessor.java:241] [main] Processing chromosome C9793\r\n", "Processing chromosome C9793\r\n", "INFO [2014-03-08 06:13:55,368] [Preprocessor.java:241] [main] Processing chromosome C9795\r\n", "Processing chromosome C9795\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:55,399] [Preprocessor.java:241] [main] Processing chromosome C9809\r\n", "Processing chromosome C9809\r\n", "INFO [2014-03-08 06:13:55,430] [Preprocessor.java:241] [main] Processing chromosome C9815\r\n", "Processing chromosome C9815\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:55,485] [Preprocessor.java:241] [main] Processing chromosome C9823\r\n", "Processing chromosome C9823\r\n", "INFO [2014-03-08 06:13:55,528] [Preprocessor.java:241] [main] Processing chromosome C9835\r\n", "Processing chromosome C9835\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:55,548] [Preprocessor.java:241] [main] Processing chromosome C9879\r\n", "Processing chromosome C9879\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:55,599] [Preprocessor.java:241] [main] Processing chromosome C9917\r\n", "Processing chromosome C9917\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:55,654] [Preprocessor.java:241] [main] Processing chromosome C9947\r\n", "Processing chromosome C9947\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:55,699] [Preprocessor.java:241] [main] Processing chromosome C9949\r\n", "Processing chromosome C9949\r\n", "INFO [2014-03-08 06:13:55,736] [Preprocessor.java:241] [main] Processing chromosome C9951\r\n", "Processing chromosome C9951\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:55,787] [Preprocessor.java:241] [main] Processing chromosome C9963\r\n", "Processing chromosome C9963\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:55,821] [Preprocessor.java:241] [main] Processing chromosome C9971\r\n", "Processing chromosome C9971\r\n", "INFO [2014-03-08 06:13:55,842] [Preprocessor.java:241] [main] Processing chromosome scaffold1\r\n", "Processing chromosome scaffold1\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:55,880] [Preprocessor.java:241] [main] Processing chromosome scaffold10\r\n", "Processing chromosome scaffold10\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:55,936] [Preprocessor.java:241] [main] Processing chromosome scaffold100\r\n", "Processing chromosome scaffold100\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:56,137] [Preprocessor.java:241] [main] Processing chromosome scaffold1000\r\n", "Processing chromosome scaffold1000\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:56,224] [Preprocessor.java:241] [main] Processing chromosome scaffold1001\r\n", "Processing chromosome scaffold1001\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:56,283] [Preprocessor.java:241] [main] Processing chromosome scaffold1002\r\n", "Processing chromosome scaffold1002\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:56,312] [Preprocessor.java:241] [main] Processing chromosome scaffold1004\r\n", "Processing chromosome scaffold1004\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:56,421] [Preprocessor.java:241] [main] Processing chromosome scaffold1005\r\n", "Processing chromosome scaffold1005\r\n", "INFO [2014-03-08 06:13:56,434] [Preprocessor.java:241] [main] Processing chromosome scaffold1006\r\n", "Processing chromosome scaffold1006\r\n", "INFO [2014-03-08 06:13:56,444] [Preprocessor.java:241] [main] Processing chromosome scaffold1008\r\n", "Processing chromosome scaffold1008\r\n", "INFO [2014-03-08 06:13:56,449] [Preprocessor.java:241] [main] Processing chromosome scaffold1009\r\n", "Processing chromosome scaffold1009\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "." ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:56,755] [Preprocessor.java:241] [main] Processing chromosome scaffold101\r\n", "Processing chromosome scaffold101\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:56,862] [Preprocessor.java:241] [main] Processing chromosome scaffold1010\r\n", "Processing chromosome scaffold1010\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:56,901] [Preprocessor.java:241] [main] Processing chromosome scaffold1011\r\n", "Processing chromosome scaffold1011\r\n", "INFO [2014-03-08 06:13:56,912] [Preprocessor.java:241] [main] Processing chromosome scaffold1014\r\n", "Processing chromosome scaffold1014\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:57,019] [Preprocessor.java:241] [main] Processing chromosome scaffold1016\r\n", "Processing chromosome scaffold1016\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:57,065] [Preprocessor.java:241] [main] Processing chromosome scaffold1017\r\n", "Processing chromosome scaffold1017\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:57,392] [Preprocessor.java:241] [main] Processing chromosome scaffold1018\r\n", "Processing chromosome scaffold1018\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:57,505] [Preprocessor.java:241] [main] Processing chromosome scaffold102\r\n", "Processing chromosome scaffold102\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:57,838] [Preprocessor.java:241] [main] Processing chromosome scaffold1020\r\n", "Processing chromosome scaffold1020\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:57,868] [Preprocessor.java:241] [main] Processing chromosome scaffold1021\r\n", "Processing chromosome scaffold1021\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:57,975] [Preprocessor.java:241] [main] Processing chromosome scaffold1022\r\n", "Processing chromosome scaffold1022\r\n", "INFO [2014-03-08 06:13:57,984] [Preprocessor.java:241] [main] Processing chromosome scaffold1024\r\n", "Processing chromosome scaffold1024\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:58,257] [Preprocessor.java:241] [main] Processing chromosome scaffold1026\r\n", "Processing chromosome scaffold1026\r\n", "INFO [2014-03-08 06:13:58,277] [Preprocessor.java:241] [main] Processing chromosome scaffold1027\r\n", "Processing chromosome scaffold1027\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:58,331] [Preprocessor.java:241] [main] Processing chromosome scaffold1028\r\n", "Processing chromosome scaffold1028\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:58,394] 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chromosome scaffold1033\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:58,835] [Preprocessor.java:241] [main] Processing chromosome scaffold1034\r\n", "Processing chromosome scaffold1034\r\n", "INFO [2014-03-08 06:13:58,856] [Preprocessor.java:241] [main] Processing chromosome scaffold1035\r\n", "Processing chromosome scaffold1035\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:58,897] [Preprocessor.java:241] [main] Processing chromosome scaffold1036\r\n", "Processing chromosome scaffold1036\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:58,983] [Preprocessor.java:241] [main] Processing chromosome scaffold1037\r\n", "Processing chromosome scaffold1037\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:13:59,127] [Preprocessor.java:241] [main] Processing chromosome scaffold1038\r\n", "Processing chromosome 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chromosome scaffold1528\r\n", "Processing chromosome scaffold1528\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:23,554] [Preprocessor.java:241] [main] Processing chromosome scaffold1529\r\n", "Processing chromosome scaffold1529\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:23,599] [Preprocessor.java:241] [main] Processing chromosome scaffold1530\r\n", "Processing chromosome scaffold1530\r\n", "INFO [2014-03-08 06:14:23,619] [Preprocessor.java:241] [main] Processing chromosome scaffold1531\r\n", "Processing chromosome scaffold1531\r\n", "INFO [2014-03-08 06:14:23,635] [Preprocessor.java:241] [main] Processing chromosome scaffold1532\r\n", "Processing chromosome scaffold1532\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:23,815] [Preprocessor.java:241] [main] Processing chromosome scaffold1533\r\n", "Processing chromosome scaffold1533\r\n" ] }, { 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[ "." ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:24,898] [Preprocessor.java:241] [main] Processing chromosome scaffold1560\r\n", "Processing chromosome scaffold1560\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:24,950] [Preprocessor.java:241] [main] Processing chromosome scaffold1561\r\n", "Processing chromosome scaffold1561\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:24,994] [Preprocessor.java:241] [main] Processing chromosome scaffold1562\r\n", "Processing chromosome scaffold1562\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:25,050] [Preprocessor.java:241] [main] Processing chromosome scaffold1563\r\n", "Processing chromosome scaffold1563\r\n", "INFO [2014-03-08 06:14:25,070] [Preprocessor.java:241] [main] Processing chromosome scaffold1564\r\n", "Processing chromosome scaffold1564\r\n" ] }, { 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] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:27,428] [Preprocessor.java:241] [main] Processing chromosome scaffold1603\r\n", "Processing chromosome scaffold1603\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:27,525] [Preprocessor.java:241] [main] Processing chromosome scaffold1604\r\n", "Processing chromosome scaffold1604\r\n", "INFO [2014-03-08 06:14:27,528] [Preprocessor.java:241] [main] Processing chromosome scaffold1605\r\n", "Processing chromosome scaffold1605\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:27,805] [Preprocessor.java:241] [main] Processing chromosome scaffold1606\r\n", "Processing chromosome scaffold1606\r\n", "INFO [2014-03-08 06:14:27,829] [Preprocessor.java:241] [main] Processing chromosome scaffold1607\r\n", "Processing chromosome scaffold1607\r\n", "INFO [2014-03-08 06:14:27,853] [Preprocessor.java:241] [main] Processing chromosome 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[Preprocessor.java:241] [main] Processing chromosome scaffold30798\r\n", "Processing chromosome scaffold30798\r\n", "INFO [2014-03-08 06:14:56,245] [Preprocessor.java:241] [main] Processing chromosome scaffold308\r\n", "Processing chromosome scaffold308\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:56,296] [Preprocessor.java:241] [main] Processing chromosome scaffold30814\r\n", "Processing chromosome scaffold30814\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:56,304] [Preprocessor.java:241] [main] Processing chromosome scaffold30818\r\n", "Processing chromosome scaffold30818\r\n", "INFO [2014-03-08 06:14:56,325] [Preprocessor.java:241] [main] Processing chromosome scaffold30826\r\n", "Processing chromosome scaffold30826\r\n", "INFO [2014-03-08 06:14:56,332] [Preprocessor.java:241] [main] Processing chromosome scaffold30854\r\n", "Processing chromosome scaffold30854\r\n", "INFO [2014-03-08 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"output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:56,471] [Preprocessor.java:241] [main] Processing chromosome scaffold310\r\n", "Processing chromosome scaffold310\r\n", "INFO [2014-03-08 06:14:56,478] [Preprocessor.java:241] [main] Processing chromosome scaffold31002\r\n", "Processing chromosome scaffold31002\r\n", "INFO [2014-03-08 06:14:56,498] [Preprocessor.java:241] [main] Processing chromosome scaffold31008\r\n", "Processing chromosome scaffold31008\r\n", "INFO [2014-03-08 06:14:56,503] [Preprocessor.java:241] [main] Processing chromosome scaffold31018\r\n", "Processing chromosome scaffold31018\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:56,520] [Preprocessor.java:241] [main] Processing chromosome scaffold31032\r\n", "Processing chromosome scaffold31032\r\n", "INFO [2014-03-08 06:14:56,527] [Preprocessor.java:241] [main] Processing chromosome scaffold31038\r\n", "Processing chromosome scaffold31038\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:56,560] [Preprocessor.java:241] [main] Processing chromosome scaffold31080\r\n", "Processing chromosome scaffold31080\r\n", "INFO [2014-03-08 06:14:56,609] [Preprocessor.java:241] [main] Processing chromosome scaffold31090\r\n", "Processing chromosome scaffold31090\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:56,626] [Preprocessor.java:241] [main] Processing chromosome scaffold31098\r\n", "Processing chromosome scaffold31098\r\n", "INFO [2014-03-08 06:14:56,651] [Preprocessor.java:241] [main] Processing chromosome scaffold311\r\n", "Processing chromosome scaffold311\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:56,684] [Preprocessor.java:241] [main] Processing chromosome scaffold312\r\n", "Processing chromosome scaffold312\r\n", "INFO [2014-03-08 06:14:56,703] [Preprocessor.java:241] [main] Processing chromosome 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chromosome scaffold31514\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:57,606] [Preprocessor.java:241] [main] Processing chromosome scaffold31524\r\n", "Processing chromosome scaffold31524\r\n", "INFO [2014-03-08 06:14:57,617] [Preprocessor.java:241] [main] Processing chromosome scaffold31534\r\n", "Processing chromosome scaffold31534\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:57,642] [Preprocessor.java:241] [main] Processing chromosome scaffold31538\r\n", "Processing chromosome scaffold31538\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:57,690] [Preprocessor.java:241] [main] Processing chromosome scaffold31556\r\n", "Processing chromosome scaffold31556\r\n", "INFO [2014-03-08 06:14:57,721] [Preprocessor.java:241] [main] Processing chromosome scaffold316\r\n", "Processing chromosome scaffold316\r\n", "INFO [2014-03-08 06:14:57,724] 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[Preprocessor.java:241] [main] Processing chromosome scaffold325\r\n", "Processing chromosome scaffold325\r\n", "INFO [2014-03-08 06:14:58,807] [Preprocessor.java:241] [main] Processing chromosome scaffold32520\r\n", "Processing chromosome scaffold32520\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:58,828] [Preprocessor.java:241] [main] Processing chromosome scaffold32526\r\n", "Processing chromosome scaffold32526\r\n", "INFO [2014-03-08 06:14:58,852] [Preprocessor.java:241] [main] Processing chromosome scaffold32530\r\n", "Processing chromosome scaffold32530\r\n", "INFO [2014-03-08 06:14:58,862] [Preprocessor.java:241] [main] Processing chromosome scaffold32546\r\n", "Processing chromosome scaffold32546\r\n", "INFO [2014-03-08 06:14:58,867] [Preprocessor.java:241] [main] Processing chromosome scaffold32566\r\n", "Processing chromosome scaffold32566\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 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chromosome scaffold32646\r\n", "Processing chromosome scaffold32646\r\n", "INFO [2014-03-08 06:14:58,977] [Preprocessor.java:241] [main] Processing chromosome scaffold32666\r\n", "Processing chromosome scaffold32666\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:59,003] [Preprocessor.java:241] [main] Processing chromosome scaffold32686\r\n", "Processing chromosome scaffold32686\r\n", "INFO [2014-03-08 06:14:59,028] [Preprocessor.java:241] [main] Processing chromosome scaffold32688\r\n", "Processing chromosome scaffold32688\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:59,063] [Preprocessor.java:241] [main] Processing chromosome scaffold327\r\n", "Processing chromosome scaffold327\r\n", "INFO [2014-03-08 06:14:59,071] [Preprocessor.java:241] [main] Processing chromosome scaffold32708\r\n", "Processing chromosome scaffold32708\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO 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[main] Processing chromosome scaffold32786\r\n", "Processing chromosome scaffold32786\r\n", "INFO [2014-03-08 06:14:59,180] [Preprocessor.java:241] [main] Processing chromosome scaffold328\r\n", "Processing chromosome scaffold328\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:59,192] [Preprocessor.java:241] [main] Processing chromosome scaffold32822\r\n", "Processing chromosome scaffold32822\r\n", "INFO [2014-03-08 06:14:59,197] [Preprocessor.java:241] [main] Processing chromosome scaffold32844\r\n", "Processing chromosome scaffold32844\r\n", "INFO [2014-03-08 06:14:59,208] [Preprocessor.java:241] [main] Processing chromosome scaffold32850\r\n", "Processing chromosome scaffold32850\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:59,240] [Preprocessor.java:241] [main] Processing chromosome scaffold32864\r\n", "Processing chromosome scaffold32864\r\n", "INFO [2014-03-08 06:14:59,271] [Preprocessor.java:241] [main] Processing chromosome scaffold32894\r\n", "Processing chromosome scaffold32894\r\n", "INFO [2014-03-08 06:14:59,275] [Preprocessor.java:241] [main] Processing chromosome scaffold329\r\n", "Processing chromosome scaffold329\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:59,299] [Preprocessor.java:241] [main] Processing chromosome scaffold32900\r\n", "Processing chromosome scaffold32900\r\n", "INFO [2014-03-08 06:14:59,311] [Preprocessor.java:241] [main] Processing chromosome scaffold32912\r\n", "Processing chromosome scaffold32912\r\n", "INFO [2014-03-08 06:14:59,327] [Preprocessor.java:241] [main] Processing chromosome scaffold32922\r\n", "Processing chromosome scaffold32922\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:59,345] [Preprocessor.java:241] [main] Processing chromosome scaffold32956\r\n", "Processing chromosome scaffold32956\r\n", "INFO [2014-03-08 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[main] Processing chromosome scaffold33056\r\n", "Processing chromosome scaffold33056\r\n", "INFO [2014-03-08 06:14:59,535] [Preprocessor.java:241] [main] Processing chromosome scaffold33064\r\n", "Processing chromosome scaffold33064\r\n", "INFO [2014-03-08 06:14:59,543] [Preprocessor.java:241] [main] Processing chromosome scaffold33066\r\n", "Processing chromosome scaffold33066\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:59,568] [Preprocessor.java:241] [main] Processing chromosome scaffold33072\r\n", "Processing chromosome scaffold33072\r\n", "INFO [2014-03-08 06:14:59,572] [Preprocessor.java:241] [main] Processing chromosome scaffold33074\r\n", "Processing chromosome scaffold33074\r\n", "INFO [2014-03-08 06:14:59,582] [Preprocessor.java:241] [main] Processing chromosome scaffold33082\r\n", "Processing chromosome scaffold33082\r\n", "INFO [2014-03-08 06:14:59,584] [Preprocessor.java:241] [main] Processing chromosome scaffold33090\r\n", "Processing chromosome scaffold33090\r\n", "INFO [2014-03-08 06:14:59,592] [Preprocessor.java:241] [main] Processing chromosome scaffold33094\r\n", "Processing chromosome scaffold33094\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:59,600] [Preprocessor.java:241] [main] Processing chromosome scaffold331\r\n", "Processing chromosome scaffold331\r\n", "INFO [2014-03-08 06:14:59,623] [Preprocessor.java:241] [main] Processing chromosome scaffold33108\r\n", "Processing chromosome scaffold33108\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:14:59,653] [Preprocessor.java:241] [main] Processing chromosome scaffold33118\r\n", "Processing chromosome scaffold33118\r\n", "INFO [2014-03-08 06:14:59,666] [Preprocessor.java:241] [main] Processing chromosome scaffold33122\r\n", "Processing chromosome scaffold33122\r\n", "INFO [2014-03-08 06:14:59,682] [Preprocessor.java:241] [main] Processing chromosome 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Processing chromosome scaffold33594\r\n", "Processing chromosome scaffold33594\r\n", "INFO [2014-03-08 06:15:00,874] [Preprocessor.java:241] [main] Processing chromosome scaffold336\r\n", "Processing chromosome scaffold336\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:15:00,960] [Preprocessor.java:241] [main] Processing chromosome scaffold33610\r\n", "Processing chromosome scaffold33610\r\n", "INFO [2014-03-08 06:15:00,965] [Preprocessor.java:241] [main] Processing chromosome scaffold33618\r\n", "Processing chromosome scaffold33618\r\n", "INFO [2014-03-08 06:15:00,983] [Preprocessor.java:241] [main] Processing chromosome scaffold33628\r\n", "Processing chromosome scaffold33628\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:15:00,989] [Preprocessor.java:241] [main] Processing chromosome scaffold33638\r\n", "Processing chromosome scaffold33638\r\n", "INFO [2014-03-08 06:15:01,015] [Preprocessor.java:241] 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"." ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:15:01,836] [Preprocessor.java:241] [main] Processing chromosome scaffold340\r\n", "Processing chromosome scaffold340\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:15:01,927] [Preprocessor.java:241] [main] Processing chromosome scaffold34000\r\n", "Processing chromosome scaffold34000\r\n", "INFO [2014-03-08 06:15:01,936] [Preprocessor.java:241] [main] Processing chromosome scaffold34008\r\n", "Processing chromosome scaffold34008\r\n", "INFO [2014-03-08 06:15:01,944] [Preprocessor.java:241] [main] Processing chromosome scaffold34016\r\n", "Processing chromosome scaffold34016\r\n", "INFO [2014-03-08 06:15:01,952] [Preprocessor.java:241] [main] Processing chromosome scaffold34018\r\n", "Processing chromosome scaffold34018\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:15:01,985] [Preprocessor.java:241] [main] Processing 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}, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:15:05,085] [Preprocessor.java:241] [main] Processing chromosome scaffold35332\r\n", "Processing chromosome scaffold35332\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:15:05,133] [Preprocessor.java:241] [main] Processing chromosome scaffold35334\r\n", "Processing chromosome scaffold35334\r\n", "INFO [2014-03-08 06:15:05,160] [Preprocessor.java:241] [main] Processing chromosome scaffold35336\r\n", "Processing chromosome scaffold35336\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:15:05,185] [Preprocessor.java:241] [main] Processing chromosome scaffold35344\r\n", "Processing chromosome scaffold35344\r\n", "INFO [2014-03-08 06:15:05,192] [Preprocessor.java:241] [main] Processing chromosome scaffold35346\r\n", "Processing chromosome scaffold35346\r\n", "INFO [2014-03-08 06:15:05,200] [Preprocessor.java:241] [main] Processing 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Processing chromosome scaffold36016\r\n", "Processing chromosome scaffold36016\r\n", "INFO [2014-03-08 06:15:07,165] [Preprocessor.java:241] [main] Processing chromosome scaffold36020\r\n", "Processing chromosome scaffold36020\r\n", "INFO [2014-03-08 06:15:07,171] [Preprocessor.java:241] [main] Processing chromosome scaffold36022\r\n", "Processing chromosome scaffold36022\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:15:07,198] [Preprocessor.java:241] [main] Processing chromosome scaffold36026\r\n", "Processing chromosome scaffold36026\r\n", "INFO [2014-03-08 06:15:07,205] [Preprocessor.java:241] [main] Processing chromosome scaffold36034\r\n", "Processing chromosome scaffold36034\r\n", "INFO [2014-03-08 06:15:07,232] [Preprocessor.java:241] [main] Processing chromosome scaffold36036\r\n", "Processing chromosome scaffold36036\r\n", "INFO [2014-03-08 06:15:07,243] [Preprocessor.java:241] [main] Processing chromosome scaffold36070\r\n", "Processing chromosome scaffold36070\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:15:07,254] [Preprocessor.java:241] [main] Processing chromosome scaffold36088\r\n", "Processing chromosome scaffold36088\r\n", "INFO [2014-03-08 06:15:07,264] [Preprocessor.java:241] [main] Processing chromosome scaffold36092\r\n", "Processing chromosome scaffold36092\r\n", "INFO [2014-03-08 06:15:07,285] [Preprocessor.java:241] [main] Processing chromosome scaffold36094\r\n", "Processing chromosome scaffold36094\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:15:07,328] [Preprocessor.java:241] [main] Processing chromosome scaffold361\r\n", "Processing chromosome scaffold361\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:15:07,466] [Preprocessor.java:241] [main] Processing chromosome scaffold36102\r\n", "Processing chromosome scaffold36102\r\n", "INFO [2014-03-08 06:15:07,476] [Preprocessor.java:241] [main] Processing chromosome scaffold36104\r\n", "Processing chromosome scaffold36104\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:15:07,513] [Preprocessor.java:241] [main] Processing chromosome scaffold36108\r\n", "Processing chromosome scaffold36108\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:15:07,562] [Preprocessor.java:241] [main] Processing chromosome scaffold36114\r\n", "Processing chromosome scaffold36114\r\n", "INFO [2014-03-08 06:15:07,575] [Preprocessor.java:241] [main] Processing chromosome scaffold36118\r\n", "Processing chromosome scaffold36118\r\n", "INFO [2014-03-08 06:15:07,589] [Preprocessor.java:241] [main] Processing chromosome scaffold36122\r\n", "Processing chromosome scaffold36122\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:15:07,628] [Preprocessor.java:241] [main] Processing chromosome scaffold36140\r\n", "Processing chromosome scaffold36140\r\n", "INFO [2014-03-08 06:15:07,645] [Preprocessor.java:241] [main] Processing chromosome scaffold36156\r\n", "Processing chromosome scaffold36156\r\n", "INFO [2014-03-08 06:15:07,654] [Preprocessor.java:241] [main] Processing chromosome scaffold36158\r\n", "Processing chromosome scaffold36158\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:15:07,715] [Preprocessor.java:241] [main] Processing chromosome scaffold36170\r\n", "Processing chromosome scaffold36170\r\n", "INFO [2014-03-08 06:15:07,730] [Preprocessor.java:241] [main] Processing chromosome scaffold36174\r\n", "Processing chromosome scaffold36174\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:15:07,760] [Preprocessor.java:241] [main] Processing chromosome scaffold36190\r\n", "Processing chromosome scaffold36190\r\n", "INFO [2014-03-08 06:15:07,784] [Preprocessor.java:241] [main] Processing chromosome 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"INFO [2014-03-08 06:15:16,537] [Preprocessor.java:241] [main] Processing chromosome scaffold38686\r\n", "Processing chromosome scaffold38686\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:15:16,590] [Preprocessor.java:241] [main] Processing chromosome scaffold38688\r\n", "Processing chromosome scaffold38688\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "20.0% \r\n", "INFO [2014-03-08 06:15:16,654] [Preprocessor.java:241] [main] Processing chromosome scaffold387\r\n", "Processing chromosome scaffold387\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:15:16,688] [Preprocessor.java:241] [main] Processing chromosome scaffold38700\r\n", "Processing chromosome scaffold38700\r\n", "INFO [2014-03-08 06:15:16,706] [Preprocessor.java:241] [main] Processing chromosome scaffold38704\r\n", "Processing chromosome scaffold38704\r\n", "INFO [2014-03-08 06:15:16,724] [Preprocessor.java:241] [main] 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scaffold955\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:16:18,041] [Preprocessor.java:241] [main] Processing chromosome scaffold958\r\n", "Processing chromosome scaffold958\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:16:18,068] [Preprocessor.java:241] [main] Processing chromosome scaffold959\r\n", "Processing chromosome scaffold959\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:16:18,112] [Preprocessor.java:241] [main] Processing chromosome scaffold96\r\n", "Processing chromosome scaffold96\r\n", "INFO [2014-03-08 06:16:18,137] [Preprocessor.java:241] [main] Processing chromosome scaffold960\r\n", "Processing chromosome scaffold960\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:16:18,168] [Preprocessor.java:241] [main] Processing chromosome scaffold961\r\n", "Processing chromosome scaffold961\r\n", "INFO [2014-03-08 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scaffold990\r\n", "INFO [2014-03-08 06:16:19,597] [Preprocessor.java:241] [main] Processing chromosome scaffold991\r\n", "Processing chromosome scaffold991\r\n", "INFO [2014-03-08 06:16:19,606] [Preprocessor.java:241] [main] Processing chromosome scaffold992\r\n", "Processing chromosome scaffold992\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:16:19,666] [Preprocessor.java:241] [main] Processing chromosome scaffold993\r\n", "Processing chromosome scaffold993\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:16:19,741] [Preprocessor.java:241] [main] Processing chromosome scaffold994\r\n", "Processing chromosome scaffold994\r\n", "INFO [2014-03-08 06:16:19,750] [Preprocessor.java:241] [main] Processing chromosome scaffold995\r\n", "Processing chromosome scaffold995\r\n", "INFO [2014-03-08 06:16:19,753] [Preprocessor.java:241] [main] Processing chromosome scaffold997\r\n", "Processing chromosome scaffold997\r\n", "INFO [2014-03-08 06:16:19,760] [Preprocessor.java:241] [main] Processing chromosome scaffold998\r\n", "Processing chromosome scaffold998\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:16:19,797] [Preprocessor.java:241] [main] Processing chromosome scaffold999\r\n", "Processing chromosome scaffold999\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:16:20,637] [TDFWriter.java:304] [main] Group idx: 1\r\n", "Group idx: 1\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "100.0% \r\n", "Done\r\n" ] } ], "prompt_number": 6 }, { "cell_type": "heading", "level": 3, "metadata": {}, "source": [ "Mgo1.3" ] }, { "cell_type": "code", "collapsed": false, "input": [ "#changed quality score metric to 1.3-1.8 from 1.9 to see if data changes." ], "language": "python", "metadata": {}, "outputs": [], "prompt_number": 8 }, { "cell_type": "code", "collapsed": false, "input": [ "folder=\"RNAseq2bedgraph_Mgo1.3-2014-03-07-14-06-07.430\"\n", "id=\"Mgo13\"" ], "language": "python", "metadata": {}, "outputs": [], "prompt_number": 10 }, { "cell_type": "code", "collapsed": false, "input": [ "!icd /iplant/home/sr320/Cgigas_v9/Zhang/bgraph/{folder}\n", "!imv accepted_hits.bam z{id}_tophat.bam\n", "!imv bedtools_genomecov_output z{id}_th_genomecov.bedgraph\n", "!cd /Volumes/web/cnidarian/\n", "!iget z{id}_th_genomecov.bedgraph\n", "!iget z{id}_tophat.bam\n", "!igvtools toTDF z{id}_th_genomecov.bedgraph z{id}_th_genomecov.bedgraph.tdf /Volumes/web/cnidarian/cgigas_v9_genome03.chrom.sizes\n", "!iput z{id}_th_genomecov.bedgraph.tdf" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:00,600] [IgvTools.java:613] [main] toTDF. File = zMgo13_th_genomecov.bedgraph\r\n", "toTDF. File = zMgo13_th_genomecov.bedgraph\r\n", "INFO [2014-03-08 06:23:00,605] [IgvTools.java:614] [main] Max zoom = 7\r\n", "Max zoom = 7\r\n", "INFO [2014-03-08 06:23:00,606] [IgvTools.java:622] [main] Window functions: mean \r\n", "Window functions: mean \r\n", "INFO [2014-03-08 06:23:00,617] [GenomeManager.java:130] [main] Loading genome: /Volumes/web/cnidarian/cgigas_v9_genome03.chrom.sizes\r\n", "Loading genome: /Volumes/web/cnidarian/cgigas_v9_genome03.chrom.sizes\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:01,054] [DirectoryManager.java:149] [main] IGV Directory: /Users/sr320/igv\r\n", "IGV Directory: /Users/sr320/igv\r\n", "INFO [2014-03-08 06:23:01,075] [GenomeManager.java:174] [main] Genome loaded. id= /Volumes/web/cnidarian/cgigas_v9_genome03\r\n", "Genome loaded. id= /Volumes/web/cnidarian/cgigas_v9_genome03\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:01,190] [Preprocessor.java:241] [main] Processing chromosome C1\r\n", "Processing chromosome C1\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:01,485] [Preprocessor.java:241] [main] Processing chromosome C10015\r\n", "Processing chromosome C10015\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:02,010] [Preprocessor.java:241] [main] Processing chromosome C10033\r\n", "Processing chromosome C10033\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:02,331] [Preprocessor.java:241] [main] Processing chromosome C10043\r\n", "Processing chromosome C10043\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:02,380] [Preprocessor.java:241] [main] Processing chromosome C10047\r\n", "Processing chromosome C10047\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:02,557] [Preprocessor.java:241] [main] Processing chromosome C10049\r\n", "Processing chromosome C10049\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:02,601] [Preprocessor.java:241] [main] Processing chromosome C10057\r\n", "Processing chromosome C10057\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:02,664] [Preprocessor.java:241] [main] Processing chromosome C1007\r\n", "Processing chromosome C1007\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:02,886] [Preprocessor.java:241] [main] Processing chromosome C10089\r\n", "Processing chromosome C10089\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:02,941] [Preprocessor.java:241] [main] Processing chromosome C10091\r\n", "Processing chromosome C10091\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:03,158] [Preprocessor.java:241] [main] Processing chromosome C10097\r\n", "Processing chromosome C10097\r\n", "INFO [2014-03-08 06:23:03,207] [Preprocessor.java:241] [main] Processing chromosome C10109\r\n", "Processing chromosome C10109\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:03,312] [Preprocessor.java:241] [main] Processing chromosome C10131\r\n", "Processing chromosome C10131\r\n", "INFO [2014-03-08 06:23:03,344] [Preprocessor.java:241] [main] Processing chromosome C10157\r\n", "Processing chromosome C10157\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:03,545] [Preprocessor.java:241] [main] Processing chromosome C10163\r\n", "Processing chromosome C10163\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:03,638] [Preprocessor.java:241] [main] Processing chromosome C10171\r\n", "Processing chromosome C10171\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:03,758] [Preprocessor.java:241] [main] 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[Preprocessor.java:241] [main] Processing chromosome C10405\r\n", "Processing chromosome C10405\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:04,748] [Preprocessor.java:241] [main] Processing chromosome C10409\r\n", "Processing chromosome C10409\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:04,800] [Preprocessor.java:241] [main] Processing chromosome C10411\r\n", "Processing chromosome C10411\r\n", "INFO [2014-03-08 06:23:04,823] [Preprocessor.java:241] [main] Processing chromosome C10421\r\n", "Processing chromosome C10421\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:04,860] [Preprocessor.java:241] [main] Processing chromosome C10425\r\n", "Processing chromosome C10425\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:04,913] [Preprocessor.java:241] [main] Processing chromosome C10431\r\n", "Processing chromosome C10431\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:04,970] [Preprocessor.java:241] [main] Processing chromosome C10437\r\n", "Processing chromosome C10437\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:05,035] [Preprocessor.java:241] [main] Processing chromosome C10459\r\n", "Processing chromosome C10459\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:05,150] [Preprocessor.java:241] [main] Processing chromosome C10477\r\n", "Processing chromosome C10477\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:05,241] [Preprocessor.java:241] [main] Processing chromosome C10487\r\n", "Processing chromosome C10487\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:05,287] [Preprocessor.java:241] [main] Processing chromosome C10495\r\n", "Processing chromosome C10495\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:05,333] [Preprocessor.java:241] [main] Processing chromosome C10529\r\n", "Processing chromosome C10529\r\n", "INFO [2014-03-08 06:23:05,354] [Preprocessor.java:241] [main] Processing chromosome C10535\r\n", "Processing chromosome C10535\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:05,433] [Preprocessor.java:241] [main] Processing chromosome C10549\r\n", "Processing chromosome C10549\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:05,455] [Preprocessor.java:241] [main] Processing chromosome C1057\r\n", "Processing chromosome C1057\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:05,556] [Preprocessor.java:241] [main] Processing chromosome C10575\r\n", "Processing chromosome C10575\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 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"Processing chromosome C10609\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:05,893] [Preprocessor.java:241] [main] Processing chromosome C10613\r\n", "Processing chromosome C10613\r\n", "INFO [2014-03-08 06:23:05,913] [Preprocessor.java:241] [main] Processing chromosome C10619\r\n", "Processing chromosome C10619\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:06,030] [Preprocessor.java:241] [main] Processing chromosome C10621\r\n", "Processing chromosome C10621\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:06,109] [Preprocessor.java:241] [main] Processing chromosome C10637\r\n", "Processing chromosome C10637\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:06,133] [Preprocessor.java:241] [main] Processing chromosome C10655\r\n", "Processing chromosome C10655\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:06,227] [Preprocessor.java:241] [main] Processing chromosome C10677\r\n", "Processing chromosome C10677\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:06,285] [Preprocessor.java:241] [main] Processing chromosome C10679\r\n", "Processing chromosome C10679\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:06,315] [Preprocessor.java:241] [main] Processing chromosome C10687\r\n", "Processing chromosome C10687\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:06,359] [Preprocessor.java:241] [main] Processing chromosome C10693\r\n", "Processing chromosome C10693\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:06,434] [Preprocessor.java:241] [main] Processing chromosome C10695\r\n", "Processing chromosome C10695\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:06,560] [Preprocessor.java:241] [main] Processing chromosome C10699\r\n", "Processing chromosome C10699\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:06,618] [Preprocessor.java:241] [main] Processing chromosome C10741\r\n", "Processing chromosome C10741\r\n", "INFO [2014-03-08 06:23:06,647] [Preprocessor.java:241] [main] Processing chromosome C10759\r\n", "Processing chromosome C10759\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:06,682] [Preprocessor.java:241] [main] Processing chromosome C10765\r\n", "Processing chromosome C10765\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:06,760] [Preprocessor.java:241] [main] Processing chromosome C10775\r\n", "Processing chromosome C10775\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:06,825] [Preprocessor.java:241] [main] Processing chromosome C10803\r\n", "Processing chromosome C10803\r\n", "INFO [2014-03-08 06:23:06,850] [Preprocessor.java:241] [main] Processing chromosome C1081\r\n", "Processing chromosome C1081\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:06,936] [Preprocessor.java:241] [main] Processing chromosome C10811\r\n", "Processing chromosome C10811\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:06,996] [Preprocessor.java:241] [main] Processing chromosome C10819\r\n", "Processing chromosome C10819\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:07,132] [Preprocessor.java:241] [main] Processing chromosome C10821\r\n", "Processing chromosome C10821\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:07,180] [Preprocessor.java:241] [main] Processing chromosome C10829\r\n", "Processing chromosome C10829\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:07,249] [Preprocessor.java:241] [main] Processing chromosome C10833\r\n", "Processing chromosome C10833\r\n", "INFO [2014-03-08 06:23:07,291] [Preprocessor.java:241] [main] Processing chromosome C10837\r\n", "Processing chromosome C10837\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:07,315] [Preprocessor.java:241] [main] Processing chromosome C10871\r\n", "Processing chromosome C10871\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:07,385] [Preprocessor.java:241] [main] Processing chromosome C10881\r\n", "Processing chromosome C10881\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:07,439] [Preprocessor.java:241] [main] Processing chromosome C10897\r\n", "Processing chromosome C10897\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:07,470] [Preprocessor.java:241] [main] Processing chromosome C10901\r\n", "Processing chromosome C10901\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:07,551] [Preprocessor.java:241] [main] Processing chromosome C10905\r\n", "Processing chromosome C10905\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:07,654] [Preprocessor.java:241] [main] Processing chromosome C10941\r\n", "Processing chromosome C10941\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:07,701] [Preprocessor.java:241] [main] Processing chromosome C10947\r\n", "Processing chromosome C10947\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:07,762] [Preprocessor.java:241] [main] Processing chromosome C10955\r\n", "Processing chromosome C10955\r\n", "INFO [2014-03-08 06:23:07,813] [Preprocessor.java:241] [main] Processing chromosome C10959\r\n", "Processing chromosome C10959\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:07,877] [Preprocessor.java:241] [main] Processing chromosome C10961\r\n", "Processing chromosome C10961\r\n", "INFO [2014-03-08 06:23:07,898] [Preprocessor.java:241] [main] Processing chromosome C10963\r\n", "Processing chromosome C10963\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:07,966] [Preprocessor.java:241] [main] Processing chromosome C10967\r\n", "Processing chromosome C10967\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:08,006] [Preprocessor.java:241] [main] Processing chromosome C10999\r\n", "Processing chromosome C10999\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:08,053] [Preprocessor.java:241] [main] Processing chromosome C11001\r\n", "Processing chromosome C11001\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:08,109] [Preprocessor.java:241] [main] Processing chromosome C11027\r\n", "Processing chromosome C11027\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:08,202] [Preprocessor.java:241] [main] Processing chromosome C11031\r\n", "Processing chromosome C11031\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:08,246] [Preprocessor.java:241] [main] Processing chromosome C11057\r\n", "Processing chromosome C11057\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:08,296] [Preprocessor.java:241] [main] Processing chromosome C11061\r\n", "Processing chromosome C11061\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:08,365] [Preprocessor.java:241] [main] Processing chromosome C11065\r\n", "Processing chromosome C11065\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:08,411] [Preprocessor.java:241] [main] Processing chromosome C11081\r\n", "Processing chromosome C11081\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:08,462] [Preprocessor.java:241] [main] Processing chromosome C11083\r\n", "Processing chromosome C11083\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:08,511] [Preprocessor.java:241] [main] Processing chromosome C11085\r\n", "Processing chromosome C11085\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:08,551] [Preprocessor.java:241] [main] Processing chromosome C11095\r\n", "Processing chromosome C11095\r\n", "INFO [2014-03-08 06:23:08,575] [Preprocessor.java:241] [main] Processing chromosome C11125\r\n", "Processing chromosome C11125\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:08,638] [Preprocessor.java:241] [main] Processing chromosome C1113\r\n", "Processing chromosome C1113\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:08,684] [Preprocessor.java:241] [main] Processing chromosome C11133\r\n", "Processing chromosome C11133\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:08,787] [Preprocessor.java:241] [main] Processing chromosome C11143\r\n", "Processing chromosome C11143\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:08,823] [Preprocessor.java:241] [main] Processing chromosome C11175\r\n", "Processing chromosome C11175\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:08,919] [Preprocessor.java:241] [main] Processing chromosome C11177\r\n", "Processing chromosome C11177\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:08,959] [Preprocessor.java:241] [main] Processing chromosome C11191\r\n", "Processing chromosome C11191\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:09,054] [Preprocessor.java:241] [main] Processing chromosome C11193\r\n", "Processing chromosome C11193\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:09,107] [Preprocessor.java:241] [main] Processing chromosome C11207\r\n", "Processing chromosome C11207\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:09,176] [Preprocessor.java:241] [main] Processing chromosome C11211\r\n", "Processing chromosome C11211\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:09,220] [Preprocessor.java:241] [main] Processing chromosome C11215\r\n", "Processing chromosome C11215\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:09,272] [Preprocessor.java:241] [main] Processing chromosome C11223\r\n", "Processing chromosome C11223\r\n", "INFO [2014-03-08 06:23:09,304] [Preprocessor.java:241] [main] Processing chromosome C11227\r\n", "Processing chromosome C11227\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:09,398] [Preprocessor.java:241] [main] Processing chromosome C1123\r\n", "Processing chromosome C1123\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:09,573] [Preprocessor.java:241] [main] Processing chromosome C11268\r\n", "Processing chromosome C11268\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:09,601] [Preprocessor.java:241] [main] Processing chromosome C11270\r\n", "Processing chromosome C11270\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:09,650] [Preprocessor.java:241] [main] Processing chromosome C11278\r\n", "Processing chromosome C11278\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:09,705] [Preprocessor.java:241] [main] Processing chromosome C11282\r\n", "Processing chromosome C11282\r\n", "INFO [2014-03-08 06:23:09,734] [Preprocessor.java:241] [main] Processing chromosome C11288\r\n", "Processing chromosome C11288\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:09,800] [Preprocessor.java:241] [main] Processing chromosome C11292\r\n", "Processing chromosome C11292\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:09,851] [Preprocessor.java:241] [main] Processing chromosome C11302\r\n", "Processing chromosome C11302\r\n", "INFO [2014-03-08 06:23:09,877] [Preprocessor.java:241] [main] Processing chromosome C11304\r\n", "Processing chromosome C11304\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:09,976] [Preprocessor.java:241] [main] Processing chromosome C11350\r\n", "Processing chromosome C11350\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:10,145] [Preprocessor.java:241] [main] Processing chromosome C11352\r\n", "Processing chromosome C11352\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:10,264] [Preprocessor.java:241] [main] Processing chromosome C11358\r\n", "Processing chromosome C11358\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:10,412] [Preprocessor.java:241] [main] Processing chromosome C11366\r\n", "Processing chromosome C11366\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:10,465] [Preprocessor.java:241] [main] Processing chromosome C11372\r\n", "Processing chromosome C11372\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:10,545] [Preprocessor.java:241] [main] Processing chromosome C11400\r\n", "Processing chromosome C11400\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:10,631] [Preprocessor.java:241] [main] Processing chromosome C11402\r\n", "Processing chromosome C11402\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:10,740] [Preprocessor.java:241] [main] Processing chromosome C11408\r\n", "Processing chromosome C11408\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:10,816] [Preprocessor.java:241] [main] Processing chromosome C11410\r\n", "Processing chromosome C11410\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:10,873] [Preprocessor.java:241] [main] Processing chromosome C11416\r\n", "Processing chromosome C11416\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:10,939] [Preprocessor.java:241] [main] Processing chromosome C11422\r\n", "Processing chromosome C11422\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:11,018] [Preprocessor.java:241] [main] Processing chromosome C11428\r\n", "Processing chromosome C11428\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:11,075] [Preprocessor.java:241] [main] Processing chromosome C11468\r\n", "Processing chromosome C11468\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:11,132] [Preprocessor.java:241] [main] Processing chromosome C11474\r\n", "Processing chromosome C11474\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:11,193] [Preprocessor.java:241] [main] Processing chromosome C11476\r\n", "Processing chromosome C11476\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:11,232] [Preprocessor.java:241] [main] Processing chromosome C11478\r\n", "Processing chromosome C11478\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:11,280] [Preprocessor.java:241] [main] Processing chromosome C11488\r\n", "Processing chromosome C11488\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:11,350] [Preprocessor.java:241] [main] Processing chromosome C11490\r\n", "Processing chromosome C11490\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:11,422] [Preprocessor.java:241] [main] Processing chromosome C11496\r\n", "Processing chromosome C11496\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:11,534] [Preprocessor.java:241] [main] Processing chromosome C11500\r\n", "Processing chromosome C11500\r\n", "INFO [2014-03-08 06:23:11,573] [Preprocessor.java:241] [main] Processing chromosome C1151\r\n", "Processing chromosome C1151\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:11,648] [Preprocessor.java:241] [main] Processing chromosome C11532\r\n", "Processing chromosome C11532\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:11,702] [Preprocessor.java:241] [main] Processing chromosome C11540\r\n", "Processing chromosome C11540\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:11,738] [Preprocessor.java:241] [main] Processing chromosome C1155\r\n", "Processing chromosome C1155\r\n", "INFO [2014-03-08 06:23:11,789] [Preprocessor.java:241] [main] Processing chromosome C11552\r\n", "Processing chromosome C11552\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:11,871] [Preprocessor.java:241] [main] Processing chromosome C11558\r\n", "Processing chromosome C11558\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:11,955] [Preprocessor.java:241] [main] Processing chromosome C11560\r\n", "Processing chromosome C11560\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:12,049] [Preprocessor.java:241] [main] Processing chromosome C11568\r\n", "Processing chromosome C11568\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:12,104] [Preprocessor.java:241] [main] Processing chromosome C1157\r\n", "Processing chromosome C1157\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:12,153] [Preprocessor.java:241] [main] Processing chromosome C11570\r\n", "Processing chromosome C11570\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:12,233] [Preprocessor.java:241] [main] Processing chromosome C11572\r\n", "Processing chromosome C11572\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:12,280] [Preprocessor.java:241] [main] Processing chromosome C11574\r\n", "Processing chromosome C11574\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:12,362] [Preprocessor.java:241] [main] Processing chromosome C1161\r\n", "Processing chromosome C1161\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:12,410] [Preprocessor.java:241] [main] Processing chromosome C11614\r\n", "Processing chromosome C11614\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:12,487] [Preprocessor.java:241] [main] Processing chromosome C11620\r\n", "Processing chromosome C11620\r\n", "INFO [2014-03-08 06:23:12,513] [Preprocessor.java:241] [main] Processing chromosome C11636\r\n", "Processing chromosome C11636\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:12,646] [Preprocessor.java:241] [main] Processing chromosome C11638\r\n", "Processing chromosome C11638\r\n", "INFO [2014-03-08 06:23:12,680] [Preprocessor.java:241] [main] Processing chromosome C11646\r\n", "Processing chromosome C11646\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:12,790] [Preprocessor.java:241] [main] Processing chromosome C1169\r\n", "Processing chromosome C1169\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:12,867] [Preprocessor.java:241] [main] Processing chromosome C11690\r\n", "Processing chromosome C11690\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:12,923] [Preprocessor.java:241] [main] Processing chromosome C11702\r\n", "Processing chromosome C11702\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:13,004] [Preprocessor.java:241] [main] Processing chromosome C11706\r\n", "Processing chromosome C11706\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:13,109] [Preprocessor.java:241] [main] Processing chromosome C11708\r\n", "Processing chromosome C11708\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:13,206] [Preprocessor.java:241] [main] Processing chromosome C11734\r\n", "Processing chromosome C11734\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:13,350] [Preprocessor.java:241] [main] Processing chromosome C1175\r\n", "Processing chromosome C1175\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:13,429] [Preprocessor.java:241] [main] Processing chromosome C11756\r\n", "Processing chromosome C11756\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:13,454] [Preprocessor.java:241] [main] Processing chromosome C11758\r\n", "Processing chromosome C11758\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:13,529] [Preprocessor.java:241] [main] Processing chromosome C11768\r\n", "Processing chromosome C11768\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:13,666] [Preprocessor.java:241] [main] Processing chromosome C1177\r\n", "Processing chromosome C1177\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:13,741] [Preprocessor.java:241] [main] Processing chromosome C11776\r\n", "Processing chromosome C11776\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:13,782] [Preprocessor.java:241] [main] Processing chromosome C11806\r\n", "Processing chromosome C11806\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:13,805] [Preprocessor.java:241] [main] Processing chromosome C11812\r\n", "Processing chromosome C11812\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:13,888] [Preprocessor.java:241] [main] Processing chromosome C11814\r\n", "Processing chromosome C11814\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:13,994] [Preprocessor.java:241] [main] Processing chromosome C11816\r\n", "Processing chromosome C11816\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:14,047] [Preprocessor.java:241] [main] Processing chromosome C11858\r\n", "Processing chromosome C11858\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:14,102] [Preprocessor.java:241] [main] Processing chromosome C11864\r\n", "Processing chromosome C11864\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:14,150] [Preprocessor.java:241] [main] Processing chromosome C11868\r\n", "Processing chromosome C11868\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:14,238] [Preprocessor.java:241] [main] Processing chromosome C11876\r\n", "Processing chromosome C11876\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:14,310] [Preprocessor.java:241] [main] Processing chromosome C11894\r\n", "Processing chromosome C11894\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:14,365] [Preprocessor.java:241] [main] Processing chromosome C1191\r\n", "Processing chromosome C1191\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:14,536] [Preprocessor.java:241] [main] Processing chromosome C11942\r\n", "Processing chromosome C11942\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:14,646] [Preprocessor.java:241] [main] Processing chromosome C11950\r\n", "Processing chromosome C11950\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:14,722] [Preprocessor.java:241] [main] Processing chromosome C11962\r\n", "Processing chromosome C11962\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:14,789] [Preprocessor.java:241] [main] Processing chromosome C11970\r\n", "Processing chromosome C11970\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:14,860] [Preprocessor.java:241] [main] Processing chromosome C12004\r\n", "Processing chromosome C12004\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:14,953] [Preprocessor.java:241] [main] Processing chromosome C12006\r\n", "Processing chromosome C12006\r\n", "INFO [2014-03-08 06:23:14,975] [Preprocessor.java:241] [main] Processing chromosome C12008\r\n", "Processing chromosome C12008\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:15,078] [Preprocessor.java:241] [main] Processing chromosome C12032\r\n", "Processing chromosome C12032\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:15,121] [Preprocessor.java:241] [main] Processing chromosome C12034\r\n", "Processing chromosome C12034\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:15,260] [Preprocessor.java:241] [main] Processing chromosome C1205\r\n", "Processing chromosome C1205\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:15,370] [Preprocessor.java:241] [main] Processing chromosome C12054\r\n", "Processing chromosome C12054\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:15,394] [Preprocessor.java:241] [main] Processing chromosome C12056\r\n", "Processing chromosome C12056\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:15,495] [Preprocessor.java:241] [main] Processing chromosome C12058\r\n", "Processing chromosome C12058\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:15,557] [Preprocessor.java:241] [main] Processing chromosome C12062\r\n", "Processing chromosome C12062\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:15,640] [Preprocessor.java:241] [main] Processing chromosome C12064\r\n", "Processing chromosome C12064\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:15,673] [Preprocessor.java:241] [main] Processing chromosome C12066\r\n", "Processing chromosome C12066\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:15,733] [Preprocessor.java:241] [main] Processing chromosome C12068\r\n", "Processing chromosome C12068\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:15,791] [Preprocessor.java:241] [main] Processing chromosome C1207\r\n", "Processing chromosome C1207\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:15,868] [Preprocessor.java:241] [main] Processing chromosome C12106\r\n", "Processing chromosome C12106\r\n", "INFO [2014-03-08 06:23:15,891] [Preprocessor.java:241] [main] Processing chromosome C12108\r\n", "Processing chromosome C12108\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:15,979] [Preprocessor.java:241] [main] Processing chromosome C12110\r\n", "Processing chromosome C12110\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:16,055] [Preprocessor.java:241] [main] Processing chromosome C12122\r\n", "Processing chromosome C12122\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:16,094] [Preprocessor.java:241] [main] Processing chromosome C12146\r\n", "Processing chromosome C12146\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:16,148] [Preprocessor.java:241] [main] Processing chromosome C12152\r\n", "Processing chromosome C12152\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:16,189] [Preprocessor.java:241] [main] Processing chromosome C12166\r\n", "Processing chromosome C12166\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:16,244] [Preprocessor.java:241] [main] Processing chromosome C12206\r\n", "Processing chromosome C12206\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:16,356] [Preprocessor.java:241] [main] Processing chromosome C12216\r\n", "Processing chromosome C12216\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:16,447] [Preprocessor.java:241] [main] Processing chromosome C12220\r\n", "Processing chromosome C12220\r\n", "INFO [2014-03-08 06:23:16,470] [Preprocessor.java:241] [main] Processing chromosome C12252\r\n", "Processing chromosome C12252\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:16,553] [Preprocessor.java:241] [main] Processing chromosome C12264\r\n", "Processing chromosome C12264\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:16,618] [Preprocessor.java:241] [main] Processing chromosome C12274\r\n", "Processing chromosome C12274\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:16,675] [Preprocessor.java:241] [main] Processing chromosome C12282\r\n", "Processing chromosome C12282\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:16,712] [Preprocessor.java:241] [main] Processing chromosome C12298\r\n", "Processing chromosome C12298\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:16,794] [Preprocessor.java:241] [main] Processing chromosome C12314\r\n", "Processing chromosome C12314\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:16,845] [Preprocessor.java:241] [main] Processing chromosome C12316\r\n", "Processing chromosome C12316\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:16,983] [Preprocessor.java:241] [main] Processing chromosome C12320\r\n", "Processing chromosome C12320\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:17,056] [Preprocessor.java:241] [main] Processing chromosome C12324\r\n", "Processing chromosome C12324\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:17,088] [Preprocessor.java:241] [main] Processing chromosome C12328\r\n", "Processing chromosome C12328\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:17,154] [Preprocessor.java:241] [main] Processing chromosome C12366\r\n", "Processing chromosome C12366\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:17,194] [Preprocessor.java:241] [main] Processing chromosome C12368\r\n", "Processing chromosome C12368\r\n", "INFO [2014-03-08 06:23:17,230] [Preprocessor.java:241] [main] Processing chromosome C12376\r\n", "Processing chromosome C12376\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:17,307] [Preprocessor.java:241] [main] Processing chromosome C12386\r\n", "Processing chromosome C12386\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:17,362] [Preprocessor.java:241] [main] Processing chromosome C12388\r\n", "Processing chromosome C12388\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:17,416] [Preprocessor.java:241] [main] Processing chromosome C12390\r\n", "Processing chromosome C12390\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:17,482] [Preprocessor.java:241] [main] Processing chromosome C12392\r\n", "Processing chromosome C12392\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:17,557] [Preprocessor.java:241] [main] Processing chromosome C12412\r\n", "Processing chromosome C12412\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:17,710] [Preprocessor.java:241] [main] Processing chromosome C12420\r\n", "Processing chromosome C12420\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:17,779] [Preprocessor.java:241] [main] Processing chromosome C12426\r\n", "Processing chromosome C12426\r\n", "INFO [2014-03-08 06:23:17,816] [Preprocessor.java:241] [main] Processing chromosome C12428\r\n", "Processing chromosome C12428\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:17,866] [Preprocessor.java:241] [main] Processing chromosome C12430\r\n", "Processing chromosome C12430\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:17,887] [Preprocessor.java:241] [main] Processing chromosome C12438\r\n", "Processing chromosome C12438\r\n", "INFO [2014-03-08 06:23:17,920] [Preprocessor.java:241] [main] Processing chromosome C12478\r\n", "Processing chromosome C12478\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:17,980] [Preprocessor.java:241] [main] Processing chromosome C12480\r\n", "Processing chromosome C12480\r\n", "INFO [2014-03-08 06:23:18,010] [Preprocessor.java:241] [main] Processing chromosome C12484\r\n", "Processing chromosome C12484\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:18,097] [Preprocessor.java:241] [main] Processing chromosome C12492\r\n", "Processing chromosome C12492\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:18,228] [Preprocessor.java:241] [main] Processing chromosome C12494\r\n", "Processing chromosome C12494\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:18,301] [Preprocessor.java:241] [main] Processing chromosome C12504\r\n", "Processing chromosome C12504\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:18,402] [Preprocessor.java:241] [main] Processing chromosome C12506\r\n", "Processing chromosome C12506\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:18,444] [Preprocessor.java:241] [main] Processing chromosome C12508\r\n", "Processing chromosome C12508\r\n", "INFO [2014-03-08 06:23:18,486] [Preprocessor.java:241] [main] Processing chromosome C12534\r\n", "Processing chromosome C12534\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:18,537] [Preprocessor.java:241] [main] Processing chromosome C12538\r\n", "Processing chromosome C12538\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:18,578] [Preprocessor.java:241] [main] Processing chromosome C12540\r\n", "Processing chromosome C12540\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:18,638] [Preprocessor.java:241] [main] Processing chromosome C12542\r\n", "Processing chromosome C12542\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:18,690] [Preprocessor.java:241] [main] Processing chromosome C12548\r\n", "Processing chromosome C12548\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:18,774] [Preprocessor.java:241] [main] Processing chromosome C12552\r\n", "Processing chromosome C12552\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:18,805] [Preprocessor.java:241] [main] Processing chromosome C12558\r\n", "Processing chromosome C12558\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:18,851] [Preprocessor.java:241] [main] Processing chromosome C12584\r\n", "Processing chromosome C12584\r\n", "INFO [2014-03-08 06:23:18,891] [Preprocessor.java:241] [main] Processing chromosome C12590\r\n", "Processing chromosome C12590\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:18,945] [Preprocessor.java:241] [main] Processing chromosome C12592\r\n", "Processing chromosome C12592\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:18,965] [Preprocessor.java:241] [main] Processing chromosome C12618\r\n", "Processing chromosome C12618\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:19,073] [Preprocessor.java:241] [main] Processing chromosome C12622\r\n", "Processing chromosome C12622\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:19,117] [Preprocessor.java:241] [main] Processing chromosome C12658\r\n", "Processing chromosome C12658\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:19,166] [Preprocessor.java:241] [main] Processing chromosome C12660\r\n", "Processing chromosome C12660\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:19,225] [Preprocessor.java:241] [main] Processing chromosome C12662\r\n", "Processing chromosome C12662\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:19,287] [Preprocessor.java:241] [main] Processing chromosome C12682\r\n", "Processing chromosome C12682\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:19,323] [Preprocessor.java:241] [main] Processing chromosome C12708\r\n", "Processing chromosome C12708\r\n", "INFO [2014-03-08 06:23:19,359] [Preprocessor.java:241] [main] Processing chromosome C12718\r\n", "Processing chromosome C12718\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:19,381] [Preprocessor.java:241] [main] Processing chromosome C12722\r\n", "Processing chromosome C12722\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:19,426] [Preprocessor.java:241] [main] Processing chromosome C12724\r\n", "Processing chromosome C12724\r\n", "INFO [2014-03-08 06:23:19,474] [Preprocessor.java:241] [main] Processing chromosome C12738\r\n", "Processing chromosome C12738\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:19,525] [Preprocessor.java:241] [main] Processing chromosome C12748\r\n", "Processing chromosome C12748\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:19,566] [Preprocessor.java:241] [main] Processing chromosome C12758\r\n", "Processing chromosome C12758\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:19,640] [Preprocessor.java:241] [main] Processing chromosome C12760\r\n", "Processing chromosome C12760\r\n", "INFO [2014-03-08 06:23:19,679] [Preprocessor.java:241] [main] Processing chromosome C12764\r\n", "Processing chromosome C12764\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:19,757] [Preprocessor.java:241] [main] Processing chromosome C12778\r\n", "Processing chromosome C12778\r\n", "INFO [2014-03-08 06:23:19,777] [Preprocessor.java:241] [main] Processing chromosome C12786\r\n", "Processing chromosome C12786\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:19,812] [Preprocessor.java:241] [main] Processing chromosome C12798\r\n", "Processing chromosome C12798\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:19,895] [Preprocessor.java:241] [main] Processing chromosome C12814\r\n", "Processing chromosome C12814\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:19,950] [Preprocessor.java:241] [main] Processing chromosome C12830\r\n", "Processing chromosome C12830\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:20,009] [Preprocessor.java:241] [main] Processing chromosome C12832\r\n", "Processing chromosome C12832\r\n", "INFO [2014-03-08 06:23:20,030] [Preprocessor.java:241] [main] Processing chromosome C12838\r\n", "Processing chromosome C12838\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:20,128] [Preprocessor.java:241] [main] Processing chromosome C12840\r\n", "Processing chromosome C12840\r\n", "INFO [2014-03-08 06:23:20,153] [Preprocessor.java:241] [main] Processing chromosome C12848\r\n", "Processing chromosome C12848\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:20,196] [Preprocessor.java:241] [main] Processing chromosome C12882\r\n", "Processing chromosome C12882\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:20,291] [Preprocessor.java:241] [main] Processing chromosome C12906\r\n", "Processing chromosome C12906\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:20,322] [Preprocessor.java:241] [main] Processing chromosome C12916\r\n", "Processing chromosome C12916\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:20,431] [Preprocessor.java:241] [main] Processing chromosome C12928\r\n", "Processing chromosome C12928\r\n", "INFO [2014-03-08 06:23:20,470] [Preprocessor.java:241] [main] Processing chromosome C12930\r\n", "Processing chromosome C12930\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:20,542] [Preprocessor.java:241] [main] Processing chromosome C12932\r\n", "Processing chromosome C12932\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:20,613] [Preprocessor.java:241] [main] Processing chromosome C12934\r\n", "Processing chromosome C12934\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:20,694] [Preprocessor.java:241] [main] Processing chromosome C12938\r\n", "Processing chromosome C12938\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:20,771] [Preprocessor.java:241] [main] Processing chromosome C12970\r\n", "Processing chromosome C12970\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:20,831] [Preprocessor.java:241] [main] Processing chromosome C12972\r\n", "Processing chromosome C12972\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:20,916] [Preprocessor.java:241] [main] Processing chromosome C12974\r\n", "Processing chromosome C12974\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:20,977] [Preprocessor.java:241] [main] Processing chromosome C12984\r\n", "Processing chromosome C12984\r\n", "INFO [2014-03-08 06:23:21,004] [Preprocessor.java:241] [main] Processing chromosome C13016\r\n", "Processing chromosome C13016\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:21,069] [Preprocessor.java:241] [main] Processing chromosome C13020\r\n", "Processing chromosome C13020\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:21,139] [Preprocessor.java:241] [main] Processing chromosome C13026\r\n", "Processing chromosome C13026\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:21,193] [Preprocessor.java:241] [main] Processing chromosome C13028\r\n", "Processing chromosome C13028\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:21,265] [Preprocessor.java:241] [main] Processing chromosome C1305\r\n", "Processing chromosome C1305\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:21,326] [Preprocessor.java:241] [main] Processing chromosome C13050\r\n", "Processing chromosome C13050\r\n", "INFO [2014-03-08 06:23:21,346] [Preprocessor.java:241] [main] Processing chromosome C13052\r\n", "Processing chromosome C13052\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:21,442] [Preprocessor.java:241] [main] Processing chromosome C13054\r\n", "Processing chromosome C13054\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:21,483] [Preprocessor.java:241] [main] Processing chromosome C13080\r\n", "Processing chromosome C13080\r\n", "INFO [2014-03-08 06:23:21,502] [Preprocessor.java:241] [main] Processing chromosome C13094\r\n", "Processing chromosome C13094\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:21,541] [Preprocessor.java:241] [main] Processing chromosome C13098\r\n", "Processing chromosome C13098\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:21,648] [Preprocessor.java:241] [main] Processing chromosome C13134\r\n", "Processing chromosome C13134\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:21,729] [Preprocessor.java:241] [main] Processing chromosome C13136\r\n", "Processing chromosome C13136\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:21,801] [Preprocessor.java:241] [main] Processing chromosome C13140\r\n", "Processing chromosome C13140\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:21,860] [Preprocessor.java:241] [main] Processing chromosome C13156\r\n", "Processing chromosome C13156\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:21,931] [Preprocessor.java:241] [main] Processing chromosome C13164\r\n", "Processing chromosome C13164\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:21,955] [Preprocessor.java:241] [main] Processing chromosome C13178\r\n", "Processing chromosome C13178\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:22,022] [Preprocessor.java:241] [main] Processing chromosome C13180\r\n", "Processing chromosome C13180\r\n", "INFO [2014-03-08 06:23:22,043] [Preprocessor.java:241] [main] Processing chromosome C13186\r\n", "Processing chromosome C13186\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:22,100] [Preprocessor.java:241] [main] Processing chromosome C1319\r\n", "Processing chromosome C1319\r\n", "INFO [2014-03-08 06:23:22,147] [Preprocessor.java:241] [main] Processing chromosome C13208\r\n", "Processing chromosome C13208\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:22,207] [Preprocessor.java:241] [main] Processing chromosome C13218\r\n", "Processing chromosome C13218\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:22,257] [Preprocessor.java:241] [main] Processing chromosome C13266\r\n", "Processing chromosome C13266\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:22,300] [Preprocessor.java:241] [main] Processing chromosome C13268\r\n", "Processing chromosome C13268\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:22,378] [Preprocessor.java:241] [main] Processing chromosome C13320\r\n", "Processing chromosome C13320\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:22,454] [Preprocessor.java:241] [main] Processing chromosome C13324\r\n", "Processing chromosome C13324\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:22,473] [Preprocessor.java:241] [main] Processing chromosome C13326\r\n", "Processing chromosome C13326\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:22,529] [Preprocessor.java:241] [main] Processing chromosome C13328\r\n", "Processing chromosome C13328\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:22,603] [Preprocessor.java:241] [main] Processing chromosome C13346\r\n", "Processing chromosome C13346\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:22,627] [Preprocessor.java:241] [main] Processing chromosome C13370\r\n", "Processing chromosome C13370\r\n", "INFO [2014-03-08 06:23:22,670] [Preprocessor.java:241] [main] Processing chromosome C13396\r\n", "Processing chromosome C13396\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:22,711] [Preprocessor.java:241] [main] Processing chromosome C13406\r\n", "Processing chromosome C13406\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:22,784] [Preprocessor.java:241] [main] Processing chromosome C13424\r\n", "Processing chromosome C13424\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:22,805] [Preprocessor.java:241] [main] Processing chromosome C13440\r\n", "Processing chromosome C13440\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:22,883] [Preprocessor.java:241] [main] Processing chromosome C13460\r\n", "Processing chromosome C13460\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:22,905] [Preprocessor.java:241] [main] Processing chromosome C13462\r\n", "Processing chromosome C13462\r\n", "INFO [2014-03-08 06:23:22,937] [Preprocessor.java:241] [main] Processing chromosome C13466\r\n", "Processing chromosome C13466\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:22,989] [Preprocessor.java:241] [main] Processing chromosome C13508\r\n", "Processing chromosome C13508\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:23,101] [Preprocessor.java:241] [main] Processing chromosome C13512\r\n", "Processing chromosome C13512\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:23,168] [Preprocessor.java:241] [main] Processing chromosome C13516\r\n", "Processing chromosome C13516\r\n", "INFO [2014-03-08 06:23:23,195] [Preprocessor.java:241] [main] Processing chromosome C13528\r\n", "Processing chromosome C13528\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:23,267] [Preprocessor.java:241] [main] Processing chromosome C13532\r\n", "Processing chromosome C13532\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:23,351] [Preprocessor.java:241] [main] Processing chromosome C13552\r\n", "Processing chromosome C13552\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:23,435] [Preprocessor.java:241] [main] Processing chromosome C13584\r\n", "Processing chromosome C13584\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:23,511] [Preprocessor.java:241] [main] Processing chromosome C13590\r\n", "Processing chromosome C13590\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:23,565] [Preprocessor.java:241] [main] Processing chromosome C13592\r\n", "Processing chromosome C13592\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:23,657] [Preprocessor.java:241] [main] Processing chromosome C13600\r\n", "Processing chromosome C13600\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:23,683] [Preprocessor.java:241] [main] Processing chromosome C13614\r\n", "Processing chromosome C13614\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:23,776] [Preprocessor.java:241] [main] Processing chromosome C13652\r\n", "Processing chromosome C13652\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:23,808] [Preprocessor.java:241] [main] Processing chromosome C13654\r\n", "Processing chromosome C13654\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:23,859] [Preprocessor.java:241] [main] Processing chromosome C13666\r\n", "Processing chromosome C13666\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:23,906] [Preprocessor.java:241] [main] Processing chromosome C13690\r\n", "Processing chromosome C13690\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:23,977] [Preprocessor.java:241] [main] Processing chromosome C13732\r\n", "Processing chromosome C13732\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:24,030] [Preprocessor.java:241] [main] Processing chromosome C1377\r\n", "Processing chromosome C1377\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:24,068] [Preprocessor.java:241] [main] Processing chromosome C13786\r\n", "Processing chromosome C13786\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:24,141] [Preprocessor.java:241] [main] Processing chromosome C13810\r\n", "Processing chromosome C13810\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:24,217] [Preprocessor.java:241] [main] Processing chromosome C1383\r\n", "Processing chromosome C1383\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:24,538] [Preprocessor.java:241] [main] Processing chromosome C13854\r\n", "Processing chromosome C13854\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:24,628] [Preprocessor.java:241] [main] Processing chromosome C13860\r\n", "Processing chromosome C13860\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:24,649] [Preprocessor.java:241] [main] Processing chromosome C13868\r\n", "Processing chromosome C13868\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:24,728] [Preprocessor.java:241] [main] Processing chromosome C13874\r\n", "Processing chromosome C13874\r\n", "INFO [2014-03-08 06:23:24,749] [Preprocessor.java:241] [main] Processing chromosome C13878\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "Processing chromosome C13878\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:24,830] [Preprocessor.java:241] [main] Processing chromosome C13888\r\n", "Processing chromosome C13888\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:24,895] [Preprocessor.java:241] [main] Processing chromosome C1389\r\n", "Processing chromosome C1389\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:24,978] [Preprocessor.java:241] [main] Processing chromosome C13904\r\n", "Processing chromosome C13904\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:25,019] [Preprocessor.java:241] [main] Processing chromosome C13908\r\n", "Processing chromosome C13908\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:25,078] [Preprocessor.java:241] [main] Processing chromosome C13916\r\n", "Processing chromosome C13916\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:25,120] [Preprocessor.java:241] [main] Processing chromosome C13930\r\n", "Processing chromosome C13930\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:25,175] [Preprocessor.java:241] [main] Processing chromosome C13940\r\n", "Processing chromosome C13940\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:25,285] [Preprocessor.java:241] [main] Processing chromosome C13950\r\n", "Processing chromosome C13950\r\n", "INFO [2014-03-08 06:23:25,321] [Preprocessor.java:241] [main] Processing chromosome C13992\r\n", "Processing chromosome C13992\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:25,363] [Preprocessor.java:241] [main] Processing chromosome C14008\r\n", "Processing chromosome C14008\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:25,416] [Preprocessor.java:241] [main] Processing chromosome C14022\r\n", "Processing chromosome C14022\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:25,528] [Preprocessor.java:241] [main] Processing chromosome C14066\r\n", "Processing chromosome C14066\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:25,603] [Preprocessor.java:241] [main] Processing chromosome C14086\r\n", "Processing chromosome C14086\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:25,645] [Preprocessor.java:241] [main] Processing chromosome C14104\r\n", "Processing chromosome C14104\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:25,761] [Preprocessor.java:241] [main] Processing chromosome C14108\r\n", "Processing chromosome C14108\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:25,813] [Preprocessor.java:241] [main] Processing chromosome C14128\r\n", "Processing chromosome C14128\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:25,884] [Preprocessor.java:241] [main] Processing chromosome C14162\r\n", "Processing chromosome C14162\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:25,939] [Preprocessor.java:241] [main] Processing chromosome C14170\r\n", "Processing chromosome C14170\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:25,971] [Preprocessor.java:241] [main] Processing chromosome C14184\r\n", "Processing chromosome C14184\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:26,109] [Preprocessor.java:241] [main] Processing chromosome C14186\r\n", "Processing chromosome C14186\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:26,195] [Preprocessor.java:241] [main] Processing chromosome C14188\r\n", "Processing chromosome C14188\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:26,241] [Preprocessor.java:241] [main] Processing chromosome C14214\r\n", "Processing chromosome C14214\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:26,350] [Preprocessor.java:241] [main] Processing chromosome C14226\r\n", "Processing chromosome C14226\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:26,406] [Preprocessor.java:241] [main] Processing chromosome C14228\r\n", "Processing chromosome C14228\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:26,451] [Preprocessor.java:241] [main] Processing chromosome C14248\r\n", "Processing chromosome C14248\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:26,542] [Preprocessor.java:241] [main] Processing chromosome C14276\r\n", "Processing chromosome C14276\r\n", "INFO [2014-03-08 06:23:26,569] [Preprocessor.java:241] [main] Processing chromosome C14282\r\n", "Processing chromosome C14282\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:26,653] [Preprocessor.java:241] [main] Processing chromosome C14304\r\n", "Processing chromosome C14304\r\n", "INFO [2014-03-08 06:23:26,672] [Preprocessor.java:241] [main] Processing chromosome C14326\r\n", "Processing chromosome C14326\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:26,759] [Preprocessor.java:241] [main] Processing chromosome C14340\r\n", "Processing chromosome C14340\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:26,894] [Preprocessor.java:241] [main] Processing chromosome C14362\r\n", "Processing chromosome C14362\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:26,981] [Preprocessor.java:241] [main] Processing chromosome C14366\r\n", "Processing chromosome C14366\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:27,014] [Preprocessor.java:241] [main] Processing chromosome C14378\r\n", "Processing chromosome C14378\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:27,075] [Preprocessor.java:241] [main] Processing chromosome C14384\r\n", "Processing chromosome C14384\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:27,108] [Preprocessor.java:241] [main] Processing chromosome C14386\r\n", "Processing chromosome C14386\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:27,182] [Preprocessor.java:241] [main] Processing chromosome C14400\r\n", "Processing chromosome C14400\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:27,271] [Preprocessor.java:241] [main] Processing chromosome C14418\r\n", "Processing chromosome C14418\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:27,404] [Preprocessor.java:241] [main] Processing chromosome C14424\r\n", "Processing chromosome C14424\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:27,500] [Preprocessor.java:241] [main] Processing chromosome C14432\r\n", "Processing chromosome C14432\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:27,634] [Preprocessor.java:241] [main] Processing chromosome C14434\r\n", "Processing chromosome C14434\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:27,706] [Preprocessor.java:241] [main] Processing chromosome C14446\r\n", "Processing chromosome C14446\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:27,762] [Preprocessor.java:241] [main] Processing chromosome C14450\r\n", "Processing chromosome C14450\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:27,814] [Preprocessor.java:241] [main] Processing chromosome C14454\r\n", "Processing chromosome C14454\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:27,847] [Preprocessor.java:241] [main] Processing chromosome C14468\r\n", "Processing chromosome C14468\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:27,941] [Preprocessor.java:241] [main] Processing chromosome C14478\r\n", "Processing chromosome C14478\r\n", "INFO [2014-03-08 06:23:27,961] [Preprocessor.java:241] [main] Processing chromosome C14484\r\n", "Processing chromosome C14484\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:28,027] [Preprocessor.java:241] [main] Processing chromosome C14486\r\n", "Processing chromosome C14486\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:28,050] [Preprocessor.java:241] [main] Processing chromosome C14498\r\n", "Processing chromosome C14498\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:28,134] [Preprocessor.java:241] [main] Processing chromosome C14510\r\n", "Processing chromosome C14510\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:28,184] [Preprocessor.java:241] [main] Processing chromosome C14520\r\n", "Processing chromosome C14520\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:28,270] [Preprocessor.java:241] [main] Processing chromosome C14528\r\n", "Processing chromosome C14528\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:28,341] [Preprocessor.java:241] [main] Processing chromosome C14542\r\n", "Processing chromosome C14542\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:28,397] [Preprocessor.java:241] [main] Processing chromosome C14546\r\n", "Processing chromosome C14546\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:28,440] [Preprocessor.java:241] [main] Processing chromosome C14560\r\n", "Processing chromosome C14560\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:28,503] [Preprocessor.java:241] [main] Processing chromosome C14566\r\n", "Processing chromosome C14566\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:28,563] [Preprocessor.java:241] [main] Processing chromosome C14568\r\n", "Processing chromosome C14568\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:28,630] [Preprocessor.java:241] [main] Processing chromosome C14588\r\n", "Processing chromosome C14588\r\n", "INFO [2014-03-08 06:23:28,657] [Preprocessor.java:241] [main] Processing chromosome C14614\r\n", "Processing chromosome C14614\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:28,714] [Preprocessor.java:241] [main] Processing chromosome C14626\r\n", "Processing chromosome C14626\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:28,730] [Preprocessor.java:241] [main] Processing chromosome C14636\r\n", "Processing chromosome C14636\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:28,786] [Preprocessor.java:241] [main] Processing chromosome C14638\r\n", "Processing chromosome C14638\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:28,829] [Preprocessor.java:241] [main] Processing chromosome C14652\r\n", "Processing chromosome C14652\r\n", "INFO [2014-03-08 06:23:28,866] [Preprocessor.java:241] [main] Processing chromosome C14668\r\n", "Processing chromosome C14668\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:28,907] [Preprocessor.java:241] [main] Processing chromosome C14678\r\n", "Processing chromosome C14678\r\n", "INFO [2014-03-08 06:23:28,927] [Preprocessor.java:241] [main] Processing chromosome C14686\r\n", "Processing chromosome C14686\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:28,950] [Preprocessor.java:241] [main] Processing chromosome C14692\r\n", "Processing chromosome C14692\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:29,016] [Preprocessor.java:241] [main] Processing chromosome C14702\r\n", "Processing chromosome C14702\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:29,042] [Preprocessor.java:241] [main] Processing chromosome C14704\r\n", "Processing chromosome C14704\r\n", "INFO [2014-03-08 06:23:29,058] [Preprocessor.java:241] [main] Processing chromosome C14706\r\n", "Processing chromosome C14706\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:29,124] [Preprocessor.java:241] [main] Processing chromosome C14716\r\n", "Processing chromosome C14716\r\n", "INFO [2014-03-08 06:23:29,141] [Preprocessor.java:241] [main] Processing chromosome C14718\r\n", "Processing chromosome C14718\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:29,177] [Preprocessor.java:241] [main] Processing chromosome C14724\r\n", "Processing chromosome C14724\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:29,241] [Preprocessor.java:241] [main] Processing chromosome C14734\r\n", "Processing chromosome C14734\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:29,307] [Preprocessor.java:241] [main] Processing chromosome C14744\r\n", "Processing chromosome C14744\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:29,373] [Preprocessor.java:241] [main] Processing chromosome C14746\r\n", "Processing chromosome C14746\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:29,415] [Preprocessor.java:241] [main] Processing chromosome C14774\r\n", "Processing chromosome C14774\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:29,495] [Preprocessor.java:241] [main] Processing chromosome C14782\r\n", "Processing chromosome C14782\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:29,549] [Preprocessor.java:241] [main] Processing chromosome C14788\r\n", "Processing chromosome C14788\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:29,610] [Preprocessor.java:241] [main] Processing chromosome C14790\r\n", "Processing chromosome C14790\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:29,677] [Preprocessor.java:241] [main] Processing chromosome C14800\r\n", "Processing chromosome C14800\r\n", "INFO [2014-03-08 06:23:29,718] [Preprocessor.java:241] [main] Processing chromosome C14818\r\n", "Processing chromosome C14818\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:29,790] [Preprocessor.java:241] [main] Processing chromosome C14822\r\n", "Processing chromosome C14822\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:29,828] [Preprocessor.java:241] [main] Processing chromosome C14832\r\n", "Processing chromosome C14832\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:29,892] [Preprocessor.java:241] [main] Processing chromosome C14848\r\n", "Processing chromosome C14848\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:29,947] [Preprocessor.java:241] [main] Processing chromosome C14852\r\n", "Processing chromosome C14852\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:29,993] [Preprocessor.java:241] [main] Processing chromosome C14858\r\n", "Processing chromosome C14858\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:30,059] [Preprocessor.java:241] [main] Processing chromosome C14868\r\n", "Processing chromosome C14868\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:30,132] [Preprocessor.java:241] [main] Processing chromosome C14880\r\n", "Processing chromosome C14880\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:30,190] [Preprocessor.java:241] [main] Processing chromosome C14902\r\n", "Processing chromosome C14902\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:30,258] [Preprocessor.java:241] [main] Processing chromosome C14906\r\n", "Processing chromosome C14906\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:30,322] [Preprocessor.java:241] [main] Processing chromosome C14910\r\n", "Processing chromosome C14910\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:30,372] [Preprocessor.java:241] [main] Processing chromosome C14924\r\n", "Processing chromosome C14924\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:30,423] [Preprocessor.java:241] [main] Processing chromosome C14940\r\n", "Processing chromosome C14940\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:30,474] [Preprocessor.java:241] [main] Processing chromosome C14942\r\n", "Processing chromosome C14942\r\n", "INFO [2014-03-08 06:23:30,490] [Preprocessor.java:241] [main] Processing chromosome C14944\r\n", "Processing chromosome C14944\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:30,549] [Preprocessor.java:241] [main] Processing chromosome C14946\r\n", "Processing chromosome C14946\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:30,616] [Preprocessor.java:241] [main] Processing chromosome C14952\r\n", "Processing chromosome C14952\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:30,677] [Preprocessor.java:241] [main] Processing chromosome C14958\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "Processing chromosome C14958\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:30,748] [Preprocessor.java:241] [main] Processing chromosome C14966\r\n", "Processing chromosome C14966\r\n", "INFO [2014-03-08 06:23:30,776] [Preprocessor.java:241] [main] Processing chromosome C14984\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "Processing chromosome C14984\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:30,858] [Preprocessor.java:241] [main] Processing chromosome C15006\r\n", "Processing chromosome C15006\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:30,928] [Preprocessor.java:241] [main] Processing chromosome C15022\r\n", "Processing chromosome C15022\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:30,995] [Preprocessor.java:241] [main] Processing chromosome C15024\r\n", "Processing chromosome C15024\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:31,083] [Preprocessor.java:241] [main] Processing chromosome C1503\r\n", "Processing chromosome C1503\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:31,178] [Preprocessor.java:241] [main] Processing chromosome C15064\r\n", "Processing chromosome C15064\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:31,240] [Preprocessor.java:241] [main] Processing chromosome C15086\r\n", "Processing chromosome C15086\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:31,262] [Preprocessor.java:241] [main] Processing chromosome C15112\r\n", "Processing chromosome C15112\r\n", "INFO [2014-03-08 06:23:31,305] [Preprocessor.java:241] [main] Processing chromosome C15138\r\n", "Processing chromosome C15138\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:31,332] [Preprocessor.java:241] [main] Processing chromosome C15142\r\n", "Processing chromosome C15142\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:31,373] [Preprocessor.java:241] [main] Processing chromosome C15154\r\n", "Processing chromosome C15154\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:31,423] [Preprocessor.java:241] [main] Processing chromosome C15160\r\n", "Processing chromosome C15160\r\n", "INFO [2014-03-08 06:23:31,432] [Preprocessor.java:241] [main] Processing chromosome C15162\r\n", "Processing chromosome C15162\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:31,473] [Preprocessor.java:241] [main] Processing chromosome C15164\r\n", "Processing chromosome C15164\r\n", "INFO [2014-03-08 06:23:31,493] [Preprocessor.java:241] [main] Processing chromosome C15180\r\n", "Processing chromosome C15180\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:31,572] [Preprocessor.java:241] [main] Processing chromosome C15188\r\n", "Processing chromosome C15188\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:31,642] [Preprocessor.java:241] [main] Processing chromosome C15202\r\n", "Processing chromosome C15202\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:31,695] [Preprocessor.java:241] [main] Processing chromosome C15240\r\n", "Processing chromosome C15240\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:31,770] [Preprocessor.java:241] [main] Processing chromosome C15242\r\n", "Processing chromosome C15242\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:31,876] [Preprocessor.java:241] [main] Processing chromosome C15260\r\n", "Processing chromosome C15260\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:31,962] [Preprocessor.java:241] [main] Processing chromosome C15276\r\n", "Processing chromosome C15276\r\n", "INFO [2014-03-08 06:23:31,980] [Preprocessor.java:241] [main] Processing chromosome C1531\r\n", "Processing chromosome C1531\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:32,054] [Preprocessor.java:241] [main] Processing chromosome C15324\r\n", "Processing chromosome C15324\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:32,096] [Preprocessor.java:241] [main] Processing chromosome C15334\r\n", "Processing chromosome C15334\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:32,112] [Preprocessor.java:241] [main] Processing chromosome C15338\r\n", "Processing chromosome C15338\r\n", "INFO [2014-03-08 06:23:32,158] [Preprocessor.java:241] [main] Processing chromosome C15340\r\n", "Processing chromosome C15340\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:32,222] [Preprocessor.java:241] [main] Processing chromosome C15342\r\n", "Processing chromosome C15342\r\n", "INFO [2014-03-08 06:23:32,238] [Preprocessor.java:241] [main] Processing chromosome C15346\r\n", "Processing chromosome C15346\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:32,308] [Preprocessor.java:241] [main] Processing chromosome C15348\r\n", "Processing chromosome C15348\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:32,330] [Preprocessor.java:241] [main] Processing chromosome C1535\r\n", "Processing chromosome C1535\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:32,378] [Preprocessor.java:241] [main] Processing chromosome C15352\r\n", "Processing chromosome C15352\r\n", "INFO [2014-03-08 06:23:32,417] [Preprocessor.java:241] [main] Processing chromosome C15386\r\n", "Processing chromosome C15386\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:32,486] [Preprocessor.java:241] [main] Processing chromosome C15404\r\n", "Processing chromosome C15404\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:32,540] [Preprocessor.java:241] [main] Processing chromosome C15424\r\n", "Processing chromosome C15424\r\n", "INFO [2014-03-08 06:23:32,555] [Preprocessor.java:241] [main] Processing chromosome C15430\r\n", "Processing chromosome C15430\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:32,597] [Preprocessor.java:241] [main] Processing chromosome C15436\r\n", "Processing chromosome C15436\r\n", "INFO [2014-03-08 06:23:32,611] [Preprocessor.java:241] [main] Processing chromosome C15440\r\n", "Processing chromosome C15440\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:32,667] [Preprocessor.java:241] [main] Processing chromosome C15448\r\n", "Processing chromosome C15448\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:32,728] [Preprocessor.java:241] [main] Processing chromosome C15458\r\n", "Processing chromosome C15458\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:32,747] [Preprocessor.java:241] [main] Processing chromosome C15460\r\n", "Processing chromosome C15460\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:32,843] [Preprocessor.java:241] [main] Processing chromosome C15462\r\n", "Processing chromosome C15462\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:32,858] [Preprocessor.java:241] [main] Processing chromosome C15466\r\n", "Processing chromosome C15466\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:32,968] [Preprocessor.java:241] [main] Processing chromosome C15498\r\n", "Processing chromosome C15498\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:33,048] [Preprocessor.java:241] [main] Processing chromosome C15520\r\n", "Processing chromosome C15520\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:33,080] [Preprocessor.java:241] [main] Processing chromosome C15522\r\n", "Processing chromosome C15522\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:33,136] [Preprocessor.java:241] [main] Processing chromosome C15538\r\n", "Processing chromosome C15538\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:33,189] [Preprocessor.java:241] [main] Processing chromosome C15544\r\n", "Processing chromosome C15544\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:33,244] [Preprocessor.java:241] [main] Processing chromosome C15552\r\n", "Processing chromosome C15552\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:33,303] [Preprocessor.java:241] [main] Processing chromosome C15560\r\n", "Processing chromosome C15560\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:33,371] [Preprocessor.java:241] [main] Processing chromosome C15568\r\n", "Processing chromosome C15568\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:33,470] [Preprocessor.java:241] [main] Processing chromosome C15592\r\n", "Processing chromosome C15592\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:33,534] [Preprocessor.java:241] [main] Processing chromosome C15646\r\n", "Processing chromosome C15646\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:33,601] [Preprocessor.java:241] [main] Processing chromosome C15662\r\n", "Processing chromosome C15662\r\n", "INFO [2014-03-08 06:23:33,614] [Preprocessor.java:241] [main] Processing chromosome C15678\r\n", "Processing chromosome C15678\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:33,678] [Preprocessor.java:241] [main] Processing chromosome C15696\r\n", "Processing chromosome C15696\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:33,706] [Preprocessor.java:241] [main] Processing chromosome C15720\r\n", "Processing chromosome C15720\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:33,783] [Preprocessor.java:241] [main] Processing chromosome C15740\r\n", "Processing chromosome C15740\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:33,798] [Preprocessor.java:241] [main] Processing chromosome C15750\r\n", "Processing chromosome C15750\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:33,883] [Preprocessor.java:241] [main] Processing chromosome C15766\r\n", "Processing chromosome C15766\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:33,988] [Preprocessor.java:241] [main] Processing chromosome C15768\r\n", "Processing chromosome C15768\r\n", "INFO [2014-03-08 06:23:34,007] [Preprocessor.java:241] [main] Processing chromosome C15788\r\n", "Processing chromosome C15788\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:34,040] [Preprocessor.java:241] [main] Processing chromosome C15798\r\n", "Processing chromosome C15798\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:34,142] [Preprocessor.java:241] [main] Processing chromosome C15816\r\n", "Processing chromosome C15816\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:34,243] [Preprocessor.java:241] [main] Processing chromosome C15818\r\n", "Processing chromosome C15818\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:34,281] [Preprocessor.java:241] [main] Processing chromosome C15838\r\n", "Processing chromosome C15838\r\n", "INFO [2014-03-08 06:23:34,319] [Preprocessor.java:241] [main] Processing chromosome C15846\r\n", "Processing chromosome C15846\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:34,358] [Preprocessor.java:241] [main] Processing chromosome C15848\r\n", "Processing chromosome C15848\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:34,445] [Preprocessor.java:241] [main] Processing chromosome C15860\r\n", "Processing chromosome C15860\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:34,525] [Preprocessor.java:241] [main] Processing chromosome C1587\r\n", "Processing chromosome C1587\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:34,574] [Preprocessor.java:241] [main] Processing chromosome C15892\r\n", "Processing chromosome C15892\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:34,663] [Preprocessor.java:241] [main] Processing chromosome C15894\r\n", "Processing chromosome C15894\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:34,776] [Preprocessor.java:241] [main] Processing chromosome C15902\r\n", "Processing chromosome C15902\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:34,818] [Preprocessor.java:241] [main] Processing chromosome C15904\r\n", "Processing chromosome C15904\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:34,893] [Preprocessor.java:241] [main] Processing chromosome C15922\r\n", "Processing chromosome C15922\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:34,919] [Preprocessor.java:241] [main] Processing chromosome C15932\r\n", "Processing chromosome C15932\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:35,043] [Preprocessor.java:241] [main] Processing chromosome C15934\r\n", "Processing chromosome C15934\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:35,124] [Preprocessor.java:241] [main] Processing chromosome C15952\r\n", "Processing chromosome C15952\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:35,229] [Preprocessor.java:241] [main] Processing chromosome C15982\r\n", "Processing chromosome C15982\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:35,291] [Preprocessor.java:241] [main] Processing chromosome C15992\r\n", "Processing chromosome C15992\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:35,401] [Preprocessor.java:241] [main] Processing chromosome C15994\r\n", "Processing chromosome C15994\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:35,476] [Preprocessor.java:241] [main] Processing chromosome C16002\r\n", "Processing chromosome C16002\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:35,563] [Preprocessor.java:241] [main] Processing chromosome C16004\r\n", "Processing chromosome C16004\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:35,605] [Preprocessor.java:241] [main] Processing chromosome C16010\r\n", "Processing chromosome C16010\r\n", "INFO [2014-03-08 06:23:35,626] [Preprocessor.java:241] [main] Processing chromosome C16014\r\n", "Processing chromosome C16014\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:35,656] [Preprocessor.java:241] [main] Processing chromosome C16022\r\n", "Processing chromosome C16022\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:35,747] [Preprocessor.java:241] [main] Processing chromosome C16024\r\n", "Processing chromosome C16024\r\n", "INFO [2014-03-08 06:23:35,760] [Preprocessor.java:241] [main] Processing chromosome C16042\r\n", "Processing chromosome C16042\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:35,837] [Preprocessor.java:241] [main] Processing chromosome C16058\r\n", "Processing chromosome C16058\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:35,896] [Preprocessor.java:241] [main] Processing chromosome C16062\r\n", "Processing chromosome C16062\r\n", "INFO [2014-03-08 06:23:35,921] [Preprocessor.java:241] [main] Processing chromosome C16066\r\n", "Processing chromosome C16066\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:35,975] [Preprocessor.java:241] [main] Processing chromosome C16070\r\n", "Processing chromosome C16070\r\n", "INFO [2014-03-08 06:23:36,010] [Preprocessor.java:241] [main] Processing chromosome C16084\r\n", "Processing chromosome C16084\r\n", "INFO [2014-03-08 06:23:36,025] [Preprocessor.java:241] [main] Processing chromosome C16088\r\n", "Processing chromosome C16088\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:36,064] [Preprocessor.java:241] [main] Processing chromosome C16094\r\n", "Processing chromosome C16094\r\n", "INFO [2014-03-08 06:23:36,077] [Preprocessor.java:241] [main] Processing chromosome C16102\r\n", "Processing chromosome C16102\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:36,148] [Preprocessor.java:241] [main] Processing chromosome C16106\r\n", "Processing chromosome C16106\r\n", "INFO [2014-03-08 06:23:36,162] [Preprocessor.java:241] [main] Processing chromosome C16108\r\n", "Processing chromosome C16108\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:36,182] [Preprocessor.java:241] [main] Processing chromosome C16110\r\n", "Processing chromosome C16110\r\n", "INFO [2014-03-08 06:23:36,231] [Preprocessor.java:241] [main] Processing chromosome C16144\r\n", "Processing chromosome C16144\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:36,288] [Preprocessor.java:241] [main] Processing chromosome C1619\r\n", "Processing chromosome C1619\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:36,369] [Preprocessor.java:241] [main] Processing chromosome C16192\r\n", "Processing chromosome C16192\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:36,441] [Preprocessor.java:241] [main] Processing chromosome C16204\r\n", "Processing chromosome C16204\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:36,505] [Preprocessor.java:241] [main] Processing chromosome C16208\r\n", "Processing chromosome C16208\r\n", "INFO [2014-03-08 06:23:36,523] [Preprocessor.java:241] [main] Processing chromosome C16218\r\n", "Processing chromosome C16218\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:36,562] [Preprocessor.java:241] [main] Processing chromosome C1623\r\n", "Processing chromosome C1623\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:36,605] [Preprocessor.java:241] [main] Processing chromosome C16244\r\n", "Processing chromosome C16244\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:36,662] [Preprocessor.java:241] [main] Processing chromosome C16250\r\n", "Processing chromosome C16250\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:36,739] [Preprocessor.java:241] [main] Processing chromosome C16262\r\n", "Processing chromosome C16262\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:36,795] [Preprocessor.java:241] [main] Processing chromosome C16280\r\n", "Processing chromosome C16280\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:36,837] [Preprocessor.java:241] [main] Processing chromosome C16296\r\n", "Processing chromosome C16296\r\n", "INFO [2014-03-08 06:23:36,861] [Preprocessor.java:241] [main] Processing chromosome C16312\r\n", "Processing chromosome C16312\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:36,895] [Preprocessor.java:241] [main] Processing chromosome C16318\r\n", "Processing chromosome C16318\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:36,930] [Preprocessor.java:241] [main] Processing chromosome C16338\r\n", "Processing chromosome C16338\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:37,030] [Preprocessor.java:241] [main] Processing chromosome C16390\r\n", "Processing chromosome C16390\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:37,141] [Preprocessor.java:241] [main] Processing chromosome C16392\r\n", "Processing chromosome C16392\r\n", "INFO [2014-03-08 06:23:37,190] [Preprocessor.java:241] [main] Processing chromosome C16400\r\n", "Processing chromosome C16400\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:37,247] [Preprocessor.java:241] [main] Processing chromosome C16404\r\n", "Processing chromosome C16404\r\n", "INFO [2014-03-08 06:23:37,271] [Preprocessor.java:241] [main] Processing chromosome C16420\r\n", "Processing chromosome C16420\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:37,332] [Preprocessor.java:241] [main] Processing chromosome C16434\r\n", "Processing chromosome C16434\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:37,373] [Preprocessor.java:241] [main] Processing chromosome C16446\r\n", "Processing chromosome C16446\r\n", "INFO [2014-03-08 06:23:37,401] [Preprocessor.java:241] [main] Processing chromosome C16458\r\n", "Processing chromosome C16458\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:37,474] [Preprocessor.java:241] [main] Processing chromosome C16486\r\n", "Processing chromosome C16486\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:37,527] [Preprocessor.java:241] [main] Processing chromosome C16492\r\n", "Processing chromosome C16492\r\n", "INFO [2014-03-08 06:23:37,540] [Preprocessor.java:241] [main] Processing chromosome C16512\r\n", "Processing chromosome C16512\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:37,611] [Preprocessor.java:241] [main] Processing chromosome C16516\r\n", "Processing chromosome C16516\r\n", "INFO [2014-03-08 06:23:37,644] [Preprocessor.java:241] [main] Processing chromosome C16520\r\n", "Processing chromosome C16520\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:37,691] [Preprocessor.java:241] [main] Processing chromosome C16540\r\n", "Processing chromosome C16540\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:37,737] [Preprocessor.java:241] [main] Processing chromosome C16542\r\n", "Processing chromosome C16542\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:37,773] [Preprocessor.java:241] [main] Processing chromosome C16554\r\n", "Processing chromosome C16554\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:37,840] [Preprocessor.java:241] [main] Processing chromosome C16556\r\n", "Processing chromosome C16556\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:37,885] [Preprocessor.java:241] [main] Processing chromosome C16558\r\n", "Processing chromosome C16558\r\n", "INFO [2014-03-08 06:23:37,912] [Preprocessor.java:241] [main] Processing chromosome C16564\r\n", "Processing chromosome C16564\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:37,954] [Preprocessor.java:241] [main] Processing chromosome C16566\r\n", "Processing chromosome C16566\r\n", "INFO [2014-03-08 06:23:37,975] [Preprocessor.java:241] [main] Processing chromosome C16582\r\n", "Processing chromosome C16582\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:38,030] [Preprocessor.java:241] [main] Processing chromosome C16604\r\n", "Processing chromosome C16604\r\n", "INFO [2014-03-08 06:23:38,052] [Preprocessor.java:241] [main] Processing chromosome C16606\r\n", "Processing chromosome C16606\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:38,114] [Preprocessor.java:241] [main] Processing chromosome C16608\r\n", "Processing chromosome C16608\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:38,139] [Preprocessor.java:241] [main] Processing chromosome C1661\r\n", "Processing chromosome C1661\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:38,206] [Preprocessor.java:241] [main] Processing chromosome C16612\r\n", "Processing chromosome C16612\r\n", "INFO [2014-03-08 06:23:38,230] [Preprocessor.java:241] [main] Processing chromosome C16622\r\n", "Processing chromosome C16622\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:38,269] [Preprocessor.java:241] [main] Processing chromosome C16636\r\n", "Processing chromosome C16636\r\n", "INFO [2014-03-08 06:23:38,289] [Preprocessor.java:241] [main] Processing chromosome C16650\r\n", "Processing chromosome C16650\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:38,300] [Preprocessor.java:241] [main] Processing chromosome C16666\r\n", "Processing chromosome C16666\r\n", "INFO [2014-03-08 06:23:38,324] [Preprocessor.java:241] [main] Processing chromosome C16700\r\n", "Processing chromosome C16700\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:38,381] [Preprocessor.java:241] [main] Processing chromosome C16710\r\n", "Processing chromosome C16710\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:38,437] [Preprocessor.java:241] [main] Processing chromosome C16760\r\n", "Processing chromosome C16760\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:38,511] [Preprocessor.java:241] [main] Processing chromosome C16766\r\n", "Processing chromosome C16766\r\n", "INFO [2014-03-08 06:23:38,546] [Preprocessor.java:241] [main] Processing chromosome C16786\r\n", "Processing chromosome C16786\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:38,661] [Preprocessor.java:241] [main] Processing chromosome C16796\r\n", "Processing chromosome C16796\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:38,672] [Preprocessor.java:241] [main] Processing chromosome C16798\r\n", "Processing chromosome C16798\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:38,745] [Preprocessor.java:241] [main] Processing chromosome C16820\r\n", "Processing chromosome C16820\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:38,785] [Preprocessor.java:241] [main] Processing chromosome C16854\r\n", "Processing chromosome C16854\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:38,838] [Preprocessor.java:241] [main] Processing chromosome C16864\r\n", "Processing chromosome C16864\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:38,876] [Preprocessor.java:241] [main] Processing chromosome C16870\r\n", "Processing chromosome C16870\r\n", "INFO [2014-03-08 06:23:38,921] [Preprocessor.java:241] [main] Processing chromosome C16936\r\n", "Processing chromosome C16936\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:39,000] [Preprocessor.java:241] [main] Processing chromosome C16948\r\n", "Processing chromosome C16948\r\n", "INFO [2014-03-08 06:23:39,026] [Preprocessor.java:241] [main] Processing chromosome C16958\r\n", "Processing chromosome C16958\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:39,054] [Preprocessor.java:241] [main] Processing chromosome C16982\r\n", "Processing chromosome C16982\r\n", "INFO [2014-03-08 06:23:39,065] [Preprocessor.java:241] [main] Processing chromosome C17000\r\n", "Processing chromosome C17000\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:39,091] [Preprocessor.java:241] [main] Processing chromosome C17016\r\n", "Processing chromosome C17016\r\n", "INFO [2014-03-08 06:23:39,128] [Preprocessor.java:241] [main] Processing chromosome C17028\r\n", "Processing chromosome C17028\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:39,182] [Preprocessor.java:241] [main] Processing chromosome C17036\r\n", "Processing chromosome C17036\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:39,209] [Preprocessor.java:241] [main] Processing chromosome C17038\r\n", "Processing chromosome C17038\r\n", "INFO [2014-03-08 06:23:39,229] [Preprocessor.java:241] [main] Processing chromosome C17044\r\n", "Processing chromosome C17044\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:39,250] [Preprocessor.java:241] [main] Processing chromosome C17052\r\n", "Processing chromosome C17052\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:39,321] [Preprocessor.java:241] [main] Processing chromosome C17056\r\n", "Processing chromosome C17056\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:39,373] [Preprocessor.java:241] [main] Processing chromosome C17064\r\n", "Processing chromosome C17064\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:39,416] [Preprocessor.java:241] [main] Processing chromosome C17076\r\n", "Processing chromosome C17076\r\n", "INFO [2014-03-08 06:23:39,442] [Preprocessor.java:241] [main] Processing chromosome C17082\r\n", "Processing chromosome C17082\r\n", "INFO [2014-03-08 06:23:39,451] [Preprocessor.java:241] [main] Processing chromosome C17098\r\n", "Processing chromosome C17098\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:39,500] [Preprocessor.java:241] [main] Processing chromosome C17100\r\n", "Processing chromosome C17100\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:39,545] [Preprocessor.java:241] [main] Processing chromosome C17102\r\n", "Processing chromosome C17102\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:39,603] [Preprocessor.java:241] [main] Processing chromosome C17108\r\n", "Processing chromosome C17108\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:39,655] [Preprocessor.java:241] [main] Processing chromosome C17130\r\n", "Processing chromosome C17130\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:39,679] [Preprocessor.java:241] [main] Processing chromosome C17134\r\n", "Processing chromosome C17134\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:39,737] [Preprocessor.java:241] [main] Processing chromosome C17150\r\n", "Processing chromosome C17150\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:39,766] [Preprocessor.java:241] [main] Processing chromosome C17158\r\n", "Processing chromosome C17158\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:39,841] [Preprocessor.java:241] [main] Processing chromosome C17170\r\n", "Processing chromosome C17170\r\n", "INFO [2014-03-08 06:23:39,867] [Preprocessor.java:241] [main] Processing chromosome C17178\r\n", "Processing chromosome C17178\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:39,899] [Preprocessor.java:241] [main] Processing chromosome C17186\r\n", "Processing chromosome C17186\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:39,937] [Preprocessor.java:241] [main] Processing chromosome C17212\r\n", "Processing chromosome C17212\r\n", "INFO [2014-03-08 06:23:39,972] [Preprocessor.java:241] [main] Processing chromosome C17244\r\n", "Processing chromosome C17244\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:39,998] [Preprocessor.java:241] [main] Processing chromosome C17262\r\n", "Processing chromosome C17262\r\n", "INFO [2014-03-08 06:23:40,034] [Preprocessor.java:241] [main] Processing chromosome C17274\r\n", "Processing chromosome C17274\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:40,094] [Preprocessor.java:241] [main] Processing chromosome C17316\r\n", "Processing chromosome C17316\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:40,199] [Preprocessor.java:241] [main] Processing chromosome C17332\r\n", "Processing chromosome C17332\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:40,214] [Preprocessor.java:241] [main] Processing chromosome C17348\r\n", "Processing chromosome C17348\r\n", "INFO [2014-03-08 06:23:40,236] [Preprocessor.java:241] [main] Processing chromosome C17358\r\n", "Processing chromosome C17358\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:40,343] [Preprocessor.java:241] [main] Processing chromosome C17362\r\n", "Processing chromosome C17362\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:40,385] [Preprocessor.java:241] [main] Processing chromosome C17376\r\n", "Processing chromosome C17376\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:40,445] [Preprocessor.java:241] [main] Processing chromosome C17394\r\n", "Processing chromosome C17394\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:40,470] [Preprocessor.java:241] [main] Processing chromosome C17398\r\n", "Processing chromosome C17398\r\n", "INFO [2014-03-08 06:23:40,480] [Preprocessor.java:241] [main] Processing chromosome C17402\r\n", "Processing chromosome C17402\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:40,560] [Preprocessor.java:241] [main] Processing chromosome C17426\r\n", "Processing chromosome C17426\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:40,586] [Preprocessor.java:241] [main] Processing chromosome C17438\r\n", "Processing chromosome C17438\r\n", "INFO [2014-03-08 06:23:40,608] [Preprocessor.java:241] [main] Processing chromosome C17470\r\n", "Processing chromosome C17470\r\n", "INFO [2014-03-08 06:23:40,628] [Preprocessor.java:241] [main] Processing chromosome C17472\r\n", "Processing chromosome C17472\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:40,710] [Preprocessor.java:241] [main] Processing chromosome C17476\r\n", "Processing chromosome C17476\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:40,765] [Preprocessor.java:241] [main] Processing chromosome C17486\r\n", "Processing chromosome C17486\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:40,805] [Preprocessor.java:241] [main] Processing chromosome C17494\r\n", "Processing chromosome C17494\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:40,922] [Preprocessor.java:241] [main] Processing chromosome C17514\r\n", "Processing chromosome C17514\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:41,001] [Preprocessor.java:241] [main] Processing chromosome C17516\r\n", "Processing chromosome C17516\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:41,028] [Preprocessor.java:241] [main] Processing chromosome C17526\r\n", "Processing chromosome C17526\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:41,110] [Preprocessor.java:241] [main] Processing chromosome C17540\r\n", "Processing chromosome C17540\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:41,167] [Preprocessor.java:241] [main] Processing chromosome C17556\r\n", "Processing chromosome C17556\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:41,231] [Preprocessor.java:241] [main] Processing chromosome C17574\r\n", "Processing chromosome C17574\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:41,315] [Preprocessor.java:241] [main] Processing chromosome C17580\r\n", "Processing chromosome C17580\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:41,383] [Preprocessor.java:241] [main] Processing chromosome C17588\r\n", "Processing chromosome C17588\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:41,406] [Preprocessor.java:241] [main] Processing chromosome C17602\r\n", "Processing chromosome C17602\r\n", "INFO [2014-03-08 06:23:41,433] [Preprocessor.java:241] [main] Processing chromosome C17604\r\n", "Processing chromosome C17604\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:41,484] [Preprocessor.java:241] [main] Processing chromosome C17608\r\n", "Processing chromosome C17608\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:41,515] [Preprocessor.java:241] [main] Processing chromosome C17630\r\n", "Processing chromosome C17630\r\n", "INFO [2014-03-08 06:23:41,550] [Preprocessor.java:241] [main] Processing chromosome C17636\r\n", "Processing chromosome C17636\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:41,610] [Preprocessor.java:241] [main] Processing chromosome C17660\r\n", "Processing chromosome C17660\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:41,673] [Preprocessor.java:241] [main] Processing chromosome C17662\r\n", "Processing chromosome C17662\r\n", "INFO [2014-03-08 06:23:41,706] [Preprocessor.java:241] [main] Processing chromosome C17664\r\n", "Processing chromosome C17664\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:41,718] [Preprocessor.java:241] [main] Processing chromosome C17678\r\n", "Processing chromosome C17678\r\n", "INFO [2014-03-08 06:23:41,741] [Preprocessor.java:241] [main] Processing chromosome C17682\r\n", "Processing chromosome C17682\r\n", "INFO [2014-03-08 06:23:41,752] [Preprocessor.java:241] [main] Processing chromosome C17684\r\n", "Processing chromosome C17684\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:41,793] [Preprocessor.java:241] [main] Processing chromosome C17700\r\n", "Processing chromosome C17700\r\n", "INFO [2014-03-08 06:23:41,804] [Preprocessor.java:241] [main] Processing chromosome C17710\r\n", "Processing chromosome C17710\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:41,829] [Preprocessor.java:241] [main] Processing chromosome C17730\r\n", "Processing chromosome C17730\r\n", "INFO [2014-03-08 06:23:41,851] [Preprocessor.java:241] [main] Processing chromosome C17734\r\n", "Processing chromosome C17734\r\n", "INFO [2014-03-08 06:23:41,861] [Preprocessor.java:241] [main] Processing chromosome C17738\r\n", "Processing chromosome C17738\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:41,935] [Preprocessor.java:241] [main] Processing chromosome C17746\r\n", "Processing chromosome C17746\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:42,005] [Preprocessor.java:241] [main] Processing chromosome C17748\r\n", "Processing chromosome C17748\r\n", "INFO [2014-03-08 06:23:42,023] [Preprocessor.java:241] [main] Processing chromosome C17762\r\n", "Processing chromosome C17762\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:42,075] [Preprocessor.java:241] [main] Processing chromosome C17770\r\n", "Processing chromosome C17770\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:42,102] [Preprocessor.java:241] [main] Processing chromosome C17772\r\n", "Processing chromosome C17772\r\n", "INFO [2014-03-08 06:23:42,111] [Preprocessor.java:241] [main] Processing chromosome C17786\r\n", "Processing chromosome C17786\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:42,146] [Preprocessor.java:241] [main] Processing chromosome C17794\r\n", "Processing chromosome C17794\r\n", "INFO [2014-03-08 06:23:42,178] [Preprocessor.java:241] [main] Processing chromosome C1781\r\n", "Processing chromosome C1781\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:42,239] [Preprocessor.java:241] [main] Processing chromosome C17814\r\n", "Processing chromosome C17814\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:42,286] [Preprocessor.java:241] [main] Processing chromosome C17840\r\n", "Processing chromosome C17840\r\n", "INFO [2014-03-08 06:23:42,318] [Preprocessor.java:241] [main] Processing chromosome C17852\r\n", "Processing chromosome C17852\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:42,338] [Preprocessor.java:241] [main] Processing chromosome C17854\r\n", "Processing chromosome C17854\r\n", "INFO [2014-03-08 06:23:42,346] [Preprocessor.java:241] [main] Processing chromosome C17888\r\n", "Processing chromosome C17888\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:42,404] [Preprocessor.java:241] [main] Processing chromosome C1789\r\n", "Processing chromosome C1789\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:42,466] [Preprocessor.java:241] [main] Processing chromosome C17896\r\n", "Processing chromosome C17896\r\n", "INFO [2014-03-08 06:23:42,487] [Preprocessor.java:241] [main] Processing chromosome C17906\r\n", "Processing chromosome C17906\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:42,512] [Preprocessor.java:241] [main] Processing chromosome C17940\r\n", "Processing chromosome C17940\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:42,573] [Preprocessor.java:241] [main] Processing chromosome C17944\r\n", "Processing chromosome C17944\r\n", "INFO [2014-03-08 06:23:42,591] [Preprocessor.java:241] [main] Processing chromosome C17946\r\n", "Processing chromosome C17946\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:42,610] [Preprocessor.java:241] [main] Processing chromosome C1795\r\n", "Processing chromosome C1795\r\n", "INFO [2014-03-08 06:23:42,650] [Preprocessor.java:241] [main] Processing chromosome C17950\r\n", "Processing chromosome C17950\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:42,702] [Preprocessor.java:241] [main] Processing chromosome C17960\r\n", "Processing chromosome C17960\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:42,764] [Preprocessor.java:241] [main] Processing chromosome C17998\r\n", "Processing chromosome C17998\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:42,825] [Preprocessor.java:241] [main] Processing chromosome C18004\r\n", "Processing chromosome C18004\r\n", "INFO [2014-03-08 06:23:42,862] [Preprocessor.java:241] [main] Processing chromosome C18008\r\n", "Processing chromosome C18008\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:42,918] [Preprocessor.java:241] [main] Processing chromosome C18010\r\n", "Processing chromosome C18010\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:42,932] [Preprocessor.java:241] [main] Processing chromosome C18046\r\n", "Processing chromosome C18046\r\n", "INFO [2014-03-08 06:23:42,963] [Preprocessor.java:241] [main] Processing chromosome C18050\r\n", "Processing chromosome C18050\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:43,022] [Preprocessor.java:241] [main] Processing chromosome C18054\r\n", "Processing chromosome C18054\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:43,095] [Preprocessor.java:241] [main] Processing chromosome C181\r\n", "Processing chromosome C181\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:43,138] [Preprocessor.java:241] [main] Processing chromosome C18104\r\n", "Processing chromosome C18104\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:43,212] [Preprocessor.java:241] [main] Processing chromosome C18108\r\n", "Processing chromosome C18108\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:43,266] [Preprocessor.java:241] [main] Processing chromosome C18122\r\n", "Processing chromosome C18122\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:43,328] [Preprocessor.java:241] [main] Processing chromosome C18128\r\n", "Processing chromosome C18128\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:43,388] [Preprocessor.java:241] [main] Processing chromosome C18136\r\n", "Processing chromosome C18136\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:43,456] [Preprocessor.java:241] [main] Processing chromosome C18168\r\n", "Processing chromosome C18168\r\n", "INFO [2014-03-08 06:23:43,470] [Preprocessor.java:241] [main] Processing chromosome C18184\r\n", "Processing chromosome C18184\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:43,524] [Preprocessor.java:241] [main] Processing chromosome C18204\r\n", "Processing chromosome C18204\r\n", "INFO [2014-03-08 06:23:43,535] [Preprocessor.java:241] [main] Processing chromosome C18226\r\n", "Processing chromosome C18226\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:43,592] [Preprocessor.java:241] [main] Processing chromosome C18238\r\n", "Processing chromosome C18238\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:43,653] [Preprocessor.java:241] [main] Processing chromosome C18244\r\n", "Processing chromosome C18244\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:43,708] [Preprocessor.java:241] [main] Processing chromosome C18254\r\n", "Processing chromosome C18254\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:43,752] [Preprocessor.java:241] [main] Processing chromosome C18256\r\n", "Processing chromosome C18256\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:43,777] [Preprocessor.java:241] [main] Processing chromosome C18278\r\n", "Processing chromosome C18278\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:43,847] [Preprocessor.java:241] [main] Processing chromosome C18288\r\n", "Processing chromosome C18288\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:43,930] [Preprocessor.java:241] [main] Processing chromosome C1829\r\n", "Processing chromosome C1829\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:43,953] [Preprocessor.java:241] [main] Processing chromosome C18316\r\n", "Processing chromosome C18316\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:43,995] [Preprocessor.java:241] [main] Processing chromosome C1833\r\n", "Processing chromosome C1833\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:44,073] [Preprocessor.java:241] [main] Processing chromosome C18334\r\n", "Processing chromosome C18334\r\n", "INFO [2014-03-08 06:23:44,083] [Preprocessor.java:241] [main] Processing chromosome C18346\r\n", "Processing chromosome C18346\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:44,150] [Preprocessor.java:241] [main] Processing chromosome C18366\r\n", "Processing chromosome C18366\r\n", "INFO [2014-03-08 06:23:44,182] [Preprocessor.java:241] [main] Processing chromosome C18378\r\n", "Processing chromosome C18378\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:44,196] [Preprocessor.java:241] [main] Processing chromosome C18394\r\n", "Processing chromosome C18394\r\n", "INFO [2014-03-08 06:23:44,219] [Preprocessor.java:241] [main] Processing chromosome C18398\r\n", "Processing chromosome C18398\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:44,263] [Preprocessor.java:241] [main] Processing chromosome C18414\r\n", "Processing chromosome C18414\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:44,313] [Preprocessor.java:241] [main] Processing chromosome C18418\r\n", "Processing chromosome C18418\r\n", "INFO [2014-03-08 06:23:44,342] [Preprocessor.java:241] [main] Processing chromosome C18428\r\n", "Processing chromosome C18428\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:44,375] [Preprocessor.java:241] [main] Processing chromosome C1843\r\n", "Processing chromosome C1843\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:44,436] [Preprocessor.java:241] [main] Processing chromosome C18430\r\n", "Processing chromosome C18430\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:44,467] [Preprocessor.java:241] [main] Processing chromosome C18434\r\n", "Processing chromosome C18434\r\n", "INFO [2014-03-08 06:23:44,499] [Preprocessor.java:241] [main] Processing chromosome C18446\r\n", "Processing chromosome C18446\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:44,532] [Preprocessor.java:241] [main] Processing chromosome C18448\r\n", "Processing chromosome C18448\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:44,577] [Preprocessor.java:241] [main] Processing chromosome C18450\r\n", "Processing chromosome C18450\r\n", "INFO [2014-03-08 06:23:44,619] [Preprocessor.java:241] [main] Processing chromosome C18492\r\n", "Processing chromosome C18492\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:44,680] [Preprocessor.java:241] [main] Processing chromosome C18508\r\n", "Processing chromosome C18508\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:44,752] [Preprocessor.java:241] [main] Processing chromosome C18522\r\n", "Processing chromosome C18522\r\n", "INFO [2014-03-08 06:23:44,773] [Preprocessor.java:241] [main] Processing chromosome C18538\r\n", "Processing chromosome C18538\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:44,851] [Preprocessor.java:241] [main] Processing chromosome C18546\r\n", "Processing chromosome C18546\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:44,920] [Preprocessor.java:241] [main] Processing chromosome C18548\r\n", "Processing chromosome C18548\r\n", "INFO [2014-03-08 06:23:44,935] [Preprocessor.java:241] [main] Processing chromosome C18572\r\n", "Processing chromosome C18572\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:44,976] [Preprocessor.java:241] [main] Processing chromosome C18578\r\n", "Processing chromosome C18578\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:45,034] [Preprocessor.java:241] [main] Processing chromosome C18580\r\n", "Processing chromosome C18580\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:45,103] [Preprocessor.java:241] [main] Processing chromosome C18600\r\n", "Processing chromosome C18600\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:45,175] [Preprocessor.java:241] [main] Processing chromosome C1861\r\n", "Processing chromosome C1861\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:45,262] [Preprocessor.java:241] [main] Processing chromosome C18638\r\n", "Processing chromosome C18638\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:45,332] [Preprocessor.java:241] [main] Processing chromosome C18652\r\n", "Processing chromosome C18652\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:45,426] [Preprocessor.java:241] [main] Processing chromosome C18664\r\n", "Processing chromosome C18664\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:45,436] [Preprocessor.java:241] [main] Processing chromosome C18674\r\n", "Processing chromosome C18674\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:45,532] [Preprocessor.java:241] [main] Processing chromosome C18682\r\n", "Processing chromosome C18682\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:45,548] [Preprocessor.java:241] [main] Processing chromosome C18688\r\n", "Processing chromosome C18688\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:45,609] [Preprocessor.java:241] [main] Processing chromosome C18692\r\n", "Processing chromosome C18692\r\n", "INFO [2014-03-08 06:23:45,621] [Preprocessor.java:241] [main] Processing chromosome C18708\r\n", "Processing chromosome C18708\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:45,690] [Preprocessor.java:241] [main] Processing chromosome C18722\r\n", "Processing chromosome C18722\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:45,722] [Preprocessor.java:241] [main] Processing chromosome C18726\r\n", "Processing chromosome C18726\r\n", "INFO [2014-03-08 06:23:45,743] [Preprocessor.java:241] [main] Processing chromosome C18728\r\n", "Processing chromosome C18728\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:45,764] [Preprocessor.java:241] [main] Processing chromosome C18736\r\n", "Processing chromosome C18736\r\n", "INFO [2014-03-08 06:23:45,774] [Preprocessor.java:241] [main] Processing chromosome C18744\r\n", "Processing chromosome C18744\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:45,816] [Preprocessor.java:241] [main] Processing chromosome C18752\r\n", "Processing chromosome C18752\r\n", "INFO [2014-03-08 06:23:45,844] [Preprocessor.java:241] [main] Processing chromosome C18758\r\n", "Processing chromosome C18758\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:45,901] [Preprocessor.java:241] [main] Processing chromosome C18772\r\n", "Processing chromosome C18772\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:45,920] [Preprocessor.java:241] [main] Processing chromosome C18774\r\n", "Processing chromosome C18774\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:45,992] [Preprocessor.java:241] [main] Processing chromosome C18792\r\n", "Processing chromosome C18792\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:46,069] [Preprocessor.java:241] [main] Processing chromosome C18802\r\n", "Processing chromosome C18802\r\n", "INFO [2014-03-08 06:23:46,077] [Preprocessor.java:241] [main] Processing chromosome C18810\r\n", "Processing chromosome C18810\r\n", "INFO [2014-03-08 06:23:46,096] [Preprocessor.java:241] [main] Processing chromosome C18824\r\n", "Processing chromosome C18824\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:46,115] [Preprocessor.java:241] [main] Processing chromosome C18832\r\n", "Processing chromosome C18832\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:46,186] [Preprocessor.java:241] [main] Processing chromosome C18836\r\n", "Processing chromosome C18836\r\n", "INFO [2014-03-08 06:23:46,204] [Preprocessor.java:241] [main] Processing chromosome C18850\r\n", "Processing chromosome C18850\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:46,237] [Preprocessor.java:241] [main] Processing chromosome C18858\r\n", "Processing chromosome C18858\r\n", "INFO [2014-03-08 06:23:46,261] [Preprocessor.java:241] [main] Processing chromosome C18860\r\n", "Processing chromosome C18860\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:46,320] [Preprocessor.java:241] [main] Processing chromosome C18862\r\n", "Processing chromosome C18862\r\n", "INFO [2014-03-08 06:23:46,356] [Preprocessor.java:241] [main] Processing chromosome C1887\r\n", "Processing chromosome C1887\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:46,435] [Preprocessor.java:241] [main] Processing chromosome C18884\r\n", "Processing chromosome C18884\r\n", "INFO [2014-03-08 06:23:46,443] [Preprocessor.java:241] [main] Processing chromosome C18924\r\n", "Processing chromosome C18924\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:46,484] [Preprocessor.java:241] [main] Processing chromosome C18938\r\n", "Processing chromosome C18938\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:46,557] [Preprocessor.java:241] [main] Processing chromosome C18950\r\n", "Processing chromosome C18950\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:46,587] [Preprocessor.java:241] [main] Processing chromosome C18952\r\n", "Processing chromosome C18952\r\n", "INFO [2014-03-08 06:23:46,599] [Preprocessor.java:241] [main] Processing chromosome C18966\r\n", "Processing chromosome C18966\r\n", "INFO [2014-03-08 06:23:46,617] [Preprocessor.java:241] [main] Processing chromosome C18968\r\n", "Processing chromosome C18968\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:46,686] [Preprocessor.java:241] [main] Processing chromosome C18974\r\n", "Processing chromosome C18974\r\n", "INFO [2014-03-08 06:23:46,726] [Preprocessor.java:241] [main] Processing chromosome C18976\r\n", "Processing chromosome C18976\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:46,812] [Preprocessor.java:241] [main] Processing chromosome C18996\r\n", "Processing chromosome C18996\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:46,847] [Preprocessor.java:241] [main] Processing chromosome C19008\r\n", "Processing chromosome C19008\r\n", "INFO [2014-03-08 06:23:46,872] [Preprocessor.java:241] [main] Processing chromosome C19018\r\n", "Processing chromosome C19018\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:46,942] [Preprocessor.java:241] [main] Processing chromosome C19028\r\n", "Processing chromosome C19028\r\n", "INFO [2014-03-08 06:23:46,976] [Preprocessor.java:241] [main] Processing chromosome C19042\r\n", "Processing chromosome C19042\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:47,058] [Preprocessor.java:241] [main] Processing chromosome C19058\r\n", "Processing chromosome C19058\r\n", "INFO [2014-03-08 06:23:47,076] [Preprocessor.java:241] [main] Processing chromosome C19072\r\n", "Processing chromosome C19072\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:47,107] [Preprocessor.java:241] [main] Processing chromosome C19082\r\n", "Processing chromosome C19082\r\n", "INFO [2014-03-08 06:23:47,138] [Preprocessor.java:241] [main] Processing chromosome C19094\r\n", "Processing chromosome C19094\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:47,151] [Preprocessor.java:241] [main] Processing chromosome C19100\r\n", "Processing chromosome C19100\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:47,214] [Preprocessor.java:241] [main] Processing chromosome C19108\r\n", "Processing chromosome C19108\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:47,276] [Preprocessor.java:241] [main] Processing chromosome C19112\r\n", "Processing chromosome C19112\r\n", "INFO [2014-03-08 06:23:47,291] [Preprocessor.java:241] [main] Processing chromosome C19122\r\n", "Processing chromosome C19122\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:47,305] [Preprocessor.java:241] [main] Processing chromosome C19142\r\n", "Processing chromosome C19142\r\n", "INFO [2014-03-08 06:23:47,347] [Preprocessor.java:241] [main] Processing chromosome C19148\r\n", "Processing chromosome C19148\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:47,406] [Preprocessor.java:241] [main] Processing chromosome C19160\r\n", "Processing chromosome C19160\r\n", "INFO [2014-03-08 06:23:47,414] [Preprocessor.java:241] [main] Processing chromosome C19162\r\n", "Processing chromosome C19162\r\n", "INFO [2014-03-08 06:23:47,428] [Preprocessor.java:241] [main] Processing chromosome C19178\r\n", "Processing chromosome C19178\r\n", "INFO [2014-03-08 06:23:47,446] [Preprocessor.java:241] [main] Processing chromosome C19194\r\n", "Processing chromosome C19194\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:47,520] [Preprocessor.java:241] [main] Processing chromosome C19200\r\n", "Processing chromosome C19200\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:47,575] [Preprocessor.java:241] [main] Processing chromosome C19204\r\n", "Processing chromosome C19204\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:47,612] [Preprocessor.java:241] [main] Processing chromosome C19224\r\n", "Processing chromosome C19224\r\n", "INFO [2014-03-08 06:23:47,641] [Preprocessor.java:241] [main] Processing chromosome C19228\r\n", "Processing chromosome C19228\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:47,733] [Preprocessor.java:241] [main] Processing chromosome C19242\r\n", "Processing chromosome C19242\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:47,801] [Preprocessor.java:241] [main] Processing chromosome C19250\r\n", "Processing chromosome C19250\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:47,870] [Preprocessor.java:241] [main] Processing chromosome C19260\r\n", "Processing chromosome C19260\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:47,899] [Preprocessor.java:241] [main] Processing chromosome C19270\r\n", "Processing chromosome C19270\r\n", "INFO [2014-03-08 06:23:47,919] [Preprocessor.java:241] [main] Processing chromosome C19276\r\n", "Processing chromosome C19276\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:47,938] [Preprocessor.java:241] [main] Processing chromosome C19288\r\n", "Processing chromosome C19288\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:47,997] [Preprocessor.java:241] [main] Processing chromosome C19298\r\n", "Processing chromosome C19298\r\n", "INFO [2014-03-08 06:23:48,018] [Preprocessor.java:241] [main] Processing chromosome C19300\r\n", "Processing chromosome C19300\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:48,085] [Preprocessor.java:241] [main] Processing chromosome C19308\r\n", "Processing chromosome C19308\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:48,140] [Preprocessor.java:241] [main] Processing chromosome C19314\r\n", "Processing chromosome C19314\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:48,217] [Preprocessor.java:241] [main] Processing chromosome C19336\r\n", "Processing chromosome C19336\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:48,260] [Preprocessor.java:241] [main] Processing chromosome C19340\r\n", "Processing chromosome C19340\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:48,338] [Preprocessor.java:241] [main] Processing chromosome C19344\r\n", "Processing chromosome C19344\r\n", "INFO [2014-03-08 06:23:48,368] [Preprocessor.java:241] [main] Processing chromosome C19348\r\n", "Processing chromosome C19348\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:48,437] [Preprocessor.java:241] [main] Processing chromosome C19356\r\n", "Processing chromosome C19356\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:48,503] [Preprocessor.java:241] [main] Processing chromosome C19382\r\n", "Processing chromosome C19382\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:48,567] [Preprocessor.java:241] [main] Processing chromosome C19386\r\n", "Processing chromosome C19386\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:48,617] [Preprocessor.java:241] [main] Processing chromosome C19392\r\n", "Processing chromosome C19392\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:48,671] [Preprocessor.java:241] [main] Processing chromosome C19396\r\n", "Processing chromosome C19396\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:48,713] [Preprocessor.java:241] [main] Processing chromosome C19410\r\n", "Processing chromosome C19410\r\n", "INFO [2014-03-08 06:23:48,746] [Preprocessor.java:241] [main] Processing chromosome C19416\r\n", "Processing chromosome C19416\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:48,805] [Preprocessor.java:241] [main] Processing chromosome C19450\r\n", "Processing chromosome C19450\r\n", "INFO [2014-03-08 06:23:48,812] [Preprocessor.java:241] [main] Processing chromosome C19460\r\n", "Processing chromosome C19460\r\n", "INFO [2014-03-08 06:23:48,839] [Preprocessor.java:241] [main] Processing chromosome C19472\r\n", "Processing chromosome C19472\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:48,899] [Preprocessor.java:241] [main] Processing chromosome C19480\r\n", "Processing chromosome C19480\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:48,936] [Preprocessor.java:241] [main] Processing chromosome C19494\r\n", "Processing chromosome C19494\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:49,008] [Preprocessor.java:241] [main] Processing chromosome C19496\r\n", "Processing chromosome C19496\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:49,050] [Preprocessor.java:241] [main] Processing chromosome C19500\r\n", "Processing chromosome C19500\r\n", "INFO [2014-03-08 06:23:49,076] [Preprocessor.java:241] [main] Processing chromosome C19510\r\n", "Processing chromosome C19510\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:49,140] [Preprocessor.java:241] [main] Processing chromosome C19516\r\n", "Processing chromosome C19516\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:49,175] [Preprocessor.java:241] [main] Processing chromosome C19522\r\n", "Processing chromosome C19522\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:49,198] [Preprocessor.java:241] [main] Processing chromosome C19532\r\n", "Processing chromosome C19532\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:49,264] [Preprocessor.java:241] [main] Processing chromosome C19556\r\n", "Processing chromosome C19556\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:49,302] [Preprocessor.java:241] [main] Processing chromosome C19560\r\n", "Processing chromosome C19560\r\n", "INFO [2014-03-08 06:23:49,309] [Preprocessor.java:241] [main] Processing chromosome C19570\r\n", "Processing chromosome C19570\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:49,362] [Preprocessor.java:241] [main] Processing chromosome C19572\r\n", "Processing chromosome C19572\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:49,421] [Preprocessor.java:241] [main] Processing chromosome C19576\r\n", "Processing chromosome C19576\r\n", "INFO [2014-03-08 06:23:49,439] [Preprocessor.java:241] [main] Processing chromosome C19582\r\n", "Processing chromosome C19582\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:49,506] [Preprocessor.java:241] [main] Processing chromosome C19584\r\n", "Processing chromosome C19584\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:49,523] [Preprocessor.java:241] [main] Processing chromosome C19586\r\n", "Processing chromosome C19586\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:49,567] [Preprocessor.java:241] [main] Processing chromosome C19594\r\n", "Processing chromosome C19594\r\n", "INFO [2014-03-08 06:23:49,584] [Preprocessor.java:241] [main] Processing chromosome C19600\r\n", "Processing chromosome C19600\r\n", "INFO [2014-03-08 06:23:49,603] [Preprocessor.java:241] [main] Processing chromosome C19602\r\n", "Processing chromosome C19602\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:49,642] [Preprocessor.java:241] [main] Processing chromosome C19612\r\n", "Processing chromosome C19612\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:49,699] [Preprocessor.java:241] [main] Processing chromosome C19622\r\n", "Processing chromosome C19622\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:49,750] [Preprocessor.java:241] [main] Processing chromosome C19626\r\n", "Processing chromosome C19626\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:49,786] [Preprocessor.java:241] [main] Processing chromosome C19628\r\n", "Processing chromosome C19628\r\n", "INFO [2014-03-08 06:23:49,792] [Preprocessor.java:241] [main] Processing chromosome C19630\r\n", "Processing chromosome C19630\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:49,850] [Preprocessor.java:241] [main] Processing chromosome C19636\r\n", "Processing chromosome C19636\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:49,887] [Preprocessor.java:241] [main] Processing chromosome C19642\r\n", "Processing chromosome C19642\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:49,953] [Preprocessor.java:241] [main] Processing chromosome C19648\r\n", "Processing chromosome C19648\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:50,007] [Preprocessor.java:241] [main] Processing chromosome C19658\r\n", "Processing chromosome C19658\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:50,066] [Preprocessor.java:241] [main] Processing chromosome C19660\r\n", "Processing chromosome C19660\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:50,126] [Preprocessor.java:241] [main] Processing chromosome C19672\r\n", "Processing chromosome C19672\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:50,159] [Preprocessor.java:241] [main] Processing chromosome C19680\r\n", "Processing chromosome C19680\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:50,223] [Preprocessor.java:241] [main] Processing chromosome C19682\r\n", "Processing chromosome C19682\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:50,282] [Preprocessor.java:241] [main] Processing chromosome C19686\r\n", "Processing chromosome C19686\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:50,312] [Preprocessor.java:241] [main] Processing chromosome C19688\r\n", "Processing chromosome C19688\r\n", "INFO [2014-03-08 06:23:50,320] [Preprocessor.java:241] [main] Processing chromosome C19702\r\n", "Processing chromosome C19702\r\n", "INFO [2014-03-08 06:23:50,340] [Preprocessor.java:241] [main] Processing chromosome C19708\r\n", "Processing chromosome C19708\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:50,356] [Preprocessor.java:241] [main] Processing chromosome C19718\r\n", "Processing chromosome C19718\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:50,404] [Preprocessor.java:241] [main] Processing chromosome C19722\r\n", "Processing chromosome C19722\r\n", "INFO [2014-03-08 06:23:50,455] [Preprocessor.java:241] [main] Processing chromosome C19750\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "Processing chromosome C19750\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:50,540] [Preprocessor.java:241] [main] Processing chromosome C19764\r\n", "Processing chromosome C19764\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:50,579] [Preprocessor.java:241] [main] Processing chromosome C19768\r\n", "Processing chromosome C19768\r\n", "INFO [2014-03-08 06:23:50,589] [Preprocessor.java:241] [main] Processing chromosome C19770\r\n", "Processing chromosome C19770\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:50,668] [Preprocessor.java:241] [main] Processing chromosome C19774\r\n", "Processing chromosome C19774\r\n", "INFO [2014-03-08 06:23:50,679] [Preprocessor.java:241] [main] Processing chromosome C19776\r\n", "Processing chromosome C19776\r\n", "INFO [2014-03-08 06:23:50,710] [Preprocessor.java:241] [main] Processing chromosome C19780\r\n", "Processing chromosome C19780\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:50,758] [Preprocessor.java:241] [main] Processing chromosome C19782\r\n", "Processing chromosome C19782\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:50,788] [Preprocessor.java:241] [main] Processing chromosome C19784\r\n", "Processing chromosome C19784\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:50,839] [Preprocessor.java:241] [main] Processing chromosome C19786\r\n", "Processing chromosome C19786\r\n", "INFO [2014-03-08 06:23:50,851] [Preprocessor.java:241] [main] Processing chromosome C19812\r\n", "Processing chromosome C19812\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:50,887] [Preprocessor.java:241] [main] Processing chromosome C19814\r\n", "Processing chromosome C19814\r\n", "INFO [2014-03-08 06:23:50,896] [Preprocessor.java:241] [main] Processing chromosome C19822\r\n", "Processing chromosome C19822\r\n", "INFO [2014-03-08 06:23:50,918] [Preprocessor.java:241] [main] Processing chromosome C19824\r\n", "Processing chromosome C19824\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:50,963] [Preprocessor.java:241] [main] Processing chromosome C19830\r\n", "Processing chromosome C19830\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:51,015] [Preprocessor.java:241] [main] Processing chromosome C19838\r\n", "Processing chromosome C19838\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:51,039] [Preprocessor.java:241] [main] Processing chromosome C19842\r\n", "Processing chromosome C19842\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:51,120] [Preprocessor.java:241] [main] Processing chromosome C19850\r\n", "Processing chromosome C19850\r\n", "INFO [2014-03-08 06:23:51,134] [Preprocessor.java:241] [main] Processing chromosome C19868\r\n", "Processing chromosome C19868\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:51,168] [Preprocessor.java:241] [main] Processing chromosome C19902\r\n", "Processing chromosome C19902\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:51,236] [Preprocessor.java:241] [main] Processing chromosome C19914\r\n", "Processing chromosome C19914\r\n", "INFO [2014-03-08 06:23:51,245] [Preprocessor.java:241] [main] Processing chromosome C19916\r\n", "Processing chromosome C19916\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:51,283] [Preprocessor.java:241] [main] Processing chromosome C19962\r\n", "Processing chromosome C19962\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:51,318] [Preprocessor.java:241] [main] Processing chromosome C19966\r\n", "Processing chromosome C19966\r\n", "INFO [2014-03-08 06:23:51,334] [Preprocessor.java:241] [main] Processing chromosome C19968\r\n", "Processing chromosome C19968\r\n", "INFO [2014-03-08 06:23:51,353] [Preprocessor.java:241] [main] Processing chromosome C19972\r\n", "Processing chromosome C19972\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:51,391] [Preprocessor.java:241] [main] Processing chromosome C19974\r\n", "Processing chromosome C19974\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:51,416] [Preprocessor.java:241] [main] Processing chromosome C19976\r\n", "Processing chromosome C19976\r\n", "INFO [2014-03-08 06:23:51,428] [Preprocessor.java:241] [main] Processing chromosome C19984\r\n", "Processing chromosome C19984\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:51,523] [Preprocessor.java:241] [main] Processing chromosome C19990\r\n", "Processing chromosome C19990\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:51,631] [Preprocessor.java:241] [main] Processing chromosome C19996\r\n", "Processing chromosome C19996\r\n", "INFO [2014-03-08 06:23:51,662] [Preprocessor.java:241] [main] Processing chromosome C20004\r\n", "Processing chromosome C20004\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:51,683] [Preprocessor.java:241] [main] Processing chromosome C20010\r\n", "Processing chromosome C20010\r\n", "INFO [2014-03-08 06:23:51,692] [Preprocessor.java:241] [main] Processing chromosome C20012\r\n", "Processing chromosome C20012\r\n", "INFO [2014-03-08 06:23:51,707] [Preprocessor.java:241] [main] Processing chromosome C20014\r\n", "Processing chromosome C20014\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:51,741] [Preprocessor.java:241] [main] Processing chromosome C20018\r\n", "Processing chromosome C20018\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:51,809] [Preprocessor.java:241] [main] Processing chromosome C20052\r\n", "Processing chromosome C20052\r\n", "INFO [2014-03-08 06:23:51,822] [Preprocessor.java:241] [main] Processing chromosome C20054\r\n", "Processing chromosome C20054\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:51,858] [Preprocessor.java:241] [main] Processing chromosome C20056\r\n", "Processing chromosome C20056\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:51,935] [Preprocessor.java:241] [main] Processing chromosome C20060\r\n", "Processing chromosome C20060\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:51,963] [Preprocessor.java:241] [main] Processing chromosome C20080\r\n", "Processing chromosome C20080\r\n", "INFO [2014-03-08 06:23:51,977] [Preprocessor.java:241] [main] Processing chromosome C20084\r\n", "Processing chromosome C20084\r\n", "INFO [2014-03-08 06:23:51,992] [Preprocessor.java:241] [main] Processing chromosome C20088\r\n", "Processing chromosome C20088\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:52,043] [Preprocessor.java:241] [main] Processing chromosome C20090\r\n", "Processing chromosome C20090\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:52,080] [Preprocessor.java:241] [main] Processing chromosome C20094\r\n", "Processing chromosome C20094\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:52,108] [Preprocessor.java:241] [main] Processing chromosome C20102\r\n", "Processing chromosome C20102\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:52,164] [Preprocessor.java:241] [main] Processing chromosome C20104\r\n", "Processing chromosome C20104\r\n", "INFO [2014-03-08 06:23:52,172] [Preprocessor.java:241] [main] Processing chromosome C20108\r\n", "Processing chromosome C20108\r\n", "INFO [2014-03-08 06:23:52,205] [Preprocessor.java:241] [main] Processing chromosome C2011\r\n", "Processing chromosome C2011\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:52,282] [Preprocessor.java:241] [main] Processing chromosome C20112\r\n", "Processing chromosome C20112\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:52,319] [Preprocessor.java:241] [main] Processing chromosome C20116\r\n", "Processing chromosome C20116\r\n", "INFO [2014-03-08 06:23:52,334] [Preprocessor.java:241] [main] Processing chromosome C2013\r\n", "Processing chromosome C2013\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:52,393] [Preprocessor.java:241] [main] Processing chromosome C20170\r\n", "Processing chromosome C20170\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:52,426] [Preprocessor.java:241] [main] Processing chromosome C20174\r\n", "Processing chromosome C20174\r\n", "INFO [2014-03-08 06:23:52,447] [Preprocessor.java:241] [main] Processing chromosome C20176\r\n", "Processing chromosome C20176\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:52,476] [Preprocessor.java:241] [main] Processing chromosome C20186\r\n", "Processing chromosome C20186\r\n", "INFO [2014-03-08 06:23:52,493] [Preprocessor.java:241] [main] Processing chromosome C20188\r\n", "Processing chromosome C20188\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:52,550] [Preprocessor.java:241] [main] Processing chromosome C20192\r\n", "Processing chromosome C20192\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:52,581] [Preprocessor.java:241] [main] Processing chromosome C20198\r\n", "Processing chromosome C20198\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:52,636] [Preprocessor.java:241] [main] Processing chromosome C20210\r\n", "Processing chromosome C20210\r\n", "INFO [2014-03-08 06:23:52,654] [Preprocessor.java:241] [main] Processing chromosome C20224\r\n", "Processing chromosome C20224\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:52,696] [Preprocessor.java:241] [main] Processing chromosome C20238\r\n", "Processing chromosome C20238\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:52,772] [Preprocessor.java:241] [main] Processing chromosome C20244\r\n", "Processing chromosome C20244\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:52,831] [Preprocessor.java:241] [main] Processing chromosome C20248\r\n", "Processing chromosome C20248\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:52,865] [Preprocessor.java:241] [main] Processing chromosome C20250\r\n", "Processing chromosome C20250\r\n", "INFO [2014-03-08 06:23:52,875] [Preprocessor.java:241] [main] Processing chromosome C20252\r\n", "Processing chromosome C20252\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:52,902] [Preprocessor.java:241] [main] Processing chromosome C20256\r\n", "Processing chromosome C20256\r\n", "INFO [2014-03-08 06:23:52,931] [Preprocessor.java:241] [main] Processing chromosome C20262\r\n", "Processing chromosome C20262\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:52,998] [Preprocessor.java:241] [main] Processing chromosome C20282\r\n", "Processing chromosome C20282\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:53,074] [Preprocessor.java:241] [main] Processing chromosome C20284\r\n", "Processing chromosome C20284\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:53,096] [Preprocessor.java:241] [main] Processing chromosome C20294\r\n", "Processing chromosome C20294\r\n", "INFO [2014-03-08 06:23:53,122] [Preprocessor.java:241] [main] Processing chromosome C20298\r\n", "Processing chromosome C20298\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:53,159] [Preprocessor.java:241] [main] Processing chromosome C20300\r\n", "Processing chromosome C20300\r\n", "INFO [2014-03-08 06:23:53,180] [Preprocessor.java:241] [main] Processing chromosome C20316\r\n", "Processing chromosome C20316\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:53,243] [Preprocessor.java:241] [main] Processing chromosome C20318\r\n", "Processing chromosome C20318\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:53,259] [Preprocessor.java:241] [main] Processing chromosome C20322\r\n", "Processing chromosome C20322\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:53,329] [Preprocessor.java:241] [main] Processing chromosome C20332\r\n", "Processing chromosome C20332\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:53,390] [Preprocessor.java:241] [main] Processing chromosome C20334\r\n", "Processing chromosome C20334\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:53,421] [Preprocessor.java:241] [main] Processing chromosome C20350\r\n", "Processing chromosome C20350\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:53,474] [Preprocessor.java:241] [main] Processing chromosome C20360\r\n", "Processing chromosome C20360\r\n", "INFO [2014-03-08 06:23:53,493] [Preprocessor.java:241] [main] Processing chromosome C20364\r\n", "Processing chromosome C20364\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:53,554] [Preprocessor.java:241] [main] Processing chromosome C20366\r\n", "Processing chromosome C20366\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:53,591] [Preprocessor.java:241] [main] Processing chromosome C20368\r\n", "Processing chromosome C20368\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:53,648] [Preprocessor.java:241] [main] Processing chromosome C20374\r\n", "Processing chromosome C20374\r\n", "INFO [2014-03-08 06:23:53,665] [Preprocessor.java:241] [main] Processing chromosome C20378\r\n", "Processing chromosome C20378\r\n", "INFO [2014-03-08 06:23:53,674] [Preprocessor.java:241] [main] Processing chromosome C20380\r\n", "Processing chromosome C20380\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:53,679] [Preprocessor.java:241] [main] Processing chromosome C20390\r\n", "Processing chromosome C20390\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:53,737] [Preprocessor.java:241] [main] Processing chromosome C20392\r\n", "Processing chromosome C20392\r\n", "INFO [2014-03-08 06:23:53,771] [Preprocessor.java:241] [main] Processing chromosome C20398\r\n", "Processing chromosome C20398\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:53,789] [Preprocessor.java:241] [main] Processing chromosome C20400\r\n", "Processing chromosome C20400\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:53,845] [Preprocessor.java:241] [main] Processing chromosome C20406\r\n", "Processing chromosome C20406\r\n", "INFO [2014-03-08 06:23:53,853] [Preprocessor.java:241] [main] Processing chromosome C2041\r\n", "Processing chromosome C2041\r\n", "INFO [2014-03-08 06:23:53,891] [Preprocessor.java:241] [main] Processing chromosome C20410\r\n", "Processing chromosome C20410\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:53,925] [Preprocessor.java:241] [main] Processing chromosome C20412\r\n", "Processing chromosome C20412\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:53,962] [Preprocessor.java:241] [main] Processing chromosome C20422\r\n", "Processing chromosome C20422\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:53,999] [Preprocessor.java:241] [main] Processing chromosome C20426\r\n", "Processing chromosome C20426\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:54,059] [Preprocessor.java:241] [main] Processing chromosome C20430\r\n", "Processing chromosome C20430\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:54,115] [Preprocessor.java:241] [main] Processing chromosome C20434\r\n", "Processing chromosome C20434\r\n", "INFO [2014-03-08 06:23:54,134] [Preprocessor.java:241] [main] Processing chromosome C20446\r\n", "Processing chromosome C20446\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:54,189] [Preprocessor.java:241] [main] Processing chromosome C20450\r\n", "Processing chromosome C20450\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:54,217] [Preprocessor.java:241] [main] Processing chromosome C20462\r\n", "Processing chromosome C20462\r\n", "INFO [2014-03-08 06:23:54,254] [Preprocessor.java:241] [main] Processing chromosome C20470\r\n", "Processing chromosome C20470\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:54,298] [Preprocessor.java:241] [main] Processing chromosome C20474\r\n", "Processing chromosome C20474\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:54,335] [Preprocessor.java:241] [main] Processing chromosome C20476\r\n", "Processing chromosome C20476\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:54,382] [Preprocessor.java:241] [main] Processing chromosome C20478\r\n", "Processing chromosome C20478\r\n", "INFO [2014-03-08 06:23:54,389] [Preprocessor.java:241] [main] Processing chromosome C20480\r\n", "Processing chromosome C20480\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:54,460] [Preprocessor.java:241] [main] Processing chromosome C20482\r\n", "Processing chromosome C20482\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:54,548] [Preprocessor.java:241] [main] Processing chromosome C20484\r\n", "Processing chromosome C20484\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:54,599] [Preprocessor.java:241] [main] Processing chromosome C20522\r\n", "Processing chromosome C20522\r\n", "INFO [2014-03-08 06:23:54,623] [Preprocessor.java:241] [main] Processing chromosome C20524\r\n", "Processing chromosome C20524\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:54,685] [Preprocessor.java:241] [main] Processing chromosome C20532\r\n", "Processing chromosome C20532\r\n", "INFO [2014-03-08 06:23:54,708] [Preprocessor.java:241] [main] Processing chromosome C20538\r\n", "Processing chromosome C20538\r\n", "INFO [2014-03-08 06:23:54,731] [Preprocessor.java:241] [main] Processing chromosome C20544\r\n", "Processing chromosome C20544\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:54,778] [Preprocessor.java:241] [main] Processing chromosome C20546\r\n", "Processing chromosome C20546\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:54,798] [Preprocessor.java:241] [main] Processing chromosome C20550\r\n", "Processing chromosome C20550\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:54,838] [Preprocessor.java:241] [main] Processing chromosome C20552\r\n", "Processing chromosome C20552\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:54,890] [Preprocessor.java:241] [main] Processing chromosome C20574\r\n", "Processing chromosome C20574\r\n", "INFO [2014-03-08 06:23:54,901] [Preprocessor.java:241] [main] Processing chromosome C20576\r\n", "Processing chromosome C20576\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:54,956] [Preprocessor.java:241] [main] Processing chromosome C20578\r\n", "Processing chromosome C20578\r\n", "INFO [2014-03-08 06:23:54,989] [Preprocessor.java:241] [main] Processing chromosome C20582\r\n", "Processing chromosome C20582\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:55,045] [Preprocessor.java:241] [main] Processing chromosome C20586\r\n", "Processing chromosome C20586\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:55,099] [Preprocessor.java:241] [main] Processing chromosome C20594\r\n", "Processing chromosome C20594\r\n", "INFO [2014-03-08 06:23:55,149] [Preprocessor.java:241] [main] Processing chromosome C20610\r\n", "Processing chromosome C20610\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:55,172] [Preprocessor.java:241] [main] Processing chromosome C20614\r\n", "Processing chromosome C20614\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:55,243] [Preprocessor.java:241] [main] Processing chromosome C20626\r\n", "Processing chromosome C20626\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:55,298] [Preprocessor.java:241] [main] Processing chromosome C20630\r\n", "Processing chromosome C20630\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:55,317] [Preprocessor.java:241] [main] Processing chromosome C20636\r\n", "Processing chromosome C20636\r\n", "INFO [2014-03-08 06:23:55,323] [Preprocessor.java:241] [main] Processing chromosome C20640\r\n", "Processing chromosome C20640\r\n", "INFO [2014-03-08 06:23:55,338] [Preprocessor.java:241] [main] Processing chromosome C20642\r\n", "Processing chromosome C20642\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:55,363] [Preprocessor.java:241] [main] Processing chromosome C20644\r\n", "Processing chromosome C20644\r\n", "INFO [2014-03-08 06:23:55,385] [Preprocessor.java:241] [main] Processing chromosome C20646\r\n", "Processing chromosome C20646\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:55,418] [Preprocessor.java:241] [main] Processing chromosome C20652\r\n", "Processing chromosome C20652\r\n", "INFO [2014-03-08 06:23:55,436] [Preprocessor.java:241] [main] Processing chromosome C20654\r\n", "Processing chromosome C20654\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:55,464] [Preprocessor.java:241] [main] Processing chromosome C20664\r\n", "Processing chromosome C20664\r\n", "INFO [2014-03-08 06:23:55,500] [Preprocessor.java:241] [main] Processing chromosome C2067\r\n", "Processing chromosome C2067\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:55,564] [Preprocessor.java:241] [main] Processing chromosome C20676\r\n", "Processing chromosome C20676\r\n", "INFO [2014-03-08 06:23:55,570] [Preprocessor.java:241] [main] Processing chromosome C20678\r\n", "Processing chromosome C20678\r\n", "INFO [2014-03-08 06:23:55,577] [Preprocessor.java:241] [main] Processing chromosome C20680\r\n", "Processing chromosome C20680\r\n", "INFO [2014-03-08 06:23:55,600] [Preprocessor.java:241] [main] Processing chromosome C20688\r\n", "Processing chromosome C20688\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:55,630] [Preprocessor.java:241] [main] Processing chromosome C20692\r\n", "Processing chromosome C20692\r\n", "INFO [2014-03-08 06:23:55,656] [Preprocessor.java:241] [main] Processing chromosome C20694\r\n", "Processing chromosome C20694\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:55,679] [Preprocessor.java:241] [main] Processing chromosome C20704\r\n", "Processing chromosome C20704\r\n", "INFO [2014-03-08 06:23:55,722] [Preprocessor.java:241] [main] Processing chromosome C2071\r\n", "Processing chromosome C2071\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:55,787] [Preprocessor.java:241] [main] Processing chromosome C20716\r\n", "Processing chromosome C20716\r\n", "INFO [2014-03-08 06:23:55,806] [Preprocessor.java:241] [main] Processing chromosome C20720\r\n", "Processing chromosome C20720\r\n", "INFO [2014-03-08 06:23:55,818] [Preprocessor.java:241] [main] Processing chromosome C20740\r\n", "Processing chromosome C20740\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:55,854] [Preprocessor.java:241] [main] Processing chromosome C20754\r\n", "Processing chromosome C20754\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:55,898] [Preprocessor.java:241] [main] Processing chromosome C20756\r\n", "Processing chromosome C20756\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:55,956] [Preprocessor.java:241] [main] Processing chromosome C20760\r\n", "Processing chromosome C20760\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:55,995] [Preprocessor.java:241] [main] Processing chromosome C20764\r\n", "Processing chromosome C20764\r\n", "INFO [2014-03-08 06:23:56,024] [Preprocessor.java:241] [main] Processing chromosome C20766\r\n", "Processing chromosome C20766\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:56,041] [Preprocessor.java:241] [main] Processing chromosome C20768\r\n", "Processing chromosome C20768\r\n", "INFO [2014-03-08 06:23:56,060] [Preprocessor.java:241] [main] Processing chromosome C20774\r\n", "Processing chromosome C20774\r\n", "INFO [2014-03-08 06:23:56,077] [Preprocessor.java:241] [main] Processing chromosome C20782\r\n", "Processing chromosome C20782\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:56,110] [Preprocessor.java:241] [main] Processing chromosome C20790\r\n", "Processing chromosome C20790\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:56,205] [Preprocessor.java:241] [main] Processing chromosome C20808\r\n", "Processing chromosome C20808\r\n", "INFO [2014-03-08 06:23:56,212] [Preprocessor.java:241] [main] Processing chromosome C20828\r\n", "Processing chromosome C20828\r\n", "INFO [2014-03-08 06:23:56,228] [Preprocessor.java:241] [main] Processing chromosome C20848\r\n", "Processing chromosome C20848\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:56,264] [Preprocessor.java:241] [main] Processing chromosome C20858\r\n", "Processing chromosome C20858\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:56,319] [Preprocessor.java:241] [main] Processing chromosome C2087\r\n", "Processing chromosome C2087\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:56,368] [Preprocessor.java:241] [main] Processing chromosome C20870\r\n", "Processing chromosome C20870\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:56,428] [Preprocessor.java:241] [main] Processing chromosome C20874\r\n", "Processing chromosome C20874\r\n", "INFO [2014-03-08 06:23:56,465] [Preprocessor.java:241] [main] Processing chromosome C20884\r\n", "Processing chromosome C20884\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:56,531] [Preprocessor.java:241] [main] Processing chromosome C20888\r\n", "Processing chromosome C20888\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:56,575] [Preprocessor.java:241] [main] Processing chromosome C2089\r\n", "Processing chromosome C2089\r\n", "INFO [2014-03-08 06:23:56,616] [Preprocessor.java:241] [main] Processing chromosome C20900\r\n", "Processing chromosome C20900\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:56,678] [Preprocessor.java:241] [main] Processing chromosome C20906\r\n", "Processing chromosome C20906\r\n", "INFO [2014-03-08 06:23:56,725] [Preprocessor.java:241] [main] Processing chromosome C20916\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "Processing chromosome C20916\r\n", "INFO [2014-03-08 06:23:56,772] [Preprocessor.java:241] [main] Processing chromosome C20920\r\n", "Processing chromosome C20920\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:56,787] [Preprocessor.java:241] [main] Processing chromosome C20928\r\n", "Processing chromosome C20928\r\n", "INFO [2014-03-08 06:23:56,802] [Preprocessor.java:241] [main] Processing chromosome C20942\r\n", "Processing chromosome C20942\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:56,843] [Preprocessor.java:241] [main] Processing chromosome C20946\r\n", "Processing chromosome C20946\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:56,886] [Preprocessor.java:241] [main] Processing chromosome C20948\r\n", "Processing chromosome C20948\r\n", "INFO [2014-03-08 06:23:56,909] [Preprocessor.java:241] [main] Processing chromosome C20986\r\n", "Processing chromosome C20986\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:56,946] [Preprocessor.java:241] [main] Processing chromosome C21000\r\n", "Processing chromosome C21000\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:57,004] [Preprocessor.java:241] [main] Processing chromosome C21008\r\n", "Processing chromosome C21008\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:57,054] [Preprocessor.java:241] [main] Processing chromosome C21012\r\n", "Processing chromosome C21012\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:57,099] [Preprocessor.java:241] [main] Processing chromosome C21018\r\n", "Processing chromosome C21018\r\n", "INFO [2014-03-08 06:23:57,133] [Preprocessor.java:241] [main] Processing chromosome C21032\r\n", "Processing chromosome C21032\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:57,162] [Preprocessor.java:241] [main] Processing chromosome C21036\r\n", "Processing chromosome C21036\r\n", "INFO [2014-03-08 06:23:57,211] [Preprocessor.java:241] [main] Processing chromosome C21038\r\n", "Processing chromosome C21038\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:57,262] [Preprocessor.java:241] [main] Processing chromosome C21046\r\n", "Processing chromosome C21046\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:57,295] [Preprocessor.java:241] [main] Processing chromosome C21050\r\n", "Processing chromosome C21050\r\n", "INFO [2014-03-08 06:23:57,310] [Preprocessor.java:241] [main] Processing chromosome C21060\r\n", "Processing chromosome C21060\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:57,365] [Preprocessor.java:241] [main] Processing chromosome C21062\r\n", "Processing chromosome C21062\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:57,379] [Preprocessor.java:241] [main] Processing chromosome C21064\r\n", "Processing chromosome C21064\r\n", "INFO [2014-03-08 06:23:57,411] [Preprocessor.java:241] [main] Processing chromosome C21072\r\n", "Processing chromosome C21072\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:57,441] [Preprocessor.java:241] [main] Processing chromosome C21094\r\n", "Processing chromosome C21094\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:57,517] [Preprocessor.java:241] [main] Processing chromosome C21096\r\n", "Processing chromosome C21096\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:57,537] [Preprocessor.java:241] [main] Processing chromosome C21102\r\n", "Processing chromosome C21102\r\n", "INFO [2014-03-08 06:23:57,565] [Preprocessor.java:241] [main] Processing chromosome C21104\r\n", "Processing chromosome C21104\r\n", "INFO [2014-03-08 06:23:57,570] [Preprocessor.java:241] [main] Processing chromosome C21108\r\n", "Processing chromosome C21108\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:57,632] [Preprocessor.java:241] [main] Processing chromosome C21120\r\n", "Processing chromosome C21120\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:57,656] [Preprocessor.java:241] [main] Processing chromosome C21122\r\n", "Processing chromosome C21122\r\n", "INFO [2014-03-08 06:23:57,682] [Preprocessor.java:241] [main] Processing chromosome C21128\r\n", "Processing chromosome C21128\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:57,742] [Preprocessor.java:241] [main] Processing chromosome C21130\r\n", "Processing chromosome C21130\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:57,761] [Preprocessor.java:241] [main] Processing chromosome C21134\r\n", "Processing chromosome C21134\r\n", "INFO [2014-03-08 06:23:57,766] [Preprocessor.java:241] [main] Processing chromosome C21144\r\n", "Processing chromosome C21144\r\n", "INFO [2014-03-08 06:23:57,796] [Preprocessor.java:241] [main] Processing chromosome C21154\r\n", "Processing chromosome C21154\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:57,812] [Preprocessor.java:241] [main] Processing chromosome C21156\r\n", "Processing chromosome C21156\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:57,861] [Preprocessor.java:241] [main] Processing chromosome C21160\r\n", "Processing chromosome C21160\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:57,904] [Preprocessor.java:241] [main] Processing chromosome C21170\r\n", "Processing chromosome C21170\r\n", "INFO [2014-03-08 06:23:57,952] [Preprocessor.java:241] [main] Processing chromosome C21176\r\n", "Processing chromosome C21176\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:58,022] [Preprocessor.java:241] [main] Processing chromosome C21178\r\n", "Processing chromosome C21178\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:58,066] [Preprocessor.java:241] [main] Processing chromosome C21186\r\n", "Processing chromosome C21186\r\n", "INFO [2014-03-08 06:23:58,074] [Preprocessor.java:241] [main] Processing chromosome C21188\r\n", "Processing chromosome C21188\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:58,131] [Preprocessor.java:241] [main] Processing chromosome C21194\r\n", "Processing chromosome C21194\r\n", "INFO [2014-03-08 06:23:58,137] [Preprocessor.java:241] [main] Processing chromosome C21218\r\n", "Processing chromosome C21218\r\n", "INFO [2014-03-08 06:23:58,154] [Preprocessor.java:241] [main] Processing chromosome C21226\r\n", "Processing chromosome C21226\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:58,189] [Preprocessor.java:241] [main] Processing chromosome C21236\r\n", "Processing chromosome C21236\r\n", "INFO [2014-03-08 06:23:58,214] [Preprocessor.java:241] [main] Processing chromosome C21238\r\n", "Processing chromosome C21238\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:58,233] [Preprocessor.java:241] [main] Processing chromosome C21256\r\n", "Processing chromosome C21256\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:58,269] [Preprocessor.java:241] [main] Processing chromosome C21260\r\n", "Processing chromosome C21260\r\n", "INFO [2014-03-08 06:23:58,323] [Preprocessor.java:241] [main] Processing chromosome C21278\r\n", "Processing chromosome C21278\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:58,345] [Preprocessor.java:241] [main] Processing chromosome C21282\r\n", "Processing chromosome C21282\r\n", "INFO [2014-03-08 06:23:58,361] [Preprocessor.java:241] [main] Processing chromosome C21286\r\n", "Processing chromosome C21286\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:58,449] [Preprocessor.java:241] [main] Processing chromosome C21292\r\n", "Processing chromosome C21292\r\n", "INFO [2014-03-08 06:23:58,452] [Preprocessor.java:241] [main] Processing chromosome C21298\r\n", "Processing chromosome C21298\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:58,500] [Preprocessor.java:241] [main] Processing chromosome C21304\r\n", "Processing chromosome C21304\r\n", "INFO [2014-03-08 06:23:58,519] [Preprocessor.java:241] [main] Processing chromosome C21306\r\n", "Processing chromosome C21306\r\n", "INFO [2014-03-08 06:23:58,534] [Preprocessor.java:241] [main] Processing chromosome C21308\r\n", "Processing chromosome C21308\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:58,571] [Preprocessor.java:241] [main] Processing chromosome C21310\r\n", "Processing chromosome C21310\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:58,594] [Preprocessor.java:241] [main] Processing chromosome C21312\r\n", "Processing chromosome C21312\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:58,654] [Preprocessor.java:241] [main] Processing chromosome C21314\r\n", "Processing chromosome C21314\r\n", "INFO [2014-03-08 06:23:58,664] [Preprocessor.java:241] [main] Processing chromosome C21324\r\n", "Processing chromosome C21324\r\n", "INFO [2014-03-08 06:23:58,679] [Preprocessor.java:241] [main] Processing chromosome C21330\r\n", "Processing chromosome C21330\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:58,699] [Preprocessor.java:241] [main] Processing chromosome C21336\r\n", "Processing chromosome C21336\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:58,764] [Preprocessor.java:241] [main] Processing chromosome C21346\r\n", "Processing chromosome C21346\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:58,804] [Preprocessor.java:241] [main] Processing chromosome C21354\r\n", "Processing chromosome C21354\r\n", "INFO [2014-03-08 06:23:58,816] [Preprocessor.java:241] [main] Processing chromosome C21356\r\n", "Processing chromosome C21356\r\n", "INFO [2014-03-08 06:23:58,831] [Preprocessor.java:241] [main] Processing chromosome C21372\r\n", "Processing chromosome C21372\r\n", "INFO [2014-03-08 06:23:58,850] [Preprocessor.java:241] [main] Processing chromosome C21374\r\n", "Processing chromosome C21374\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:58,904] [Preprocessor.java:241] [main] Processing chromosome C21378\r\n", "Processing chromosome C21378\r\n", "INFO [2014-03-08 06:23:58,946] [Preprocessor.java:241] [main] Processing chromosome C21380\r\n", "Processing chromosome C21380\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:59,007] [Preprocessor.java:241] [main] Processing chromosome C21386\r\n", "Processing chromosome C21386\r\n", "INFO [2014-03-08 06:23:59,033] [Preprocessor.java:241] [main] Processing chromosome C21404\r\n", "Processing chromosome C21404\r\n", "INFO [2014-03-08 06:23:59,041] [Preprocessor.java:241] [main] Processing chromosome C2141\r\n", "Processing chromosome C2141\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:59,128] [Preprocessor.java:241] [main] Processing chromosome C21418\r\n", "Processing chromosome C21418\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:59,175] [Preprocessor.java:241] [main] Processing chromosome C21438\r\n", "Processing chromosome C21438\r\n", "INFO [2014-03-08 06:23:59,193] [Preprocessor.java:241] [main] Processing chromosome C2145\r\n", "Processing chromosome C2145\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:59,266] [Preprocessor.java:241] [main] Processing chromosome C21454\r\n", "Processing chromosome C21454\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:59,300] [Preprocessor.java:241] [main] Processing chromosome C21460\r\n", "Processing chromosome C21460\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:59,333] [Preprocessor.java:241] [main] Processing chromosome C21474\r\n", "Processing chromosome C21474\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:59,400] [Preprocessor.java:241] [main] Processing chromosome C21484\r\n", "Processing chromosome C21484\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:59,445] [Preprocessor.java:241] [main] Processing chromosome C21494\r\n", "Processing chromosome C21494\r\n", "INFO [2014-03-08 06:23:59,454] [Preprocessor.java:241] [main] Processing chromosome C21500\r\n", "Processing chromosome C21500\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:59,495] [Preprocessor.java:241] [main] Processing chromosome C21502\r\n", "Processing chromosome C21502\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:59,557] [Preprocessor.java:241] [main] Processing chromosome C21504\r\n", "Processing chromosome C21504\r\n", "INFO [2014-03-08 06:23:59,570] [Preprocessor.java:241] [main] Processing chromosome C21508\r\n", "Processing chromosome C21508\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:59,595] [Preprocessor.java:241] [main] Processing chromosome C21516\r\n", "Processing chromosome C21516\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:59,644] [Preprocessor.java:241] [main] Processing chromosome C21518\r\n", "Processing chromosome C21518\r\n", "INFO [2014-03-08 06:23:59,652] [Preprocessor.java:241] [main] Processing chromosome C21544\r\n", "Processing chromosome C21544\r\n", "INFO [2014-03-08 06:23:59,661] [Preprocessor.java:241] [main] Processing chromosome C21548\r\n", "Processing chromosome C21548\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:59,708] [Preprocessor.java:241] [main] Processing chromosome C21550\r\n", "Processing chromosome C21550\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:59,763] [Preprocessor.java:241] [main] Processing chromosome C21554\r\n", "Processing chromosome C21554\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:59,817] [Preprocessor.java:241] [main] Processing chromosome C21560\r\n", "Processing chromosome C21560\r\n", "INFO [2014-03-08 06:23:59,827] [Preprocessor.java:241] [main] Processing chromosome C21564\r\n", "Processing chromosome C21564\r\n", "INFO [2014-03-08 06:23:59,832] [Preprocessor.java:241] [main] Processing chromosome C21566\r\n", "Processing chromosome C21566\r\n", "INFO [2014-03-08 06:23:59,857] [Preprocessor.java:241] [main] Processing chromosome C21572\r\n", "Processing chromosome C21572\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:59,928] [Preprocessor.java:241] [main] Processing chromosome C21578\r\n", "Processing chromosome C21578\r\n", "INFO [2014-03-08 06:23:59,941] [Preprocessor.java:241] [main] Processing chromosome C21582\r\n", "Processing chromosome C21582\r\n", "INFO [2014-03-08 06:23:59,950] [Preprocessor.java:241] [main] Processing chromosome C21586\r\n", "Processing chromosome C21586\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:23:59,975] [Preprocessor.java:241] [main] Processing chromosome C21588\r\n", "Processing chromosome C21588\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:00,032] [Preprocessor.java:241] [main] Processing chromosome C21590\r\n", "Processing chromosome C21590\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:00,098] [Preprocessor.java:241] [main] Processing chromosome C21596\r\n", "Processing chromosome C21596\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:00,130] [Preprocessor.java:241] [main] Processing chromosome C21610\r\n", "Processing chromosome C21610\r\n", "INFO [2014-03-08 06:24:00,156] [Preprocessor.java:241] [main] Processing chromosome C21614\r\n", "Processing chromosome C21614\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:00,189] [Preprocessor.java:241] [main] Processing chromosome C21616\r\n", "Processing chromosome C21616\r\n", "INFO [2014-03-08 06:24:00,219] [Preprocessor.java:241] [main] Processing chromosome C21622\r\n", "Processing chromosome C21622\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:00,259] [Preprocessor.java:241] [main] Processing chromosome C21624\r\n", "Processing chromosome C21624\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:00,284] [Preprocessor.java:241] [main] Processing chromosome C21634\r\n", "Processing chromosome C21634\r\n", "INFO [2014-03-08 06:24:00,301] [Preprocessor.java:241] [main] Processing chromosome C21636\r\n", "Processing chromosome C21636\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:00,329] [Preprocessor.java:241] [main] Processing chromosome C21638\r\n", "Processing chromosome C21638\r\n", "INFO [2014-03-08 06:24:00,342] [Preprocessor.java:241] [main] Processing chromosome C21650\r\n", "Processing chromosome C21650\r\n", "INFO [2014-03-08 06:24:00,360] [Preprocessor.java:241] [main] Processing chromosome C21652\r\n", "Processing chromosome C21652\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:00,397] [Preprocessor.java:241] [main] Processing chromosome C21654\r\n", "Processing chromosome C21654\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:00,470] [Preprocessor.java:241] [main] Processing chromosome C21670\r\n", "Processing chromosome C21670\r\n", "INFO [2014-03-08 06:24:00,476] [Preprocessor.java:241] [main] Processing chromosome C21684\r\n", "Processing chromosome C21684\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:00,498] [Preprocessor.java:241] [main] Processing chromosome C21694\r\n", "Processing chromosome C21694\r\n", "INFO [2014-03-08 06:24:00,534] [Preprocessor.java:241] [main] Processing chromosome C21696\r\n", "Processing chromosome C21696\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:00,575] [Preprocessor.java:241] [main] Processing chromosome C21702\r\n", "Processing chromosome C21702\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:00,630] [Preprocessor.java:241] [main] Processing chromosome C21710\r\n", "Processing chromosome C21710\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:00,655] [Preprocessor.java:241] [main] Processing chromosome C21716\r\n", "Processing chromosome C21716\r\n", "INFO [2014-03-08 06:24:00,685] [Preprocessor.java:241] [main] Processing chromosome C21720\r\n", "Processing chromosome C21720\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:00,719] [Preprocessor.java:241] [main] Processing chromosome C21722\r\n", "Processing chromosome C21722\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:00,781] [Preprocessor.java:241] [main] Processing chromosome C21724\r\n", "Processing chromosome C21724\r\n", "INFO [2014-03-08 06:24:00,803] [Preprocessor.java:241] [main] Processing chromosome C21728\r\n", "Processing chromosome C21728\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:00,829] [Preprocessor.java:241] [main] Processing chromosome C21730\r\n", "Processing chromosome C21730\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:00,866] [Preprocessor.java:241] [main] Processing chromosome C21750\r\n", "Processing chromosome C21750\r\n", "INFO [2014-03-08 06:24:00,877] [Preprocessor.java:241] [main] Processing chromosome C21764\r\n", "Processing chromosome C21764\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:00,923] [Preprocessor.java:241] [main] Processing chromosome C21766\r\n", "Processing chromosome C21766\r\n", "INFO [2014-03-08 06:24:00,936] [Preprocessor.java:241] [main] Processing chromosome C21780\r\n", "Processing chromosome C21780\r\n", "INFO [2014-03-08 06:24:00,949] [Preprocessor.java:241] [main] Processing chromosome C21782\r\n", "Processing chromosome C21782\r\n", "INFO [2014-03-08 06:24:00,956] [Preprocessor.java:241] [main] Processing chromosome C21784\r\n", "Processing chromosome C21784\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:00,972] [Preprocessor.java:241] [main] Processing chromosome C21790\r\n", "Processing chromosome C21790\r\n", "INFO [2014-03-08 06:24:00,989] [Preprocessor.java:241] [main] Processing chromosome C21792\r\n", "Processing chromosome C21792\r\n", "INFO [2014-03-08 06:24:01,018] [Preprocessor.java:241] [main] Processing chromosome C21796\r\n", "Processing chromosome C21796\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:01,071] [Preprocessor.java:241] [main] Processing chromosome C21802\r\n", "Processing chromosome C21802\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:01,107] [Preprocessor.java:241] [main] Processing chromosome C21804\r\n", "Processing chromosome C21804\r\n", "INFO [2014-03-08 06:24:01,114] [Preprocessor.java:241] [main] Processing chromosome C21812\r\n", "Processing chromosome C21812\r\n", "INFO [2014-03-08 06:24:01,121] [Preprocessor.java:241] [main] Processing chromosome C21820\r\n", "Processing chromosome C21820\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:01,136] [Preprocessor.java:241] [main] Processing chromosome C21834\r\n", "Processing chromosome C21834\r\n", "INFO [2014-03-08 06:24:01,157] [Preprocessor.java:241] [main] Processing chromosome C21840\r\n", "Processing chromosome C21840\r\n", "INFO [2014-03-08 06:24:01,161] [Preprocessor.java:241] [main] Processing chromosome C21848\r\n", "Processing chromosome C21848\r\n", "INFO [2014-03-08 06:24:01,168] [Preprocessor.java:241] [main] Processing chromosome C21852\r\n", "Processing chromosome C21852\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:01,188] [Preprocessor.java:241] [main] Processing chromosome C21854\r\n", "Processing chromosome C21854\r\n", "INFO [2014-03-08 06:24:01,231] [Preprocessor.java:241] [main] Processing chromosome C21858\r\n", "Processing chromosome C21858\r\n", "INFO [2014-03-08 06:24:01,240] [Preprocessor.java:241] [main] Processing chromosome C21862\r\n", "Processing chromosome C21862\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:01,278] [Preprocessor.java:241] [main] Processing chromosome C21868\r\n", "Processing chromosome C21868\r\n", "INFO [2014-03-08 06:24:01,287] [Preprocessor.java:241] [main] Processing chromosome C21870\r\n", "Processing chromosome C21870\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:01,296] [Preprocessor.java:241] [main] Processing chromosome C21884\r\n", "Processing chromosome C21884\r\n", "INFO [2014-03-08 06:24:01,314] [Preprocessor.java:241] [main] Processing chromosome C21892\r\n", "Processing chromosome C21892\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:01,364] [Preprocessor.java:241] [main] Processing chromosome C21896\r\n", "Processing chromosome C21896\r\n", "INFO [2014-03-08 06:24:01,371] [Preprocessor.java:241] [main] Processing chromosome C21924\r\n", "Processing chromosome C21924\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:01,440] [Preprocessor.java:241] [main] Processing chromosome C21942\r\n", "Processing chromosome C21942\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:01,468] [Preprocessor.java:241] [main] Processing chromosome C21944\r\n", "Processing chromosome C21944\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:01,517] [Preprocessor.java:241] [main] Processing chromosome C21956\r\n", "Processing chromosome C21956\r\n", "INFO [2014-03-08 06:24:01,530] [Preprocessor.java:241] [main] Processing chromosome C21994\r\n", "Processing chromosome C21994\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:01,563] [Preprocessor.java:241] [main] Processing chromosome C22000\r\n", "Processing chromosome C22000\r\n", "INFO [2014-03-08 06:24:01,585] [Preprocessor.java:241] [main] Processing chromosome C2201\r\n", "Processing chromosome C2201\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:01,648] [Preprocessor.java:241] [main] Processing chromosome C22010\r\n", "Processing chromosome C22010\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:01,662] [Preprocessor.java:241] [main] Processing chromosome C22012\r\n", "Processing chromosome C22012\r\n", "INFO [2014-03-08 06:24:01,687] [Preprocessor.java:241] [main] Processing chromosome C22018\r\n", "Processing chromosome C22018\r\n", "INFO [2014-03-08 06:24:01,711] [Preprocessor.java:241] [main] Processing chromosome C22020\r\n", "Processing chromosome C22020\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:01,742] [Preprocessor.java:241] [main] Processing chromosome C22028\r\n", "Processing chromosome C22028\r\n", "INFO [2014-03-08 06:24:01,746] [Preprocessor.java:241] [main] Processing chromosome C22032\r\n", "Processing chromosome C22032\r\n", "INFO [2014-03-08 06:24:01,757] [Preprocessor.java:241] [main] Processing chromosome C22036\r\n", "Processing chromosome C22036\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:01,792] [Preprocessor.java:241] [main] Processing chromosome C22046\r\n", "Processing chromosome C22046\r\n", "INFO [2014-03-08 06:24:01,817] [Preprocessor.java:241] [main] Processing chromosome C22048\r\n", "Processing chromosome C22048\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:01,825] [Preprocessor.java:241] [main] Processing chromosome C22056\r\n", "Processing chromosome C22056\r\n", "INFO [2014-03-08 06:24:01,832] [Preprocessor.java:241] [main] Processing chromosome C22058\r\n", "Processing chromosome C22058\r\n", "INFO [2014-03-08 06:24:01,872] [Preprocessor.java:241] [main] Processing chromosome C22060\r\n", "Processing chromosome C22060\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:01,937] [Preprocessor.java:241] [main] Processing chromosome C22074\r\n", "Processing chromosome C22074\r\n", "INFO [2014-03-08 06:24:01,975] [Preprocessor.java:241] [main] Processing chromosome C22084\r\n", "Processing chromosome C22084\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:01,997] [Preprocessor.java:241] [main] Processing chromosome C22092\r\n", "Processing chromosome C22092\r\n", "INFO [2014-03-08 06:24:02,015] [Preprocessor.java:241] [main] Processing chromosome C22094\r\n", "Processing chromosome C22094\r\n", "INFO [2014-03-08 06:24:02,027] [Preprocessor.java:241] [main] Processing chromosome C22096\r\n", "Processing chromosome C22096\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:02,052] [Preprocessor.java:241] [main] Processing chromosome C22100\r\n", "Processing chromosome C22100\r\n", "INFO [2014-03-08 06:24:02,078] [Preprocessor.java:241] [main] Processing chromosome C22106\r\n", "Processing chromosome C22106\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:02,096] [Preprocessor.java:241] [main] Processing chromosome C22110\r\n", "Processing chromosome C22110\r\n", "INFO [2014-03-08 06:24:02,125] [Preprocessor.java:241] [main] Processing chromosome C22112\r\n", "Processing chromosome C22112\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:02,198] [Preprocessor.java:241] [main] Processing chromosome C22114\r\n", "Processing chromosome C22114\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:02,245] [Preprocessor.java:241] [main] Processing chromosome C22118\r\n", "Processing chromosome C22118\r\n", "INFO [2014-03-08 06:24:02,268] [Preprocessor.java:241] [main] Processing chromosome C22120\r\n", "Processing chromosome C22120\r\n", "INFO [2014-03-08 06:24:02,290] [Preprocessor.java:241] [main] Processing chromosome C22124\r\n", "Processing chromosome C22124\r\n", "INFO [2014-03-08 06:24:02,294] [Preprocessor.java:241] [main] Processing chromosome C22130\r\n", "Processing chromosome C22130\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:02,310] [Preprocessor.java:241] [main] Processing chromosome C22136\r\n", "Processing chromosome C22136\r\n", "INFO [2014-03-08 06:24:02,338] [Preprocessor.java:241] [main] Processing chromosome C22138\r\n", "Processing chromosome C22138\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:02,363] [Preprocessor.java:241] [main] Processing chromosome C22140\r\n", "Processing chromosome C22140\r\n", "INFO [2014-03-08 06:24:02,394] [Preprocessor.java:241] [main] Processing chromosome C22142\r\n", "Processing chromosome C22142\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:02,479] [Preprocessor.java:241] [main] Processing chromosome C22146\r\n", "Processing chromosome C22146\r\n", "INFO [2014-03-08 06:24:02,501] [Preprocessor.java:241] [main] Processing chromosome C22148\r\n", "Processing chromosome C22148\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:02,518] [Preprocessor.java:241] [main] Processing chromosome C22164\r\n", "Processing chromosome C22164\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:02,565] [Preprocessor.java:241] [main] Processing chromosome C22168\r\n", "Processing chromosome C22168\r\n", "INFO [2014-03-08 06:24:02,588] [Preprocessor.java:241] [main] Processing chromosome C22174\r\n", "Processing chromosome C22174\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:02,626] [Preprocessor.java:241] [main] Processing chromosome C22192\r\n", "Processing chromosome C22192\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:02,684] [Preprocessor.java:241] [main] Processing chromosome C22194\r\n", "Processing chromosome C22194\r\n", "INFO [2014-03-08 06:24:02,707] [Preprocessor.java:241] [main] Processing chromosome C22198\r\n", "Processing chromosome C22198\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:02,719] [Preprocessor.java:241] [main] Processing chromosome C22202\r\n", "Processing chromosome C22202\r\n", "INFO [2014-03-08 06:24:02,751] [Preprocessor.java:241] [main] Processing chromosome C22208\r\n", "Processing chromosome C22208\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:02,775] [Preprocessor.java:241] [main] Processing chromosome C22216\r\n", "Processing chromosome C22216\r\n", "INFO [2014-03-08 06:24:02,786] [Preprocessor.java:241] [main] Processing chromosome C22220\r\n", "Processing chromosome C22220\r\n", "INFO [2014-03-08 06:24:02,813] [Preprocessor.java:241] [main] Processing chromosome C22232\r\n", "Processing chromosome C22232\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:02,854] [Preprocessor.java:241] [main] Processing chromosome C22242\r\n", "Processing chromosome C22242\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:02,894] [Preprocessor.java:241] [main] Processing chromosome C22248\r\n", "Processing chromosome C22248\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:02,959] [Preprocessor.java:241] [main] Processing chromosome C22264\r\n", "Processing chromosome C22264\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:02,999] [Preprocessor.java:241] [main] Processing chromosome C22268\r\n", "Processing chromosome C22268\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:03,054] [Preprocessor.java:241] [main] Processing chromosome C22274\r\n", "Processing chromosome C22274\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:03,115] [Preprocessor.java:241] [main] Processing chromosome C22276\r\n", "Processing chromosome C22276\r\n", "INFO [2014-03-08 06:24:03,138] [Preprocessor.java:241] [main] Processing chromosome C22280\r\n", "Processing chromosome C22280\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:03,201] [Preprocessor.java:241] [main] Processing chromosome C22284\r\n", "Processing chromosome C22284\r\n", "INFO [2014-03-08 06:24:03,216] [Preprocessor.java:241] [main] Processing chromosome C22290\r\n", "Processing chromosome C22290\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:03,257] [Preprocessor.java:241] [main] Processing chromosome C22294\r\n", "Processing chromosome C22294\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:03,308] [Preprocessor.java:241] [main] Processing chromosome C22298\r\n", "Processing chromosome C22298\r\n", "INFO [2014-03-08 06:24:03,313] [Preprocessor.java:241] [main] Processing chromosome C22302\r\n", "Processing chromosome C22302\r\n", "INFO [2014-03-08 06:24:03,335] [Preprocessor.java:241] [main] Processing chromosome C22304\r\n", "Processing chromosome C22304\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:03,356] [Preprocessor.java:241] [main] Processing chromosome C22310\r\n", "Processing chromosome C22310\r\n", "INFO [2014-03-08 06:24:03,367] [Preprocessor.java:241] [main] Processing chromosome C22322\r\n", "Processing chromosome C22322\r\n", "INFO [2014-03-08 06:24:03,376] [Preprocessor.java:241] [main] Processing chromosome C22324\r\n", "Processing chromosome C22324\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:03,429] [Preprocessor.java:241] [main] Processing chromosome C22326\r\n", "Processing chromosome C22326\r\n", "INFO [2014-03-08 06:24:03,447] [Preprocessor.java:241] [main] Processing chromosome C22330\r\n", "Processing chromosome C22330\r\n", "INFO [2014-03-08 06:24:03,451] [Preprocessor.java:241] [main] Processing chromosome C22340\r\n", "Processing chromosome C22340\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:03,498] [Preprocessor.java:241] [main] Processing chromosome C22344\r\n", "Processing chromosome C22344\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:03,545] [Preprocessor.java:241] [main] Processing chromosome C22346\r\n", "Processing chromosome C22346\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:03,564] [Preprocessor.java:241] [main] Processing chromosome C22360\r\n", "Processing chromosome C22360\r\n", "INFO [2014-03-08 06:24:03,579] [Preprocessor.java:241] [main] Processing chromosome C22368\r\n", "Processing chromosome C22368\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:03,651] [Preprocessor.java:241] [main] Processing chromosome C22382\r\n", "Processing chromosome C22382\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:03,669] [Preprocessor.java:241] [main] Processing chromosome C22384\r\n", "Processing chromosome C22384\r\n", "INFO [2014-03-08 06:24:03,686] [Preprocessor.java:241] [main] Processing chromosome C22386\r\n", "Processing chromosome C22386\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:03,732] [Preprocessor.java:241] [main] Processing chromosome C22388\r\n", "Processing chromosome C22388\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:03,776] [Preprocessor.java:241] [main] Processing chromosome C22390\r\n", "Processing chromosome C22390\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:03,875] [Preprocessor.java:241] [main] Processing chromosome C22400\r\n", "Processing chromosome C22400\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:03,880] [Preprocessor.java:241] [main] Processing chromosome C22406\r\n", "Processing chromosome C22406\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:03,960] [Preprocessor.java:241] [main] Processing chromosome C22414\r\n", "Processing chromosome C22414\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:03,996] [Preprocessor.java:241] [main] Processing chromosome C22422\r\n", "Processing chromosome C22422\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:04,068] [Preprocessor.java:241] [main] Processing chromosome C22424\r\n", "Processing chromosome C22424\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:04,097] [Preprocessor.java:241] [main] Processing chromosome C22440\r\n", "Processing chromosome C22440\r\n", "INFO [2014-03-08 06:24:04,133] [Preprocessor.java:241] [main] Processing chromosome C22444\r\n", "Processing chromosome C22444\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:04,152] [Preprocessor.java:241] [main] Processing chromosome C22452\r\n", "Processing chromosome C22452\r\n", "INFO [2014-03-08 06:24:04,182] [Preprocessor.java:241] [main] Processing chromosome C22456\r\n", "Processing chromosome C22456\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:04,240] [Preprocessor.java:241] [main] Processing chromosome C22458\r\n", "Processing chromosome C22458\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:04,328] [Preprocessor.java:241] [main] Processing chromosome C22468\r\n", "Processing chromosome C22468\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:04,365] [Preprocessor.java:241] [main] Processing chromosome C22470\r\n", "Processing chromosome C22470\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:04,407] [Preprocessor.java:241] [main] Processing chromosome C22484\r\n", "Processing chromosome C22484\r\n", "INFO [2014-03-08 06:24:04,411] [Preprocessor.java:241] [main] Processing chromosome C22486\r\n", "Processing chromosome C22486\r\n", "INFO [2014-03-08 06:24:04,419] [Preprocessor.java:241] [main] Processing chromosome C22492\r\n", "Processing chromosome C22492\r\n", "INFO [2014-03-08 06:24:04,446] [Preprocessor.java:241] [main] Processing chromosome C22494\r\n", "Processing chromosome C22494\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:04,531] [Preprocessor.java:241] [main] Processing chromosome C22500\r\n", "Processing chromosome C22500\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:04,563] [Preprocessor.java:241] [main] Processing chromosome C2251\r\n", "Processing chromosome C2251\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:04,630] [Preprocessor.java:241] [main] Processing chromosome C22514\r\n", "Processing chromosome C22514\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:04,751] [Preprocessor.java:241] [main] Processing chromosome C22516\r\n", "Processing chromosome C22516\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:04,796] [Preprocessor.java:241] [main] Processing chromosome C22518\r\n", "Processing chromosome C22518\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:04,851] [Preprocessor.java:241] [main] Processing chromosome C22520\r\n", "Processing chromosome C22520\r\n", "INFO [2014-03-08 06:24:04,857] [Preprocessor.java:241] [main] Processing chromosome C22524\r\n", "Processing chromosome C22524\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:04,891] [Preprocessor.java:241] [main] Processing chromosome C22536\r\n", "Processing chromosome C22536\r\n", "INFO [2014-03-08 06:24:04,916] [Preprocessor.java:241] [main] Processing chromosome C22538\r\n", "Processing chromosome C22538\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:04,942] [Preprocessor.java:241] [main] Processing chromosome C22542\r\n", "Processing chromosome C22542\r\n", "INFO [2014-03-08 06:24:04,957] [Preprocessor.java:241] [main] Processing chromosome C22546\r\n", "Processing chromosome C22546\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:05,007] [Preprocessor.java:241] [main] Processing chromosome C22552\r\n", "Processing chromosome C22552\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:05,040] [Preprocessor.java:241] [main] Processing chromosome C22558\r\n", "Processing chromosome C22558\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:05,103] [Preprocessor.java:241] [main] Processing chromosome C22566\r\n", "Processing chromosome C22566\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:05,147] [Preprocessor.java:241] [main] Processing chromosome C22576\r\n", "Processing chromosome C22576\r\n", "INFO [2014-03-08 06:24:05,151] [Preprocessor.java:241] [main] Processing chromosome C22584\r\n", "Processing chromosome C22584\r\n", "INFO [2014-03-08 06:24:05,189] [Preprocessor.java:241] [main] Processing chromosome C22586\r\n", "Processing chromosome C22586\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:05,224] [Preprocessor.java:241] [main] Processing chromosome C22594\r\n", "Processing chromosome C22594\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:05,272] [Preprocessor.java:241] [main] Processing chromosome C22598\r\n", "Processing chromosome C22598\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:05,374] [Preprocessor.java:241] [main] Processing chromosome C22600\r\n", "Processing chromosome C22600\r\n", "INFO [2014-03-08 06:24:05,408] [Preprocessor.java:241] [main] Processing chromosome C22602\r\n", "Processing chromosome C22602\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:05,449] [Preprocessor.java:241] [main] Processing chromosome C22610\r\n", "Processing chromosome C22610\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:05,484] [Preprocessor.java:241] [main] Processing chromosome C22614\r\n", "Processing chromosome C22614\r\n", "INFO [2014-03-08 06:24:05,513] [Preprocessor.java:241] [main] Processing chromosome C22622\r\n", "Processing chromosome C22622\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:05,585] [Preprocessor.java:241] [main] Processing chromosome C22624\r\n", "Processing chromosome C22624\r\n", "INFO [2014-03-08 06:24:05,622] [Preprocessor.java:241] [main] Processing chromosome C22626\r\n", "Processing chromosome C22626\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:05,669] [Preprocessor.java:241] [main] Processing chromosome C22628\r\n", "Processing chromosome C22628\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:05,756] [Preprocessor.java:241] [main] Processing chromosome C22632\r\n", "Processing chromosome C22632\r\n", "INFO [2014-03-08 06:24:05,772] [Preprocessor.java:241] [main] Processing chromosome C22636\r\n", "Processing chromosome C22636\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:05,780] [Preprocessor.java:241] [main] Processing chromosome C22638\r\n", "Processing chromosome C22638\r\n", "INFO [2014-03-08 06:24:05,814] [Preprocessor.java:241] [main] Processing chromosome C22640\r\n", "Processing chromosome C22640\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:05,836] [Preprocessor.java:241] [main] Processing chromosome C22644\r\n", "Processing chromosome C22644\r\n", "INFO [2014-03-08 06:24:05,848] [Preprocessor.java:241] [main] Processing chromosome C22648\r\n", "Processing chromosome C22648\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:05,908] [Preprocessor.java:241] [main] Processing chromosome C22662\r\n", "Processing chromosome C22662\r\n", "INFO [2014-03-08 06:24:05,934] [Preprocessor.java:241] [main] Processing chromosome C22666\r\n", "Processing chromosome C22666\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:05,970] [Preprocessor.java:241] [main] Processing chromosome C22668\r\n", "Processing chromosome C22668\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:05,988] [Preprocessor.java:241] [main] Processing chromosome C22676\r\n", "Processing chromosome C22676\r\n", "INFO [2014-03-08 06:24:06,010] [Preprocessor.java:241] [main] Processing chromosome C22678\r\n", "Processing chromosome C22678\r\n", "INFO [2014-03-08 06:24:06,027] [Preprocessor.java:241] [main] Processing chromosome C22682\r\n", "Processing chromosome C22682\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:06,048] [Preprocessor.java:241] [main] Processing chromosome C22704\r\n", "Processing chromosome C22704\r\n", "INFO [2014-03-08 06:24:06,058] [Preprocessor.java:241] [main] Processing chromosome C22708\r\n", "Processing chromosome C22708\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:06,104] [Preprocessor.java:241] [main] Processing chromosome C22710\r\n", "Processing chromosome C22710\r\n", "INFO [2014-03-08 06:24:06,109] [Preprocessor.java:241] [main] Processing chromosome C22712\r\n", "Processing chromosome C22712\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:06,164] [Preprocessor.java:241] [main] Processing chromosome C22714\r\n", "Processing chromosome C22714\r\n", "INFO [2014-03-08 06:24:06,174] [Preprocessor.java:241] [main] Processing chromosome C22722\r\n", "Processing chromosome C22722\r\n", "INFO [2014-03-08 06:24:06,201] [Preprocessor.java:241] [main] Processing chromosome C22728\r\n", "Processing chromosome C22728\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:06,224] [Preprocessor.java:241] [main] Processing chromosome C22732\r\n", "Processing chromosome C22732\r\n", "INFO [2014-03-08 06:24:06,254] [Preprocessor.java:241] [main] Processing chromosome C22734\r\n", "Processing chromosome C22734\r\n", "INFO [2014-03-08 06:24:06,264] [Preprocessor.java:241] [main] Processing chromosome C22748\r\n", "Processing chromosome C22748\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:06,291] [Preprocessor.java:241] [main] Processing chromosome C22750\r\n", "Processing chromosome C22750\r\n", "INFO [2014-03-08 06:24:06,310] [Preprocessor.java:241] [main] Processing chromosome C22754\r\n", "Processing chromosome C22754\r\n", "INFO [2014-03-08 06:24:06,330] [Preprocessor.java:241] [main] Processing chromosome C22758\r\n", "Processing chromosome C22758\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:06,345] [Preprocessor.java:241] [main] Processing chromosome C22772\r\n", "Processing chromosome C22772\r\n", "INFO [2014-03-08 06:24:06,358] [Preprocessor.java:241] [main] Processing chromosome C22778\r\n", "Processing chromosome C22778\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:06,397] [Preprocessor.java:241] [main] Processing chromosome C22784\r\n", "Processing chromosome C22784\r\n", "INFO [2014-03-08 06:24:06,427] [Preprocessor.java:241] [main] Processing chromosome C22790\r\n", "Processing chromosome C22790\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:06,477] [Preprocessor.java:241] [main] Processing chromosome C22794\r\n", "Processing chromosome C22794\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:06,508] [Preprocessor.java:241] [main] Processing chromosome C22798\r\n", "Processing chromosome C22798\r\n", "INFO [2014-03-08 06:24:06,533] [Preprocessor.java:241] [main] Processing chromosome C22800\r\n", "Processing chromosome C22800\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:06,556] [Preprocessor.java:241] [main] Processing chromosome C22802\r\n", "Processing chromosome C22802\r\n", "INFO [2014-03-08 06:24:06,573] [Preprocessor.java:241] [main] Processing chromosome C22804\r\n", "Processing chromosome C22804\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:06,621] [Preprocessor.java:241] [main] Processing chromosome C22810\r\n", "Processing chromosome C22810\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:06,651] [Preprocessor.java:241] [main] Processing chromosome C22822\r\n", "Processing chromosome C22822\r\n", "INFO [2014-03-08 06:24:06,685] [Preprocessor.java:241] [main] Processing chromosome C22824\r\n", "Processing chromosome C22824\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:06,722] [Preprocessor.java:241] [main] Processing chromosome C22842\r\n", "Processing chromosome C22842\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:06,779] [Preprocessor.java:241] [main] Processing chromosome C22844\r\n", "Processing chromosome C22844\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:06,814] [Preprocessor.java:241] [main] Processing chromosome C2285\r\n", "Processing chromosome C2285\r\n", "INFO [2014-03-08 06:24:06,851] [Preprocessor.java:241] [main] Processing chromosome C22856\r\n", "Processing chromosome C22856\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:06,887] [Preprocessor.java:241] [main] Processing chromosome C22862\r\n", "Processing chromosome C22862\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:06,940] [Preprocessor.java:241] [main] Processing chromosome C22866\r\n", "Processing chromosome C22866\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:06,973] [Preprocessor.java:241] [main] Processing chromosome C22868\r\n", "Processing chromosome C22868\r\n", "INFO [2014-03-08 06:24:07,012] [Preprocessor.java:241] [main] Processing chromosome C22870\r\n", "Processing chromosome C22870\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:07,087] [Preprocessor.java:241] [main] Processing chromosome C22888\r\n", "Processing chromosome C22888\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:07,176] [Preprocessor.java:241] [main] Processing chromosome C22890\r\n", "Processing chromosome C22890\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:07,187] [Preprocessor.java:241] [main] Processing chromosome C22892\r\n", "Processing chromosome C22892\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:07,240] [Preprocessor.java:241] [main] Processing chromosome C22894\r\n", "Processing chromosome C22894\r\n", "INFO [2014-03-08 06:24:07,248] [Preprocessor.java:241] [main] Processing chromosome C22902\r\n", "Processing chromosome C22902\r\n", "INFO [2014-03-08 06:24:07,256] [Preprocessor.java:241] [main] Processing chromosome C22910\r\n", "Processing chromosome C22910\r\n", "INFO [2014-03-08 06:24:07,268] [Preprocessor.java:241] [main] Processing chromosome C22926\r\n", "Processing chromosome C22926\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:07,338] [Preprocessor.java:241] [main] Processing chromosome C22928\r\n", "Processing chromosome C22928\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:07,350] [Preprocessor.java:241] [main] Processing chromosome C2293\r\n", "Processing chromosome C2293\r\n", "INFO [2014-03-08 06:24:07,388] [Preprocessor.java:241] [main] Processing chromosome C22940\r\n", "Processing chromosome C22940\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:07,449] [Preprocessor.java:241] [main] Processing chromosome C22944\r\n", "Processing chromosome C22944\r\n", "INFO [2014-03-08 06:24:07,471] [Preprocessor.java:241] [main] Processing chromosome C22948\r\n", "Processing chromosome C22948\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:07,501] [Preprocessor.java:241] [main] Processing chromosome C22958\r\n", "Processing chromosome C22958\r\n", "INFO [2014-03-08 06:24:07,529] [Preprocessor.java:241] [main] Processing chromosome C22968\r\n", "Processing chromosome C22968\r\n", "INFO [2014-03-08 06:24:07,549] [Preprocessor.java:241] [main] Processing chromosome C22972\r\n", "Processing chromosome C22972\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:07,618] [Preprocessor.java:241] [main] Processing chromosome C22978\r\n", "Processing chromosome C22978\r\n", "INFO [2014-03-08 06:24:07,649] [Preprocessor.java:241] [main] Processing chromosome C22980\r\n", "Processing chromosome C22980\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:07,689] [Preprocessor.java:241] [main] Processing chromosome C22982\r\n", "Processing chromosome C22982\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:07,718] [Preprocessor.java:241] [main] Processing chromosome C22990\r\n", "Processing chromosome C22990\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:07,772] [Preprocessor.java:241] [main] Processing chromosome C22994\r\n", "Processing chromosome C22994\r\n", "INFO [2014-03-08 06:24:07,805] [Preprocessor.java:241] [main] Processing chromosome C22996\r\n", "Processing chromosome C22996\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:07,873] [Preprocessor.java:241] [main] Processing chromosome C22998\r\n", "Processing chromosome C22998\r\n", "INFO [2014-03-08 06:24:07,878] [Preprocessor.java:241] [main] Processing chromosome C23000\r\n", "Processing chromosome C23000\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:07,920] [Preprocessor.java:241] [main] Processing chromosome C23010\r\n", "Processing chromosome C23010\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:07,977] [Preprocessor.java:241] [main] Processing chromosome C23016\r\n", "Processing chromosome C23016\r\n", "INFO [2014-03-08 06:24:07,996] [Preprocessor.java:241] [main] Processing chromosome C23024\r\n", "Processing chromosome C23024\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:08,038] [Preprocessor.java:241] [main] Processing chromosome C23030\r\n", "Processing chromosome C23030\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:08,080] [Preprocessor.java:241] [main] Processing chromosome C23036\r\n", "Processing chromosome C23036\r\n", "INFO [2014-03-08 06:24:08,113] [Preprocessor.java:241] [main] Processing chromosome C23040\r\n", "Processing chromosome C23040\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:08,124] [Preprocessor.java:241] [main] Processing chromosome C23042\r\n", "Processing chromosome C23042\r\n", "INFO [2014-03-08 06:24:08,130] [Preprocessor.java:241] [main] Processing chromosome C23048\r\n", "Processing chromosome C23048\r\n", "INFO [2014-03-08 06:24:08,144] [Preprocessor.java:241] [main] Processing chromosome C23080\r\n", "Processing chromosome C23080\r\n", "INFO [2014-03-08 06:24:08,163] [Preprocessor.java:241] [main] Processing chromosome C23092\r\n", "Processing chromosome C23092\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:08,178] [Preprocessor.java:241] [main] Processing chromosome C23096\r\n", "Processing chromosome C23096\r\n", "INFO [2014-03-08 06:24:08,208] [Preprocessor.java:241] [main] Processing chromosome C23098\r\n", "Processing chromosome C23098\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:08,246] [Preprocessor.java:241] [main] Processing chromosome C23102\r\n", "Processing chromosome C23102\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:08,287] [Preprocessor.java:241] [main] Processing chromosome C23104\r\n", "Processing chromosome C23104\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:08,339] [Preprocessor.java:241] [main] Processing chromosome C23106\r\n", "Processing chromosome C23106\r\n", "INFO [2014-03-08 06:24:08,348] [Preprocessor.java:241] [main] Processing chromosome C23110\r\n", "Processing chromosome C23110\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:08,456] [Preprocessor.java:241] [main] Processing chromosome C23116\r\n", "Processing chromosome C23116\r\n", "INFO [2014-03-08 06:24:08,474] [Preprocessor.java:241] [main] Processing chromosome C23120\r\n", "Processing chromosome C23120\r\n", "INFO [2014-03-08 06:24:08,478] [Preprocessor.java:241] [main] Processing chromosome C23124\r\n", "Processing chromosome C23124\r\n", "INFO [2014-03-08 06:24:08,498] [Preprocessor.java:241] [main] Processing chromosome C23144\r\n", "Processing chromosome C23144\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:08,507] [Preprocessor.java:241] [main] Processing chromosome C23154\r\n", "Processing chromosome C23154\r\n", "INFO [2014-03-08 06:24:08,526] [Preprocessor.java:241] [main] Processing chromosome C23158\r\n", "Processing chromosome C23158\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:08,565] [Preprocessor.java:241] [main] Processing chromosome C23162\r\n", "Processing chromosome C23162\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:08,606] [Preprocessor.java:241] [main] Processing chromosome C23166\r\n", "Processing chromosome C23166\r\n", "INFO [2014-03-08 06:24:08,609] [Preprocessor.java:241] [main] Processing chromosome C2317\r\n", "Processing chromosome C2317\r\n", "INFO [2014-03-08 06:24:08,647] [Preprocessor.java:241] [main] Processing chromosome C23172\r\n", "Processing chromosome C23172\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:08,697] [Preprocessor.java:241] [main] Processing chromosome C23180\r\n", "Processing chromosome C23180\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:08,763] [Preprocessor.java:241] [main] Processing chromosome C23182\r\n", "Processing chromosome C23182\r\n", "INFO [2014-03-08 06:24:08,786] [Preprocessor.java:241] [main] Processing chromosome C2319\r\n", "Processing chromosome C2319\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:08,826] [Preprocessor.java:241] [main] Processing chromosome C23192\r\n", "Processing chromosome C23192\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:08,893] [Preprocessor.java:241] [main] Processing chromosome C23196\r\n", "Processing chromosome C23196\r\n", "INFO [2014-03-08 06:24:08,914] [Preprocessor.java:241] [main] Processing chromosome C23210\r\n", "Processing chromosome C23210\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:08,930] [Preprocessor.java:241] [main] Processing chromosome C23214\r\n", "Processing chromosome C23214\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:08,982] [Preprocessor.java:241] [main] Processing chromosome C23220\r\n", "Processing chromosome C23220\r\n", "INFO [2014-03-08 06:24:08,995] [Preprocessor.java:241] [main] Processing chromosome C23222\r\n", "Processing chromosome C23222\r\n", "INFO [2014-03-08 06:24:09,005] [Preprocessor.java:241] [main] Processing chromosome C23230\r\n", "Processing chromosome C23230\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:09,073] [Preprocessor.java:241] [main] Processing chromosome C23232\r\n", "Processing chromosome C23232\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:09,117] [Preprocessor.java:241] [main] Processing chromosome C23238\r\n", "Processing chromosome C23238\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:09,137] [Preprocessor.java:241] [main] Processing chromosome C23248\r\n", "Processing chromosome C23248\r\n", "INFO [2014-03-08 06:24:09,162] [Preprocessor.java:241] [main] Processing chromosome C23254\r\n", "Processing chromosome C23254\r\n", "INFO [2014-03-08 06:24:09,179] [Preprocessor.java:241] [main] Processing chromosome C23256\r\n", "Processing chromosome C23256\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:09,211] [Preprocessor.java:241] [main] Processing chromosome C23258\r\n", "Processing chromosome C23258\r\n", "INFO [2014-03-08 06:24:09,221] [Preprocessor.java:241] [main] Processing chromosome C23264\r\n", "Processing chromosome C23264\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:09,274] [Preprocessor.java:241] [main] Processing chromosome C23272\r\n", "Processing chromosome C23272\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:09,322] [Preprocessor.java:241] [main] Processing chromosome C23274\r\n", "Processing chromosome C23274\r\n", "INFO [2014-03-08 06:24:09,330] [Preprocessor.java:241] [main] Processing chromosome C23276\r\n", "Processing chromosome C23276\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:09,355] [Preprocessor.java:241] [main] Processing chromosome C23278\r\n", "Processing chromosome C23278\r\n", "INFO [2014-03-08 06:24:09,364] [Preprocessor.java:241] [main] Processing chromosome C23298\r\n", "Processing chromosome C23298\r\n", "INFO [2014-03-08 06:24:09,395] [Preprocessor.java:241] [main] Processing chromosome C23316\r\n", "Processing chromosome C23316\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:09,441] [Preprocessor.java:241] [main] Processing chromosome C23328\r\n", "Processing chromosome C23328\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:09,461] [Preprocessor.java:241] [main] Processing chromosome C23330\r\n", "Processing chromosome C23330\r\n", "INFO [2014-03-08 06:24:09,492] [Preprocessor.java:241] [main] Processing chromosome C23338\r\n", "Processing chromosome C23338\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:09,522] [Preprocessor.java:241] [main] Processing chromosome C23360\r\n", "Processing chromosome C23360\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:09,557] [Preprocessor.java:241] [main] Processing chromosome C23362\r\n", "Processing chromosome C23362\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:09,609] [Preprocessor.java:241] [main] Processing chromosome C23366\r\n", "Processing chromosome C23366\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:09,702] [Preprocessor.java:241] [main] Processing chromosome C23370\r\n", "Processing chromosome C23370\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:09,754] [Preprocessor.java:241] [main] Processing chromosome C23372\r\n", "Processing chromosome C23372\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:09,796] [Preprocessor.java:241] [main] Processing chromosome C23378\r\n", "Processing chromosome C23378\r\n", "INFO [2014-03-08 06:24:09,805] [Preprocessor.java:241] [main] Processing chromosome C23390\r\n", "Processing chromosome C23390\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:09,819] [Preprocessor.java:241] [main] Processing chromosome C23400\r\n", "Processing chromosome C23400\r\n", "INFO [2014-03-08 06:24:09,865] [Preprocessor.java:241] [main] Processing chromosome C23422\r\n", "Processing chromosome C23422\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:09,882] [Preprocessor.java:241] [main] Processing chromosome C23424\r\n", "Processing chromosome C23424\r\n", "INFO [2014-03-08 06:24:09,915] [Preprocessor.java:241] [main] Processing chromosome C23426\r\n", "Processing chromosome C23426\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:09,936] [Preprocessor.java:241] [main] Processing chromosome C23428\r\n", "Processing chromosome C23428\r\n", "INFO [2014-03-08 06:24:09,975] [Preprocessor.java:241] [main] Processing chromosome C23432\r\n", "Processing chromosome C23432\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:10,036] [Preprocessor.java:241] [main] Processing chromosome C23438\r\n", "Processing chromosome C23438\r\n", "INFO [2014-03-08 06:24:10,065] [Preprocessor.java:241] [main] Processing chromosome C23440\r\n", "Processing chromosome C23440\r\n", "INFO [2014-03-08 06:24:10,073] [Preprocessor.java:241] [main] Processing chromosome C23442\r\n", "Processing chromosome C23442\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:10,108] [Preprocessor.java:241] [main] Processing chromosome C23444\r\n", "Processing chromosome C23444\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:10,164] [Preprocessor.java:241] [main] Processing chromosome C23446\r\n", "Processing chromosome C23446\r\n", "INFO [2014-03-08 06:24:10,178] [Preprocessor.java:241] [main] Processing chromosome C23452\r\n", "Processing chromosome C23452\r\n", "INFO [2014-03-08 06:24:10,182] [Preprocessor.java:241] [main] Processing chromosome C23454\r\n", "Processing chromosome C23454\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:10,231] [Preprocessor.java:241] [main] Processing chromosome C23460\r\n", "Processing chromosome C23460\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:10,290] [Preprocessor.java:241] [main] Processing chromosome C23468\r\n", "Processing chromosome C23468\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:10,306] [Preprocessor.java:241] [main] Processing chromosome C23470\r\n", "Processing chromosome C23470\r\n", "INFO [2014-03-08 06:24:10,328] [Preprocessor.java:241] [main] Processing chromosome C23472\r\n", "Processing chromosome C23472\r\n", "INFO [2014-03-08 06:24:10,343] [Preprocessor.java:241] [main] Processing chromosome C23482\r\n", "Processing chromosome C23482\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:10,363] [Preprocessor.java:241] [main] Processing chromosome C23484\r\n", "Processing chromosome C23484\r\n", "INFO [2014-03-08 06:24:10,380] [Preprocessor.java:241] [main] Processing chromosome C23490\r\n", "Processing chromosome C23490\r\n", "INFO [2014-03-08 06:24:10,385] [Preprocessor.java:241] [main] Processing chromosome C23492\r\n", "Processing chromosome C23492\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:10,430] [Preprocessor.java:241] [main] Processing chromosome C23494\r\n", "Processing chromosome C23494\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:10,468] [Preprocessor.java:241] [main] Processing chromosome C23498\r\n", "Processing chromosome C23498\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:10,519] [Preprocessor.java:241] [main] Processing chromosome C23500\r\n", "Processing chromosome C23500\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:10,569] [Preprocessor.java:241] [main] Processing chromosome C23502\r\n", "Processing chromosome C23502\r\n", "INFO [2014-03-08 06:24:10,573] [Preprocessor.java:241] [main] Processing chromosome C23512\r\n", "Processing chromosome C23512\r\n", "INFO [2014-03-08 06:24:10,584] [Preprocessor.java:241] [main] Processing chromosome C23514\r\n", "Processing chromosome C23514\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:10,618] [Preprocessor.java:241] [main] Processing chromosome C23530\r\n", "Processing chromosome C23530\r\n", "INFO [2014-03-08 06:24:10,628] [Preprocessor.java:241] [main] Processing chromosome C23564\r\n", "Processing chromosome C23564\r\n", "INFO [2014-03-08 06:24:10,668] [Preprocessor.java:241] [main] Processing chromosome C23566\r\n", "Processing chromosome C23566\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:10,687] [Preprocessor.java:241] [main] Processing chromosome C23570\r\n", "Processing chromosome C23570\r\n", "INFO [2014-03-08 06:24:10,720] [Preprocessor.java:241] [main] Processing chromosome C23572\r\n", "Processing chromosome C23572\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:10,748] [Preprocessor.java:241] [main] Processing chromosome C23580\r\n", "Processing chromosome C23580\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:10,804] [Preprocessor.java:241] [main] Processing chromosome C23582\r\n", "Processing chromosome C23582\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:10,844] [Preprocessor.java:241] [main] Processing chromosome C23586\r\n", "Processing chromosome C23586\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:10,894] [Preprocessor.java:241] [main] Processing chromosome C23592\r\n", "Processing chromosome C23592\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:10,934] [Preprocessor.java:241] [main] Processing chromosome C23594\r\n", "Processing chromosome C23594\r\n", "INFO [2014-03-08 06:24:10,961] [Preprocessor.java:241] [main] Processing chromosome C23608\r\n", "Processing chromosome C23608\r\n", "INFO [2014-03-08 06:24:10,971] [Preprocessor.java:241] [main] Processing chromosome C23616\r\n", "Processing chromosome C23616\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:11,010] [Preprocessor.java:241] [main] Processing chromosome C23638\r\n", "Processing chromosome C23638\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:11,145] [Preprocessor.java:241] [main] Processing chromosome C23642\r\n", "Processing chromosome C23642\r\n", "INFO [2014-03-08 06:24:11,183] [Preprocessor.java:241] [main] Processing chromosome C23648\r\n", "Processing chromosome C23648\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:11,215] [Preprocessor.java:241] [main] Processing chromosome C23662\r\n", "Processing chromosome C23662\r\n", "INFO [2014-03-08 06:24:11,222] [Preprocessor.java:241] [main] Processing chromosome C23676\r\n", "Processing chromosome C23676\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:11,252] [Preprocessor.java:241] [main] Processing chromosome C23682\r\n", "Processing chromosome C23682\r\n", "INFO [2014-03-08 06:24:11,276] [Preprocessor.java:241] [main] Processing chromosome C23690\r\n", "Processing chromosome C23690\r\n", "INFO [2014-03-08 06:24:11,282] [Preprocessor.java:241] [main] Processing chromosome C23700\r\n", "Processing chromosome C23700\r\n", "INFO [2014-03-08 06:24:11,288] [Preprocessor.java:241] [main] Processing chromosome C23702\r\n", "Processing chromosome C23702\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:11,325] [Preprocessor.java:241] [main] Processing chromosome C23714\r\n", "Processing chromosome C23714\r\n", "INFO [2014-03-08 06:24:11,335] [Preprocessor.java:241] [main] Processing chromosome C23716\r\n", "Processing chromosome C23716\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:11,381] [Preprocessor.java:241] [main] Processing chromosome C23726\r\n", "Processing chromosome C23726\r\n", "INFO [2014-03-08 06:24:11,389] [Preprocessor.java:241] [main] Processing chromosome C23732\r\n", "Processing chromosome C23732\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:11,402] [Preprocessor.java:241] [main] Processing chromosome C23734\r\n", "Processing chromosome C23734\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:11,461] [Preprocessor.java:241] [main] Processing chromosome C23742\r\n", "Processing chromosome C23742\r\n", "INFO [2014-03-08 06:24:11,482] [Preprocessor.java:241] [main] Processing chromosome C23744\r\n", "Processing chromosome C23744\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:11,553] [Preprocessor.java:241] [main] Processing chromosome C23756\r\n", "Processing chromosome C23756\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:11,620] [Preprocessor.java:241] [main] Processing chromosome C23760\r\n", "Processing chromosome C23760\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:11,724] [Preprocessor.java:241] [main] Processing chromosome C23762\r\n", "Processing chromosome C23762\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:11,782] [Preprocessor.java:241] [main] Processing chromosome C23772\r\n", "Processing chromosome C23772\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:11,840] [Preprocessor.java:241] [main] Processing chromosome C23776\r\n", "Processing chromosome C23776\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:11,852] [Preprocessor.java:241] [main] Processing chromosome C23778\r\n", "Processing chromosome C23778\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:11,934] [Preprocessor.java:241] [main] Processing chromosome C23786\r\n", "Processing chromosome C23786\r\n", "INFO [2014-03-08 06:24:11,949] [Preprocessor.java:241] [main] Processing chromosome C23796\r\n", "Processing chromosome C23796\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:11,996] [Preprocessor.java:241] [main] Processing chromosome C23800\r\n", "Processing chromosome C23800\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:12,007] [Preprocessor.java:241] [main] Processing chromosome C23808\r\n", "Processing chromosome C23808\r\n", "INFO [2014-03-08 06:24:12,013] [Preprocessor.java:241] [main] Processing chromosome C23812\r\n", "Processing chromosome C23812\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:12,061] [Preprocessor.java:241] [main] Processing chromosome C23818\r\n", "Processing chromosome C23818\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:12,125] [Preprocessor.java:241] [main] Processing chromosome C23822\r\n", "Processing chromosome C23822\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:12,172] [Preprocessor.java:241] [main] Processing chromosome C23828\r\n", "Processing chromosome C23828\r\n", "INFO [2014-03-08 06:24:12,216] [Preprocessor.java:241] [main] Processing chromosome C23836\r\n", "Processing chromosome C23836\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:12,290] [Preprocessor.java:241] [main] Processing chromosome C23838\r\n", "Processing chromosome C23838\r\n", "INFO [2014-03-08 06:24:12,309] [Preprocessor.java:241] [main] Processing chromosome C23858\r\n", "Processing chromosome C23858\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:12,335] [Preprocessor.java:241] [main] Processing chromosome C23860\r\n", "Processing chromosome C23860\r\n", "INFO [2014-03-08 06:24:12,363] [Preprocessor.java:241] [main] Processing chromosome C23866\r\n", "Processing chromosome C23866\r\n", "INFO [2014-03-08 06:24:12,367] [Preprocessor.java:241] [main] Processing chromosome C23868\r\n", "Processing chromosome C23868\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:12,430] [Preprocessor.java:241] [main] Processing chromosome C23882\r\n", "Processing chromosome C23882\r\n", "INFO [2014-03-08 06:24:12,459] [Preprocessor.java:241] [main] Processing chromosome C23886\r\n", "Processing chromosome C23886\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:12,497] [Preprocessor.java:241] [main] Processing chromosome C23890\r\n", "Processing chromosome C23890\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:12,544] [Preprocessor.java:241] [main] Processing chromosome C23896\r\n", "Processing chromosome C23896\r\n", "INFO [2014-03-08 06:24:12,568] [Preprocessor.java:241] [main] Processing chromosome C23900\r\n", "Processing chromosome C23900\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:12,596] [Preprocessor.java:241] [main] Processing chromosome C23904\r\n", "Processing chromosome C23904\r\n", "INFO [2014-03-08 06:24:12,600] [Preprocessor.java:241] [main] Processing chromosome C23908\r\n", "Processing chromosome C23908\r\n", "INFO [2014-03-08 06:24:12,606] [Preprocessor.java:241] [main] Processing chromosome C23922\r\n", "Processing chromosome C23922\r\n", "INFO [2014-03-08 06:24:12,626] [Preprocessor.java:241] [main] Processing chromosome C23926\r\n", "Processing chromosome C23926\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:12,654] [Preprocessor.java:241] [main] Processing chromosome C23930\r\n", "Processing chromosome C23930\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:12,712] [Preprocessor.java:241] [main] Processing chromosome C23944\r\n", "Processing chromosome C23944\r\n", "INFO [2014-03-08 06:24:12,730] [Preprocessor.java:241] [main] Processing chromosome C23946\r\n", "Processing chromosome C23946\r\n", "INFO [2014-03-08 06:24:12,746] [Preprocessor.java:241] [main] Processing chromosome C23956\r\n", "Processing chromosome C23956\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:12,769] [Preprocessor.java:241] [main] Processing chromosome C23968\r\n", "Processing chromosome C23968\r\n", "INFO [2014-03-08 06:24:12,782] [Preprocessor.java:241] [main] Processing chromosome C23974\r\n", "Processing chromosome C23974\r\n", "INFO [2014-03-08 06:24:12,791] [Preprocessor.java:241] [main] Processing chromosome C24000\r\n", "Processing chromosome C24000\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:12,827] [Preprocessor.java:241] [main] Processing chromosome C24008\r\n", "Processing chromosome C24008\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:12,898] [Preprocessor.java:241] [main] Processing chromosome C24014\r\n", "Processing chromosome C24014\r\n", "INFO [2014-03-08 06:24:12,905] [Preprocessor.java:241] [main] Processing chromosome C24020\r\n", "Processing chromosome C24020\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:12,946] [Preprocessor.java:241] [main] Processing chromosome C24022\r\n", "Processing chromosome C24022\r\n", "INFO [2014-03-08 06:24:12,961] [Preprocessor.java:241] [main] Processing chromosome C24024\r\n", "Processing chromosome C24024\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:12,998] [Preprocessor.java:241] [main] Processing chromosome C24030\r\n", "Processing chromosome C24030\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:13,050] [Preprocessor.java:241] [main] Processing chromosome C24036\r\n", "Processing chromosome C24036\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:13,103] [Preprocessor.java:241] [main] Processing chromosome C24042\r\n", "Processing chromosome C24042\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:13,129] [Preprocessor.java:241] [main] Processing chromosome C24044\r\n", "Processing chromosome C24044\r\n", "INFO [2014-03-08 06:24:13,135] [Preprocessor.java:241] [main] Processing chromosome C24052\r\n", "Processing chromosome C24052\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:13,178] [Preprocessor.java:241] [main] Processing chromosome C24068\r\n", "Processing chromosome C24068\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:13,230] [Preprocessor.java:241] [main] Processing chromosome C24074\r\n", "Processing chromosome C24074\r\n", "INFO [2014-03-08 06:24:13,247] [Preprocessor.java:241] [main] Processing chromosome C24090\r\n", "Processing chromosome C24090\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:13,288] [Preprocessor.java:241] [main] Processing chromosome C24098\r\n", "Processing chromosome C24098\r\n", "INFO [2014-03-08 06:24:13,296] [Preprocessor.java:241] [main] Processing chromosome C24112\r\n", "Processing chromosome C24112\r\n", "INFO [2014-03-08 06:24:13,314] [Preprocessor.java:241] [main] Processing chromosome C24114\r\n", "Processing chromosome C24114\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:13,363] [Preprocessor.java:241] [main] Processing chromosome C24118\r\n", "Processing chromosome C24118\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:13,399] [Preprocessor.java:241] [main] Processing chromosome C24128\r\n", "Processing chromosome C24128\r\n", "INFO [2014-03-08 06:24:13,433] [Preprocessor.java:241] [main] Processing chromosome C24134\r\n", "Processing chromosome C24134\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:13,444] [Preprocessor.java:241] [main] Processing chromosome C24138\r\n", "Processing chromosome C24138\r\n", "INFO [2014-03-08 06:24:13,451] [Preprocessor.java:241] [main] Processing chromosome C24148\r\n", "Processing chromosome C24148\r\n", "INFO [2014-03-08 06:24:13,488] [Preprocessor.java:241] [main] Processing chromosome C24156\r\n", "Processing chromosome C24156\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:13,498] [Preprocessor.java:241] [main] Processing chromosome C24158\r\n", "Processing chromosome C24158\r\n", "INFO [2014-03-08 06:24:13,528] [Preprocessor.java:241] [main] Processing chromosome C24160\r\n", "Processing chromosome C24160\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:13,568] [Preprocessor.java:241] [main] Processing chromosome C24184\r\n", "Processing chromosome C24184\r\n", "INFO [2014-03-08 06:24:13,595] [Preprocessor.java:241] [main] Processing chromosome C24196\r\n", "Processing chromosome C24196\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:13,625] [Preprocessor.java:241] [main] Processing chromosome C24204\r\n", "Processing chromosome C24204\r\n", "INFO [2014-03-08 06:24:13,629] [Preprocessor.java:241] [main] Processing chromosome C24224\r\n", "Processing chromosome C24224\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:13,672] [Preprocessor.java:241] [main] Processing chromosome C24226\r\n", "Processing chromosome C24226\r\n", "INFO [2014-03-08 06:24:13,694] [Preprocessor.java:241] [main] Processing chromosome C24232\r\n", "Processing chromosome C24232\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:13,733] [Preprocessor.java:241] [main] Processing chromosome C24242\r\n", "Processing chromosome C24242\r\n", "INFO [2014-03-08 06:24:13,746] [Preprocessor.java:241] [main] Processing chromosome C24244\r\n", "Processing chromosome C24244\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:13,786] [Preprocessor.java:241] [main] Processing chromosome C24248\r\n", "Processing chromosome C24248\r\n", "INFO [2014-03-08 06:24:13,800] [Preprocessor.java:241] [main] Processing chromosome C24252\r\n", "Processing chromosome C24252\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:13,832] [Preprocessor.java:241] [main] Processing chromosome C24254\r\n", "Processing chromosome C24254\r\n", "INFO [2014-03-08 06:24:13,853] [Preprocessor.java:241] [main] Processing chromosome C24270\r\n", "Processing chromosome C24270\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:13,898] [Preprocessor.java:241] [main] Processing chromosome C24274\r\n", "Processing chromosome C24274\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:13,919] [Preprocessor.java:241] [main] Processing chromosome C24276\r\n", "Processing chromosome C24276\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:13,974] [Preprocessor.java:241] [main] Processing chromosome C24280\r\n", "Processing chromosome C24280\r\n", "INFO [2014-03-08 06:24:13,985] [Preprocessor.java:241] [main] Processing chromosome C24292\r\n", "Processing chromosome C24292\r\n", "INFO [2014-03-08 06:24:14,013] [Preprocessor.java:241] [main] Processing chromosome C24294\r\n", "Processing chromosome C24294\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:14,026] [Preprocessor.java:241] [main] Processing chromosome C24316\r\n", "Processing chromosome C24316\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:14,077] [Preprocessor.java:241] [main] Processing chromosome C24318\r\n", "Processing chromosome C24318\r\n", "INFO [2014-03-08 06:24:14,089] [Preprocessor.java:241] [main] Processing chromosome C24320\r\n", "Processing chromosome C24320\r\n", "INFO [2014-03-08 06:24:14,103] [Preprocessor.java:241] [main] Processing chromosome C24328\r\n", "Processing chromosome C24328\r\n", "INFO [2014-03-08 06:24:14,117] [Preprocessor.java:241] [main] Processing chromosome C24334\r\n", "Processing chromosome C24334\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:14,156] [Preprocessor.java:241] [main] Processing chromosome C24342\r\n", "Processing chromosome C24342\r\n", "INFO [2014-03-08 06:24:14,168] [Preprocessor.java:241] [main] Processing chromosome C24346\r\n", "Processing chromosome C24346\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:14,218] [Preprocessor.java:241] [main] Processing chromosome C24380\r\n", "Processing chromosome C24380\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:14,234] [Preprocessor.java:241] [main] Processing chromosome C24384\r\n", "Processing chromosome C24384\r\n", "INFO [2014-03-08 06:24:14,247] [Preprocessor.java:241] [main] Processing chromosome C24398\r\n", "Processing chromosome C24398\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:14,307] [Preprocessor.java:241] [main] Processing chromosome C24400\r\n", "Processing chromosome C24400\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:14,357] [Preprocessor.java:241] [main] Processing chromosome C24418\r\n", "Processing chromosome C24418\r\n", "INFO [2014-03-08 06:24:14,371] [Preprocessor.java:241] [main] Processing chromosome C24420\r\n", "Processing chromosome C24420\r\n", "INFO [2014-03-08 06:24:14,387] [Preprocessor.java:241] [main] Processing chromosome C24426\r\n", "Processing chromosome C24426\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:14,394] [Preprocessor.java:241] [main] Processing chromosome C24428\r\n", "Processing chromosome C24428\r\n", "INFO [2014-03-08 06:24:14,437] [Preprocessor.java:241] [main] Processing chromosome C24432\r\n", "Processing chromosome C24432\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:14,464] [Preprocessor.java:241] [main] Processing chromosome C24436\r\n", "Processing chromosome C24436\r\n", "INFO [2014-03-08 06:24:14,480] [Preprocessor.java:241] [main] Processing chromosome C24438\r\n", "Processing chromosome C24438\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:14,504] [Preprocessor.java:241] [main] Processing chromosome C24440\r\n", "Processing chromosome C24440\r\n", "INFO [2014-03-08 06:24:14,522] [Preprocessor.java:241] [main] Processing chromosome C24442\r\n", "Processing chromosome C24442\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:14,567] [Preprocessor.java:241] [main] Processing chromosome C24446\r\n", "Processing chromosome C24446\r\n", "INFO [2014-03-08 06:24:14,572] [Preprocessor.java:241] [main] Processing chromosome C24450\r\n", "Processing chromosome C24450\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:14,606] [Preprocessor.java:241] [main] Processing chromosome C24454\r\n", "Processing chromosome C24454\r\n", "INFO [2014-03-08 06:24:14,622] [Preprocessor.java:241] [main] Processing chromosome C24456\r\n", "Processing chromosome C24456\r\n", "INFO [2014-03-08 06:24:14,627] [Preprocessor.java:241] [main] Processing chromosome C24464\r\n", "Processing chromosome C24464\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:14,664] [Preprocessor.java:241] [main] Processing chromosome C24478\r\n", "Processing chromosome C24478\r\n", "INFO [2014-03-08 06:24:14,691] [Preprocessor.java:241] [main] Processing chromosome C24494\r\n", "Processing chromosome C24494\r\n", "INFO [2014-03-08 06:24:14,705] [Preprocessor.java:241] [main] Processing chromosome C24498\r\n", "Processing chromosome C24498\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:14,725] [Preprocessor.java:241] [main] Processing chromosome C24514\r\n", "Processing chromosome C24514\r\n", "INFO [2014-03-08 06:24:14,756] [Preprocessor.java:241] [main] Processing chromosome C24516\r\n", "Processing chromosome C24516\r\n", "INFO [2014-03-08 06:24:14,762] [Preprocessor.java:241] [main] Processing chromosome C24520\r\n", "Processing chromosome C24520\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:14,820] [Preprocessor.java:241] [main] Processing chromosome C24524\r\n", "Processing chromosome C24524\r\n", "INFO [2014-03-08 06:24:14,838] [Preprocessor.java:241] [main] Processing chromosome C24530\r\n", "Processing chromosome C24530\r\n", "INFO [2014-03-08 06:24:14,843] [Preprocessor.java:241] [main] Processing chromosome C24536\r\n", "Processing chromosome C24536\r\n", "INFO [2014-03-08 06:24:14,854] [Preprocessor.java:241] [main] Processing chromosome C24538\r\n", "Processing chromosome C24538\r\n", "INFO [2014-03-08 06:24:14,857] [Preprocessor.java:241] [main] Processing chromosome C24556\r\n", "Processing chromosome C24556\r\n", "INFO [2014-03-08 06:24:14,867] [Preprocessor.java:241] [main] Processing chromosome C24562\r\n", "Processing chromosome C24562\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:14,929] [Preprocessor.java:241] [main] Processing chromosome C24564\r\n", "Processing chromosome C24564\r\n", "INFO [2014-03-08 06:24:14,953] [Preprocessor.java:241] [main] Processing chromosome C24566\r\n", "Processing chromosome C24566\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:14,990] [Preprocessor.java:241] [main] Processing chromosome C24570\r\n", "Processing chromosome C24570\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:15,048] [Preprocessor.java:241] [main] Processing chromosome C24580\r\n", "Processing chromosome C24580\r\n", "INFO [2014-03-08 06:24:15,058] [Preprocessor.java:241] [main] Processing chromosome C24588\r\n", "Processing chromosome C24588\r\n", "INFO [2014-03-08 06:24:15,062] [Preprocessor.java:241] [main] Processing chromosome C2459\r\n", "Processing chromosome C2459\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:15,109] [Preprocessor.java:241] [main] Processing chromosome C24590\r\n", "Processing chromosome C24590\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:15,176] [Preprocessor.java:241] [main] Processing chromosome C24604\r\n", "Processing chromosome C24604\r\n", "INFO [2014-03-08 06:24:15,180] [Preprocessor.java:241] [main] Processing chromosome C24608\r\n", "Processing chromosome C24608\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:15,264] [Preprocessor.java:241] [main] Processing chromosome C24616\r\n", "Processing chromosome C24616\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:15,295] [Preprocessor.java:241] [main] Processing chromosome C24628\r\n", "Processing chromosome C24628\r\n", "INFO [2014-03-08 06:24:15,325] [Preprocessor.java:241] [main] Processing chromosome C24632\r\n", "Processing chromosome C24632\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:15,353] [Preprocessor.java:241] [main] Processing chromosome C24634\r\n", "Processing chromosome C24634\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:15,429] [Preprocessor.java:241] [main] Processing chromosome C24640\r\n", "Processing chromosome C24640\r\n", "INFO [2014-03-08 06:24:15,434] [Preprocessor.java:241] [main] Processing chromosome C24642\r\n", "Processing chromosome C24642\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:15,448] [Preprocessor.java:241] [main] Processing chromosome C24650\r\n", "Processing chromosome C24650\r\n", "INFO [2014-03-08 06:24:15,464] [Preprocessor.java:241] [main] Processing chromosome C24654\r\n", "Processing chromosome C24654\r\n", "INFO [2014-03-08 06:24:15,487] [Preprocessor.java:241] [main] Processing chromosome C24658\r\n", "Processing chromosome C24658\r\n", "INFO [2014-03-08 06:24:15,491] [Preprocessor.java:241] [main] Processing chromosome C24672\r\n", "Processing chromosome C24672\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:15,508] [Preprocessor.java:241] [main] Processing chromosome C24676\r\n", "Processing chromosome C24676\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:15,563] [Preprocessor.java:241] [main] Processing chromosome C24678\r\n", "Processing chromosome C24678\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:15,615] [Preprocessor.java:241] [main] Processing chromosome C24682\r\n", "Processing chromosome C24682\r\n", "INFO [2014-03-08 06:24:15,621] [Preprocessor.java:241] [main] Processing chromosome C24686\r\n", "Processing chromosome C24686\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:15,656] [Preprocessor.java:241] [main] Processing chromosome C2469\r\n", "Processing chromosome C2469\r\n", "INFO [2014-03-08 06:24:15,699] [Preprocessor.java:241] [main] Processing chromosome C24698\r\n", "Processing chromosome C24698\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:15,735] [Preprocessor.java:241] [main] Processing chromosome C24704\r\n", "Processing chromosome C24704\r\n", "INFO [2014-03-08 06:24:15,750] [Preprocessor.java:241] [main] Processing chromosome C24710\r\n", "Processing chromosome C24710\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:15,778] [Preprocessor.java:241] [main] Processing chromosome C24718\r\n", "Processing chromosome C24718\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:15,826] [Preprocessor.java:241] [main] Processing chromosome C24724\r\n", "Processing chromosome C24724\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:15,875] [Preprocessor.java:241] [main] Processing chromosome C24726\r\n", "Processing chromosome C24726\r\n", "INFO [2014-03-08 06:24:15,883] [Preprocessor.java:241] [main] Processing chromosome C24734\r\n", "Processing chromosome C24734\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:15,916] [Preprocessor.java:241] [main] Processing chromosome C24740\r\n", "Processing chromosome C24740\r\n", "INFO [2014-03-08 06:24:15,930] [Preprocessor.java:241] [main] Processing chromosome C24744\r\n", "Processing chromosome C24744\r\n", "INFO [2014-03-08 06:24:15,947] [Preprocessor.java:241] [main] Processing chromosome C24748\r\n", "Processing chromosome C24748\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:15,972] [Preprocessor.java:241] [main] Processing chromosome C24750\r\n", "Processing chromosome C24750\r\n", "INFO [2014-03-08 06:24:16,002] [Preprocessor.java:241] [main] Processing chromosome C24756\r\n", "Processing chromosome C24756\r\n", "INFO [2014-03-08 06:24:16,008] [Preprocessor.java:241] [main] Processing chromosome C24758\r\n", "Processing chromosome C24758\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:16,034] [Preprocessor.java:241] [main] Processing chromosome C24766\r\n", "Processing chromosome C24766\r\n", "INFO [2014-03-08 06:24:16,043] [Preprocessor.java:241] [main] Processing chromosome C24778\r\n", "Processing chromosome C24778\r\n", "INFO [2014-03-08 06:24:16,047] [Preprocessor.java:241] [main] Processing chromosome C2479\r\n", "Processing chromosome C2479\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:16,086] [Preprocessor.java:241] [main] Processing chromosome C24790\r\n", "Processing chromosome C24790\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:16,141] [Preprocessor.java:241] [main] Processing chromosome C24804\r\n", "Processing chromosome C24804\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:16,188] [Preprocessor.java:241] [main] Processing chromosome C24814\r\n", "Processing chromosome C24814\r\n", "INFO [2014-03-08 06:24:16,213] [Preprocessor.java:241] [main] Processing chromosome C24818\r\n", "Processing chromosome C24818\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:16,267] [Preprocessor.java:241] [main] Processing chromosome C24820\r\n", "Processing chromosome C24820\r\n", "INFO [2014-03-08 06:24:16,289] [Preprocessor.java:241] [main] Processing chromosome C24824\r\n", "Processing chromosome C24824\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:16,360] [Preprocessor.java:241] [main] Processing chromosome C24826\r\n", "Processing chromosome C24826\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:16,419] [Preprocessor.java:241] [main] Processing chromosome C24828\r\n", "Processing chromosome C24828\r\n", "INFO [2014-03-08 06:24:16,441] [Preprocessor.java:241] [main] Processing chromosome C24850\r\n", "Processing chromosome C24850\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:16,456] [Preprocessor.java:241] [main] Processing chromosome C24862\r\n", "Processing chromosome C24862\r\n", "INFO [2014-03-08 06:24:16,479] [Preprocessor.java:241] [main] Processing chromosome C24868\r\n", "Processing chromosome C24868\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:16,521] [Preprocessor.java:241] [main] Processing chromosome C24874\r\n", "Processing chromosome C24874\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:16,586] [Preprocessor.java:241] [main] Processing chromosome C24888\r\n", "Processing chromosome C24888\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:16,641] [Preprocessor.java:241] [main] Processing chromosome C24892\r\n", "Processing chromosome C24892\r\n", "INFO [2014-03-08 06:24:16,646] [Preprocessor.java:241] [main] Processing chromosome C24900\r\n", "Processing chromosome C24900\r\n", "INFO [2014-03-08 06:24:16,649] [Preprocessor.java:241] [main] Processing chromosome C24902\r\n", "Processing chromosome C24902\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:16,663] [Preprocessor.java:241] [main] Processing chromosome C24910\r\n", "Processing chromosome C24910\r\n", "INFO [2014-03-08 06:24:16,692] [Preprocessor.java:241] [main] Processing chromosome C24914\r\n", "Processing chromosome C24914\r\n", "INFO [2014-03-08 06:24:16,700] [Preprocessor.java:241] [main] Processing chromosome C24916\r\n", "Processing chromosome C24916\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:16,772] [Preprocessor.java:241] [main] Processing chromosome C24920\r\n", "Processing chromosome C24920\r\n", "INFO [2014-03-08 06:24:16,780] [Preprocessor.java:241] [main] Processing chromosome C24932\r\n", "Processing chromosome C24932\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:16,822] [Preprocessor.java:241] [main] Processing chromosome C24934\r\n", "Processing chromosome C24934\r\n", "INFO [2014-03-08 06:24:16,867] [Preprocessor.java:241] [main] Processing chromosome C24942\r\n", "Processing chromosome C24942\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:16,918] [Preprocessor.java:241] [main] Processing chromosome C24952\r\n", "Processing chromosome C24952\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:17,018] [Preprocessor.java:241] [main] Processing chromosome C24954\r\n", "Processing chromosome C24954\r\n", "INFO [2014-03-08 06:24:17,021] [Preprocessor.java:241] [main] Processing chromosome C24960\r\n", "Processing chromosome C24960\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:17,118] [Preprocessor.java:241] [main] Processing chromosome C24962\r\n", "Processing chromosome C24962\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:17,188] [Preprocessor.java:241] [main] Processing chromosome C24964\r\n", "Processing chromosome C24964\r\n", "INFO [2014-03-08 06:24:17,207] [Preprocessor.java:241] [main] Processing chromosome C24966\r\n", "Processing chromosome C24966\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:17,230] [Preprocessor.java:241] [main] Processing chromosome C2497\r\n", "Processing chromosome C2497\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:17,336] [Preprocessor.java:241] [main] Processing chromosome C24974\r\n", "Processing chromosome C24974\r\n", "INFO [2014-03-08 06:24:17,370] [Preprocessor.java:241] [main] Processing chromosome C24984\r\n", "Processing chromosome C24984\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:17,423] [Preprocessor.java:241] [main] Processing chromosome C24994\r\n", "Processing chromosome C24994\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:17,540] [Preprocessor.java:241] [main] Processing chromosome C25\r\n", "Processing chromosome C25\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:17,614] [Preprocessor.java:241] [main] Processing chromosome C25014\r\n", "Processing chromosome C25014\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:17,676] [Preprocessor.java:241] [main] Processing chromosome C25026\r\n", "Processing chromosome C25026\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:17,691] [Preprocessor.java:241] [main] Processing chromosome C25032\r\n", "Processing chromosome C25032\r\n", "INFO [2014-03-08 06:24:17,708] [Preprocessor.java:241] [main] Processing chromosome C25038\r\n", "Processing chromosome C25038\r\n", "INFO [2014-03-08 06:24:17,712] [Preprocessor.java:241] [main] Processing chromosome C25042\r\n", "Processing chromosome C25042\r\n", "INFO [2014-03-08 06:24:17,716] [Preprocessor.java:241] [main] Processing chromosome C25050\r\n", "Processing chromosome C25050\r\n", "INFO [2014-03-08 06:24:17,729] [Preprocessor.java:241] [main] Processing chromosome C25052\r\n", "Processing chromosome C25052\r\n", "INFO [2014-03-08 06:24:17,741] [Preprocessor.java:241] [main] Processing chromosome C25054\r\n", "Processing chromosome C25054\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:17,771] [Preprocessor.java:241] [main] Processing chromosome C25064\r\n", "Processing chromosome C25064\r\n", "INFO [2014-03-08 06:24:17,780] [Preprocessor.java:241] [main] Processing chromosome C25066\r\n", "Processing chromosome C25066\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:17,798] [Preprocessor.java:241] [main] Processing chromosome C25074\r\n", "Processing chromosome C25074\r\n", "INFO [2014-03-08 06:24:17,815] [Preprocessor.java:241] [main] Processing chromosome C25084\r\n", "Processing chromosome C25084\r\n", "INFO [2014-03-08 06:24:17,824] [Preprocessor.java:241] [main] Processing chromosome C25088\r\n", "Processing chromosome C25088\r\n", "INFO [2014-03-08 06:24:17,835] [Preprocessor.java:241] [main] Processing chromosome C25096\r\n", "Processing chromosome C25096\r\n", "INFO [2014-03-08 06:24:17,848] [Preprocessor.java:241] [main] Processing chromosome C25102\r\n", "Processing chromosome C25102\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:17,903] [Preprocessor.java:241] [main] Processing chromosome C25106\r\n", "Processing chromosome C25106\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:18,288] [Preprocessor.java:241] [main] Processing chromosome C25108\r\n", "Processing chromosome C25108\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:18,389] [Preprocessor.java:241] [main] Processing chromosome C25116\r\n", "Processing chromosome C25116\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:18,432] [Preprocessor.java:241] [main] Processing chromosome C25118\r\n", "Processing chromosome C25118\r\n", "INFO [2014-03-08 06:24:18,440] [Preprocessor.java:241] [main] Processing chromosome C25124\r\n", "Processing chromosome C25124\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:18,474] [Preprocessor.java:241] [main] Processing chromosome C25126\r\n", "Processing chromosome C25126\r\n", "INFO [2014-03-08 06:24:18,480] [Preprocessor.java:241] [main] Processing chromosome C25140\r\n", "Processing chromosome C25140\r\n", "INFO [2014-03-08 06:24:18,496] [Preprocessor.java:241] [main] Processing chromosome C25178\r\n", "Processing chromosome C25178\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:18,587] [Preprocessor.java:241] [main] Processing chromosome C25180\r\n", "Processing chromosome C25180\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:18,655] [Preprocessor.java:241] [main] Processing chromosome C25184\r\n", "Processing chromosome C25184\r\n", "INFO [2014-03-08 06:24:18,659] [Preprocessor.java:241] [main] Processing chromosome C25190\r\n", "Processing chromosome C25190\r\n", "INFO [2014-03-08 06:24:18,662] [Preprocessor.java:241] [main] Processing chromosome C25196\r\n", "Processing chromosome C25196\r\n", "INFO [2014-03-08 06:24:18,685] [Preprocessor.java:241] [main] Processing chromosome C25206\r\n", "Processing chromosome C25206\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:18,715] [Preprocessor.java:241] [main] Processing chromosome C25214\r\n", "Processing chromosome C25214\r\n", "INFO [2014-03-08 06:24:18,733] [Preprocessor.java:241] [main] Processing chromosome C25218\r\n", "Processing chromosome C25218\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:18,756] [Preprocessor.java:241] [main] Processing chromosome C25228\r\n", "Processing chromosome C25228\r\n", "INFO [2014-03-08 06:24:18,796] [Preprocessor.java:241] [main] Processing chromosome C25230\r\n", "Processing chromosome C25230\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:18,861] [Preprocessor.java:241] [main] Processing chromosome C25248\r\n", "Processing chromosome C25248\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:18,879] [Preprocessor.java:241] [main] Processing chromosome C25274\r\n", "Processing chromosome C25274\r\n", "INFO [2014-03-08 06:24:18,896] [Preprocessor.java:241] [main] Processing chromosome C25290\r\n", "Processing chromosome C25290\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:18,926] [Preprocessor.java:241] [main] Processing chromosome C25298\r\n", "Processing chromosome C25298\r\n", "INFO [2014-03-08 06:24:18,959] [Preprocessor.java:241] [main] Processing chromosome C25310\r\n", "Processing chromosome C25310\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:19,009] [Preprocessor.java:241] [main] Processing chromosome C25314\r\n", "Processing chromosome C25314\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:19,057] [Preprocessor.java:241] [main] Processing chromosome C25324\r\n", "Processing chromosome C25324\r\n", "INFO [2014-03-08 06:24:19,068] [Preprocessor.java:241] [main] Processing chromosome C25328\r\n", "Processing chromosome C25328\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:19,106] [Preprocessor.java:241] [main] Processing chromosome C2533\r\n", "Processing chromosome C2533\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:19,147] [Preprocessor.java:241] [main] Processing chromosome C25334\r\n", "Processing chromosome C25334\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:19,184] [Preprocessor.java:241] [main] Processing chromosome C25336\r\n", "Processing chromosome C25336\r\n", "INFO [2014-03-08 06:24:19,192] [Preprocessor.java:241] [main] Processing chromosome C25344\r\n", "Processing chromosome C25344\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:19,240] [Preprocessor.java:241] [main] Processing chromosome C25346\r\n", "Processing chromosome C25346\r\n", "INFO [2014-03-08 06:24:19,256] [Preprocessor.java:241] [main] Processing chromosome C25352\r\n", "Processing chromosome C25352\r\n", "INFO [2014-03-08 06:24:19,273] [Preprocessor.java:241] [main] Processing chromosome C25360\r\n", "Processing chromosome C25360\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:19,322] [Preprocessor.java:241] [main] Processing chromosome C25384\r\n", "Processing chromosome C25384\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:19,333] [Preprocessor.java:241] [main] Processing chromosome C25394\r\n", "Processing chromosome C25394\r\n", "INFO [2014-03-08 06:24:19,363] [Preprocessor.java:241] [main] Processing chromosome C25404\r\n", "Processing chromosome C25404\r\n", "INFO [2014-03-08 06:24:19,379] [Preprocessor.java:241] [main] Processing chromosome C2541\r\n", "Processing chromosome C2541\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:19,418] [Preprocessor.java:241] [main] Processing chromosome C25414\r\n", "Processing chromosome C25414\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:19,448] [Preprocessor.java:241] [main] Processing chromosome C25418\r\n", "Processing chromosome C25418\r\n", "INFO [2014-03-08 06:24:19,465] [Preprocessor.java:241] [main] Processing chromosome C25420\r\n", "Processing chromosome C25420\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:19,498] [Preprocessor.java:241] [main] Processing chromosome C25424\r\n", "Processing chromosome C25424\r\n", "INFO [2014-03-08 06:24:19,513] [Preprocessor.java:241] [main] Processing chromosome C2543\r\n", "Processing chromosome C2543\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:19,586] [Preprocessor.java:241] [main] Processing chromosome C25448\r\n", "Processing chromosome C25448\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:19,625] [Preprocessor.java:241] [main] Processing chromosome C2545\r\n", "Processing chromosome C2545\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:19,697] [Preprocessor.java:241] [main] Processing chromosome C25456\r\n", "Processing chromosome C25456\r\n", "INFO [2014-03-08 06:24:19,707] [Preprocessor.java:241] [main] Processing chromosome C25466\r\n", "Processing chromosome C25466\r\n", "INFO [2014-03-08 06:24:19,723] [Preprocessor.java:241] [main] Processing chromosome C25468\r\n", "Processing chromosome C25468\r\n", "INFO [2014-03-08 06:24:19,734] [Preprocessor.java:241] [main] Processing chromosome C25470\r\n", "Processing chromosome C25470\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:19,760] [Preprocessor.java:241] [main] Processing chromosome C25494\r\n", "Processing chromosome C25494\r\n", "INFO [2014-03-08 06:24:19,784] [Preprocessor.java:241] [main] Processing chromosome C25496\r\n", "Processing chromosome C25496\r\n", "INFO [2014-03-08 06:24:19,791] [Preprocessor.java:241] [main] Processing chromosome C25498\r\n", "Processing chromosome C25498\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:19,824] [Preprocessor.java:241] [main] Processing chromosome C25504\r\n", "Processing chromosome C25504\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:19,862] [Preprocessor.java:241] [main] Processing chromosome C25528\r\n", "Processing chromosome C25528\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:19,913] [Preprocessor.java:241] [main] Processing chromosome C25540\r\n", "Processing chromosome C25540\r\n", "INFO [2014-03-08 06:24:19,939] [Preprocessor.java:241] [main] Processing chromosome C25542\r\n", "Processing chromosome C25542\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:19,956] [Preprocessor.java:241] [main] Processing chromosome C25544\r\n", "Processing chromosome C25544\r\n", "INFO [2014-03-08 06:24:19,973] [Preprocessor.java:241] [main] Processing chromosome C25546\r\n", "Processing chromosome C25546\r\n", "INFO [2014-03-08 06:24:20,000] [Preprocessor.java:241] [main] Processing chromosome C25550\r\n", "Processing chromosome C25550\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:20,039] [Preprocessor.java:241] [main] Processing chromosome C25556\r\n", "Processing chromosome C25556\r\n", "INFO [2014-03-08 06:24:20,043] [Preprocessor.java:241] [main] Processing chromosome C25558\r\n", "Processing chromosome C25558\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:20,068] [Preprocessor.java:241] [main] Processing chromosome C25564\r\n", "Processing chromosome C25564\r\n", "INFO [2014-03-08 06:24:20,100] [Preprocessor.java:241] [main] Processing chromosome C25572\r\n", "Processing chromosome C25572\r\n", "INFO [2014-03-08 06:24:20,109] [Preprocessor.java:241] [main] Processing chromosome C25580\r\n", "Processing chromosome C25580\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:20,153] [Preprocessor.java:241] [main] Processing chromosome C25592\r\n", "Processing chromosome C25592\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:20,168] [Preprocessor.java:241] [main] Processing chromosome C25596\r\n", "Processing chromosome C25596\r\n", "INFO [2014-03-08 06:24:20,188] [Preprocessor.java:241] [main] Processing chromosome C25612\r\n", "Processing chromosome C25612\r\n", "INFO [2014-03-08 06:24:20,194] [Preprocessor.java:241] [main] Processing chromosome C25614\r\n", "Processing chromosome C25614\r\n", "INFO [2014-03-08 06:24:20,203] [Preprocessor.java:241] [main] Processing chromosome C25620\r\n", "Processing chromosome C25620\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:20,232] [Preprocessor.java:241] [main] Processing chromosome C25630\r\n", "Processing chromosome C25630\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:20,272] [Preprocessor.java:241] [main] Processing chromosome C25634\r\n", "Processing chromosome C25634\r\n", "INFO [2014-03-08 06:24:20,313] [Preprocessor.java:241] [main] Processing chromosome C25644\r\n", "Processing chromosome C25644\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:20,362] [Preprocessor.java:241] [main] Processing chromosome C25648\r\n", "Processing chromosome C25648\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:20,404] [Preprocessor.java:241] [main] Processing chromosome C25652\r\n", "Processing chromosome C25652\r\n", "INFO [2014-03-08 06:24:20,411] [Preprocessor.java:241] [main] Processing chromosome C25654\r\n", "Processing chromosome C25654\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:20,449] [Preprocessor.java:241] [main] Processing chromosome C25662\r\n", "Processing chromosome C25662\r\n", "INFO [2014-03-08 06:24:20,453] [Preprocessor.java:241] [main] Processing chromosome C25670\r\n", "Processing chromosome C25670\r\n", "INFO [2014-03-08 06:24:20,461] [Preprocessor.java:241] [main] Processing chromosome C25676\r\n", "Processing chromosome C25676\r\n", "INFO [2014-03-08 06:24:20,478] [Preprocessor.java:241] [main] Processing chromosome C25678\r\n", "Processing chromosome C25678\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:20,501] [Preprocessor.java:241] [main] Processing chromosome C25698\r\n", "Processing chromosome C25698\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:20,556] [Preprocessor.java:241] [main] Processing chromosome C25706\r\n", "Processing chromosome C25706\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:20,597] [Preprocessor.java:241] [main] Processing chromosome C25708\r\n", "Processing chromosome C25708\r\n", "INFO [2014-03-08 06:24:20,622] [Preprocessor.java:241] [main] Processing chromosome C25722\r\n", "Processing chromosome C25722\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:20,652] [Preprocessor.java:241] [main] Processing chromosome C25730\r\n", "Processing chromosome C25730\r\n", "INFO [2014-03-08 06:24:20,658] [Preprocessor.java:241] [main] Processing chromosome C25734\r\n", "Processing chromosome C25734\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:20,692] [Preprocessor.java:241] [main] Processing chromosome C25740\r\n", "Processing chromosome C25740\r\n", "INFO [2014-03-08 06:24:20,727] [Preprocessor.java:241] [main] Processing chromosome C25744\r\n", "Processing chromosome C25744\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:20,770] [Preprocessor.java:241] [main] Processing chromosome C25748\r\n", "Processing chromosome C25748\r\n", "INFO [2014-03-08 06:24:20,777] [Preprocessor.java:241] [main] Processing chromosome C25752\r\n", "Processing chromosome C25752\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:20,797] [Preprocessor.java:241] [main] Processing chromosome C25756\r\n", "Processing chromosome C25756\r\n", "INFO [2014-03-08 06:24:20,823] [Preprocessor.java:241] [main] Processing chromosome C25758\r\n", "Processing chromosome C25758\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:20,855] [Preprocessor.java:241] [main] Processing chromosome C25762\r\n", "Processing chromosome C25762\r\n", "INFO [2014-03-08 06:24:20,891] [Preprocessor.java:241] [main] Processing chromosome C25766\r\n", "Processing chromosome C25766\r\n", "INFO [2014-03-08 06:24:20,896] [Preprocessor.java:241] [main] Processing chromosome C25778\r\n", "Processing chromosome C25778\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:20,907] [Preprocessor.java:241] [main] Processing chromosome C25780\r\n", "Processing chromosome C25780\r\n", "INFO [2014-03-08 06:24:20,912] [Preprocessor.java:241] [main] Processing chromosome C25792\r\n", "Processing chromosome C25792\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:20,957] [Preprocessor.java:241] [main] Processing chromosome C25804\r\n", "Processing chromosome C25804\r\n", "INFO [2014-03-08 06:24:21,002] [Preprocessor.java:241] [main] Processing chromosome C25818\r\n", "Processing chromosome C25818\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:21,048] [Preprocessor.java:241] [main] Processing chromosome C25820\r\n", "Processing chromosome C25820\r\n", "INFO [2014-03-08 06:24:21,058] [Preprocessor.java:241] [main] Processing chromosome C25822\r\n", "Processing chromosome C25822\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:21,092] [Preprocessor.java:241] [main] Processing chromosome C25826\r\n", "Processing chromosome C25826\r\n", "INFO [2014-03-08 06:24:21,109] [Preprocessor.java:241] [main] Processing chromosome C25828\r\n", "Processing chromosome C25828\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:21,134] [Preprocessor.java:241] [main] Processing chromosome C2583\r\n", "Processing chromosome C2583\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:21,177] [Preprocessor.java:241] [main] Processing chromosome C25834\r\n", "Processing chromosome C25834\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:21,250] [Preprocessor.java:241] [main] Processing chromosome C25838\r\n", "Processing chromosome C25838\r\n", "INFO [2014-03-08 06:24:21,260] [Preprocessor.java:241] [main] Processing chromosome C25858\r\n", "Processing chromosome C25858\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:21,280] [Preprocessor.java:241] [main] Processing chromosome C25860\r\n", "Processing chromosome C25860\r\n", "INFO [2014-03-08 06:24:21,283] [Preprocessor.java:241] [main] Processing chromosome C25864\r\n", "Processing chromosome C25864\r\n", "INFO [2014-03-08 06:24:21,313] [Preprocessor.java:241] [main] Processing chromosome C25866\r\n", "Processing chromosome C25866\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:21,337] [Preprocessor.java:241] [main] Processing chromosome C25876\r\n", "Processing chromosome C25876\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:21,394] [Preprocessor.java:241] [main] Processing chromosome C25882\r\n", "Processing chromosome C25882\r\n", "INFO [2014-03-08 06:24:21,398] [Preprocessor.java:241] [main] Processing chromosome C25896\r\n", "Processing chromosome C25896\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:21,445] [Preprocessor.java:241] [main] Processing chromosome C25898\r\n", "Processing chromosome C25898\r\n", "INFO [2014-03-08 06:24:21,478] [Preprocessor.java:241] [main] Processing chromosome C25900\r\n", "Processing chromosome C25900\r\n", "INFO [2014-03-08 06:24:21,484] [Preprocessor.java:241] [main] Processing chromosome C25912\r\n", "Processing chromosome C25912\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:21,530] [Preprocessor.java:241] [main] Processing chromosome C25928\r\n", "Processing chromosome C25928\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:21,578] [Preprocessor.java:241] [main] Processing chromosome C25930\r\n", "Processing chromosome C25930\r\n", "INFO [2014-03-08 06:24:21,590] [Preprocessor.java:241] [main] Processing chromosome C25932\r\n", "Processing chromosome C25932\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:21,642] [Preprocessor.java:241] [main] Processing chromosome C25940\r\n", "Processing chromosome C25940\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:21,702] [Preprocessor.java:241] [main] Processing chromosome C25946\r\n", "Processing chromosome C25946\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:21,717] [Preprocessor.java:241] [main] Processing chromosome C25954\r\n", "Processing chromosome C25954\r\n", "INFO [2014-03-08 06:24:21,742] [Preprocessor.java:241] [main] Processing chromosome C25962\r\n", "Processing chromosome C25962\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:21,766] [Preprocessor.java:241] [main] Processing chromosome C25966\r\n", "Processing chromosome C25966\r\n", "INFO [2014-03-08 06:24:21,791] [Preprocessor.java:241] [main] Processing chromosome C25968\r\n", "Processing chromosome C25968\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:21,817] [Preprocessor.java:241] [main] Processing chromosome C25970\r\n", "Processing chromosome C25970\r\n", "INFO [2014-03-08 06:24:21,836] [Preprocessor.java:241] [main] Processing chromosome C25972\r\n", "Processing chromosome C25972\r\n", "INFO [2014-03-08 06:24:21,851] [Preprocessor.java:241] [main] Processing chromosome C25980\r\n", "Processing chromosome C25980\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:21,915] [Preprocessor.java:241] [main] Processing chromosome C25990\r\n", "Processing chromosome C25990\r\n", "INFO [2014-03-08 06:24:21,950] [Preprocessor.java:241] [main] Processing chromosome C25998\r\n", "Processing chromosome C25998\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:21,996] [Preprocessor.java:241] [main] Processing chromosome C26002\r\n", "Processing chromosome C26002\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:22,026] [Preprocessor.java:241] [main] Processing chromosome C26004\r\n", "Processing chromosome C26004\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:22,073] [Preprocessor.java:241] [main] Processing chromosome C26010\r\n", "Processing chromosome C26010\r\n", "INFO [2014-03-08 06:24:22,083] [Preprocessor.java:241] [main] Processing chromosome C26018\r\n", "Processing chromosome C26018\r\n", "INFO [2014-03-08 06:24:22,100] [Preprocessor.java:241] [main] Processing chromosome C26032\r\n", "Processing chromosome C26032\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:22,123] [Preprocessor.java:241] [main] Processing chromosome C26040\r\n", "Processing chromosome C26040\r\n", "INFO [2014-03-08 06:24:22,154] [Preprocessor.java:241] [main] Processing chromosome C26054\r\n", "Processing chromosome C26054\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:22,177] [Preprocessor.java:241] [main] Processing chromosome C26066\r\n", "Processing chromosome C26066\r\n", "INFO [2014-03-08 06:24:22,193] [Preprocessor.java:241] [main] Processing chromosome C26070\r\n", "Processing chromosome C26070\r\n", "INFO [2014-03-08 06:24:22,203] [Preprocessor.java:241] [main] Processing chromosome C26078\r\n", "Processing chromosome C26078\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:22,243] [Preprocessor.java:241] [main] Processing chromosome C26082\r\n", "Processing chromosome C26082\r\n", "INFO [2014-03-08 06:24:22,276] [Preprocessor.java:241] [main] Processing chromosome C26084\r\n", "Processing chromosome C26084\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:22,313] [Preprocessor.java:241] [main] Processing chromosome C26088\r\n", "Processing chromosome C26088\r\n", "INFO [2014-03-08 06:24:22,322] [Preprocessor.java:241] [main] Processing chromosome C26094\r\n", "Processing chromosome C26094\r\n", "INFO [2014-03-08 06:24:22,326] [Preprocessor.java:241] [main] Processing chromosome C26096\r\n", "Processing chromosome C26096\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:22,335] [Preprocessor.java:241] [main] Processing chromosome C26102\r\n", "Processing chromosome C26102\r\n", "INFO [2014-03-08 06:24:22,381] [Preprocessor.java:241] [main] Processing chromosome C26108\r\n", "Processing chromosome C26108\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:22,412] [Preprocessor.java:241] [main] Processing chromosome C26118\r\n", "Processing chromosome C26118\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:22,449] [Preprocessor.java:241] [main] Processing chromosome C26122\r\n", "Processing chromosome C26122\r\n", "INFO [2014-03-08 06:24:22,452] [Preprocessor.java:241] [main] Processing chromosome C26128\r\n", "Processing chromosome C26128\r\n", "INFO [2014-03-08 06:24:22,471] [Preprocessor.java:241] [main] Processing chromosome C26134\r\n", "Processing chromosome C26134\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:22,519] [Preprocessor.java:241] [main] Processing chromosome C26140\r\n", "Processing chromosome C26140\r\n", "INFO [2014-03-08 06:24:22,534] [Preprocessor.java:241] [main] Processing chromosome C26148\r\n", "Processing chromosome C26148\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:22,576] [Preprocessor.java:241] [main] Processing chromosome C26150\r\n", "Processing chromosome C26150\r\n", "INFO [2014-03-08 06:24:22,587] [Preprocessor.java:241] [main] Processing chromosome C26152\r\n", "Processing chromosome C26152\r\n", "INFO [2014-03-08 06:24:22,591] [Preprocessor.java:241] [main] Processing chromosome C26154\r\n", "Processing chromosome C26154\r\n", "INFO [2014-03-08 06:24:22,595] [Preprocessor.java:241] [main] Processing chromosome C26156\r\n", "Processing chromosome C26156\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:22,616] [Preprocessor.java:241] [main] Processing chromosome C26168\r\n", "Processing chromosome C26168\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:22,668] [Preprocessor.java:241] [main] Processing chromosome C26170\r\n", "Processing chromosome C26170\r\n", "INFO [2014-03-08 06:24:22,675] [Preprocessor.java:241] [main] Processing chromosome C26174\r\n", "Processing chromosome C26174\r\n", "INFO [2014-03-08 06:24:22,678] [Preprocessor.java:241] [main] Processing chromosome C26180\r\n", "Processing chromosome C26180\r\n", "INFO [2014-03-08 06:24:22,690] [Preprocessor.java:241] [main] Processing chromosome C26184\r\n", "Processing chromosome C26184\r\n", "INFO [2014-03-08 06:24:22,709] [Preprocessor.java:241] [main] Processing chromosome C26190\r\n", "Processing chromosome C26190\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:22,718] [Preprocessor.java:241] [main] Processing chromosome C26192\r\n", "Processing chromosome C26192\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:22,772] [Preprocessor.java:241] [main] Processing chromosome C26196\r\n", "Processing chromosome C26196\r\n", "INFO [2014-03-08 06:24:22,791] [Preprocessor.java:241] [main] Processing chromosome C26198\r\n", "Processing chromosome C26198\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:22,821] [Preprocessor.java:241] [main] Processing chromosome C26204\r\n", "Processing chromosome C26204\r\n", "INFO [2014-03-08 06:24:22,826] [Preprocessor.java:241] [main] Processing chromosome C26206\r\n", "Processing chromosome C26206\r\n", "INFO [2014-03-08 06:24:22,845] [Preprocessor.java:241] [main] Processing chromosome C26212\r\n", "Processing chromosome C26212\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:22,880] [Preprocessor.java:241] [main] Processing chromosome C26226\r\n", "Processing chromosome C26226\r\n", "INFO [2014-03-08 06:24:22,891] [Preprocessor.java:241] [main] Processing chromosome C26228\r\n", "Processing chromosome C26228\r\n", "INFO [2014-03-08 06:24:22,907] [Preprocessor.java:241] [main] Processing chromosome C26230\r\n", "Processing chromosome C26230\r\n", "INFO [2014-03-08 06:24:22,926] [Preprocessor.java:241] [main] Processing chromosome C26236\r\n", "Processing chromosome C26236\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:22,938] [Preprocessor.java:241] [main] Processing chromosome C26238\r\n", "Processing chromosome C26238\r\n", "INFO [2014-03-08 06:24:22,948] [Preprocessor.java:241] [main] Processing chromosome C26240\r\n", "Processing chromosome C26240\r\n", "INFO [2014-03-08 06:24:22,972] [Preprocessor.java:241] [main] Processing chromosome C26244\r\n", "Processing chromosome C26244\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:23,014] [Preprocessor.java:241] [main] Processing chromosome C26246\r\n", "Processing chromosome C26246\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:23,036] [Preprocessor.java:241] [main] Processing chromosome C26256\r\n", "Processing chromosome C26256\r\n", "INFO [2014-03-08 06:24:23,047] [Preprocessor.java:241] [main] Processing chromosome C26262\r\n", "Processing chromosome C26262\r\n", "INFO [2014-03-08 06:24:23,052] [Preprocessor.java:241] [main] Processing chromosome C26268\r\n", "Processing chromosome C26268\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:23,103] [Preprocessor.java:241] [main] Processing chromosome C26276\r\n", "Processing chromosome C26276\r\n", "INFO [2014-03-08 06:24:23,132] [Preprocessor.java:241] [main] Processing chromosome C26278\r\n", "Processing chromosome C26278\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:23,137] [Preprocessor.java:241] [main] Processing chromosome C26292\r\n", "Processing chromosome C26292\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:23,194] [Preprocessor.java:241] [main] Processing chromosome C26302\r\n", "Processing chromosome C26302\r\n", "INFO [2014-03-08 06:24:23,199] [Preprocessor.java:241] [main] Processing chromosome C26306\r\n", "Processing chromosome C26306\r\n", "INFO [2014-03-08 06:24:23,236] [Preprocessor.java:241] [main] Processing chromosome C26312\r\n", "Processing chromosome C26312\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:23,252] [Preprocessor.java:241] [main] Processing chromosome C26318\r\n", "Processing chromosome C26318\r\n", "INFO [2014-03-08 06:24:23,275] [Preprocessor.java:241] [main] Processing chromosome C26320\r\n", "Processing chromosome C26320\r\n", "INFO [2014-03-08 06:24:23,291] [Preprocessor.java:241] [main] Processing chromosome C26336\r\n", "Processing chromosome C26336\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:23,306] [Preprocessor.java:241] [main] Processing chromosome C26338\r\n", "Processing chromosome C26338\r\n", "INFO [2014-03-08 06:24:23,311] [Preprocessor.java:241] [main] Processing chromosome C26342\r\n", "Processing chromosome C26342\r\n", "INFO [2014-03-08 06:24:23,336] [Preprocessor.java:241] [main] Processing chromosome C26344\r\n", "Processing chromosome C26344\r\n", "INFO [2014-03-08 06:24:23,340] [Preprocessor.java:241] [main] Processing chromosome C26352\r\n", "Processing chromosome C26352\r\n", "INFO [2014-03-08 06:24:23,343] [Preprocessor.java:241] [main] Processing chromosome C26354\r\n", "Processing chromosome C26354\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:23,363] [Preprocessor.java:241] [main] Processing chromosome C26356\r\n", "Processing chromosome C26356\r\n", "INFO [2014-03-08 06:24:23,366] [Preprocessor.java:241] [main] Processing chromosome C26370\r\n", "Processing chromosome C26370\r\n", "INFO [2014-03-08 06:24:23,374] [Preprocessor.java:241] [main] Processing chromosome C26372\r\n", "Processing chromosome C26372\r\n", "INFO [2014-03-08 06:24:23,381] [Preprocessor.java:241] [main] Processing chromosome C26374\r\n", "Processing chromosome C26374\r\n", "INFO [2014-03-08 06:24:23,391] [Preprocessor.java:241] [main] Processing chromosome C26384\r\n", "Processing chromosome C26384\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:23,409] [Preprocessor.java:241] [main] Processing chromosome C26390\r\n", "Processing chromosome C26390\r\n", "INFO [2014-03-08 06:24:23,450] [Preprocessor.java:241] [main] Processing chromosome C26394\r\n", "Processing chromosome C26394\r\n", "INFO [2014-03-08 06:24:23,456] [Preprocessor.java:241] [main] Processing chromosome C26402\r\n", "Processing chromosome C26402\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:23,478] [Preprocessor.java:241] [main] Processing chromosome C26416\r\n", "Processing chromosome C26416\r\n", "INFO [2014-03-08 06:24:23,489] [Preprocessor.java:241] [main] Processing chromosome C26422\r\n", "Processing chromosome C26422\r\n", "INFO [2014-03-08 06:24:23,505] [Preprocessor.java:241] [main] Processing chromosome C26426\r\n", "Processing chromosome C26426\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:23,519] [Preprocessor.java:241] [main] Processing chromosome C26430\r\n", "Processing chromosome C26430\r\n", "INFO [2014-03-08 06:24:23,537] [Preprocessor.java:241] [main] Processing chromosome C26440\r\n", "Processing chromosome C26440\r\n", "INFO [2014-03-08 06:24:23,551] [Preprocessor.java:241] [main] Processing chromosome C26448\r\n", "Processing chromosome C26448\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:23,570] [Preprocessor.java:241] [main] Processing chromosome C26452\r\n", "Processing chromosome C26452\r\n", "INFO [2014-03-08 06:24:23,594] [Preprocessor.java:241] [main] Processing chromosome C26454\r\n", "Processing chromosome C26454\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:23,649] [Preprocessor.java:241] [main] Processing chromosome C26458\r\n", "Processing chromosome C26458\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:23,668] [Preprocessor.java:241] [main] Processing chromosome C26460\r\n", "Processing chromosome C26460\r\n", "INFO [2014-03-08 06:24:23,687] [Preprocessor.java:241] [main] Processing chromosome C26466\r\n", "Processing chromosome C26466\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:23,719] [Preprocessor.java:241] [main] Processing chromosome C26468\r\n", "Processing chromosome C26468\r\n", "INFO [2014-03-08 06:24:23,722] [Preprocessor.java:241] [main] Processing chromosome C26472\r\n", "Processing chromosome C26472\r\n", "INFO [2014-03-08 06:24:23,735] [Preprocessor.java:241] [main] Processing chromosome C26474\r\n", "Processing chromosome C26474\r\n", "INFO [2014-03-08 06:24:23,748] [Preprocessor.java:241] [main] Processing chromosome C26482\r\n", "Processing chromosome C26482\r\n", "INFO [2014-03-08 06:24:23,760] [Preprocessor.java:241] [main] Processing chromosome C26486\r\n", "Processing chromosome C26486\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:23,789] [Preprocessor.java:241] [main] Processing chromosome C26492\r\n", "Processing chromosome C26492\r\n", "INFO [2014-03-08 06:24:23,812] [Preprocessor.java:241] [main] Processing chromosome C26500\r\n", "Processing chromosome C26500\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:23,849] [Preprocessor.java:241] [main] Processing chromosome C26506\r\n", "Processing chromosome C26506\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:23,913] [Preprocessor.java:241] [main] Processing chromosome C26508\r\n", "Processing chromosome C26508\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:23,965] [Preprocessor.java:241] [main] Processing chromosome C26516\r\n", "Processing chromosome C26516\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:24,023] [Preprocessor.java:241] [main] Processing chromosome C26518\r\n", "Processing chromosome C26518\r\n", "INFO [2014-03-08 06:24:24,033] [Preprocessor.java:241] [main] Processing chromosome C26522\r\n", "Processing chromosome C26522\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:24,081] [Preprocessor.java:241] [main] Processing chromosome C26526\r\n", "Processing chromosome C26526\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:24,112] [Preprocessor.java:241] [main] Processing chromosome C26532\r\n", "Processing chromosome C26532\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:24,144] [Preprocessor.java:241] [main] Processing chromosome C26534\r\n", "Processing chromosome C26534\r\n", "INFO [2014-03-08 06:24:24,182] [Preprocessor.java:241] [main] Processing chromosome C26536\r\n", "Processing chromosome C26536\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:24,273] [Preprocessor.java:241] [main] Processing chromosome C26550\r\n", "Processing chromosome C26550\r\n", "INFO [2014-03-08 06:24:24,288] [Preprocessor.java:241] [main] Processing chromosome C26552\r\n", "Processing chromosome C26552\r\n", "INFO [2014-03-08 06:24:24,295] [Preprocessor.java:241] [main] Processing chromosome C26556\r\n", "Processing chromosome C26556\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:24,301] [Preprocessor.java:241] [main] Processing chromosome C26562\r\n", "Processing chromosome C26562\r\n", "INFO [2014-03-08 06:24:24,336] [Preprocessor.java:241] [main] Processing chromosome C26566\r\n", "Processing chromosome C26566\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:24,359] [Preprocessor.java:241] [main] Processing chromosome C26568\r\n", "Processing chromosome C26568\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:24,401] [Preprocessor.java:241] [main] Processing chromosome C26570\r\n", "Processing chromosome C26570\r\n", "INFO [2014-03-08 06:24:24,420] [Preprocessor.java:241] [main] Processing chromosome C26574\r\n", "Processing chromosome C26574\r\n", "INFO [2014-03-08 06:24:24,424] [Preprocessor.java:241] [main] Processing chromosome C26578\r\n", "Processing chromosome C26578\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:24,475] [Preprocessor.java:241] [main] Processing chromosome C26582\r\n", "Processing chromosome C26582\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:24,519] [Preprocessor.java:241] [main] Processing chromosome C26584\r\n", "Processing chromosome C26584\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:24,588] [Preprocessor.java:241] [main] Processing chromosome C26602\r\n", "Processing chromosome C26602\r\n", "INFO [2014-03-08 06:24:24,608] [Preprocessor.java:241] [main] Processing chromosome C26606\r\n", "Processing chromosome C26606\r\n", "INFO [2014-03-08 06:24:24,612] [Preprocessor.java:241] [main] Processing chromosome C26612\r\n", "Processing chromosome C26612\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:24,639] [Preprocessor.java:241] [main] Processing chromosome C26614\r\n", "Processing chromosome C26614\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:24,670] [Preprocessor.java:241] [main] Processing chromosome C26620\r\n", "Processing chromosome C26620\r\n", "INFO [2014-03-08 06:24:24,675] [Preprocessor.java:241] [main] Processing chromosome C26624\r\n", "Processing chromosome C26624\r\n", "INFO [2014-03-08 06:24:24,692] [Preprocessor.java:241] [main] Processing chromosome C26628\r\n", "Processing chromosome C26628\r\n", "INFO [2014-03-08 06:24:24,700] [Preprocessor.java:241] [main] Processing chromosome C26640\r\n", "Processing chromosome C26640\r\n", "INFO [2014-03-08 06:24:24,718] [Preprocessor.java:241] [main] Processing chromosome C26646\r\n", "Processing chromosome C26646\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:24,734] [Preprocessor.java:241] [main] Processing chromosome C26654\r\n", "Processing chromosome C26654\r\n", "INFO [2014-03-08 06:24:24,772] [Preprocessor.java:241] [main] Processing chromosome C26660\r\n", "Processing chromosome C26660\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:24,778] [Preprocessor.java:241] [main] Processing chromosome C26666\r\n", "Processing chromosome C26666\r\n", "INFO [2014-03-08 06:24:24,793] [Preprocessor.java:241] [main] Processing chromosome C26674\r\n", "Processing chromosome C26674\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:24,839] [Preprocessor.java:241] [main] Processing chromosome C26684\r\n", "Processing chromosome C26684\r\n", "INFO [2014-03-08 06:24:24,868] [Preprocessor.java:241] [main] Processing chromosome C26688\r\n", "Processing chromosome C26688\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:24,896] [Preprocessor.java:241] [main] Processing chromosome C26692\r\n", "Processing chromosome C26692\r\n", "INFO [2014-03-08 06:24:24,909] [Preprocessor.java:241] [main] Processing chromosome C26708\r\n", "Processing chromosome C26708\r\n", "INFO [2014-03-08 06:24:24,923] [Preprocessor.java:241] [main] Processing chromosome C26712\r\n", "Processing chromosome C26712\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:24,954] [Preprocessor.java:241] [main] Processing chromosome C26722\r\n", "Processing chromosome C26722\r\n", "INFO [2014-03-08 06:24:24,970] [Preprocessor.java:241] [main] Processing chromosome C26726\r\n", "Processing chromosome C26726\r\n", "INFO [2014-03-08 06:24:24,983] [Preprocessor.java:241] [main] Processing chromosome C26728\r\n", "Processing chromosome C26728\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:24,996] [Preprocessor.java:241] [main] Processing chromosome C26738\r\n", "Processing chromosome C26738\r\n", "INFO [2014-03-08 06:24:25,024] [Preprocessor.java:241] [main] Processing chromosome C26740\r\n", "Processing chromosome C26740\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:25,058] [Preprocessor.java:241] [main] Processing chromosome C26742\r\n", "Processing chromosome C26742\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:25,102] [Preprocessor.java:241] [main] Processing chromosome C26762\r\n", "Processing chromosome C26762\r\n", "INFO [2014-03-08 06:24:25,123] [Preprocessor.java:241] [main] Processing chromosome C26774\r\n", "Processing chromosome C26774\r\n", "INFO [2014-03-08 06:24:25,127] [Preprocessor.java:241] [main] Processing chromosome C26784\r\n", "Processing chromosome C26784\r\n", "INFO [2014-03-08 06:24:25,129] [Preprocessor.java:241] [main] Processing chromosome C26812\r\n", "Processing chromosome C26812\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:25,173] [Preprocessor.java:241] [main] Processing chromosome C26820\r\n", "Processing chromosome C26820\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:25,229] [Preprocessor.java:241] [main] Processing chromosome C26824\r\n", "Processing chromosome C26824\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:25,257] [Preprocessor.java:241] [main] Processing chromosome C26828\r\n", "Processing chromosome C26828\r\n", "INFO [2014-03-08 06:24:25,268] [Preprocessor.java:241] [main] Processing chromosome C26838\r\n", "Processing chromosome C26838\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:25,302] [Preprocessor.java:241] [main] Processing chromosome C26844\r\n", "Processing chromosome C26844\r\n", "INFO [2014-03-08 06:24:25,341] [Preprocessor.java:241] [main] Processing chromosome C26852\r\n", "Processing chromosome C26852\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:25,355] [Preprocessor.java:241] [main] Processing chromosome C26862\r\n", "Processing chromosome C26862\r\n", "INFO [2014-03-08 06:24:25,380] [Preprocessor.java:241] [main] Processing chromosome C26866\r\n", "Processing chromosome C26866\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:25,414] [Preprocessor.java:241] [main] Processing chromosome C26872\r\n", "Processing chromosome C26872\r\n", "INFO [2014-03-08 06:24:25,435] [Preprocessor.java:241] [main] Processing chromosome C26878\r\n", "Processing chromosome C26878\r\n", "INFO [2014-03-08 06:24:25,442] [Preprocessor.java:241] [main] Processing chromosome C26888\r\n", "Processing chromosome C26888\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:25,459] [Preprocessor.java:241] [main] Processing chromosome C26890\r\n", "Processing chromosome C26890\r\n", "INFO [2014-03-08 06:24:25,486] [Preprocessor.java:241] [main] Processing chromosome C26900\r\n", "Processing chromosome C26900\r\n", "INFO [2014-03-08 06:24:25,493] [Preprocessor.java:241] [main] Processing chromosome C26918\r\n", "Processing chromosome C26918\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:25,507] [Preprocessor.java:241] [main] Processing chromosome C26920\r\n", "Processing chromosome C26920\r\n", "INFO [2014-03-08 06:24:25,516] [Preprocessor.java:241] [main] Processing chromosome C26932\r\n", "Processing chromosome C26932\r\n", "INFO [2014-03-08 06:24:25,539] [Preprocessor.java:241] [main] Processing chromosome C26934\r\n", "Processing chromosome C26934\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:25,563] [Preprocessor.java:241] [main] Processing chromosome C26936\r\n", "Processing chromosome C26936\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:25,650] [Preprocessor.java:241] [main] Processing chromosome C26938\r\n", "Processing chromosome C26938\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:25,714] [Preprocessor.java:241] [main] Processing chromosome C26942\r\n", "Processing chromosome C26942\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:25,771] [Preprocessor.java:241] [main] Processing chromosome C26948\r\n", "Processing chromosome C26948\r\n", "INFO [2014-03-08 06:24:25,795] [Preprocessor.java:241] [main] Processing chromosome C26958\r\n", "Processing chromosome C26958\r\n", "INFO [2014-03-08 06:24:25,804] [Preprocessor.java:241] [main] Processing chromosome C26960\r\n", "Processing chromosome C26960\r\n", "INFO [2014-03-08 06:24:25,815] [Preprocessor.java:241] [main] Processing chromosome C26966\r\n", "Processing chromosome C26966\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:25,906] [Preprocessor.java:241] [main] Processing chromosome C26976\r\n", "Processing chromosome C26976\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:25,944] [Preprocessor.java:241] [main] Processing chromosome C26978\r\n", "Processing chromosome C26978\r\n", "INFO [2014-03-08 06:24:25,955] [Preprocessor.java:241] [main] Processing chromosome C26982\r\n", "Processing chromosome C26982\r\n", "INFO [2014-03-08 06:24:25,975] [Preprocessor.java:241] [main] Processing chromosome C26986\r\n", "Processing chromosome C26986\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:25,978] [Preprocessor.java:241] [main] Processing chromosome C26992\r\n", "Processing chromosome C26992\r\n", "INFO [2014-03-08 06:24:26,003] [Preprocessor.java:241] [main] Processing chromosome C26998\r\n", "Processing chromosome C26998\r\n", "INFO [2014-03-08 06:24:26,009] [Preprocessor.java:241] [main] Processing chromosome C27\r\n", "Processing chromosome C27\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:26,048] [Preprocessor.java:241] [main] Processing chromosome C2701\r\n", "Processing chromosome C2701\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:26,111] [Preprocessor.java:241] [main] Processing chromosome C27016\r\n", "Processing chromosome C27016\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:26,190] [Preprocessor.java:241] [main] Processing chromosome C27020\r\n", "Processing chromosome C27020\r\n", "INFO [2014-03-08 06:24:26,211] [Preprocessor.java:241] [main] Processing chromosome C27026\r\n", "Processing chromosome C27026\r\n", "INFO [2014-03-08 06:24:26,230] [Preprocessor.java:241] [main] Processing chromosome C27038\r\n", "Processing chromosome C27038\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:26,244] [Preprocessor.java:241] [main] Processing chromosome C27052\r\n", "Processing chromosome C27052\r\n", "INFO [2014-03-08 06:24:26,247] [Preprocessor.java:241] [main] Processing chromosome C27054\r\n", "Processing chromosome C27054\r\n", "INFO [2014-03-08 06:24:26,258] [Preprocessor.java:241] [main] Processing chromosome C27058\r\n", "Processing chromosome C27058\r\n", "INFO [2014-03-08 06:24:26,261] [Preprocessor.java:241] [main] Processing chromosome C27066\r\n", "Processing chromosome C27066\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:26,290] [Preprocessor.java:241] [main] Processing chromosome C27086\r\n", "Processing chromosome C27086\r\n", "INFO [2014-03-08 06:24:26,302] [Preprocessor.java:241] [main] Processing chromosome C27092\r\n", "Processing chromosome C27092\r\n", "INFO [2014-03-08 06:24:26,311] [Preprocessor.java:241] [main] Processing chromosome C27100\r\n", "Processing chromosome C27100\r\n", "INFO [2014-03-08 06:24:26,318] [Preprocessor.java:241] [main] Processing chromosome C27102\r\n", "Processing chromosome C27102\r\n", "INFO [2014-03-08 06:24:26,321] [Preprocessor.java:241] [main] Processing chromosome C27106\r\n", "Processing chromosome C27106\r\n", "INFO [2014-03-08 06:24:26,336] [Preprocessor.java:241] [main] Processing chromosome C27116\r\n", "Processing chromosome C27116\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:26,363] [Preprocessor.java:241] [main] Processing chromosome C27118\r\n", "Processing chromosome C27118\r\n", "INFO [2014-03-08 06:24:26,381] [Preprocessor.java:241] [main] Processing chromosome C27132\r\n", "Processing chromosome C27132\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:26,400] [Preprocessor.java:241] [main] Processing chromosome C27154\r\n", "Processing chromosome C27154\r\n", "INFO [2014-03-08 06:24:26,415] [Preprocessor.java:241] [main] Processing chromosome C27158\r\n", "Processing chromosome C27158\r\n", "INFO [2014-03-08 06:24:26,425] [Preprocessor.java:241] [main] Processing chromosome C27160\r\n", "Processing chromosome C27160\r\n", "INFO [2014-03-08 06:24:26,438] [Preprocessor.java:241] [main] Processing chromosome C27162\r\n", "Processing chromosome C27162\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:26,466] [Preprocessor.java:241] [main] Processing chromosome C27168\r\n", "Processing chromosome C27168\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:26,510] [Preprocessor.java:241] [main] Processing chromosome C27176\r\n", "Processing chromosome C27176\r\n", "INFO [2014-03-08 06:24:26,535] [Preprocessor.java:241] [main] Processing chromosome C27178\r\n", "Processing chromosome C27178\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:26,554] [Preprocessor.java:241] [main] Processing chromosome C27196\r\n", "Processing chromosome C27196\r\n", "INFO [2014-03-08 06:24:26,562] [Preprocessor.java:241] [main] Processing chromosome C27210\r\n", "Processing chromosome C27210\r\n", "INFO [2014-03-08 06:24:26,579] [Preprocessor.java:241] [main] Processing chromosome C27218\r\n", "Processing chromosome C27218\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:26,618] [Preprocessor.java:241] [main] Processing chromosome C27230\r\n", "Processing chromosome C27230\r\n", "INFO [2014-03-08 06:24:26,638] [Preprocessor.java:241] [main] Processing chromosome C27242\r\n", "Processing chromosome C27242\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:26,672] [Preprocessor.java:241] [main] Processing chromosome C27244\r\n", "Processing chromosome C27244\r\n", "INFO [2014-03-08 06:24:26,691] [Preprocessor.java:241] [main] Processing chromosome C27258\r\n", "Processing chromosome C27258\r\n", "INFO [2014-03-08 06:24:26,696] [Preprocessor.java:241] [main] Processing chromosome C27268\r\n", "Processing chromosome C27268\r\n", "INFO [2014-03-08 06:24:26,706] [Preprocessor.java:241] [main] Processing chromosome C2727\r\n", "Processing chromosome C2727\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:26,744] [Preprocessor.java:241] [main] Processing chromosome C27272\r\n", "Processing chromosome C27272\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:26,772] [Preprocessor.java:241] [main] Processing chromosome C27276\r\n", "Processing chromosome C27276\r\n", "INFO [2014-03-08 06:24:26,803] [Preprocessor.java:241] [main] Processing chromosome C27282\r\n", "Processing chromosome C27282\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:26,821] [Preprocessor.java:241] [main] Processing chromosome C27284\r\n", "Processing chromosome C27284\r\n", "INFO [2014-03-08 06:24:26,849] [Preprocessor.java:241] [main] Processing chromosome C27296\r\n", "Processing chromosome C27296\r\n", "INFO [2014-03-08 06:24:26,858] [Preprocessor.java:241] [main] Processing chromosome C27304\r\n", "Processing chromosome C27304\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:26,871] [Preprocessor.java:241] [main] Processing chromosome C27310\r\n", "Processing chromosome C27310\r\n", "INFO [2014-03-08 06:24:26,896] [Preprocessor.java:241] [main] Processing chromosome C27314\r\n", "Processing chromosome C27314\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:26,918] [Preprocessor.java:241] [main] Processing chromosome C27320\r\n", "Processing chromosome C27320\r\n", "INFO [2014-03-08 06:24:26,927] [Preprocessor.java:241] [main] Processing chromosome C27342\r\n", "Processing chromosome C27342\r\n", "INFO [2014-03-08 06:24:26,943] [Preprocessor.java:241] [main] Processing chromosome C27356\r\n", "Processing chromosome C27356\r\n", "INFO [2014-03-08 06:24:26,959] [Preprocessor.java:241] [main] Processing chromosome C27358\r\n", "Processing chromosome C27358\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:26,966] [Preprocessor.java:241] [main] Processing chromosome C27360\r\n", "Processing chromosome C27360\r\n", "INFO [2014-03-08 06:24:26,996] [Preprocessor.java:241] [main] Processing chromosome C27364\r\n", "Processing chromosome C27364\r\n", "INFO [2014-03-08 06:24:27,014] [Preprocessor.java:241] [main] Processing chromosome C2737\r\n", "Processing chromosome C2737\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:27,063] [Preprocessor.java:241] [main] Processing chromosome C27378\r\n", "Processing chromosome C27378\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:27,099] [Preprocessor.java:241] [main] Processing chromosome C27386\r\n", "Processing chromosome C27386\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:27,128] [Preprocessor.java:241] [main] Processing chromosome C27394\r\n", "Processing chromosome C27394\r\n", "INFO [2014-03-08 06:24:27,154] [Preprocessor.java:241] [main] Processing chromosome C27400\r\n", "Processing chromosome C27400\r\n", "INFO [2014-03-08 06:24:27,163] [Preprocessor.java:241] [main] Processing chromosome C27410\r\n", "Processing chromosome C27410\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:27,195] [Preprocessor.java:241] [main] Processing chromosome C27412\r\n", "Processing chromosome C27412\r\n", "INFO [2014-03-08 06:24:27,217] [Preprocessor.java:241] [main] Processing chromosome C27428\r\n", "Processing chromosome C27428\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:27,230] [Preprocessor.java:241] [main] Processing chromosome C2743\r\n", "Processing chromosome C2743\r\n", "INFO [2014-03-08 06:24:27,268] [Preprocessor.java:241] [main] Processing chromosome C27432\r\n", "Processing chromosome C27432\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:27,299] [Preprocessor.java:241] [main] Processing chromosome C27444\r\n", "Processing chromosome C27444\r\n", "INFO [2014-03-08 06:24:27,319] [Preprocessor.java:241] [main] Processing chromosome C27446\r\n", "Processing chromosome C27446\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:27,335] [Preprocessor.java:241] [main] Processing chromosome C27452\r\n", "Processing chromosome C27452\r\n", "INFO [2014-03-08 06:24:27,368] [Preprocessor.java:241] [main] Processing chromosome C27460\r\n", "Processing chromosome C27460\r\n", "INFO [2014-03-08 06:24:27,373] [Preprocessor.java:241] [main] Processing chromosome C27462\r\n", "Processing chromosome C27462\r\n", "INFO [2014-03-08 06:24:27,383] [Preprocessor.java:241] [main] Processing chromosome C27478\r\n", "Processing chromosome C27478\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:27,404] [Preprocessor.java:241] [main] Processing chromosome C27480\r\n", "Processing chromosome C27480\r\n", "INFO [2014-03-08 06:24:27,430] [Preprocessor.java:241] [main] Processing chromosome C27482\r\n", "Processing chromosome C27482\r\n", "INFO [2014-03-08 06:24:27,433] [Preprocessor.java:241] [main] Processing chromosome C27498\r\n", "Processing chromosome C27498\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:27,453] [Preprocessor.java:241] [main] Processing chromosome C27500\r\n", "Processing chromosome C27500\r\n", "INFO [2014-03-08 06:24:27,486] [Preprocessor.java:241] [main] Processing chromosome C27510\r\n", "Processing chromosome C27510\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:27,496] [Preprocessor.java:241] [main] Processing chromosome C27526\r\n", "Processing chromosome C27526\r\n", "INFO [2014-03-08 06:24:27,509] [Preprocessor.java:241] [main] Processing chromosome C27530\r\n", "Processing chromosome C27530\r\n", "INFO [2014-03-08 06:24:27,536] [Preprocessor.java:241] [main] Processing chromosome C27552\r\n", "Processing chromosome C27552\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:27,545] [Preprocessor.java:241] [main] Processing chromosome C27556\r\n", "Processing chromosome C27556\r\n", "INFO [2014-03-08 06:24:27,556] [Preprocessor.java:241] [main] Processing chromosome C27558\r\n", "Processing chromosome C27558\r\n", "INFO [2014-03-08 06:24:27,564] [Preprocessor.java:241] [main] Processing chromosome C27566\r\n", "Processing chromosome C27566\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:27,599] [Preprocessor.java:241] [main] Processing chromosome C27570\r\n", "Processing chromosome C27570\r\n", "INFO [2014-03-08 06:24:27,618] [Preprocessor.java:241] [main] Processing chromosome C27578\r\n", "Processing chromosome C27578\r\n", "INFO [2014-03-08 06:24:27,626] [Preprocessor.java:241] [main] Processing chromosome C27580\r\n", "Processing chromosome C27580\r\n", "INFO [2014-03-08 06:24:27,628] [Preprocessor.java:241] [main] Processing chromosome C2761\r\n", "Processing chromosome C2761\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:27,694] [Preprocessor.java:241] [main] Processing chromosome C27612\r\n", "Processing chromosome C27612\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:27,726] [Preprocessor.java:241] [main] Processing chromosome C27614\r\n", "Processing chromosome C27614\r\n", "INFO [2014-03-08 06:24:27,739] [Preprocessor.java:241] [main] Processing chromosome C27630\r\n", "Processing chromosome C27630\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:27,757] [Preprocessor.java:241] [main] Processing chromosome C27638\r\n", "Processing chromosome C27638\r\n", "INFO [2014-03-08 06:24:27,773] [Preprocessor.java:241] [main] Processing chromosome C27640\r\n", "Processing chromosome C27640\r\n", "INFO [2014-03-08 06:24:27,785] [Preprocessor.java:241] [main] Processing chromosome C27644\r\n", "Processing chromosome C27644\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:27,832] [Preprocessor.java:241] [main] Processing chromosome C2765\r\n", "Processing chromosome C2765\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:27,902] [Preprocessor.java:241] [main] Processing chromosome C27668\r\n", "Processing chromosome C27668\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:27,927] [Preprocessor.java:241] [main] Processing chromosome C27688\r\n", "Processing chromosome C27688\r\n", "INFO [2014-03-08 06:24:27,956] [Preprocessor.java:241] [main] Processing chromosome C27692\r\n", "Processing chromosome C27692\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:27,965] [Preprocessor.java:241] [main] Processing chromosome C27694\r\n", "Processing chromosome C27694\r\n", "INFO [2014-03-08 06:24:27,982] [Preprocessor.java:241] [main] Processing chromosome C27696\r\n", "Processing chromosome C27696\r\n", "INFO [2014-03-08 06:24:27,998] [Preprocessor.java:241] [main] Processing chromosome C27698\r\n", "Processing chromosome C27698\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:28,041] [Preprocessor.java:241] [main] Processing chromosome C27700\r\n", "Processing chromosome C27700\r\n", "INFO [2014-03-08 06:24:28,055] [Preprocessor.java:241] [main] Processing chromosome C27706\r\n", "Processing chromosome C27706\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:28,065] [Preprocessor.java:241] [main] Processing chromosome C27712\r\n", "Processing chromosome C27712\r\n", "INFO [2014-03-08 06:24:28,091] [Preprocessor.java:241] [main] Processing chromosome C27718\r\n", "Processing chromosome C27718\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:28,133] [Preprocessor.java:241] [main] Processing chromosome C27722\r\n", "Processing chromosome C27722\r\n", "INFO [2014-03-08 06:24:28,140] [Preprocessor.java:241] [main] Processing chromosome C27726\r\n", "Processing chromosome C27726\r\n", "INFO [2014-03-08 06:24:28,146] [Preprocessor.java:241] [main] Processing chromosome C27732\r\n", "Processing chromosome C27732\r\n", "INFO [2014-03-08 06:24:28,149] [Preprocessor.java:241] [main] Processing chromosome C27742\r\n", "Processing chromosome C27742\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:28,168] [Preprocessor.java:241] [main] Processing chromosome C27746\r\n", "Processing chromosome C27746\r\n", "INFO [2014-03-08 06:24:28,196] [Preprocessor.java:241] [main] Processing chromosome C27748\r\n", "Processing chromosome C27748\r\n", "INFO [2014-03-08 06:24:28,200] [Preprocessor.java:241] [main] Processing chromosome C27754\r\n", "Processing chromosome C27754\r\n", "INFO [2014-03-08 06:24:28,214] [Preprocessor.java:241] [main] Processing chromosome C27762\r\n", "Processing chromosome C27762\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:28,232] [Preprocessor.java:241] [main] Processing chromosome C27770\r\n", "Processing chromosome C27770\r\n", "INFO [2014-03-08 06:24:28,259] [Preprocessor.java:241] [main] Processing chromosome C27778\r\n", "Processing chromosome C27778\r\n", "INFO [2014-03-08 06:24:28,264] [Preprocessor.java:241] [main] Processing chromosome C27784\r\n", "Processing chromosome C27784\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:28,302] [Preprocessor.java:241] [main] Processing chromosome C27792\r\n", "Processing chromosome C27792\r\n", "INFO [2014-03-08 06:24:28,313] [Preprocessor.java:241] [main] Processing chromosome C27794\r\n", "Processing chromosome C27794\r\n", "INFO [2014-03-08 06:24:28,317] [Preprocessor.java:241] [main] Processing chromosome C27812\r\n", "Processing chromosome C27812\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:28,359] [Preprocessor.java:241] [main] Processing chromosome C27816\r\n", "Processing chromosome C27816\r\n", "INFO [2014-03-08 06:24:28,369] [Preprocessor.java:241] [main] Processing chromosome C27830\r\n", "Processing chromosome C27830\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:28,375] [Preprocessor.java:241] [main] Processing chromosome C27836\r\n", "Processing chromosome C27836\r\n", "INFO [2014-03-08 06:24:28,382] [Preprocessor.java:241] [main] Processing chromosome C27850\r\n", "Processing chromosome C27850\r\n", "INFO [2014-03-08 06:24:28,395] [Preprocessor.java:241] [main] Processing chromosome C27874\r\n", "Processing chromosome C27874\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:28,428] [Preprocessor.java:241] [main] Processing chromosome C27882\r\n", "Processing chromosome C27882\r\n", "INFO [2014-03-08 06:24:28,437] [Preprocessor.java:241] [main] Processing chromosome C2789\r\n", "Processing chromosome C2789\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:28,500] [Preprocessor.java:241] [main] Processing chromosome C27902\r\n", "Processing chromosome C27902\r\n", "INFO [2014-03-08 06:24:28,503] [Preprocessor.java:241] [main] Processing chromosome C27928\r\n", "Processing chromosome C27928\r\n", "INFO [2014-03-08 06:24:28,511] [Preprocessor.java:241] [main] Processing chromosome C2793\r\n", "Processing chromosome C2793\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:28,548] [Preprocessor.java:241] [main] Processing chromosome C27944\r\n", "Processing chromosome C27944\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:28,597] [Preprocessor.java:241] [main] Processing chromosome C27954\r\n", "Processing chromosome C27954\r\n", "INFO [2014-03-08 06:24:28,619] [Preprocessor.java:241] [main] Processing chromosome C27962\r\n", "Processing chromosome C27962\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:28,640] [Preprocessor.java:241] [main] Processing chromosome C27964\r\n", "Processing chromosome C27964\r\n", "INFO [2014-03-08 06:24:28,657] [Preprocessor.java:241] [main] Processing chromosome C27966\r\n", "Processing chromosome C27966\r\n", "INFO [2014-03-08 06:24:28,666] [Preprocessor.java:241] [main] Processing chromosome C27984\r\n", "Processing chromosome C27984\r\n", "INFO [2014-03-08 06:24:28,670] [Preprocessor.java:241] [main] Processing chromosome C28002\r\n", "Processing chromosome C28002\r\n", "INFO [2014-03-08 06:24:28,682] [Preprocessor.java:241] [main] Processing chromosome C28004\r\n", "Processing chromosome C28004\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:28,707] [Preprocessor.java:241] [main] Processing chromosome C28006\r\n", "Processing chromosome C28006\r\n", "INFO [2014-03-08 06:24:28,719] [Preprocessor.java:241] [main] Processing chromosome C28016\r\n", "Processing chromosome C28016\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:28,739] [Preprocessor.java:241] [main] Processing chromosome C28026\r\n", "Processing chromosome C28026\r\n", "INFO [2014-03-08 06:24:28,747] [Preprocessor.java:241] [main] Processing chromosome C28030\r\n", "Processing chromosome C28030\r\n", "INFO [2014-03-08 06:24:28,755] [Preprocessor.java:241] [main] Processing chromosome C28036\r\n", "Processing chromosome C28036\r\n", "INFO [2014-03-08 06:24:28,776] [Preprocessor.java:241] [main] Processing chromosome C28044\r\n", "Processing chromosome C28044\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:28,811] [Preprocessor.java:241] [main] Processing chromosome C28062\r\n", "Processing chromosome C28062\r\n", "INFO [2014-03-08 06:24:28,824] [Preprocessor.java:241] [main] Processing chromosome C28064\r\n", "Processing chromosome C28064\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:28,886] [Preprocessor.java:241] [main] Processing chromosome C28070\r\n", "Processing chromosome C28070\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:28,924] [Preprocessor.java:241] [main] Processing chromosome C28076\r\n", "Processing chromosome C28076\r\n", "INFO [2014-03-08 06:24:28,943] [Preprocessor.java:241] [main] Processing chromosome C28082\r\n", "Processing chromosome C28082\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:28,969] [Preprocessor.java:241] [main] Processing chromosome C28090\r\n", "Processing chromosome C28090\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:29,009] [Preprocessor.java:241] [main] Processing chromosome C28108\r\n", "Processing chromosome C28108\r\n", "INFO [2014-03-08 06:24:29,021] [Preprocessor.java:241] [main] Processing chromosome C28120\r\n", "Processing chromosome C28120\r\n", "INFO [2014-03-08 06:24:29,032] [Preprocessor.java:241] [main] Processing chromosome C28132\r\n", "Processing chromosome C28132\r\n", "INFO [2014-03-08 06:24:29,045] [Preprocessor.java:241] [main] Processing chromosome C28144\r\n", "Processing chromosome C28144\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:29,073] [Preprocessor.java:241] [main] Processing chromosome C28150\r\n", "Processing chromosome C28150\r\n", "INFO [2014-03-08 06:24:29,080] [Preprocessor.java:241] [main] Processing chromosome C28152\r\n", "Processing chromosome C28152\r\n", "INFO [2014-03-08 06:24:29,087] [Preprocessor.java:241] [main] Processing chromosome C28168\r\n", "Processing chromosome C28168\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:29,105] [Preprocessor.java:241] [main] Processing chromosome C28170\r\n", "Processing chromosome C28170\r\n", "INFO [2014-03-08 06:24:29,133] [Preprocessor.java:241] [main] Processing chromosome C28184\r\n", "Processing chromosome C28184\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:29,157] [Preprocessor.java:241] [main] Processing chromosome C28190\r\n", "Processing chromosome C28190\r\n", "INFO [2014-03-08 06:24:29,197] [Preprocessor.java:241] [main] Processing chromosome C28194\r\n", "Processing chromosome C28194\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:29,207] [Preprocessor.java:241] [main] Processing chromosome C28206\r\n", "Processing chromosome C28206\r\n", "INFO [2014-03-08 06:24:29,226] [Preprocessor.java:241] [main] Processing chromosome C28216\r\n", "Processing chromosome C28216\r\n", "INFO [2014-03-08 06:24:29,238] [Preprocessor.java:241] [main] Processing chromosome C28218\r\n", "Processing chromosome C28218\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:29,269] [Preprocessor.java:241] [main] Processing chromosome C28224\r\n", "Processing chromosome C28224\r\n", "INFO [2014-03-08 06:24:29,282] [Preprocessor.java:241] [main] Processing chromosome C28230\r\n", "Processing chromosome C28230\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:29,316] [Preprocessor.java:241] [main] Processing chromosome C28242\r\n", "Processing chromosome C28242\r\n", "INFO [2014-03-08 06:24:29,349] [Preprocessor.java:241] [main] Processing chromosome C28246\r\n", "Processing chromosome C28246\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:29,380] [Preprocessor.java:241] [main] Processing chromosome C28254\r\n", "Processing chromosome C28254\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:29,420] [Preprocessor.java:241] [main] Processing chromosome C28256\r\n", "Processing chromosome C28256\r\n", "INFO [2014-03-08 06:24:29,433] [Preprocessor.java:241] [main] Processing chromosome C28258\r\n", "Processing chromosome C28258\r\n", "INFO [2014-03-08 06:24:29,465] [Preprocessor.java:241] [main] Processing chromosome C28260\r\n", "Processing chromosome C28260\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:29,494] [Preprocessor.java:241] [main] Processing chromosome C28272\r\n", "Processing chromosome C28272\r\n", "INFO [2014-03-08 06:24:29,519] [Preprocessor.java:241] [main] Processing chromosome C28276\r\n", "Processing chromosome C28276\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:29,522] [Preprocessor.java:241] [main] Processing chromosome C28282\r\n", "Processing chromosome C28282\r\n", "INFO [2014-03-08 06:24:29,538] [Preprocessor.java:241] [main] Processing chromosome C28286\r\n", "Processing chromosome C28286\r\n", "INFO [2014-03-08 06:24:29,558] [Preprocessor.java:241] [main] Processing chromosome C28296\r\n", "Processing chromosome C28296\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:29,583] [Preprocessor.java:241] [main] Processing chromosome C28298\r\n", "Processing chromosome C28298\r\n", "INFO [2014-03-08 06:24:29,600] [Preprocessor.java:241] [main] Processing chromosome C28306\r\n", "Processing chromosome C28306\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:29,633] [Preprocessor.java:241] [main] Processing chromosome C28310\r\n", "Processing chromosome C28310\r\n", "INFO [2014-03-08 06:24:29,644] [Preprocessor.java:241] [main] Processing chromosome C28316\r\n", "Processing chromosome C28316\r\n", "INFO [2014-03-08 06:24:29,647] [Preprocessor.java:241] [main] Processing chromosome C28328\r\n", "Processing chromosome C28328\r\n", "INFO [2014-03-08 06:24:29,656] [Preprocessor.java:241] [main] Processing chromosome C28340\r\n", "Processing chromosome C28340\r\n", "INFO [2014-03-08 06:24:29,673] [Preprocessor.java:241] [main] Processing chromosome C28348\r\n", "Processing chromosome C28348\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:29,707] [Preprocessor.java:241] [main] Processing chromosome C28350\r\n", "Processing chromosome C28350\r\n", "INFO [2014-03-08 06:24:29,719] [Preprocessor.java:241] [main] Processing chromosome C28358\r\n", "Processing chromosome C28358\r\n", "INFO [2014-03-08 06:24:29,721] [Preprocessor.java:241] [main] Processing chromosome C28362\r\n", "Processing chromosome C28362\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:29,748] [Preprocessor.java:241] [main] Processing chromosome C28364\r\n", "Processing chromosome C28364\r\n", "INFO [2014-03-08 06:24:29,759] [Preprocessor.java:241] [main] Processing chromosome C28366\r\n", "Processing chromosome C28366\r\n", "INFO [2014-03-08 06:24:29,766] [Preprocessor.java:241] [main] Processing chromosome C28382\r\n", "Processing chromosome C28382\r\n", "INFO [2014-03-08 06:24:29,777] [Preprocessor.java:241] [main] Processing chromosome C28398\r\n", "Processing chromosome C28398\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:29,840] [Preprocessor.java:241] [main] Processing chromosome C28408\r\n", "Processing chromosome C28408\r\n", "INFO [2014-03-08 06:24:29,859] [Preprocessor.java:241] [main] Processing chromosome C28414\r\n", "Processing chromosome C28414\r\n", "INFO [2014-03-08 06:24:29,878] [Preprocessor.java:241] [main] Processing chromosome C28420\r\n", "Processing chromosome C28420\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:29,889] [Preprocessor.java:241] [main] Processing chromosome C28426\r\n", "Processing chromosome C28426\r\n", "INFO [2014-03-08 06:24:29,927] [Preprocessor.java:241] [main] Processing chromosome C28430\r\n", "Processing chromosome C28430\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:29,961] [Preprocessor.java:241] [main] Processing chromosome C28432\r\n", "Processing chromosome C28432\r\n", "INFO [2014-03-08 06:24:29,976] [Preprocessor.java:241] [main] Processing chromosome C28444\r\n", "Processing chromosome C28444\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:29,997] [Preprocessor.java:241] [main] Processing chromosome C28450\r\n", "Processing chromosome C28450\r\n", "INFO [2014-03-08 06:24:30,003] [Preprocessor.java:241] [main] Processing chromosome C28454\r\n", "Processing chromosome C28454\r\n", "INFO [2014-03-08 06:24:30,039] [Preprocessor.java:241] [main] Processing chromosome C28462\r\n", "Processing chromosome C28462\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:30,066] [Preprocessor.java:241] [main] Processing chromosome C28468\r\n", "Processing chromosome C28468\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:30,097] [Preprocessor.java:241] [main] Processing chromosome C28470\r\n", "Processing chromosome C28470\r\n", "INFO [2014-03-08 06:24:30,103] [Preprocessor.java:241] [main] Processing chromosome C28472\r\n", "Processing chromosome C28472\r\n", "INFO [2014-03-08 06:24:30,129] [Preprocessor.java:241] [main] Processing chromosome C28476\r\n", "Processing chromosome C28476\r\n", "INFO [2014-03-08 06:24:30,134] [Preprocessor.java:241] [main] Processing chromosome C28486\r\n", "Processing chromosome C28486\r\n", "INFO [2014-03-08 06:24:30,141] [Preprocessor.java:241] [main] Processing chromosome C28498\r\n", "Processing chromosome C28498\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:30,169] [Preprocessor.java:241] [main] Processing chromosome C28502\r\n", "Processing chromosome C28502\r\n", "INFO [2014-03-08 06:24:30,176] [Preprocessor.java:241] [main] Processing chromosome C28506\r\n", "Processing chromosome C28506\r\n", "INFO [2014-03-08 06:24:30,192] [Preprocessor.java:241] [main] Processing chromosome C28510\r\n", "Processing chromosome C28510\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:30,203] [Preprocessor.java:241] [main] Processing chromosome C28512\r\n", "Processing chromosome C28512\r\n", "INFO [2014-03-08 06:24:30,230] [Preprocessor.java:241] [main] Processing chromosome C28514\r\n", "Processing chromosome C28514\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:30,277] [Preprocessor.java:241] [main] Processing chromosome C28522\r\n", "Processing chromosome C28522\r\n", "INFO [2014-03-08 06:24:30,296] [Preprocessor.java:241] [main] Processing chromosome C28526\r\n", "Processing chromosome C28526\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:30,314] [Preprocessor.java:241] [main] Processing chromosome C28534\r\n", "Processing chromosome C28534\r\n", "INFO [2014-03-08 06:24:30,351] [Preprocessor.java:241] [main] Processing chromosome C28536\r\n", "Processing chromosome C28536\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:30,416] [Preprocessor.java:241] [main] Processing chromosome C28540\r\n", "Processing chromosome C28540\r\n", "INFO [2014-03-08 06:24:30,442] [Preprocessor.java:241] [main] Processing chromosome C28542\r\n", "Processing chromosome C28542\r\n", "INFO [2014-03-08 06:24:30,444] [Preprocessor.java:241] [main] Processing chromosome C28544\r\n", "Processing chromosome C28544\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:30,486] [Preprocessor.java:241] [main] Processing chromosome C28546\r\n", "Processing chromosome C28546\r\n", "INFO [2014-03-08 06:24:30,506] [Preprocessor.java:241] [main] Processing chromosome C28550\r\n", "Processing chromosome C28550\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:30,515] [Preprocessor.java:241] [main] Processing chromosome C28554\r\n", "Processing chromosome C28554\r\n", "INFO [2014-03-08 06:24:30,524] [Preprocessor.java:241] [main] Processing chromosome C28574\r\n", "Processing chromosome C28574\r\n", "INFO [2014-03-08 06:24:30,528] [Preprocessor.java:241] [main] Processing chromosome C28582\r\n", "Processing chromosome C28582\r\n", "INFO [2014-03-08 06:24:30,535] [Preprocessor.java:241] [main] Processing chromosome C28588\r\n", "Processing chromosome C28588\r\n", "INFO [2014-03-08 06:24:30,548] [Preprocessor.java:241] [main] Processing chromosome C28592\r\n", "Processing chromosome C28592\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:30,569] [Preprocessor.java:241] [main] Processing chromosome C28594\r\n", "Processing chromosome C28594\r\n", "INFO [2014-03-08 06:24:30,590] [Preprocessor.java:241] [main] Processing chromosome C28602\r\n", "Processing chromosome C28602\r\n", "INFO [2014-03-08 06:24:30,602] [Preprocessor.java:241] [main] Processing chromosome C28618\r\n", "Processing chromosome C28618\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:30,618] [Preprocessor.java:241] [main] Processing chromosome C28622\r\n", "Processing chromosome C28622\r\n", "INFO [2014-03-08 06:24:30,656] [Preprocessor.java:241] [main] Processing chromosome C28626\r\n", "Processing chromosome C28626\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:30,678] [Preprocessor.java:241] [main] Processing chromosome C28628\r\n", "Processing chromosome C28628\r\n", "INFO [2014-03-08 06:24:30,692] [Preprocessor.java:241] [main] Processing chromosome C28632\r\n", "Processing chromosome C28632\r\n", "INFO [2014-03-08 06:24:30,706] [Preprocessor.java:241] [main] Processing chromosome C28644\r\n", "Processing chromosome C28644\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:30,730] [Preprocessor.java:241] [main] Processing chromosome C28652\r\n", "Processing chromosome C28652\r\n", "INFO [2014-03-08 06:24:30,746] [Preprocessor.java:241] [main] Processing chromosome C28654\r\n", "Processing chromosome C28654\r\n", "INFO [2014-03-08 06:24:30,756] [Preprocessor.java:241] [main] Processing chromosome C28656\r\n", "Processing chromosome C28656\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:30,782] [Preprocessor.java:241] [main] Processing chromosome C28666\r\n", "Processing chromosome C28666\r\n", "INFO [2014-03-08 06:24:30,809] [Preprocessor.java:241] [main] Processing chromosome C28678\r\n", "Processing chromosome C28678\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:30,846] [Preprocessor.java:241] [main] Processing chromosome C28684\r\n", "Processing chromosome C28684\r\n", "INFO [2014-03-08 06:24:30,869] [Preprocessor.java:241] [main] Processing chromosome C28702\r\n", "Processing chromosome C28702\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:30,877] [Preprocessor.java:241] [main] Processing chromosome C28704\r\n", "Processing chromosome C28704\r\n", "INFO [2014-03-08 06:24:30,893] [Preprocessor.java:241] [main] Processing chromosome C28708\r\n", "Processing chromosome C28708\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:30,933] [Preprocessor.java:241] [main] Processing chromosome C28716\r\n", "Processing chromosome C28716\r\n", "INFO [2014-03-08 06:24:30,950] [Preprocessor.java:241] [main] Processing chromosome C28718\r\n", "Processing chromosome C28718\r\n", "INFO [2014-03-08 06:24:30,964] [Preprocessor.java:241] [main] Processing chromosome C28722\r\n", "Processing chromosome C28722\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:30,988] [Preprocessor.java:241] [main] Processing chromosome C28726\r\n", "Processing chromosome C28726\r\n", "INFO [2014-03-08 06:24:31,003] [Preprocessor.java:241] [main] Processing chromosome C28728\r\n", "Processing chromosome C28728\r\n", "INFO [2014-03-08 06:24:31,014] [Preprocessor.java:241] [main] Processing chromosome C28732\r\n", "Processing chromosome C28732\r\n", "INFO [2014-03-08 06:24:31,032] [Preprocessor.java:241] [main] Processing chromosome C28734\r\n", "Processing chromosome C28734\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:31,042] [Preprocessor.java:241] [main] Processing chromosome C28736\r\n", "Processing chromosome C28736\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:31,092] [Preprocessor.java:241] [main] Processing chromosome C28748\r\n", "Processing chromosome C28748\r\n", "INFO [2014-03-08 06:24:31,098] [Preprocessor.java:241] [main] Processing chromosome C28752\r\n", "Processing chromosome C28752\r\n", "INFO [2014-03-08 06:24:31,116] [Preprocessor.java:241] [main] Processing chromosome C28760\r\n", "Processing chromosome C28760\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:31,153] [Preprocessor.java:241] [main] Processing chromosome C28766\r\n", "Processing chromosome C28766\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:31,189] [Preprocessor.java:241] [main] Processing chromosome C2877\r\n", "Processing chromosome C2877\r\n", "INFO [2014-03-08 06:24:31,229] [Preprocessor.java:241] [main] Processing chromosome C28772\r\n", "Processing chromosome C28772\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:31,272] [Preprocessor.java:241] [main] Processing chromosome C28784\r\n", "Processing chromosome C28784\r\n", "INFO [2014-03-08 06:24:31,275] [Preprocessor.java:241] [main] Processing chromosome C28800\r\n", "Processing chromosome C28800\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:31,294] [Preprocessor.java:241] [main] Processing chromosome C28802\r\n", "Processing chromosome C28802\r\n", "INFO [2014-03-08 06:24:31,316] [Preprocessor.java:241] [main] Processing chromosome C28806\r\n", "Processing chromosome C28806\r\n", "INFO [2014-03-08 06:24:31,337] [Preprocessor.java:241] [main] Processing chromosome C28808\r\n", "Processing chromosome C28808\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:31,345] [Preprocessor.java:241] [main] Processing chromosome C28816\r\n", "Processing chromosome C28816\r\n", "INFO [2014-03-08 06:24:31,369] [Preprocessor.java:241] [main] Processing chromosome C28830\r\n", "Processing chromosome C28830\r\n", "INFO [2014-03-08 06:24:31,378] [Preprocessor.java:241] [main] Processing chromosome C28836\r\n", "Processing chromosome C28836\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:31,397] [Preprocessor.java:241] [main] Processing chromosome C28838\r\n", "Processing chromosome C28838\r\n", "INFO [2014-03-08 06:24:31,424] [Preprocessor.java:241] [main] Processing chromosome C28840\r\n", "Processing chromosome C28840\r\n", "INFO [2014-03-08 06:24:31,436] [Preprocessor.java:241] [main] Processing chromosome C28846\r\n", "Processing chromosome C28846\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:31,459] [Preprocessor.java:241] [main] Processing chromosome C28850\r\n", "Processing chromosome C28850\r\n", "INFO [2014-03-08 06:24:31,478] [Preprocessor.java:241] [main] Processing chromosome C28852\r\n", "Processing chromosome C28852\r\n", "INFO [2014-03-08 06:24:31,494] [Preprocessor.java:241] [main] Processing chromosome C28858\r\n", "Processing chromosome C28858\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:31,502] [Preprocessor.java:241] [main] Processing chromosome C28864\r\n", "Processing chromosome C28864\r\n", "INFO [2014-03-08 06:24:31,513] [Preprocessor.java:241] [main] Processing chromosome C28876\r\n", "Processing chromosome C28876\r\n", "INFO [2014-03-08 06:24:31,523] [Preprocessor.java:241] [main] Processing chromosome C28884\r\n", "Processing chromosome C28884\r\n", "INFO [2014-03-08 06:24:31,529] [Preprocessor.java:241] [main] Processing chromosome C28898\r\n", "Processing chromosome C28898\r\n", "INFO [2014-03-08 06:24:31,541] [Preprocessor.java:241] [main] Processing chromosome C28902\r\n", "Processing chromosome C28902\r\n", "INFO [2014-03-08 06:24:31,550] [Preprocessor.java:241] [main] Processing chromosome C28906\r\n", "Processing chromosome C28906\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:31,561] [Preprocessor.java:241] [main] Processing chromosome C28910\r\n", "Processing chromosome C28910\r\n", "INFO [2014-03-08 06:24:31,576] [Preprocessor.java:241] [main] Processing chromosome C28916\r\n", "Processing chromosome C28916\r\n", "INFO [2014-03-08 06:24:31,585] [Preprocessor.java:241] [main] Processing chromosome C28934\r\n", "Processing chromosome C28934\r\n", "INFO [2014-03-08 06:24:31,595] [Preprocessor.java:241] [main] Processing chromosome C28952\r\n", "Processing chromosome C28952\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:31,613] [Preprocessor.java:241] [main] Processing chromosome C28958\r\n", "Processing chromosome C28958\r\n", "INFO [2014-03-08 06:24:31,619] [Preprocessor.java:241] [main] Processing chromosome C28974\r\n", "Processing chromosome C28974\r\n", "INFO [2014-03-08 06:24:31,643] [Preprocessor.java:241] [main] Processing chromosome C28982\r\n", "Processing chromosome C28982\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:31,667] [Preprocessor.java:241] [main] Processing chromosome C28990\r\n", "Processing chromosome C28990\r\n", "INFO [2014-03-08 06:24:31,696] [Preprocessor.java:241] [main] Processing chromosome C28992\r\n", "Processing chromosome C28992\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:31,731] [Preprocessor.java:241] [main] Processing chromosome C28996\r\n", "Processing chromosome C28996\r\n", "INFO [2014-03-08 06:24:31,750] [Preprocessor.java:241] [main] Processing chromosome C28998\r\n", "Processing chromosome C28998\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:31,780] [Preprocessor.java:241] [main] Processing chromosome C29006\r\n", "Processing chromosome C29006\r\n", "INFO [2014-03-08 06:24:31,787] [Preprocessor.java:241] [main] Processing chromosome C29008\r\n", "Processing chromosome C29008\r\n", "INFO [2014-03-08 06:24:31,808] [Preprocessor.java:241] [main] Processing chromosome C29010\r\n", "Processing chromosome C29010\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:31,824] [Preprocessor.java:241] [main] Processing chromosome C29022\r\n", "Processing chromosome C29022\r\n", "INFO [2014-03-08 06:24:31,831] [Preprocessor.java:241] [main] Processing chromosome C29030\r\n", "Processing chromosome C29030\r\n", "INFO [2014-03-08 06:24:31,836] [Preprocessor.java:241] [main] Processing chromosome C29038\r\n", "Processing chromosome C29038\r\n", "INFO [2014-03-08 06:24:31,843] [Preprocessor.java:241] [main] Processing chromosome C29044\r\n", "Processing chromosome C29044\r\n", "INFO [2014-03-08 06:24:31,847] [Preprocessor.java:241] [main] Processing chromosome C29048\r\n", "Processing chromosome C29048\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:31,873] [Preprocessor.java:241] [main] Processing chromosome C29050\r\n", "Processing chromosome C29050\r\n", "INFO [2014-03-08 06:24:31,888] [Preprocessor.java:241] [main] Processing chromosome C29052\r\n", "Processing chromosome C29052\r\n", "INFO [2014-03-08 06:24:31,911] [Preprocessor.java:241] [main] Processing chromosome C29066\r\n", "Processing chromosome C29066\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:31,928] [Preprocessor.java:241] [main] Processing chromosome C29070\r\n", "Processing chromosome C29070\r\n", "INFO [2014-03-08 06:24:31,949] [Preprocessor.java:241] [main] Processing chromosome C29072\r\n", "Processing chromosome C29072\r\n", "INFO [2014-03-08 06:24:31,951] [Preprocessor.java:241] [main] Processing chromosome C29084\r\n", "Processing chromosome C29084\r\n", "INFO [2014-03-08 06:24:31,956] [Preprocessor.java:241] [main] Processing chromosome C29100\r\n", "Processing chromosome C29100\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:31,980] [Preprocessor.java:241] [main] Processing chromosome C29106\r\n", "Processing chromosome C29106\r\n", "INFO [2014-03-08 06:24:31,983] [Preprocessor.java:241] [main] Processing chromosome C29108\r\n", "Processing chromosome C29108\r\n", "INFO [2014-03-08 06:24:31,985] [Preprocessor.java:241] [main] Processing chromosome C29110\r\n", "Processing chromosome C29110\r\n", "INFO [2014-03-08 06:24:31,999] [Preprocessor.java:241] [main] Processing chromosome C29112\r\n", "Processing chromosome C29112\r\n", "INFO [2014-03-08 06:24:32,017] [Preprocessor.java:241] [main] Processing chromosome C29114\r\n", "Processing chromosome C29114\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:32,030] [Preprocessor.java:241] [main] Processing chromosome C29122\r\n", "Processing chromosome C29122\r\n", "INFO [2014-03-08 06:24:32,032] [Preprocessor.java:241] [main] Processing chromosome C29132\r\n", "Processing chromosome C29132\r\n", "INFO [2014-03-08 06:24:32,049] [Preprocessor.java:241] [main] Processing chromosome C29134\r\n", "Processing chromosome C29134\r\n", "INFO [2014-03-08 06:24:32,068] [Preprocessor.java:241] [main] Processing chromosome C29144\r\n", "Processing chromosome C29144\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:32,093] [Preprocessor.java:241] [main] Processing chromosome C29154\r\n", "Processing chromosome C29154\r\n", "INFO [2014-03-08 06:24:32,098] [Preprocessor.java:241] [main] Processing chromosome C29164\r\n", "Processing chromosome C29164\r\n", "INFO [2014-03-08 06:24:32,126] [Preprocessor.java:241] [main] Processing chromosome C29168\r\n", "Processing chromosome C29168\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:32,180] [Preprocessor.java:241] [main] Processing chromosome C29170\r\n", "Processing chromosome C29170\r\n", "INFO [2014-03-08 06:24:32,185] [Preprocessor.java:241] [main] Processing chromosome C29178\r\n", "Processing chromosome C29178\r\n", "INFO [2014-03-08 06:24:32,211] [Preprocessor.java:241] [main] Processing chromosome C29184\r\n", "Processing chromosome C29184\r\n", "INFO [2014-03-08 06:24:32,224] [Preprocessor.java:241] [main] Processing chromosome C29186\r\n", "Processing chromosome C29186\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:32,266] [Preprocessor.java:241] [main] Processing chromosome C29188\r\n", "Processing chromosome C29188\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:32,289] [Preprocessor.java:241] [main] Processing chromosome C29192\r\n", "Processing chromosome C29192\r\n", "INFO [2014-03-08 06:24:32,298] [Preprocessor.java:241] [main] Processing chromosome C29194\r\n", "Processing chromosome C29194\r\n", "INFO [2014-03-08 06:24:32,308] [Preprocessor.java:241] [main] Processing chromosome C29202\r\n", "Processing chromosome C29202\r\n", "INFO [2014-03-08 06:24:32,311] [Preprocessor.java:241] [main] Processing chromosome C29208\r\n", "Processing chromosome C29208\r\n", "INFO [2014-03-08 06:24:32,333] [Preprocessor.java:241] [main] Processing chromosome C29214\r\n", "Processing chromosome C29214\r\n", "INFO [2014-03-08 06:24:32,337] [Preprocessor.java:241] [main] Processing chromosome C29222\r\n", "Processing chromosome C29222\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:32,350] [Preprocessor.java:241] [main] Processing chromosome C29224\r\n", "Processing chromosome C29224\r\n", "INFO [2014-03-08 06:24:32,354] [Preprocessor.java:241] [main] Processing chromosome C29238\r\n", "Processing chromosome C29238\r\n", "INFO [2014-03-08 06:24:32,368] [Preprocessor.java:241] [main] Processing chromosome C29242\r\n", "Processing chromosome C29242\r\n", "INFO [2014-03-08 06:24:32,374] [Preprocessor.java:241] [main] Processing chromosome C29244\r\n", "Processing chromosome C29244\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:32,399] [Preprocessor.java:241] [main] Processing chromosome C29246\r\n", "Processing chromosome C29246\r\n", "INFO [2014-03-08 06:24:32,410] [Preprocessor.java:241] [main] Processing chromosome C29248\r\n", "Processing chromosome C29248\r\n", "INFO [2014-03-08 06:24:32,425] [Preprocessor.java:241] [main] Processing chromosome C29254\r\n", "Processing chromosome C29254\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:32,459] [Preprocessor.java:241] [main] Processing chromosome C29258\r\n", "Processing chromosome C29258\r\n", "INFO [2014-03-08 06:24:32,486] [Preprocessor.java:241] [main] Processing chromosome C29260\r\n", "Processing chromosome C29260\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:32,505] [Preprocessor.java:241] [main] Processing chromosome C29272\r\n", "Processing chromosome C29272\r\n", "INFO [2014-03-08 06:24:32,509] [Preprocessor.java:241] [main] Processing chromosome C29274\r\n", "Processing chromosome C29274\r\n", "INFO [2014-03-08 06:24:32,528] [Preprocessor.java:241] [main] Processing chromosome C29280\r\n", "Processing chromosome C29280\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:32,556] [Preprocessor.java:241] [main] Processing chromosome C29290\r\n", "Processing chromosome C29290\r\n", "INFO [2014-03-08 06:24:32,564] [Preprocessor.java:241] [main] Processing chromosome C29294\r\n", "Processing chromosome C29294\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:32,608] [Preprocessor.java:241] [main] Processing chromosome C29298\r\n", "Processing chromosome C29298\r\n", "INFO [2014-03-08 06:24:32,636] [Preprocessor.java:241] [main] Processing chromosome C29300\r\n", "Processing chromosome C29300\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:32,661] [Preprocessor.java:241] [main] Processing chromosome C29308\r\n", "Processing chromosome C29308\r\n", "INFO [2014-03-08 06:24:32,671] [Preprocessor.java:241] [main] Processing chromosome C2931\r\n", "Processing chromosome C2931\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:32,740] [Preprocessor.java:241] [main] Processing chromosome C29320\r\n", "Processing chromosome C29320\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:32,763] [Preprocessor.java:241] [main] Processing chromosome C29322\r\n", "Processing chromosome C29322\r\n", "INFO [2014-03-08 06:24:32,783] [Preprocessor.java:241] [main] Processing chromosome C29340\r\n", "Processing chromosome C29340\r\n", "INFO [2014-03-08 06:24:32,789] [Preprocessor.java:241] [main] Processing chromosome C29344\r\n", "Processing chromosome C29344\r\n", "INFO [2014-03-08 06:24:32,798] [Preprocessor.java:241] [main] Processing chromosome C29346\r\n", "Processing chromosome C29346\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:32,822] [Preprocessor.java:241] [main] Processing chromosome C29348\r\n", "Processing chromosome C29348\r\n", "INFO [2014-03-08 06:24:32,829] [Preprocessor.java:241] [main] Processing chromosome C29354\r\n", "Processing chromosome C29354\r\n", "INFO [2014-03-08 06:24:32,837] [Preprocessor.java:241] [main] Processing chromosome C29356\r\n", "Processing chromosome C29356\r\n", "INFO [2014-03-08 06:24:32,853] [Preprocessor.java:241] [main] Processing chromosome C29362\r\n", "Processing chromosome C29362\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:32,871] [Preprocessor.java:241] [main] Processing chromosome C29364\r\n", "Processing chromosome C29364\r\n", "INFO [2014-03-08 06:24:32,884] [Preprocessor.java:241] [main] Processing chromosome C29368\r\n", "Processing chromosome C29368\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:32,941] [Preprocessor.java:241] [main] Processing chromosome C29380\r\n", "Processing chromosome C29380\r\n", "INFO [2014-03-08 06:24:32,959] [Preprocessor.java:241] [main] Processing chromosome C29388\r\n", "Processing chromosome C29388\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:33,036] [Preprocessor.java:241] [main] Processing chromosome C29394\r\n", "Processing chromosome C29394\r\n", "INFO [2014-03-08 06:24:33,067] [Preprocessor.java:241] [main] Processing chromosome C29398\r\n", "Processing chromosome C29398\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:33,104] [Preprocessor.java:241] [main] Processing chromosome C29400\r\n", "Processing chromosome C29400\r\n", "INFO [2014-03-08 06:24:33,114] [Preprocessor.java:241] [main] Processing chromosome C29408\r\n", "Processing chromosome C29408\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:33,120] [Preprocessor.java:241] [main] Processing chromosome C29410\r\n", "Processing chromosome C29410\r\n", "INFO [2014-03-08 06:24:33,175] [Preprocessor.java:241] [main] Processing chromosome C29414\r\n", "Processing chromosome C29414\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:33,187] [Preprocessor.java:241] [main] Processing chromosome C29416\r\n", "Processing chromosome C29416\r\n", "INFO [2014-03-08 06:24:33,193] [Preprocessor.java:241] [main] Processing chromosome C29424\r\n", "Processing chromosome C29424\r\n", "INFO [2014-03-08 06:24:33,215] [Preprocessor.java:241] [main] Processing chromosome C29428\r\n", "Processing chromosome C29428\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:33,250] [Preprocessor.java:241] [main] Processing chromosome C29432\r\n", "Processing chromosome C29432\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:33,333] [Preprocessor.java:241] [main] Processing chromosome C29438\r\n", "Processing chromosome C29438\r\n", "INFO [2014-03-08 06:24:33,343] [Preprocessor.java:241] [main] Processing chromosome C29444\r\n", "Processing chromosome C29444\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:33,395] [Preprocessor.java:241] [main] Processing chromosome C29446\r\n", "Processing chromosome C29446\r\n", "INFO [2014-03-08 06:24:33,420] [Preprocessor.java:241] [main] Processing chromosome C29450\r\n", "Processing chromosome C29450\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:33,451] [Preprocessor.java:241] [main] Processing chromosome C29458\r\n", "Processing chromosome C29458\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:33,490] [Preprocessor.java:241] [main] Processing chromosome C29472\r\n", "Processing chromosome C29472\r\n", "INFO [2014-03-08 06:24:33,497] [Preprocessor.java:241] [main] Processing chromosome C29474\r\n", "Processing chromosome C29474\r\n", "INFO [2014-03-08 06:24:33,539] [Preprocessor.java:241] [main] Processing chromosome C29494\r\n", "Processing chromosome C29494\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:33,551] [Preprocessor.java:241] [main] Processing chromosome C29498\r\n", "Processing chromosome C29498\r\n", "INFO [2014-03-08 06:24:33,559] [Preprocessor.java:241] [main] Processing chromosome C29506\r\n", "Processing chromosome C29506\r\n", "INFO [2014-03-08 06:24:33,583] [Preprocessor.java:241] [main] Processing chromosome C29510\r\n", "Processing chromosome C29510\r\n", "INFO [2014-03-08 06:24:33,591] [Preprocessor.java:241] [main] Processing chromosome C29516\r\n", "Processing chromosome C29516\r\n", "INFO [2014-03-08 06:24:33,593] [Preprocessor.java:241] [main] Processing chromosome C29518\r\n", "Processing chromosome C29518\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:33,608] [Preprocessor.java:241] [main] Processing chromosome C29524\r\n", "Processing chromosome C29524\r\n", "INFO [2014-03-08 06:24:33,612] [Preprocessor.java:241] [main] Processing chromosome C29526\r\n", "Processing chromosome C29526\r\n", "INFO [2014-03-08 06:24:33,629] [Preprocessor.java:241] [main] Processing chromosome C29530\r\n", "Processing chromosome C29530\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:33,652] [Preprocessor.java:241] [main] Processing chromosome C29538\r\n", "Processing chromosome C29538\r\n", "INFO [2014-03-08 06:24:33,691] [Preprocessor.java:241] [main] Processing chromosome C29540\r\n", "Processing chromosome C29540\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:33,714] [Preprocessor.java:241] [main] Processing chromosome C29542\r\n", "Processing chromosome C29542\r\n", "INFO [2014-03-08 06:24:33,716] [Preprocessor.java:241] [main] Processing chromosome C29544\r\n", "Processing chromosome C29544\r\n", "INFO [2014-03-08 06:24:33,722] [Preprocessor.java:241] [main] Processing chromosome C29548\r\n", "Processing chromosome C29548\r\n", "INFO [2014-03-08 06:24:33,730] [Preprocessor.java:241] [main] Processing chromosome C29554\r\n", "Processing chromosome C29554\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:33,753] [Preprocessor.java:241] [main] Processing chromosome C29558\r\n", "Processing chromosome C29558\r\n", "INFO [2014-03-08 06:24:33,762] [Preprocessor.java:241] [main] Processing chromosome C29566\r\n", "Processing chromosome C29566\r\n", "INFO [2014-03-08 06:24:33,765] [Preprocessor.java:241] [main] Processing chromosome C29572\r\n", "Processing chromosome C29572\r\n", "INFO [2014-03-08 06:24:33,775] [Preprocessor.java:241] [main] Processing chromosome C29576\r\n", "Processing chromosome C29576\r\n", "INFO [2014-03-08 06:24:33,798] [Preprocessor.java:241] [main] Processing chromosome C29582\r\n", "Processing chromosome C29582\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:33,804] [Preprocessor.java:241] [main] Processing chromosome C29584\r\n", "Processing chromosome C29584\r\n", "INFO [2014-03-08 06:24:33,851] [Preprocessor.java:241] [main] Processing chromosome C29612\r\n", "Processing chromosome C29612\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:33,871] [Preprocessor.java:241] [main] Processing chromosome C29614\r\n", "Processing chromosome C29614\r\n", "INFO [2014-03-08 06:24:33,896] [Preprocessor.java:241] [main] Processing chromosome C29618\r\n", "Processing chromosome C29618\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:33,914] [Preprocessor.java:241] [main] Processing chromosome C29620\r\n", "Processing chromosome C29620\r\n", "INFO [2014-03-08 06:24:33,934] [Preprocessor.java:241] [main] Processing chromosome C29624\r\n", "Processing chromosome C29624\r\n", "INFO [2014-03-08 06:24:33,956] [Preprocessor.java:241] [main] Processing chromosome C29632\r\n", "Processing chromosome C29632\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:33,973] [Preprocessor.java:241] [main] Processing chromosome C29634\r\n", "Processing chromosome C29634\r\n", "INFO [2014-03-08 06:24:34,008] [Preprocessor.java:241] [main] Processing chromosome C29638\r\n", "Processing chromosome C29638\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:34,028] [Preprocessor.java:241] [main] Processing chromosome C29642\r\n", "Processing chromosome C29642\r\n", "INFO [2014-03-08 06:24:34,043] [Preprocessor.java:241] [main] Processing chromosome C29644\r\n", "Processing chromosome C29644\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:34,073] [Preprocessor.java:241] [main] Processing chromosome C29662\r\n", "Processing chromosome C29662\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:34,145] [Preprocessor.java:241] [main] Processing chromosome C29664\r\n", "Processing chromosome C29664\r\n", "INFO [2014-03-08 06:24:34,149] [Preprocessor.java:241] [main] Processing chromosome C2967\r\n", "Processing chromosome C2967\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:34,217] [Preprocessor.java:241] [main] Processing chromosome C29670\r\n", "Processing chromosome C29670\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:34,224] [Preprocessor.java:241] [main] Processing chromosome C29678\r\n", "Processing chromosome C29678\r\n", "INFO [2014-03-08 06:24:34,233] [Preprocessor.java:241] [main] Processing chromosome C29680\r\n", "Processing chromosome C29680\r\n", "INFO [2014-03-08 06:24:34,236] [Preprocessor.java:241] [main] Processing chromosome C29682\r\n", "Processing chromosome C29682\r\n", "INFO [2014-03-08 06:24:34,246] [Preprocessor.java:241] [main] Processing chromosome C29704\r\n", "Processing chromosome C29704\r\n", "INFO [2014-03-08 06:24:34,256] [Preprocessor.java:241] [main] Processing chromosome C29722\r\n", "Processing chromosome C29722\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:34,291] [Preprocessor.java:241] [main] Processing chromosome C29724\r\n", "Processing chromosome C29724\r\n", "INFO [2014-03-08 06:24:34,294] [Preprocessor.java:241] [main] Processing chromosome C29730\r\n", "Processing chromosome C29730\r\n", "INFO [2014-03-08 06:24:34,303] [Preprocessor.java:241] [main] Processing chromosome C29734\r\n", "Processing chromosome C29734\r\n", "INFO [2014-03-08 06:24:34,324] [Preprocessor.java:241] [main] Processing chromosome C29736\r\n", "Processing chromosome C29736\r\n", "INFO [2014-03-08 06:24:34,332] [Preprocessor.java:241] [main] Processing chromosome C29750\r\n", "Processing chromosome C29750\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:34,362] [Preprocessor.java:241] [main] Processing chromosome C29758\r\n", "Processing chromosome C29758\r\n", "INFO [2014-03-08 06:24:34,399] [Preprocessor.java:241] [main] Processing chromosome C29764\r\n", "Processing chromosome C29764\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:34,419] [Preprocessor.java:241] [main] Processing chromosome C29766\r\n", "Processing chromosome C29766\r\n", "INFO [2014-03-08 06:24:34,442] [Preprocessor.java:241] [main] Processing chromosome C29768\r\n", "Processing chromosome C29768\r\n", "INFO [2014-03-08 06:24:34,450] [Preprocessor.java:241] [main] Processing chromosome C29774\r\n", "Processing chromosome C29774\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:34,470] [Preprocessor.java:241] [main] Processing chromosome C29784\r\n", "Processing chromosome C29784\r\n", "INFO [2014-03-08 06:24:34,494] [Preprocessor.java:241] [main] Processing chromosome C29786\r\n", "Processing chromosome C29786\r\n", "INFO [2014-03-08 06:24:34,501] [Preprocessor.java:241] [main] Processing chromosome C29788\r\n", "Processing chromosome C29788\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:34,520] [Preprocessor.java:241] [main] Processing chromosome C29798\r\n", "Processing chromosome C29798\r\n", "INFO [2014-03-08 06:24:34,560] [Preprocessor.java:241] [main] Processing chromosome C29820\r\n", "Processing chromosome C29820\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:34,567] [Preprocessor.java:241] [main] Processing chromosome C29848\r\n", "Processing chromosome C29848\r\n", "INFO [2014-03-08 06:24:34,579] [Preprocessor.java:241] [main] Processing chromosome C29854\r\n", "Processing chromosome C29854\r\n", "INFO [2014-03-08 06:24:34,583] [Preprocessor.java:241] [main] Processing chromosome C29876\r\n", "Processing chromosome C29876\r\n", "INFO [2014-03-08 06:24:34,600] [Preprocessor.java:241] [main] Processing chromosome C29878\r\n", "Processing chromosome C29878\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:34,638] [Preprocessor.java:241] [main] Processing chromosome C29882\r\n", "Processing chromosome C29882\r\n", "INFO [2014-03-08 06:24:34,656] [Preprocessor.java:241] [main] Processing chromosome C29898\r\n", "Processing chromosome C29898\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:34,673] [Preprocessor.java:241] [main] Processing chromosome C29902\r\n", "Processing chromosome C29902\r\n", "INFO [2014-03-08 06:24:34,705] [Preprocessor.java:241] [main] Processing chromosome C29904\r\n", "Processing chromosome C29904\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:34,723] [Preprocessor.java:241] [main] Processing chromosome C29908\r\n", "Processing chromosome C29908\r\n", "INFO [2014-03-08 06:24:34,734] [Preprocessor.java:241] [main] Processing chromosome C29914\r\n", "Processing chromosome C29914\r\n", "INFO [2014-03-08 06:24:34,741] [Preprocessor.java:241] [main] Processing chromosome C29928\r\n", "Processing chromosome C29928\r\n", "INFO [2014-03-08 06:24:34,749] [Preprocessor.java:241] [main] Processing chromosome C29936\r\n", "Processing chromosome C29936\r\n", "INFO [2014-03-08 06:24:34,765] [Preprocessor.java:241] [main] Processing chromosome C29942\r\n", "Processing chromosome C29942\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:34,808] [Preprocessor.java:241] [main] Processing chromosome C29946\r\n", "Processing chromosome C29946\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:34,825] [Preprocessor.java:241] [main] Processing chromosome C29950\r\n", "Processing chromosome C29950\r\n", "INFO [2014-03-08 06:24:34,835] [Preprocessor.java:241] [main] Processing chromosome C29954\r\n", "Processing chromosome C29954\r\n", "INFO [2014-03-08 06:24:34,865] [Preprocessor.java:241] [main] Processing chromosome C29956\r\n", "Processing chromosome C29956\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:34,900] [Preprocessor.java:241] [main] Processing chromosome C29958\r\n", "Processing chromosome C29958\r\n", "INFO [2014-03-08 06:24:34,927] [Preprocessor.java:241] [main] Processing chromosome C29960\r\n", "Processing chromosome C29960\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:34,972] [Preprocessor.java:241] [main] Processing chromosome C29966\r\n", "Processing chromosome C29966\r\n", "INFO [2014-03-08 06:24:34,981] [Preprocessor.java:241] [main] Processing chromosome C29968\r\n", "Processing chromosome C29968\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:35,001] [Preprocessor.java:241] [main] Processing chromosome C29970\r\n", "Processing chromosome C29970\r\n", "INFO [2014-03-08 06:24:35,017] [Preprocessor.java:241] [main] Processing chromosome C29974\r\n", "Processing chromosome C29974\r\n", "INFO [2014-03-08 06:24:35,029] [Preprocessor.java:241] [main] Processing chromosome C29976\r\n", "Processing chromosome C29976\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:35,040] [Preprocessor.java:241] [main] Processing chromosome C29980\r\n", "Processing chromosome C29980\r\n", "INFO [2014-03-08 06:24:35,050] [Preprocessor.java:241] [main] Processing chromosome C29986\r\n", "Processing chromosome C29986\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:35,088] [Preprocessor.java:241] [main] Processing chromosome C29988\r\n", "Processing chromosome C29988\r\n", "INFO [2014-03-08 06:24:35,104] [Preprocessor.java:241] [main] Processing chromosome C29992\r\n", "Processing chromosome C29992\r\n", "INFO [2014-03-08 06:24:35,110] [Preprocessor.java:241] [main] Processing chromosome C29994\r\n", "Processing chromosome C29994\r\n", "INFO [2014-03-08 06:24:35,127] [Preprocessor.java:241] [main] Processing chromosome C30002\r\n", "Processing chromosome C30002\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:35,141] [Preprocessor.java:241] [main] Processing chromosome C30012\r\n", "Processing chromosome C30012\r\n", "INFO [2014-03-08 06:24:35,149] [Preprocessor.java:241] [main] Processing chromosome C30022\r\n", "Processing chromosome C30022\r\n", "INFO [2014-03-08 06:24:35,156] [Preprocessor.java:241] [main] Processing chromosome C30038\r\n", "Processing chromosome C30038\r\n", "INFO [2014-03-08 06:24:35,171] [Preprocessor.java:241] [main] Processing chromosome C30040\r\n", "Processing chromosome C30040\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:35,202] [Preprocessor.java:241] [main] Processing chromosome C30042\r\n", "Processing chromosome C30042\r\n", "INFO [2014-03-08 06:24:35,210] [Preprocessor.java:241] [main] Processing chromosome C30044\r\n", "Processing chromosome C30044\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:35,240] [Preprocessor.java:241] [main] Processing chromosome C30046\r\n", "Processing chromosome C30046\r\n", "INFO [2014-03-08 06:24:35,283] [Preprocessor.java:241] [main] Processing chromosome C30058\r\n", "Processing chromosome C30058\r\n", "INFO [2014-03-08 06:24:35,290] [Preprocessor.java:241] [main] Processing chromosome C30060\r\n", "Processing chromosome C30060\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:35,305] [Preprocessor.java:241] [main] Processing chromosome C30072\r\n", "Processing chromosome C30072\r\n", "INFO [2014-03-08 06:24:35,315] [Preprocessor.java:241] [main] Processing chromosome C30084\r\n", "Processing chromosome C30084\r\n", "INFO [2014-03-08 06:24:35,332] [Preprocessor.java:241] [main] Processing chromosome C30100\r\n", "Processing chromosome C30100\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:35,342] [Preprocessor.java:241] [main] Processing chromosome C30110\r\n", "Processing chromosome C30110\r\n", "INFO [2014-03-08 06:24:35,351] [Preprocessor.java:241] [main] Processing chromosome C30118\r\n", "Processing chromosome C30118\r\n", "INFO [2014-03-08 06:24:35,371] [Preprocessor.java:241] [main] Processing chromosome C30120\r\n", "Processing chromosome C30120\r\n", "INFO [2014-03-08 06:24:35,382] [Preprocessor.java:241] [main] Processing chromosome C30124\r\n", "Processing chromosome C30124\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:35,437] [Preprocessor.java:241] [main] Processing chromosome C30126\r\n", "Processing chromosome C30126\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:35,477] [Preprocessor.java:241] [main] Processing chromosome C30130\r\n", "Processing chromosome C30130\r\n", "INFO [2014-03-08 06:24:35,489] [Preprocessor.java:241] [main] Processing chromosome C30140\r\n", "Processing chromosome C30140\r\n", "INFO [2014-03-08 06:24:35,494] [Preprocessor.java:241] [main] Processing chromosome C30144\r\n", "Processing chromosome C30144\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:35,521] [Preprocessor.java:241] [main] Processing chromosome C30162\r\n", "Processing chromosome C30162\r\n", "INFO [2014-03-08 06:24:35,535] [Preprocessor.java:241] [main] Processing chromosome C30166\r\n", "Processing chromosome C30166\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:35,568] [Preprocessor.java:241] [main] Processing chromosome C30176\r\n", "Processing chromosome C30176\r\n", "INFO [2014-03-08 06:24:35,573] [Preprocessor.java:241] [main] Processing chromosome C30178\r\n", "Processing chromosome C30178\r\n", "INFO [2014-03-08 06:24:35,590] [Preprocessor.java:241] [main] Processing chromosome C30186\r\n", "Processing chromosome C30186\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:35,630] [Preprocessor.java:241] [main] Processing chromosome C30188\r\n", "Processing chromosome C30188\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:35,653] [Preprocessor.java:241] [main] Processing chromosome C30206\r\n", "Processing chromosome C30206\r\n", "INFO [2014-03-08 06:24:35,700] [Preprocessor.java:241] [main] Processing chromosome C30216\r\n", "Processing chromosome C30216\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:35,747] [Preprocessor.java:241] [main] Processing chromosome C30224\r\n", "Processing chromosome C30224\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:35,761] [Preprocessor.java:241] [main] Processing chromosome C30226\r\n", "Processing chromosome C30226\r\n", "INFO [2014-03-08 06:24:35,782] [Preprocessor.java:241] [main] Processing chromosome C30232\r\n", "Processing chromosome C30232\r\n", "INFO [2014-03-08 06:24:35,787] [Preprocessor.java:241] [main] Processing chromosome C30238\r\n", "Processing chromosome C30238\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:35,818] [Preprocessor.java:241] [main] Processing chromosome C30240\r\n", "Processing chromosome C30240\r\n", "INFO [2014-03-08 06:24:35,843] [Preprocessor.java:241] [main] Processing chromosome C30252\r\n", "Processing chromosome C30252\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:35,868] [Preprocessor.java:241] [main] Processing chromosome C30258\r\n", "Processing chromosome C30258\r\n", "INFO [2014-03-08 06:24:35,889] [Preprocessor.java:241] [main] Processing chromosome C30260\r\n", "Processing chromosome C30260\r\n", "INFO [2014-03-08 06:24:35,899] [Preprocessor.java:241] [main] Processing chromosome C30262\r\n", "Processing chromosome C30262\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:35,942] [Preprocessor.java:241] [main] Processing chromosome C30282\r\n", "Processing chromosome C30282\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:35,968] [Preprocessor.java:241] [main] Processing chromosome C30292\r\n", "Processing chromosome C30292\r\n", "INFO [2014-03-08 06:24:35,983] [Preprocessor.java:241] [main] Processing chromosome C30294\r\n", "Processing chromosome C30294\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:36,017] [Preprocessor.java:241] [main] Processing chromosome C30296\r\n", "Processing chromosome C30296\r\n", "INFO [2014-03-08 06:24:36,056] [Preprocessor.java:241] [main] Processing chromosome C30300\r\n", "Processing chromosome C30300\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:36,082] [Preprocessor.java:241] [main] Processing chromosome C30322\r\n", "Processing chromosome C30322\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:36,119] [Preprocessor.java:241] [main] Processing chromosome C30324\r\n", "Processing chromosome C30324\r\n", "INFO [2014-03-08 06:24:36,132] [Preprocessor.java:241] [main] Processing chromosome C30332\r\n", "Processing chromosome C30332\r\n", "INFO [2014-03-08 06:24:36,146] [Preprocessor.java:241] [main] Processing chromosome C30336\r\n", "Processing chromosome C30336\r\n", "INFO [2014-03-08 06:24:36,162] [Preprocessor.java:241] [main] Processing chromosome C30340\r\n", "Processing chromosome C30340\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:36,214] [Preprocessor.java:241] [main] Processing chromosome C30344\r\n", "Processing chromosome C30344\r\n", "INFO [2014-03-08 06:24:36,220] [Preprocessor.java:241] [main] Processing chromosome C30354\r\n", "Processing chromosome C30354\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:36,223] [Preprocessor.java:241] [main] Processing chromosome C30356\r\n", "Processing chromosome C30356\r\n", "INFO [2014-03-08 06:24:36,252] [Preprocessor.java:241] [main] Processing chromosome C30362\r\n", "Processing chromosome C30362\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:36,282] [Preprocessor.java:241] [main] Processing chromosome C30368\r\n", "Processing chromosome C30368\r\n", "INFO [2014-03-08 06:24:36,285] [Preprocessor.java:241] [main] Processing chromosome C30398\r\n", "Processing chromosome C30398\r\n", "INFO [2014-03-08 06:24:36,290] [Preprocessor.java:241] [main] Processing chromosome C30414\r\n", "Processing chromosome C30414\r\n", "INFO [2014-03-08 06:24:36,324] [Preprocessor.java:241] [main] Processing chromosome C30426\r\n", "Processing chromosome C30426\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:36,358] [Preprocessor.java:241] [main] Processing chromosome C30430\r\n", "Processing chromosome C30430\r\n", "INFO [2014-03-08 06:24:36,372] [Preprocessor.java:241] [main] Processing chromosome C30434\r\n", "Processing chromosome C30434\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:36,398] [Preprocessor.java:241] [main] Processing chromosome C30444\r\n", "Processing chromosome C30444\r\n", "INFO [2014-03-08 06:24:36,409] [Preprocessor.java:241] [main] Processing chromosome C30458\r\n", "Processing chromosome C30458\r\n", "INFO [2014-03-08 06:24:36,425] [Preprocessor.java:241] [main] Processing chromosome C30460\r\n", "Processing chromosome C30460\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:36,455] [Preprocessor.java:241] [main] Processing chromosome C30472\r\n", "Processing chromosome C30472\r\n", "INFO [2014-03-08 06:24:36,496] [Preprocessor.java:241] [main] Processing chromosome C30476\r\n", "Processing chromosome C30476\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:36,543] [Preprocessor.java:241] [main] Processing chromosome C30482\r\n", "Processing chromosome C30482\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:36,552] [Preprocessor.java:241] [main] Processing chromosome C30496\r\n", "Processing chromosome C30496\r\n", "INFO [2014-03-08 06:24:36,587] [Preprocessor.java:241] [main] Processing chromosome C30498\r\n", "Processing chromosome C30498\r\n", "INFO [2014-03-08 06:24:36,596] [Preprocessor.java:241] [main] Processing chromosome C30500\r\n", "Processing chromosome C30500\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:36,625] [Preprocessor.java:241] [main] Processing chromosome C30504\r\n", "Processing chromosome C30504\r\n", "INFO [2014-03-08 06:24:36,645] [Preprocessor.java:241] [main] Processing chromosome C30506\r\n", "Processing chromosome C30506\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:36,682] [Preprocessor.java:241] [main] Processing chromosome C30508\r\n", "Processing chromosome C30508\r\n", "INFO [2014-03-08 06:24:36,708] [Preprocessor.java:241] [main] Processing chromosome C30514\r\n", "Processing chromosome C30514\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:36,774] [Preprocessor.java:241] [main] Processing chromosome C30522\r\n", "Processing chromosome C30522\r\n", "INFO [2014-03-08 06:24:36,787] [Preprocessor.java:241] [main] Processing chromosome C30526\r\n", "Processing chromosome C30526\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:36,823] [Preprocessor.java:241] [main] Processing chromosome C30534\r\n", "Processing chromosome C30534\r\n", "INFO [2014-03-08 06:24:36,850] [Preprocessor.java:241] [main] Processing chromosome C30538\r\n", "Processing chromosome C30538\r\n", "INFO [2014-03-08 06:24:36,855] [Preprocessor.java:241] [main] Processing chromosome C30542\r\n", "Processing chromosome C30542\r\n", "INFO [2014-03-08 06:24:36,861] [Preprocessor.java:241] [main] Processing chromosome C30560\r\n", "Processing chromosome C30560\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:36,882] [Preprocessor.java:241] [main] Processing chromosome C30566\r\n", "Processing chromosome C30566\r\n", "INFO [2014-03-08 06:24:36,915] [Preprocessor.java:241] [main] Processing chromosome C30570\r\n", "Processing chromosome C30570\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:36,976] [Preprocessor.java:241] [main] Processing chromosome C30576\r\n", "Processing chromosome C30576\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:36,984] [Preprocessor.java:241] [main] Processing chromosome C30582\r\n", "Processing chromosome C30582\r\n", "INFO [2014-03-08 06:24:36,998] [Preprocessor.java:241] [main] Processing chromosome C30584\r\n", "Processing chromosome C30584\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:37,041] [Preprocessor.java:241] [main] Processing chromosome C30592\r\n", "Processing chromosome C30592\r\n", "INFO [2014-03-08 06:24:37,078] [Preprocessor.java:241] [main] Processing chromosome C30608\r\n", "Processing chromosome C30608\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:37,115] [Preprocessor.java:241] [main] Processing chromosome C30620\r\n", "Processing chromosome C30620\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:37,141] [Preprocessor.java:241] [main] Processing chromosome C30622\r\n", "Processing chromosome C30622\r\n", "INFO [2014-03-08 06:24:37,165] [Preprocessor.java:241] [main] Processing chromosome C30632\r\n", "Processing chromosome C30632\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:37,205] [Preprocessor.java:241] [main] Processing chromosome C30662\r\n", "Processing chromosome C30662\r\n", "INFO [2014-03-08 06:24:37,217] [Preprocessor.java:241] [main] Processing chromosome C30668\r\n", "Processing chromosome C30668\r\n", "INFO [2014-03-08 06:24:37,227] [Preprocessor.java:241] [main] Processing chromosome C30680\r\n", "Processing chromosome C30680\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:37,256] [Preprocessor.java:241] [main] Processing chromosome C30694\r\n", "Processing chromosome C30694\r\n", "INFO [2014-03-08 06:24:37,274] [Preprocessor.java:241] [main] Processing chromosome C30708\r\n", "Processing chromosome C30708\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:37,299] [Preprocessor.java:241] [main] Processing chromosome C30724\r\n", "Processing chromosome C30724\r\n", "INFO [2014-03-08 06:24:37,337] [Preprocessor.java:241] [main] Processing chromosome C30728\r\n", "Processing chromosome C30728\r\n", "INFO [2014-03-08 06:24:37,346] [Preprocessor.java:241] [main] Processing chromosome C30736\r\n", "Processing chromosome C30736\r\n", "INFO [2014-03-08 06:24:37,356] [Preprocessor.java:241] [main] Processing chromosome C30746\r\n", "Processing chromosome C30746\r\n", "INFO [2014-03-08 06:24:37,362] [Preprocessor.java:241] [main] Processing chromosome C30752\r\n", "Processing chromosome C30752\r\n", "INFO [2014-03-08 06:24:37,365] [Preprocessor.java:241] [main] Processing chromosome C30754\r\n", "Processing chromosome C30754\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:37,412] [Preprocessor.java:241] [main] Processing chromosome C30756\r\n", "Processing chromosome C30756\r\n", "INFO [2014-03-08 06:24:37,418] [Preprocessor.java:241] [main] Processing chromosome C30766\r\n", "Processing chromosome C30766\r\n", "INFO [2014-03-08 06:24:37,422] [Preprocessor.java:241] [main] Processing chromosome C30768\r\n", "Processing chromosome C30768\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:37,441] [Preprocessor.java:241] [main] Processing chromosome C30770\r\n", "Processing chromosome C30770\r\n", "INFO [2014-03-08 06:24:37,448] [Preprocessor.java:241] [main] Processing chromosome C30792\r\n", "Processing chromosome C30792\r\n", "INFO [2014-03-08 06:24:37,462] [Preprocessor.java:241] [main] Processing chromosome C30796\r\n", "Processing chromosome C30796\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:37,520] [Preprocessor.java:241] [main] Processing chromosome C30800\r\n", "Processing chromosome C30800\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:37,564] [Preprocessor.java:241] [main] Processing chromosome C30802\r\n", "Processing chromosome C30802\r\n", "INFO [2014-03-08 06:24:37,577] [Preprocessor.java:241] [main] Processing chromosome C30804\r\n", "Processing chromosome C30804\r\n", "INFO [2014-03-08 06:24:37,584] [Preprocessor.java:241] [main] Processing chromosome C30806\r\n", "Processing chromosome C30806\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:37,614] [Preprocessor.java:241] [main] Processing chromosome C30816\r\n", "Processing chromosome C30816\r\n", "INFO [2014-03-08 06:24:37,648] [Preprocessor.java:241] [main] Processing chromosome C30820\r\n", "Processing chromosome C30820\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:37,655] [Preprocessor.java:241] [main] Processing chromosome C30832\r\n", "Processing chromosome C30832\r\n", "INFO [2014-03-08 06:24:37,661] [Preprocessor.java:241] [main] Processing chromosome C30848\r\n", "Processing chromosome C30848\r\n", "INFO [2014-03-08 06:24:37,691] [Preprocessor.java:241] [main] Processing chromosome C30852\r\n", "Processing chromosome C30852\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:37,764] [Preprocessor.java:241] [main] Processing chromosome C30862\r\n", "Processing chromosome C30862\r\n", "INFO [2014-03-08 06:24:37,802] [Preprocessor.java:241] [main] Processing chromosome C30870\r\n", "Processing chromosome C30870\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:37,816] [Preprocessor.java:241] [main] Processing chromosome C30872\r\n", "Processing chromosome C30872\r\n", "INFO [2014-03-08 06:24:37,837] [Preprocessor.java:241] [main] Processing chromosome C30874\r\n", "Processing chromosome C30874\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:37,871] [Preprocessor.java:241] [main] Processing chromosome C30882\r\n", "Processing chromosome C30882\r\n", "INFO [2014-03-08 06:24:37,878] [Preprocessor.java:241] [main] Processing chromosome C30886\r\n", "Processing chromosome C30886\r\n", "INFO [2014-03-08 06:24:37,886] [Preprocessor.java:241] [main] Processing chromosome C30898\r\n", "Processing chromosome C30898\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:37,930] [Preprocessor.java:241] [main] Processing chromosome C30904\r\n", "Processing chromosome C30904\r\n", "INFO [2014-03-08 06:24:37,932] [Preprocessor.java:241] [main] Processing chromosome C30908\r\n", "Processing chromosome C30908\r\n", "INFO [2014-03-08 06:24:37,952] [Preprocessor.java:241] [main] Processing chromosome C30924\r\n", "Processing chromosome C30924\r\n", "INFO [2014-03-08 06:24:37,966] [Preprocessor.java:241] [main] Processing chromosome C30946\r\n", "Processing chromosome C30946\r\n", "INFO [2014-03-08 06:24:38,015] [Preprocessor.java:241] [main] Processing chromosome C30954\r\n", "Processing chromosome C30954\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:38,086] [Preprocessor.java:241] [main] Processing chromosome C30956\r\n", "Processing chromosome C30956\r\n", "INFO [2014-03-08 06:24:38,097] [Preprocessor.java:241] [main] Processing chromosome C30958\r\n", "Processing chromosome C30958\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:38,140] [Preprocessor.java:241] [main] Processing chromosome C30966\r\n", "Processing chromosome C30966\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:38,175] [Preprocessor.java:241] [main] Processing chromosome C30974\r\n", "Processing chromosome C30974\r\n", "INFO [2014-03-08 06:24:38,204] [Preprocessor.java:241] [main] Processing chromosome C30980\r\n", "Processing chromosome C30980\r\n", "INFO [2014-03-08 06:24:38,208] [Preprocessor.java:241] [main] Processing chromosome C30982\r\n", "Processing chromosome C30982\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:38,223] [Preprocessor.java:241] [main] Processing chromosome C30988\r\n", "Processing chromosome C30988\r\n", "INFO [2014-03-08 06:24:38,236] [Preprocessor.java:241] [main] Processing chromosome C30994\r\n", "Processing chromosome C30994\r\n", "INFO [2014-03-08 06:24:38,259] [Preprocessor.java:241] [main] Processing chromosome C30998\r\n", "Processing chromosome C30998\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:38,281] [Preprocessor.java:241] [main] Processing chromosome C31004\r\n", "Processing chromosome C31004\r\n", "INFO [2014-03-08 06:24:38,311] [Preprocessor.java:241] [main] Processing chromosome C31012\r\n", "Processing chromosome C31012\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:38,356] [Preprocessor.java:241] [main] Processing chromosome C31020\r\n", "Processing chromosome C31020\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:38,388] [Preprocessor.java:241] [main] Processing chromosome C31022\r\n", "Processing chromosome C31022\r\n", "INFO [2014-03-08 06:24:38,393] [Preprocessor.java:241] [main] Processing chromosome C31036\r\n", "Processing chromosome C31036\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:38,448] [Preprocessor.java:241] [main] Processing chromosome C31056\r\n", "Processing chromosome C31056\r\n", "INFO [2014-03-08 06:24:38,474] [Preprocessor.java:241] [main] Processing chromosome C31060\r\n", "Processing chromosome C31060\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:38,519] [Preprocessor.java:241] [main] Processing chromosome C31062\r\n", "Processing chromosome C31062\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:38,533] [Preprocessor.java:241] [main] Processing chromosome C31070\r\n", "Processing chromosome C31070\r\n", "INFO [2014-03-08 06:24:38,574] [Preprocessor.java:241] [main] Processing chromosome C31072\r\n", "Processing chromosome C31072\r\n", "INFO [2014-03-08 06:24:38,580] [Preprocessor.java:241] [main] Processing chromosome C31096\r\n", "Processing chromosome C31096\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:38,640] [Preprocessor.java:241] [main] Processing chromosome C31104\r\n", "Processing chromosome C31104\r\n", "INFO [2014-03-08 06:24:38,644] [Preprocessor.java:241] [main] Processing chromosome C31106\r\n", "Processing chromosome C31106\r\n", "INFO [2014-03-08 06:24:38,676] [Preprocessor.java:241] [main] Processing chromosome C31130\r\n", "Processing chromosome C31130\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:38,710] [Preprocessor.java:241] [main] Processing chromosome C31132\r\n", "Processing chromosome C31132\r\n", "INFO [2014-03-08 06:24:38,735] [Preprocessor.java:241] [main] Processing chromosome C31144\r\n", "Processing chromosome C31144\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:38,742] [Preprocessor.java:241] [main] Processing chromosome C31156\r\n", "Processing chromosome C31156\r\n", "INFO [2014-03-08 06:24:38,753] [Preprocessor.java:241] [main] Processing chromosome C3117\r\n", "Processing chromosome C3117\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:38,829] [Preprocessor.java:241] [main] Processing chromosome C31176\r\n", "Processing chromosome C31176\r\n", "INFO [2014-03-08 06:24:38,838] [Preprocessor.java:241] [main] Processing chromosome C31202\r\n", "Processing chromosome C31202\r\n", "INFO [2014-03-08 06:24:38,843] [Preprocessor.java:241] [main] Processing chromosome C31242\r\n", "Processing chromosome C31242\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:38,852] [Preprocessor.java:241] [main] Processing chromosome C31246\r\n", "Processing chromosome C31246\r\n", "INFO [2014-03-08 06:24:38,856] [Preprocessor.java:241] [main] Processing chromosome C31256\r\n", "Processing chromosome C31256\r\n", "INFO [2014-03-08 06:24:38,888] [Preprocessor.java:241] [main] Processing chromosome C31260\r\n", "Processing chromosome C31260\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:38,916] [Preprocessor.java:241] [main] Processing chromosome C31262\r\n", "Processing chromosome C31262\r\n", "INFO [2014-03-08 06:24:38,931] [Preprocessor.java:241] [main] Processing chromosome C31264\r\n", "Processing chromosome C31264\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:38,956] [Preprocessor.java:241] [main] Processing chromosome C31270\r\n", "Processing chromosome C31270\r\n", "INFO [2014-03-08 06:24:38,969] [Preprocessor.java:241] [main] Processing chromosome C31278\r\n", "Processing chromosome C31278\r\n", "INFO [2014-03-08 06:24:38,980] [Preprocessor.java:241] [main] Processing chromosome C31292\r\n", "Processing chromosome C31292\r\n", "INFO [2014-03-08 06:24:38,997] [Preprocessor.java:241] [main] Processing chromosome C31300\r\n", "Processing chromosome C31300\r\n", "INFO [2014-03-08 06:24:38,999] [Preprocessor.java:241] [main] Processing chromosome C31304\r\n", "Processing chromosome C31304\r\n", "INFO [2014-03-08 06:24:39,004] [Preprocessor.java:241] [main] Processing chromosome C31322\r\n", "Processing chromosome C31322\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:39,018] [Preprocessor.java:241] [main] Processing chromosome C31324\r\n", "Processing chromosome C31324\r\n", "INFO [2014-03-08 06:24:39,032] [Preprocessor.java:241] [main] Processing chromosome C31336\r\n", "Processing chromosome C31336\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:39,064] [Preprocessor.java:241] [main] Processing chromosome C31340\r\n", "Processing chromosome C31340\r\n", "INFO [2014-03-08 06:24:39,080] [Preprocessor.java:241] [main] Processing chromosome C31346\r\n", "Processing chromosome C31346\r\n", "INFO [2014-03-08 06:24:39,088] [Preprocessor.java:241] [main] Processing chromosome C31354\r\n", "Processing chromosome C31354\r\n", "INFO [2014-03-08 06:24:39,097] [Preprocessor.java:241] [main] Processing chromosome C31366\r\n", "Processing chromosome C31366\r\n", "INFO [2014-03-08 06:24:39,102] [Preprocessor.java:241] [main] Processing chromosome C3137\r\n", "Processing chromosome C3137\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:39,143] [Preprocessor.java:241] [main] Processing chromosome C31370\r\n", "Processing chromosome C31370\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:39,213] [Preprocessor.java:241] [main] Processing chromosome C31380\r\n", "Processing chromosome C31380\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:39,248] [Preprocessor.java:241] [main] Processing chromosome C31386\r\n", "Processing chromosome C31386\r\n", "INFO [2014-03-08 06:24:39,253] [Preprocessor.java:241] [main] Processing chromosome C31390\r\n", "Processing chromosome C31390\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:39,277] [Preprocessor.java:241] [main] Processing chromosome C31396\r\n", "Processing chromosome C31396\r\n", "INFO [2014-03-08 06:24:39,301] [Preprocessor.java:241] [main] Processing chromosome C31398\r\n", "Processing chromosome C31398\r\n", "INFO [2014-03-08 06:24:39,310] [Preprocessor.java:241] [main] Processing chromosome C31400\r\n", "Processing chromosome C31400\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:39,352] [Preprocessor.java:241] [main] Processing chromosome C31408\r\n", "Processing chromosome C31408\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:39,385] [Preprocessor.java:241] [main] Processing chromosome C31410\r\n", "Processing chromosome C31410\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:39,436] [Preprocessor.java:241] [main] Processing chromosome C31414\r\n", "Processing chromosome C31414\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:39,497] [Preprocessor.java:241] [main] Processing chromosome C31442\r\n", "Processing chromosome C31442\r\n", "INFO [2014-03-08 06:24:39,508] [Preprocessor.java:241] [main] Processing chromosome C31446\r\n", "Processing chromosome C31446\r\n", "INFO [2014-03-08 06:24:39,511] [Preprocessor.java:241] [main] Processing chromosome C3145\r\n", "Processing chromosome C3145\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:40,019] [Preprocessor.java:241] [main] Processing chromosome C31458\r\n", "Processing chromosome C31458\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:40,083] [Preprocessor.java:241] [main] Processing chromosome C31460\r\n", "Processing chromosome C31460\r\n", "INFO [2014-03-08 06:24:40,107] [Preprocessor.java:241] [main] Processing chromosome C31466\r\n", "Processing chromosome C31466\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:40,240] [Preprocessor.java:241] [main] Processing chromosome C31482\r\n", "Processing chromosome C31482\r\n", "INFO [2014-03-08 06:24:40,248] [Preprocessor.java:241] [main] Processing chromosome C31486\r\n", "Processing chromosome C31486\r\n", "INFO [2014-03-08 06:24:40,275] [Preprocessor.java:241] [main] Processing chromosome C31488\r\n", "Processing chromosome C31488\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:40,344] [Preprocessor.java:241] [main] Processing chromosome C31500\r\n", "Processing chromosome C31500\r\n", "INFO [2014-03-08 06:24:40,359] [Preprocessor.java:241] [main] Processing chromosome C31504\r\n", "Processing chromosome C31504\r\n", "INFO [2014-03-08 06:24:40,385] [Preprocessor.java:241] [main] Processing chromosome C3151\r\n", "Processing chromosome C3151\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:40,455] [Preprocessor.java:241] [main] Processing chromosome C31510\r\n", "Processing chromosome C31510\r\n", "INFO [2014-03-08 06:24:40,466] [Preprocessor.java:241] [main] Processing chromosome C31526\r\n", "Processing chromosome C31526\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:40,497] [Preprocessor.java:241] [main] Processing chromosome C3153\r\n", "Processing chromosome C3153\r\n", "INFO [2014-03-08 06:24:40,539] [Preprocessor.java:241] [main] Processing chromosome C31542\r\n", "Processing chromosome C31542\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:40,575] [Preprocessor.java:241] [main] Processing chromosome C31546\r\n", "Processing chromosome C31546\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:40,601] [Preprocessor.java:241] [main] Processing chromosome C31564\r\n", "Processing chromosome C31564\r\n", "INFO [2014-03-08 06:24:40,626] [Preprocessor.java:241] [main] Processing chromosome C31572\r\n", "Processing chromosome C31572\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:40,658] [Preprocessor.java:241] [main] Processing chromosome C31574\r\n", "Processing chromosome C31574\r\n", "INFO [2014-03-08 06:24:40,672] [Preprocessor.java:241] [main] Processing chromosome C31584\r\n", "Processing chromosome C31584\r\n", "INFO [2014-03-08 06:24:40,694] [Preprocessor.java:241] [main] Processing chromosome C31590\r\n", "Processing chromosome C31590\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:40,710] [Preprocessor.java:241] [main] Processing chromosome C31602\r\n", "Processing chromosome C31602\r\n", "INFO [2014-03-08 06:24:40,720] [Preprocessor.java:241] [main] Processing chromosome C31626\r\n", "Processing chromosome C31626\r\n", "INFO [2014-03-08 06:24:40,727] [Preprocessor.java:241] [main] Processing chromosome C31630\r\n", "Processing chromosome C31630\r\n", "INFO [2014-03-08 06:24:40,737] [Preprocessor.java:241] [main] Processing chromosome C31632\r\n", "Processing chromosome C31632\r\n", "INFO [2014-03-08 06:24:40,752] [Preprocessor.java:241] [main] Processing chromosome C31644\r\n", "Processing chromosome C31644\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:40,904] [Preprocessor.java:241] [main] Processing chromosome C31654\r\n", "Processing chromosome C31654\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:40,939] [Preprocessor.java:241] [main] Processing chromosome C31668\r\n", "Processing chromosome C31668\r\n", "INFO [2014-03-08 06:24:40,948] [Preprocessor.java:241] [main] Processing chromosome C31694\r\n", "Processing chromosome C31694\r\n", "INFO [2014-03-08 06:24:40,968] [Preprocessor.java:241] [main] Processing chromosome C31698\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "Processing chromosome C31698\r\n", "INFO [2014-03-08 06:24:41,008] [Preprocessor.java:241] [main] Processing chromosome C31706\r\n", "Processing chromosome C31706\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:41,091] [Preprocessor.java:241] [main] Processing chromosome C31714\r\n", "Processing chromosome C31714\r\n", "INFO [2014-03-08 06:24:41,116] [Preprocessor.java:241] [main] Processing chromosome C31724\r\n", "Processing chromosome C31724\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:41,146] [Preprocessor.java:241] [main] Processing chromosome C31730\r\n", "Processing chromosome C31730\r\n", "INFO [2014-03-08 06:24:41,167] [Preprocessor.java:241] [main] Processing chromosome C31738\r\n", "Processing chromosome C31738\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:41,193] [Preprocessor.java:241] [main] Processing chromosome C31746\r\n", "Processing chromosome C31746\r\n", "INFO [2014-03-08 06:24:41,217] [Preprocessor.java:241] [main] Processing chromosome C31762\r\n", "Processing chromosome C31762\r\n", "INFO [2014-03-08 06:24:41,226] [Preprocessor.java:241] [main] Processing chromosome C31776\r\n", "Processing chromosome C31776\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:41,236] [Preprocessor.java:241] [main] Processing chromosome C31778\r\n", "Processing chromosome C31778\r\n", "INFO [2014-03-08 06:24:41,267] [Preprocessor.java:241] [main] Processing chromosome C3179\r\n", "Processing chromosome C3179\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:41,324] [Preprocessor.java:241] [main] Processing chromosome C31806\r\n", "Processing chromosome C31806\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:41,371] [Preprocessor.java:241] [main] Processing chromosome C31808\r\n", "Processing chromosome C31808\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:41,420] [Preprocessor.java:241] [main] Processing chromosome C31814\r\n", "Processing chromosome C31814\r\n", "INFO [2014-03-08 06:24:41,429] [Preprocessor.java:241] [main] Processing chromosome C31828\r\n", "Processing chromosome C31828\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:41,448] [Preprocessor.java:241] [main] Processing chromosome C3183\r\n", "Processing chromosome C3183\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:41,545] [Preprocessor.java:241] [main] Processing chromosome C31832\r\n", "Processing chromosome C31832\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:41,564] [Preprocessor.java:241] [main] Processing chromosome C31838\r\n", "Processing chromosome C31838\r\n", "INFO [2014-03-08 06:24:41,579] [Preprocessor.java:241] [main] Processing chromosome C31840\r\n", "Processing chromosome C31840\r\n", "INFO [2014-03-08 06:24:41,589] [Preprocessor.java:241] [main] Processing chromosome C31846\r\n", "Processing chromosome C31846\r\n", "INFO [2014-03-08 06:24:41,598] [Preprocessor.java:241] [main] Processing chromosome C31876\r\n", "Processing chromosome C31876\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:41,606] [Preprocessor.java:241] [main] Processing chromosome C31882\r\n", "Processing chromosome C31882\r\n", "INFO [2014-03-08 06:24:41,627] [Preprocessor.java:241] [main] Processing chromosome C31884\r\n", "Processing chromosome C31884\r\n", "INFO [2014-03-08 06:24:41,631] [Preprocessor.java:241] [main] Processing chromosome C31896\r\n", "Processing chromosome C31896\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:41,676] [Preprocessor.java:241] [main] Processing chromosome C31902\r\n", "Processing chromosome C31902\r\n", "INFO [2014-03-08 06:24:41,689] [Preprocessor.java:241] [main] Processing chromosome C31910\r\n", "Processing chromosome C31910\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:41,708] [Preprocessor.java:241] [main] Processing chromosome C31912\r\n", "Processing chromosome C31912\r\n", "INFO [2014-03-08 06:24:41,721] [Preprocessor.java:241] [main] Processing chromosome C31940\r\n", "Processing chromosome C31940\r\n", "INFO [2014-03-08 06:24:41,741] [Preprocessor.java:241] [main] Processing chromosome C31952\r\n", "Processing chromosome C31952\r\n", "INFO [2014-03-08 06:24:41,743] [Preprocessor.java:241] [main] Processing chromosome C31964\r\n", "Processing chromosome C31964\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:41,778] [Preprocessor.java:241] [main] Processing chromosome C3197\r\n", "Processing chromosome C3197\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:41,849] [Preprocessor.java:241] [main] Processing chromosome C31978\r\n", "Processing chromosome C31978\r\n", "INFO [2014-03-08 06:24:41,857] [Preprocessor.java:241] [main] Processing chromosome C31982\r\n", "Processing chromosome C31982\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:41,864] [Preprocessor.java:241] [main] Processing chromosome C31986\r\n", "Processing chromosome C31986\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:41,919] [Preprocessor.java:241] [main] Processing chromosome C31988\r\n", "Processing chromosome C31988\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:41,979] [Preprocessor.java:241] [main] Processing chromosome C31996\r\n", "Processing chromosome C31996\r\n", "INFO [2014-03-08 06:24:42,002] [Preprocessor.java:241] [main] Processing chromosome C32002\r\n", "Processing chromosome C32002\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:42,027] [Preprocessor.java:241] [main] Processing chromosome C32006\r\n", "Processing chromosome C32006\r\n", "INFO [2014-03-08 06:24:42,037] [Preprocessor.java:241] [main] Processing chromosome C32026\r\n", "Processing chromosome C32026\r\n", "INFO [2014-03-08 06:24:42,046] [Preprocessor.java:241] [main] Processing chromosome C32028\r\n", "Processing chromosome C32028\r\n", "INFO [2014-03-08 06:24:42,053] [Preprocessor.java:241] [main] Processing chromosome C32054\r\n", "Processing chromosome C32054\r\n", "INFO [2014-03-08 06:24:42,059] [Preprocessor.java:241] [main] Processing chromosome C32056\r\n", "Processing chromosome C32056\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:42,086] [Preprocessor.java:241] [main] Processing chromosome C32082\r\n", "Processing chromosome C32082\r\n", "INFO [2014-03-08 06:24:42,121] [Preprocessor.java:241] [main] Processing chromosome C32084\r\n", "Processing chromosome C32084\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:42,191] [Preprocessor.java:241] [main] Processing chromosome C32088\r\n", "Processing chromosome C32088\r\n", "INFO [2014-03-08 06:24:42,197] [Preprocessor.java:241] [main] Processing chromosome C32098\r\n", "Processing chromosome C32098\r\n", "INFO [2014-03-08 06:24:42,214] [Preprocessor.java:241] [main] Processing chromosome C32106\r\n", "Processing chromosome C32106\r\n", "INFO [2014-03-08 06:24:42,223] [Preprocessor.java:241] [main] Processing chromosome C32108\r\n", "Processing chromosome C32108\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:42,231] [Preprocessor.java:241] [main] Processing chromosome C32110\r\n", "Processing chromosome C32110\r\n", "INFO [2014-03-08 06:24:42,263] [Preprocessor.java:241] [main] Processing chromosome C32122\r\n", "Processing chromosome C32122\r\n", "INFO [2014-03-08 06:24:42,273] [Preprocessor.java:241] [main] Processing chromosome C32130\r\n", "Processing chromosome C32130\r\n", "INFO [2014-03-08 06:24:42,275] [Preprocessor.java:241] [main] Processing chromosome C32136\r\n", "Processing chromosome C32136\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:42,298] [Preprocessor.java:241] [main] Processing chromosome C32150\r\n", "Processing chromosome C32150\r\n", "INFO [2014-03-08 06:24:42,303] [Preprocessor.java:241] [main] Processing chromosome C32156\r\n", "Processing chromosome C32156\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:42,381] [Preprocessor.java:241] [main] Processing chromosome C32176\r\n", "Processing chromosome C32176\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:42,397] [Preprocessor.java:241] [main] Processing chromosome C32184\r\n", "Processing chromosome C32184\r\n", "INFO [2014-03-08 06:24:42,424] [Preprocessor.java:241] [main] Processing chromosome C32186\r\n", "Processing chromosome C32186\r\n", "INFO [2014-03-08 06:24:42,431] [Preprocessor.java:241] [main] Processing chromosome C32196\r\n", "Processing chromosome C32196\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:42,477] [Preprocessor.java:241] [main] Processing chromosome C32216\r\n", "Processing chromosome C32216\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:42,663] [Preprocessor.java:241] [main] Processing chromosome C32222\r\n", "Processing chromosome C32222\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:42,722] [Preprocessor.java:241] [main] Processing chromosome C32224\r\n", "Processing chromosome C32224\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:42,765] [Preprocessor.java:241] [main] Processing chromosome C32228\r\n", "Processing chromosome C32228\r\n", "INFO [2014-03-08 06:24:42,782] [Preprocessor.java:241] [main] Processing chromosome C32240\r\n", "Processing chromosome C32240\r\n", "INFO [2014-03-08 06:24:42,805] [Preprocessor.java:241] [main] Processing chromosome C32242\r\n", "Processing chromosome C32242\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:42,815] [Preprocessor.java:241] [main] Processing chromosome C32246\r\n", "Processing chromosome C32246\r\n", "INFO [2014-03-08 06:24:42,858] [Preprocessor.java:241] [main] Processing chromosome C32260\r\n", "Processing chromosome C32260\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:42,909] [Preprocessor.java:241] [main] Processing chromosome C32264\r\n", "Processing chromosome C32264\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:42,947] [Preprocessor.java:241] [main] Processing chromosome C32270\r\n", "Processing chromosome C32270\r\n", "INFO [2014-03-08 06:24:42,971] [Preprocessor.java:241] [main] Processing chromosome C32272\r\n", "Processing chromosome C32272\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:42,993] [Preprocessor.java:241] [main] Processing chromosome C32276\r\n", "Processing chromosome C32276\r\n", "INFO [2014-03-08 06:24:43,026] [Preprocessor.java:241] [main] Processing chromosome C32278\r\n", "Processing chromosome C32278\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:43,035] [Preprocessor.java:241] [main] Processing chromosome C32292\r\n", "Processing chromosome C32292\r\n", "INFO [2014-03-08 06:24:43,075] [Preprocessor.java:241] [main] Processing chromosome C3231\r\n", "Processing chromosome C3231\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:43,213] [Preprocessor.java:241] [main] Processing chromosome C32314\r\n", "Processing chromosome C32314\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:43,256] [Preprocessor.java:241] [main] Processing chromosome C32318\r\n", "Processing chromosome C32318\r\n", "INFO [2014-03-08 06:24:43,265] [Preprocessor.java:241] [main] Processing chromosome C32328\r\n", "Processing chromosome C32328\r\n", "INFO [2014-03-08 06:24:43,281] [Preprocessor.java:241] [main] Processing chromosome C32340\r\n", "Processing chromosome C32340\r\n", "INFO [2014-03-08 06:24:43,285] [Preprocessor.java:241] [main] Processing chromosome C32382\r\n", "Processing chromosome C32382\r\n", "INFO [2014-03-08 06:24:43,287] [Preprocessor.java:241] [main] Processing chromosome C32390\r\n", "Processing chromosome C32390\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:43,299] [Preprocessor.java:241] [main] Processing chromosome C32398\r\n", "Processing chromosome C32398\r\n", "INFO [2014-03-08 06:24:43,315] [Preprocessor.java:241] [main] Processing chromosome C32402\r\n", "Processing chromosome C32402\r\n", "INFO [2014-03-08 06:24:43,346] [Preprocessor.java:241] [main] Processing chromosome C32406\r\n", "Processing chromosome C32406\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:43,377] [Preprocessor.java:241] [main] Processing chromosome C32424\r\n", "Processing chromosome C32424\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:43,431] [Preprocessor.java:241] [main] Processing chromosome C32426\r\n", "Processing chromosome C32426\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:43,474] [Preprocessor.java:241] [main] Processing chromosome C32438\r\n", "Processing chromosome C32438\r\n", "INFO [2014-03-08 06:24:43,488] [Preprocessor.java:241] [main] Processing chromosome C32444\r\n", "Processing chromosome C32444\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:43,532] [Preprocessor.java:241] [main] Processing chromosome C32458\r\n", "Processing chromosome C32458\r\n", "INFO [2014-03-08 06:24:43,536] [Preprocessor.java:241] [main] Processing chromosome C32468\r\n", "Processing chromosome C32468\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:43,599] [Preprocessor.java:241] [main] Processing chromosome C32472\r\n", "Processing chromosome C32472\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:43,624] [Preprocessor.java:241] [main] Processing chromosome C32482\r\n", "Processing chromosome C32482\r\n", "INFO [2014-03-08 06:24:43,654] [Preprocessor.java:241] [main] Processing chromosome C32484\r\n", "Processing chromosome C32484\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:43,691] [Preprocessor.java:241] [main] Processing chromosome C3249\r\n", "Processing chromosome C3249\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:43,764] [Preprocessor.java:241] [main] Processing chromosome C32512\r\n", "Processing chromosome C32512\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:43,811] [Preprocessor.java:241] [main] Processing chromosome C32516\r\n", "Processing chromosome C32516\r\n", "INFO [2014-03-08 06:24:43,828] [Preprocessor.java:241] [main] Processing chromosome C32532\r\n", "Processing chromosome C32532\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:43,855] [Preprocessor.java:241] [main] Processing chromosome C32536\r\n", "Processing chromosome C32536\r\n", "INFO [2014-03-08 06:24:43,874] [Preprocessor.java:241] [main] Processing chromosome C32542\r\n", "Processing chromosome C32542\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:43,897] [Preprocessor.java:241] [main] Processing chromosome C32552\r\n", "Processing chromosome C32552\r\n", "INFO [2014-03-08 06:24:43,936] [Preprocessor.java:241] [main] Processing chromosome C32554\r\n", "Processing chromosome C32554\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:43,959] [Preprocessor.java:241] [main] Processing chromosome C32568\r\n", "Processing chromosome C32568\r\n", "INFO [2014-03-08 06:24:43,988] [Preprocessor.java:241] [main] Processing chromosome C32576\r\n", "Processing chromosome C32576\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:44,007] [Preprocessor.java:241] [main] Processing chromosome C32578\r\n", "Processing chromosome C32578\r\n", "INFO [2014-03-08 06:24:44,029] [Preprocessor.java:241] [main] Processing chromosome C32582\r\n", "Processing chromosome C32582\r\n", "INFO [2014-03-08 06:24:44,033] [Preprocessor.java:241] [main] Processing chromosome C32596\r\n", "Processing chromosome C32596\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:44,063] [Preprocessor.java:241] [main] Processing chromosome C32606\r\n", "Processing chromosome C32606\r\n", "INFO [2014-03-08 06:24:44,097] [Preprocessor.java:241] [main] Processing chromosome C3261\r\n", "Processing chromosome C3261\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:44,229] [Preprocessor.java:241] [main] Processing chromosome C32614\r\n", "Processing chromosome C32614\r\n", "INFO [2014-03-08 06:24:44,252] [Preprocessor.java:241] [main] Processing chromosome C32636\r\n", "Processing chromosome C32636\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:44,297] [Preprocessor.java:241] [main] Processing chromosome C32644\r\n", "Processing chromosome C32644\r\n", "INFO [2014-03-08 06:24:44,311] [Preprocessor.java:241] [main] Processing chromosome C32654\r\n", "Processing chromosome C32654\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:44,358] [Preprocessor.java:241] [main] Processing chromosome C32656\r\n", "Processing chromosome C32656\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:44,430] [Preprocessor.java:241] [main] Processing chromosome C32660\r\n", "Processing chromosome C32660\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:44,479] [Preprocessor.java:241] [main] Processing chromosome C32674\r\n", "Processing chromosome C32674\r\n", "INFO [2014-03-08 06:24:44,487] [Preprocessor.java:241] [main] Processing chromosome C32682\r\n", "Processing chromosome C32682\r\n", "INFO [2014-03-08 06:24:44,501] [Preprocessor.java:241] [main] Processing chromosome C32694\r\n", "Processing chromosome C32694\r\n", "INFO [2014-03-08 06:24:44,517] [Preprocessor.java:241] [main] Processing chromosome C32714\r\n", "Processing chromosome C32714\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:44,564] [Preprocessor.java:241] [main] Processing chromosome C32728\r\n", "Processing chromosome C32728\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:44,573] [Preprocessor.java:241] [main] Processing chromosome C32748\r\n", "Processing chromosome C32748\r\n", "INFO [2014-03-08 06:24:44,578] [Preprocessor.java:241] [main] Processing chromosome C32772\r\n", "Processing chromosome C32772\r\n", "INFO [2014-03-08 06:24:44,580] [Preprocessor.java:241] [main] Processing chromosome C32774\r\n", "Processing chromosome C32774\r\n", "INFO [2014-03-08 06:24:44,613] [Preprocessor.java:241] [main] Processing chromosome C32778\r\n", "Processing chromosome C32778\r\n", "INFO [2014-03-08 06:24:44,621] [Preprocessor.java:241] [main] Processing chromosome C32794\r\n", "Processing chromosome C32794\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:44,625] [Preprocessor.java:241] [main] Processing chromosome C32810\r\n", "Processing chromosome C32810\r\n", "INFO [2014-03-08 06:24:44,645] [Preprocessor.java:241] [main] Processing chromosome C32812\r\n", "Processing chromosome C32812\r\n", "INFO [2014-03-08 06:24:44,665] [Preprocessor.java:241] [main] Processing chromosome C32814\r\n", "Processing chromosome C32814\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:44,707] [Preprocessor.java:241] [main] Processing chromosome C32818\r\n", "Processing chromosome C32818\r\n", "INFO [2014-03-08 06:24:44,714] [Preprocessor.java:241] [main] Processing chromosome C32838\r\n", "Processing chromosome C32838\r\n", "INFO [2014-03-08 06:24:44,720] [Preprocessor.java:241] [main] Processing chromosome C32842\r\n", "Processing chromosome C32842\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:44,737] [Preprocessor.java:241] [main] Processing chromosome C32848\r\n", "Processing chromosome C32848\r\n", "INFO [2014-03-08 06:24:44,760] [Preprocessor.java:241] [main] Processing chromosome C32884\r\n", "Processing chromosome C32884\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:44,784] [Preprocessor.java:241] [main] Processing chromosome C32888\r\n", "Processing chromosome C32888\r\n", "INFO [2014-03-08 06:24:44,793] [Preprocessor.java:241] [main] Processing chromosome C32906\r\n", "Processing chromosome C32906\r\n", "INFO [2014-03-08 06:24:44,808] [Preprocessor.java:241] [main] Processing chromosome C32914\r\n", "Processing chromosome C32914\r\n", "INFO [2014-03-08 06:24:44,814] [Preprocessor.java:241] [main] Processing chromosome C32918\r\n", "Processing chromosome C32918\r\n", "INFO [2014-03-08 06:24:44,824] [Preprocessor.java:241] [main] Processing chromosome C32930\r\n", "Processing chromosome C32930\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:44,874] [Preprocessor.java:241] [main] Processing chromosome C32966\r\n", "Processing chromosome C32966\r\n", "INFO [2014-03-08 06:24:44,882] [Preprocessor.java:241] [main] Processing chromosome C32974\r\n", "Processing chromosome C32974\r\n", "INFO [2014-03-08 06:24:44,887] [Preprocessor.java:241] [main] Processing chromosome C32984\r\n", "Processing chromosome C32984\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:44,906] [Preprocessor.java:241] [main] Processing chromosome C32986\r\n", "Processing chromosome C32986\r\n", "INFO [2014-03-08 06:24:44,927] [Preprocessor.java:241] [main] Processing chromosome C32992\r\n", "Processing chromosome C32992\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:44,956] [Preprocessor.java:241] [main] Processing chromosome C32994\r\n", "Processing chromosome C32994\r\n", "INFO [2014-03-08 06:24:44,985] [Preprocessor.java:241] [main] Processing chromosome C33024\r\n", "Processing chromosome C33024\r\n", "INFO [2014-03-08 06:24:44,992] [Preprocessor.java:241] [main] Processing chromosome C33038\r\n", "Processing chromosome C33038\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:45,003] [Preprocessor.java:241] [main] Processing chromosome C33084\r\n", "Processing chromosome C33084\r\n", "INFO [2014-03-08 06:24:45,027] [Preprocessor.java:241] [main] Processing chromosome C33102\r\n", "Processing chromosome C33102\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:45,258] [Preprocessor.java:241] [main] Processing chromosome C33126\r\n", "Processing chromosome C33126\r\n", "INFO [2014-03-08 06:24:45,271] [Preprocessor.java:241] [main] Processing chromosome C33128\r\n", "Processing chromosome C33128\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:45,320] [Preprocessor.java:241] [main] Processing chromosome C33136\r\n", "Processing chromosome C33136\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:45,353] [Preprocessor.java:241] [main] Processing chromosome C33148\r\n", "Processing chromosome C33148\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:45,391] [Preprocessor.java:241] [main] Processing chromosome C33162\r\n", "Processing chromosome C33162\r\n", "INFO [2014-03-08 06:24:45,396] [Preprocessor.java:241] [main] Processing chromosome C33172\r\n", "Processing chromosome C33172\r\n", "INFO [2014-03-08 06:24:45,414] [Preprocessor.java:241] [main] Processing chromosome C33174\r\n", "Processing chromosome C33174\r\n", "INFO [2014-03-08 06:24:45,420] [Preprocessor.java:241] [main] Processing chromosome C33182\r\n", "Processing chromosome C33182\r\n", "INFO [2014-03-08 06:24:45,428] [Preprocessor.java:241] [main] Processing chromosome C33188\r\n", "Processing chromosome C33188\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:45,440] [Preprocessor.java:241] [main] Processing chromosome C33200\r\n", "Processing chromosome C33200\r\n", "INFO [2014-03-08 06:24:45,464] [Preprocessor.java:241] [main] Processing chromosome C33204\r\n", "Processing chromosome C33204\r\n", "INFO [2014-03-08 06:24:45,478] [Preprocessor.java:241] [main] Processing chromosome C33220\r\n", "Processing chromosome C33220\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:45,512] [Preprocessor.java:241] [main] Processing chromosome C33222\r\n", "Processing chromosome C33222\r\n", "INFO [2014-03-08 06:24:45,519] [Preprocessor.java:241] [main] Processing chromosome C33230\r\n", "Processing chromosome C33230\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:45,553] [Preprocessor.java:241] [main] Processing chromosome C33236\r\n", "Processing chromosome C33236\r\n", "INFO [2014-03-08 06:24:45,580] [Preprocessor.java:241] [main] Processing chromosome C33244\r\n", "Processing chromosome C33244\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:45,609] [Preprocessor.java:241] [main] Processing chromosome C33256\r\n", "Processing chromosome C33256\r\n", "INFO [2014-03-08 06:24:45,647] [Preprocessor.java:241] [main] Processing chromosome C33260\r\n", "Processing chromosome C33260\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:45,675] [Preprocessor.java:241] [main] Processing chromosome C33308\r\n", "Processing chromosome C33308\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:45,709] [Preprocessor.java:241] [main] Processing chromosome C33310\r\n", "Processing chromosome C33310\r\n", "INFO [2014-03-08 06:24:45,733] [Preprocessor.java:241] [main] Processing chromosome C33320\r\n", "Processing chromosome C33320\r\n", "INFO [2014-03-08 06:24:45,751] [Preprocessor.java:241] [main] Processing chromosome C33332\r\n", "Processing chromosome C33332\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:45,758] [Preprocessor.java:241] [main] Processing chromosome C33368\r\n", "Processing chromosome C33368\r\n", "INFO [2014-03-08 06:24:45,787] [Preprocessor.java:241] [main] Processing chromosome C33378\r\n", "Processing chromosome C33378\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:45,809] [Preprocessor.java:241] [main] Processing chromosome C33408\r\n", "Processing chromosome C33408\r\n", "INFO [2014-03-08 06:24:45,831] [Preprocessor.java:241] [main] Processing chromosome C33436\r\n", "Processing chromosome C33436\r\n", "INFO [2014-03-08 06:24:45,850] [Preprocessor.java:241] [main] Processing chromosome C33442\r\n", "Processing chromosome C33442\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:45,879] [Preprocessor.java:241] [main] Processing chromosome C3345\r\n", "Processing chromosome C3345\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:45,921] [Preprocessor.java:241] [main] Processing chromosome C33464\r\n", "Processing chromosome C33464\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:45,986] [Preprocessor.java:241] [main] Processing chromosome C33472\r\n", "Processing chromosome C33472\r\n", "INFO [2014-03-08 06:24:46,011] [Preprocessor.java:241] [main] Processing chromosome C33478\r\n", "Processing chromosome C33478\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:46,038] [Preprocessor.java:241] [main] Processing chromosome C33482\r\n", "Processing chromosome C33482\r\n", "INFO [2014-03-08 06:24:46,045] [Preprocessor.java:241] [main] Processing chromosome C33496\r\n", "Processing chromosome C33496\r\n", "INFO [2014-03-08 06:24:46,047] [Preprocessor.java:241] [main] Processing chromosome C33510\r\n", "Processing chromosome C33510\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:46,086] [Preprocessor.java:241] [main] Processing chromosome C33524\r\n", "Processing chromosome C33524\r\n", "INFO [2014-03-08 06:24:46,107] [Preprocessor.java:241] [main] Processing chromosome C33534\r\n", "Processing chromosome C33534\r\n", "INFO [2014-03-08 06:24:46,122] [Preprocessor.java:241] [main] Processing chromosome C33560\r\n", "Processing chromosome C33560\r\n", "INFO [2014-03-08 06:24:46,128] [Preprocessor.java:241] [main] Processing chromosome C33576\r\n", "Processing chromosome C33576\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:46,139] [Preprocessor.java:241] [main] Processing chromosome C33580\r\n", "Processing chromosome C33580\r\n", "INFO [2014-03-08 06:24:46,161] [Preprocessor.java:241] [main] Processing chromosome C33592\r\n", "Processing chromosome C33592\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:46,197] [Preprocessor.java:241] [main] Processing chromosome C3361\r\n", "Processing chromosome C3361\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:46,260] [Preprocessor.java:241] [main] Processing chromosome C33614\r\n", "Processing chromosome C33614\r\n", "INFO [2014-03-08 06:24:46,269] [Preprocessor.java:241] [main] Processing chromosome C33646\r\n", "Processing chromosome C33646\r\n", "INFO [2014-03-08 06:24:46,290] [Preprocessor.java:241] [main] Processing chromosome C33654\r\n", "Processing chromosome C33654\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:46,309] [Preprocessor.java:241] [main] Processing chromosome C33658\r\n", "Processing chromosome C33658\r\n", "INFO [2014-03-08 06:24:46,331] [Preprocessor.java:241] [main] Processing chromosome C33664\r\n", "Processing chromosome C33664\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:46,383] [Preprocessor.java:241] [main] Processing chromosome C33666\r\n", "Processing chromosome C33666\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:46,412] [Preprocessor.java:241] [main] Processing chromosome C33688\r\n", "Processing chromosome C33688\r\n", "INFO [2014-03-08 06:24:46,452] [Preprocessor.java:241] [main] Processing chromosome C33708\r\n", "Processing chromosome C33708\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:46,496] [Preprocessor.java:241] [main] Processing chromosome C33730\r\n", "Processing chromosome C33730\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:46,517] [Preprocessor.java:241] [main] Processing chromosome C33734\r\n", "Processing chromosome C33734\r\n", "INFO [2014-03-08 06:24:46,544] [Preprocessor.java:241] [main] Processing chromosome C33748\r\n", "Processing chromosome C33748\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:46,584] [Preprocessor.java:241] [main] Processing chromosome C33762\r\n", "Processing chromosome C33762\r\n", "INFO [2014-03-08 06:24:46,611] [Preprocessor.java:241] [main] Processing chromosome C33776\r\n", "Processing chromosome C33776\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:46,622] [Preprocessor.java:241] [main] Processing chromosome C33812\r\n", "Processing chromosome C33812\r\n", "INFO [2014-03-08 06:24:46,649] [Preprocessor.java:241] [main] Processing chromosome C33864\r\n", "Processing chromosome C33864\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:46,674] [Preprocessor.java:241] [main] Processing chromosome C33892\r\n", "Processing chromosome C33892\r\n", "INFO [2014-03-08 06:24:46,697] [Preprocessor.java:241] [main] Processing chromosome C33918\r\n", "Processing chromosome C33918\r\n", "INFO [2014-03-08 06:24:46,712] [Preprocessor.java:241] [main] Processing chromosome C33952\r\n", "Processing chromosome C33952\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:46,745] [Preprocessor.java:241] [main] Processing chromosome C34010\r\n", "Processing chromosome C34010\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:46,792] [Preprocessor.java:241] [main] Processing chromosome C34066\r\n", "Processing chromosome C34066\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:46,823] [Preprocessor.java:241] [main] Processing chromosome C3407\r\n", "Processing chromosome C3407\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:46,891] [Preprocessor.java:241] [main] Processing chromosome C34072\r\n", "Processing chromosome C34072\r\n", "INFO [2014-03-08 06:24:46,911] [Preprocessor.java:241] [main] Processing chromosome C34104\r\n", "Processing chromosome C34104\r\n", "INFO [2014-03-08 06:24:46,923] [Preprocessor.java:241] [main] Processing chromosome C34110\r\n", "Processing chromosome C34110\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:46,941] [Preprocessor.java:241] [main] Processing chromosome C34112\r\n", "Processing chromosome C34112\r\n", "INFO [2014-03-08 06:24:46,945] [Preprocessor.java:241] [main] Processing chromosome C34116\r\n", "Processing chromosome C34116\r\n", "INFO [2014-03-08 06:24:46,952] [Preprocessor.java:241] [main] Processing chromosome C34120\r\n", "Processing chromosome C34120\r\n", "INFO [2014-03-08 06:24:46,959] [Preprocessor.java:241] [main] Processing chromosome C34122\r\n", "Processing chromosome C34122\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:46,977] [Preprocessor.java:241] [main] Processing chromosome C34136\r\n", "Processing chromosome C34136\r\n", "INFO [2014-03-08 06:24:47,003] [Preprocessor.java:241] [main] Processing chromosome C3415\r\n", "Processing chromosome C3415\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:47,036] [Preprocessor.java:241] [main] Processing chromosome C34158\r\n", "Processing chromosome C34158\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:47,108] [Preprocessor.java:241] [main] Processing chromosome C34160\r\n", "Processing chromosome C34160\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:47,159] [Preprocessor.java:241] [main] Processing chromosome C34166\r\n", "Processing chromosome C34166\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:47,191] [Preprocessor.java:241] [main] Processing chromosome C34174\r\n", "Processing chromosome C34174\r\n", "INFO [2014-03-08 06:24:47,210] [Preprocessor.java:241] [main] Processing chromosome C34176\r\n", "Processing chromosome C34176\r\n", "INFO [2014-03-08 06:24:47,236] [Preprocessor.java:241] [main] Processing chromosome C3419\r\n", "Processing chromosome C3419\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:47,275] [Preprocessor.java:241] [main] Processing chromosome C34200\r\n", "Processing chromosome C34200\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:47,317] [Preprocessor.java:241] [main] Processing chromosome C34208\r\n", "Processing chromosome C34208\r\n", "INFO [2014-03-08 06:24:47,336] [Preprocessor.java:241] [main] Processing chromosome C34218\r\n", "Processing chromosome C34218\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:47,353] [Preprocessor.java:241] [main] Processing chromosome C34226\r\n", "Processing chromosome C34226\r\n", "INFO [2014-03-08 06:24:47,370] [Preprocessor.java:241] [main] Processing chromosome C34250\r\n", "Processing chromosome C34250\r\n", "INFO [2014-03-08 06:24:47,388] [Preprocessor.java:241] [main] Processing chromosome C34256\r\n", "Processing chromosome C34256\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:47,429] [Preprocessor.java:241] [main] Processing chromosome C34270\r\n", "Processing chromosome C34270\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:47,464] [Preprocessor.java:241] [main] Processing chromosome C34272\r\n", "Processing chromosome C34272\r\n", "INFO [2014-03-08 06:24:47,470] [Preprocessor.java:241] [main] Processing chromosome C34274\r\n", "Processing chromosome C34274\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:47,544] [Preprocessor.java:241] [main] Processing chromosome C34286\r\n", "Processing chromosome C34286\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:47,576] [Preprocessor.java:241] [main] Processing chromosome C34288\r\n", "Processing chromosome C34288\r\n", "INFO [2014-03-08 06:24:47,583] [Preprocessor.java:241] [main] Processing chromosome C34300\r\n", "Processing chromosome C34300\r\n", "INFO [2014-03-08 06:24:47,602] [Preprocessor.java:241] [main] Processing chromosome C34310\r\n", "Processing chromosome C34310\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:47,619] [Preprocessor.java:241] [main] Processing chromosome C34320\r\n", "Processing chromosome C34320\r\n", "INFO [2014-03-08 06:24:47,649] [Preprocessor.java:241] [main] Processing chromosome C34340\r\n", "Processing chromosome C34340\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:47,691] [Preprocessor.java:241] [main] Processing chromosome C34372\r\n", "Processing chromosome C34372\r\n", "INFO [2014-03-08 06:24:47,709] [Preprocessor.java:241] [main] Processing chromosome C34402\r\n", "Processing chromosome C34402\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:47,723] [Preprocessor.java:241] [main] Processing chromosome C34406\r\n", "Processing chromosome C34406\r\n", "INFO [2014-03-08 06:24:47,737] [Preprocessor.java:241] [main] Processing chromosome C34408\r\n", "Processing chromosome C34408\r\n", "INFO [2014-03-08 06:24:47,743] [Preprocessor.java:241] [main] Processing chromosome C34418\r\n", "Processing chromosome C34418\r\n", "INFO [2014-03-08 06:24:47,769] [Preprocessor.java:241] [main] Processing chromosome C3443\r\n", "Processing chromosome C3443\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:47,810] [Preprocessor.java:241] [main] Processing chromosome C34436\r\n", "Processing chromosome C34436\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:47,861] [Preprocessor.java:241] [main] Processing chromosome C34444\r\n", "Processing chromosome C34444\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:47,886] [Preprocessor.java:241] [main] Processing chromosome C34458\r\n", "Processing chromosome C34458\r\n", "INFO [2014-03-08 06:24:47,906] [Preprocessor.java:241] [main] Processing chromosome C34464\r\n", "Processing chromosome C34464\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:47,935] [Preprocessor.java:241] [main] Processing chromosome C34466\r\n", "Processing chromosome C34466\r\n", "INFO [2014-03-08 06:24:47,948] [Preprocessor.java:241] [main] Processing chromosome C34488\r\n", "Processing chromosome C34488\r\n", "INFO [2014-03-08 06:24:47,974] [Preprocessor.java:241] [main] Processing chromosome C34496\r\n", "Processing chromosome C34496\r\n", "INFO [2014-03-08 06:24:47,980] [Preprocessor.java:241] [main] Processing chromosome C34516\r\n", "Processing chromosome C34516\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:47,988] [Preprocessor.java:241] [main] Processing chromosome C34546\r\n", "Processing chromosome C34546\r\n", "INFO [2014-03-08 06:24:48,021] [Preprocessor.java:241] [main] Processing chromosome C34550\r\n", "Processing chromosome C34550\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:48,066] [Preprocessor.java:241] [main] Processing chromosome C34552\r\n", "Processing chromosome C34552\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:48,109] [Preprocessor.java:241] [main] Processing chromosome C34556\r\n", "Processing chromosome C34556\r\n", "INFO [2014-03-08 06:24:48,149] [Preprocessor.java:241] [main] Processing chromosome C34562\r\n", "Processing chromosome C34562\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:48,165] [Preprocessor.java:241] [main] Processing chromosome C34564\r\n", "Processing chromosome C34564\r\n", "INFO [2014-03-08 06:24:48,177] [Preprocessor.java:241] [main] Processing chromosome C34566\r\n", "Processing chromosome C34566\r\n", "INFO [2014-03-08 06:24:48,185] [Preprocessor.java:241] [main] Processing chromosome C34600\r\n", "Processing chromosome C34600\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:48,233] [Preprocessor.java:241] [main] Processing chromosome C34622\r\n", "Processing chromosome C34622\r\n", "INFO [2014-03-08 06:24:48,256] [Preprocessor.java:241] [main] Processing chromosome C34630\r\n", "Processing chromosome C34630\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:48,317] [Preprocessor.java:241] [main] Processing chromosome C34634\r\n", "Processing chromosome C34634\r\n", "INFO [2014-03-08 06:24:48,326] [Preprocessor.java:241] [main] Processing chromosome C34636\r\n", "Processing chromosome C34636\r\n", "INFO [2014-03-08 06:24:48,347] [Preprocessor.java:241] [main] Processing chromosome C34708\r\n", "Processing chromosome C34708\r\n", "INFO [2014-03-08 06:24:48,363] [Preprocessor.java:241] [main] Processing chromosome C34712\r\n", "Processing chromosome C34712\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:48,447] [Preprocessor.java:241] [main] Processing chromosome C34726\r\n", "Processing chromosome C34726\r\n", "INFO [2014-03-08 06:24:48,463] [Preprocessor.java:241] [main] Processing chromosome C34792\r\n", "Processing chromosome C34792\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:48,514] [Preprocessor.java:241] [main] Processing chromosome C34798\r\n", "Processing chromosome C34798\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:48,542] [Preprocessor.java:241] [main] Processing chromosome C34804\r\n", "Processing chromosome C34804\r\n", "INFO [2014-03-08 06:24:48,551] [Preprocessor.java:241] [main] Processing chromosome C34846\r\n", "Processing chromosome C34846\r\n", "INFO [2014-03-08 06:24:48,556] [Preprocessor.java:241] [main] Processing chromosome C34856\r\n", "Processing chromosome C34856\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:48,573] [Preprocessor.java:241] [main] Processing chromosome C34876\r\n", "Processing chromosome C34876\r\n", "INFO [2014-03-08 06:24:48,601] [Preprocessor.java:241] [main] Processing chromosome C34884\r\n", "Processing chromosome C34884\r\n", "INFO [2014-03-08 06:24:48,619] [Preprocessor.java:241] [main] Processing chromosome C349\r\n", "Processing chromosome C349\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:48,696] [Preprocessor.java:241] [main] Processing chromosome C34902\r\n", "Processing chromosome C34902\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:48,742] [Preprocessor.java:241] [main] Processing chromosome C34948\r\n", "Processing chromosome C34948\r\n", "INFO [2014-03-08 06:24:48,778] [Preprocessor.java:241] [main] Processing chromosome C35006\r\n", "Processing chromosome C35006\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:48,818] [Preprocessor.java:241] [main] Processing chromosome C35028\r\n", "Processing chromosome C35028\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:48,876] [Preprocessor.java:241] [main] Processing chromosome C35042\r\n", "Processing chromosome C35042\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:48,919] [Preprocessor.java:241] [main] Processing chromosome C35068\r\n", "Processing chromosome C35068\r\n", "INFO [2014-03-08 06:24:48,933] [Preprocessor.java:241] [main] Processing chromosome C35134\r\n", "Processing chromosome C35134\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:48,952] [Preprocessor.java:241] [main] Processing chromosome C35160\r\n", "Processing chromosome C35160\r\n", "INFO [2014-03-08 06:24:48,957] [Preprocessor.java:241] [main] Processing chromosome C35168\r\n", "Processing chromosome C35168\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:49,014] [Preprocessor.java:241] [main] Processing chromosome C35172\r\n", "Processing chromosome C35172\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:49,089] [Preprocessor.java:241] [main] Processing chromosome C35260\r\n", "Processing chromosome C35260\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:49,129] [Preprocessor.java:241] [main] Processing chromosome C35262\r\n", "Processing chromosome C35262\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:49,249] [Preprocessor.java:241] [main] Processing chromosome C35282\r\n", "Processing chromosome C35282\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:49,299] [Preprocessor.java:241] [main] Processing chromosome C35386\r\n", "Processing chromosome C35386\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:49,346] [Preprocessor.java:241] [main] Processing chromosome C35400\r\n", "Processing chromosome C35400\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:49,427] [Preprocessor.java:241] [main] Processing chromosome C35502\r\n", "Processing chromosome C35502\r\n", "INFO [2014-03-08 06:24:49,431] [Preprocessor.java:241] [main] Processing chromosome C3553\r\n", "Processing chromosome C3553\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:49,512] [Preprocessor.java:241] [main] Processing chromosome C35532\r\n", "Processing chromosome C35532\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:49,581] [Preprocessor.java:241] [main] Processing chromosome C35548\r\n", "Processing chromosome C35548\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:49,626] [Preprocessor.java:241] [main] Processing chromosome C35556\r\n", "Processing chromosome C35556\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:49,747] [Preprocessor.java:241] [main] Processing chromosome C35564\r\n", "Processing chromosome C35564\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:49,779] [Preprocessor.java:241] [main] Processing chromosome C35606\r\n", "Processing chromosome C35606\r\n", "INFO [2014-03-08 06:24:49,786] [Preprocessor.java:241] [main] Processing chromosome C35642\r\n", "Processing chromosome C35642\r\n", "INFO [2014-03-08 06:24:49,796] [Preprocessor.java:241] [main] Processing chromosome C35646\r\n", "Processing chromosome C35646\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:49,828] [Preprocessor.java:241] [main] Processing chromosome C35716\r\n", "Processing chromosome C35716\r\n", "INFO [2014-03-08 06:24:49,846] [Preprocessor.java:241] [main] Processing chromosome C35760\r\n", "Processing chromosome C35760\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:49,887] [Preprocessor.java:241] [main] Processing chromosome C3577\r\n", "Processing chromosome C3577\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:50,034] [Preprocessor.java:241] [main] Processing chromosome C35776\r\n", "Processing chromosome C35776\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:50,105] [Preprocessor.java:241] [main] Processing chromosome C35786\r\n", "Processing chromosome C35786\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:50,134] [Preprocessor.java:241] [main] Processing chromosome C3579\r\n", "Processing chromosome C3579\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:50,179] [Preprocessor.java:241] [main] Processing chromosome C35794\r\n", "Processing chromosome C35794\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:50,240] [Preprocessor.java:241] [main] Processing chromosome C35840\r\n", "Processing chromosome C35840\r\n", "INFO [2014-03-08 06:24:50,273] [Preprocessor.java:241] [main] Processing chromosome C35844\r\n", "Processing chromosome C35844\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:50,314] [Preprocessor.java:241] [main] Processing chromosome C35952\r\n", "Processing chromosome C35952\r\n", "INFO [2014-03-08 06:24:50,330] [Preprocessor.java:241] [main] Processing chromosome C35992\r\n", "Processing chromosome C35992\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:50,383] [Preprocessor.java:241] [main] Processing chromosome C36014\r\n", "Processing chromosome C36014\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:50,434] [Preprocessor.java:241] [main] Processing chromosome C36028\r\n", "Processing chromosome C36028\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:50,474] [Preprocessor.java:241] [main] Processing chromosome C36038\r\n", "Processing chromosome C36038\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:50,516] [Preprocessor.java:241] [main] Processing chromosome C361\r\n", "Processing chromosome C361\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:50,632] [Preprocessor.java:241] [main] Processing chromosome C36172\r\n", "Processing chromosome C36172\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:50,700] [Preprocessor.java:241] [main] Processing chromosome C3627\r\n", "Processing chromosome C3627\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:50,773] [Preprocessor.java:241] [main] Processing chromosome C363\r\n", "Processing chromosome C363\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:50,856] [Preprocessor.java:241] [main] Processing chromosome C36322\r\n", "Processing chromosome C36322\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:50,904] [Preprocessor.java:241] [main] Processing chromosome C3645\r\n", "Processing chromosome C3645\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:50,975] [Preprocessor.java:241] [main] Processing chromosome C3647\r\n", "Processing chromosome C3647\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:51,103] [Preprocessor.java:241] [main] Processing chromosome C365\r\n", "Processing chromosome C365\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:51,159] [Preprocessor.java:241] [main] Processing chromosome C3655\r\n", "Processing chromosome C3655\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:51,219] [Preprocessor.java:241] [main] Processing chromosome C36636\r\n", "Processing chromosome C36636\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:51,290] [Preprocessor.java:241] [main] Processing chromosome C36680\r\n", "Processing chromosome C36680\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:51,324] [Preprocessor.java:241] [main] Processing chromosome C37024\r\n", "Processing chromosome C37024\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:51,420] [Preprocessor.java:241] [main] Processing chromosome C371\r\n", "Processing chromosome C371\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:51,500] [Preprocessor.java:241] [main] Processing chromosome C3721\r\n", "Processing chromosome C3721\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:51,537] [Preprocessor.java:241] [main] Processing chromosome C3725\r\n", "Processing chromosome C3725\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:51,634] [Preprocessor.java:241] [main] Processing chromosome C37392\r\n", "Processing chromosome C37392\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:51,698] [Preprocessor.java:241] [main] Processing chromosome C375\r\n", "Processing chromosome C375\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:51,763] [Preprocessor.java:241] [main] Processing chromosome C377\r\n", "Processing chromosome C377\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:51,818] [Preprocessor.java:241] [main] Processing chromosome C381\r\n", "Processing chromosome C381\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:51,914] [Preprocessor.java:241] [main] Processing chromosome C3823\r\n", "Processing chromosome C3823\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:52,037] [Preprocessor.java:241] [main] Processing chromosome C3835\r\n", "Processing chromosome C3835\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:52,181] [Preprocessor.java:241] [main] Processing chromosome C3851\r\n", "Processing chromosome C3851\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:52,276] [Preprocessor.java:241] [main] Processing chromosome C3863\r\n", "Processing chromosome C3863\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:52,354] [Preprocessor.java:241] [main] Processing chromosome C3873\r\n", "Processing chromosome C3873\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:52,444] [Preprocessor.java:241] [main] Processing chromosome C3911\r\n", "Processing chromosome C3911\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:52,539] [Preprocessor.java:241] [main] Processing chromosome C3915\r\n", "Processing chromosome C3915\r\n", "INFO [2014-03-08 06:24:52,585] [Preprocessor.java:241] [main] Processing chromosome C3965\r\n", "Processing chromosome C3965\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:52,653] [Preprocessor.java:241] [main] Processing chromosome C4017\r\n", "Processing chromosome C4017\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:52,715] [Preprocessor.java:241] [main] Processing chromosome C4021\r\n", "Processing chromosome C4021\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:52,784] [Preprocessor.java:241] [main] Processing chromosome C4037\r\n", "Processing chromosome C4037\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:52,878] [Preprocessor.java:241] [main] Processing chromosome C4057\r\n", "Processing chromosome C4057\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:52,920] [Preprocessor.java:241] [main] Processing chromosome C415\r\n", "Processing chromosome C415\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:52,985] [Preprocessor.java:241] [main] Processing chromosome C4243\r\n", "Processing chromosome C4243\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:53,073] [Preprocessor.java:241] [main] Processing chromosome C4261\r\n", "Processing chromosome C4261\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:53,141] [Preprocessor.java:241] [main] Processing chromosome C4287\r\n", "Processing chromosome C4287\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:53,215] [Preprocessor.java:241] [main] Processing chromosome C4291\r\n", "Processing chromosome C4291\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:53,283] [Preprocessor.java:241] [main] Processing chromosome C4305\r\n", "Processing chromosome C4305\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:53,402] [Preprocessor.java:241] [main] Processing chromosome C4315\r\n", "Processing chromosome C4315\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:53,504] [Preprocessor.java:241] [main] Processing chromosome C4323\r\n", "Processing chromosome C4323\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:53,555] [Preprocessor.java:241] [main] Processing chromosome C4331\r\n", "Processing chromosome C4331\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:53,648] [Preprocessor.java:241] [main] Processing chromosome C4333\r\n", "Processing chromosome C4333\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:53,719] [Preprocessor.java:241] [main] Processing chromosome C4417\r\n", "Processing chromosome C4417\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:53,996] [Preprocessor.java:241] [main] Processing chromosome C4425\r\n", "Processing chromosome C4425\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:54,052] [Preprocessor.java:241] [main] Processing chromosome C4429\r\n", "Processing chromosome C4429\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:54,159] [Preprocessor.java:241] [main] Processing chromosome C4431\r\n", "Processing chromosome C4431\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:54,311] [Preprocessor.java:241] [main] Processing chromosome C4433\r\n", "Processing chromosome C4433\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:54,355] [Preprocessor.java:241] [main] Processing chromosome C4441\r\n", "Processing chromosome C4441\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:54,463] [Preprocessor.java:241] [main] Processing chromosome C4449\r\n", "Processing chromosome C4449\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:54,607] [Preprocessor.java:241] [main] Processing chromosome C4465\r\n", "Processing chromosome C4465\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:54,673] [Preprocessor.java:241] [main] Processing chromosome C4517\r\n", "Processing chromosome C4517\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:54,844] [Preprocessor.java:241] [main] Processing chromosome C4535\r\n", "Processing chromosome C4535\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:54,953] [Preprocessor.java:241] [main] Processing chromosome C4671\r\n", "Processing chromosome C4671\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:54,997] [Preprocessor.java:241] [main] Processing chromosome C4689\r\n", "Processing chromosome C4689\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:55,127] [Preprocessor.java:241] [main] Processing chromosome C4695\r\n", "Processing chromosome C4695\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:55,233] [Preprocessor.java:241] [main] Processing chromosome C4697\r\n", "Processing chromosome C4697\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:55,302] [Preprocessor.java:241] [main] Processing chromosome C4705\r\n", "Processing chromosome C4705\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:55,421] [Preprocessor.java:241] [main] Processing chromosome C4729\r\n", "Processing chromosome C4729\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:55,488] [Preprocessor.java:241] [main] Processing chromosome C4759\r\n", "Processing chromosome C4759\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:55,596] [Preprocessor.java:241] [main] Processing chromosome C4769\r\n", "Processing chromosome C4769\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:55,684] [Preprocessor.java:241] [main] Processing chromosome C4773\r\n", "Processing chromosome C4773\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:55,785] [Preprocessor.java:241] [main] Processing chromosome C4867\r\n", "Processing chromosome C4867\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:55,909] [Preprocessor.java:241] [main] Processing chromosome C4873\r\n", "Processing chromosome C4873\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:55,984] [Preprocessor.java:241] [main] Processing chromosome C4875\r\n", "Processing chromosome C4875\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:56,026] [Preprocessor.java:241] [main] Processing chromosome C4883\r\n", "Processing chromosome C4883\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:56,159] [Preprocessor.java:241] [main] Processing chromosome C4893\r\n", "Processing chromosome C4893\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:56,211] [Preprocessor.java:241] [main] Processing chromosome C4901\r\n", "Processing chromosome C4901\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:56,363] [Preprocessor.java:241] [main] Processing chromosome C4907\r\n", "Processing chromosome C4907\r\n", "INFO [2014-03-08 06:24:56,404] [Preprocessor.java:241] [main] Processing chromosome C4955\r\n", "Processing chromosome C4955\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:56,499] [Preprocessor.java:241] [main] Processing chromosome C4969\r\n", "Processing chromosome C4969\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:56,538] [Preprocessor.java:241] [main] Processing chromosome C5077\r\n", "Processing chromosome C5077\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:56,622] [Preprocessor.java:241] [main] Processing chromosome C5105\r\n", "Processing chromosome C5105\r\n", "INFO [2014-03-08 06:24:56,660] [Preprocessor.java:241] [main] Processing chromosome C5135\r\n", "Processing chromosome C5135\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:56,752] [Preprocessor.java:241] [main] Processing chromosome C5149\r\n", "Processing chromosome C5149\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:56,795] [Preprocessor.java:241] [main] Processing chromosome C5169\r\n", "Processing chromosome C5169\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:56,971] [Preprocessor.java:241] [main] Processing chromosome C5181\r\n", "Processing chromosome C5181\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:57,055] [Preprocessor.java:241] [main] Processing chromosome C5183\r\n", "Processing chromosome C5183\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:57,184] [Preprocessor.java:241] [main] Processing chromosome C5187\r\n", "Processing chromosome C5187\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:57,226] [Preprocessor.java:241] [main] Processing chromosome C5189\r\n", "Processing chromosome C5189\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:57,315] [Preprocessor.java:241] [main] Processing chromosome C5193\r\n", "Processing chromosome C5193\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:57,387] [Preprocessor.java:241] [main] Processing chromosome C5201\r\n", "Processing chromosome C5201\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:57,457] [Preprocessor.java:241] [main] Processing chromosome C5203\r\n", "Processing chromosome C5203\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:57,524] [Preprocessor.java:241] [main] Processing chromosome C523\r\n", "Processing chromosome C523\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:57,594] [Preprocessor.java:241] [main] Processing chromosome C5325\r\n", "Processing chromosome C5325\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:57,681] [Preprocessor.java:241] [main] Processing chromosome C5333\r\n", "Processing chromosome C5333\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:57,753] [Preprocessor.java:241] [main] Processing chromosome C5335\r\n", "Processing chromosome C5335\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:57,793] [Preprocessor.java:241] [main] Processing chromosome C5363\r\n", "Processing chromosome C5363\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:57,858] [Preprocessor.java:241] [main] Processing chromosome C5405\r\n", "Processing chromosome C5405\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:57,958] [Preprocessor.java:241] [main] Processing chromosome C5411\r\n", "Processing chromosome C5411\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:58,002] [Preprocessor.java:241] [main] Processing chromosome C5423\r\n", "Processing chromosome C5423\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:58,099] [Preprocessor.java:241] [main] Processing chromosome C5429\r\n", "Processing chromosome C5429\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:58,208] [Preprocessor.java:241] [main] Processing chromosome C5445\r\n", "Processing chromosome C5445\r\n", "INFO [2014-03-08 06:24:58,254] [Preprocessor.java:241] [main] Processing chromosome C5545\r\n", "Processing chromosome C5545\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:58,355] [Preprocessor.java:241] [main] Processing chromosome C5557\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "Processing chromosome C5557\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:58,459] [Preprocessor.java:241] [main] Processing chromosome C5565\r\n", "Processing chromosome C5565\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:58,536] [Preprocessor.java:241] [main] Processing chromosome C5567\r\n", "Processing chromosome C5567\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:58,576] [Preprocessor.java:241] [main] Processing chromosome C5573\r\n", "Processing chromosome C5573\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:58,635] [Preprocessor.java:241] [main] Processing chromosome C5593\r\n", "Processing chromosome C5593\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:58,761] [Preprocessor.java:241] [main] Processing chromosome C5607\r\n", "Processing chromosome C5607\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:58,826] [Preprocessor.java:241] [main] Processing chromosome C5657\r\n", "Processing chromosome C5657\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:58,900] [Preprocessor.java:241] [main] Processing chromosome C5677\r\n", "Processing chromosome C5677\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:58,942] [Preprocessor.java:241] [main] Processing chromosome C5679\r\n", "Processing chromosome C5679\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:59,037] [Preprocessor.java:241] [main] Processing chromosome C571\r\n", "Processing chromosome C571\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:59,088] [Preprocessor.java:241] [main] Processing chromosome C5771\r\n", "Processing chromosome C5771\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:59,191] [Preprocessor.java:241] [main] Processing chromosome C5775\r\n", "Processing chromosome C5775\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:59,281] [Preprocessor.java:241] [main] Processing chromosome C5777\r\n", "Processing chromosome C5777\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:59,397] [Preprocessor.java:241] [main] Processing chromosome C5785\r\n", "Processing chromosome C5785\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:59,463] [Preprocessor.java:241] [main] Processing chromosome C5819\r\n", "Processing chromosome C5819\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:59,650] [Preprocessor.java:241] [main] Processing chromosome C5827\r\n", "Processing chromosome C5827\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:59,691] [Preprocessor.java:241] [main] Processing chromosome C5847\r\n", "Processing chromosome C5847\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:59,797] [Preprocessor.java:241] [main] Processing chromosome C5853\r\n", "Processing chromosome C5853\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:59,901] [Preprocessor.java:241] [main] Processing chromosome C5877\r\n", "Processing chromosome C5877\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:24:59,954] [Preprocessor.java:241] [main] Processing chromosome C593\r\n", "Processing chromosome C593\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:00,065] [Preprocessor.java:241] [main] Processing chromosome C6015\r\n", "Processing chromosome C6015\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:00,207] [Preprocessor.java:241] [main] Processing chromosome C6057\r\n", "Processing chromosome C6057\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:00,292] [Preprocessor.java:241] [main] Processing chromosome C6107\r\n", "Processing chromosome C6107\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:00,464] [Preprocessor.java:241] [main] Processing chromosome C6117\r\n", "Processing chromosome C6117\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:00,564] [Preprocessor.java:241] [main] Processing chromosome C6123\r\n", "Processing chromosome C6123\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:00,617] [Preprocessor.java:241] [main] Processing chromosome C617\r\n", "Processing chromosome C617\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:00,686] [Preprocessor.java:241] [main] Processing chromosome C6187\r\n", "Processing chromosome C6187\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:00,752] [Preprocessor.java:241] [main] Processing chromosome C6207\r\n", "Processing chromosome C6207\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:00,853] [Preprocessor.java:241] [main] Processing chromosome C6215\r\n", "Processing chromosome C6215\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:01,064] [Preprocessor.java:241] [main] Processing chromosome C6227\r\n", "Processing chromosome C6227\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:01,113] [Preprocessor.java:241] [main] Processing chromosome C623\r\n", "Processing chromosome C623\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:01,210] [Preprocessor.java:241] [main] Processing chromosome C6261\r\n", "Processing chromosome C6261\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:01,276] [Preprocessor.java:241] [main] Processing chromosome C6265\r\n", "Processing chromosome C6265\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:01,383] [Preprocessor.java:241] [main] Processing chromosome C6269\r\n", "Processing chromosome C6269\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:01,481] [Preprocessor.java:241] [main] Processing chromosome C6275\r\n", "Processing chromosome C6275\r\n", "INFO [2014-03-08 06:25:01,570] [Preprocessor.java:241] [main] Processing chromosome C6277\r\n", "Processing chromosome C6277\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:01,706] [Preprocessor.java:241] [main] Processing chromosome C6283\r\n", "Processing chromosome C6283\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:01,811] [Preprocessor.java:241] [main] Processing chromosome C6337\r\n", "Processing chromosome C6337\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:01,934] [Preprocessor.java:241] [main] Processing chromosome C6363\r\n", "Processing chromosome C6363\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:01,974] [Preprocessor.java:241] [main] Processing chromosome C6369\r\n", "Processing chromosome C6369\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:02,041] [Preprocessor.java:241] [main] Processing chromosome C6379\r\n", "Processing chromosome C6379\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:02,066] [Preprocessor.java:241] [main] Processing chromosome C6381\r\n", "Processing chromosome C6381\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:02,113] [Preprocessor.java:241] [main] Processing chromosome C6383\r\n", "Processing chromosome C6383\r\n", "INFO [2014-03-08 06:25:02,156] [Preprocessor.java:241] [main] Processing chromosome C6387\r\n", "Processing chromosome C6387\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:02,196] [Preprocessor.java:241] [main] Processing chromosome C6399\r\n", "Processing chromosome C6399\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:02,266] [Preprocessor.java:241] [main] Processing chromosome C6401\r\n", "Processing chromosome C6401\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:02,353] [Preprocessor.java:241] [main] Processing chromosome C6441\r\n", "Processing chromosome C6441\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:02,426] [Preprocessor.java:241] [main] Processing chromosome C6459\r\n", "Processing chromosome C6459\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:02,451] [Preprocessor.java:241] [main] Processing chromosome C6563\r\n", "Processing chromosome C6563\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:02,499] [Preprocessor.java:241] [main] Processing chromosome C6589\r\n", "Processing chromosome C6589\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:02,559] [Preprocessor.java:241] [main] Processing chromosome C6599\r\n", "Processing chromosome C6599\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:02,626] [Preprocessor.java:241] [main] Processing chromosome C6601\r\n", "Processing chromosome C6601\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:02,735] [Preprocessor.java:241] [main] Processing chromosome C6625\r\n", "Processing chromosome C6625\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:02,819] [Preprocessor.java:241] [main] Processing chromosome C6637\r\n", "Processing chromosome C6637\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:02,917] [Preprocessor.java:241] [main] Processing chromosome C6643\r\n", "Processing chromosome C6643\r\n", "INFO [2014-03-08 06:25:02,948] [Preprocessor.java:241] [main] Processing chromosome C671\r\n", "Processing chromosome C671\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:03,125] [Preprocessor.java:241] [main] Processing chromosome C6727\r\n", "Processing chromosome C6727\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:03,157] [Preprocessor.java:241] [main] Processing chromosome C6735\r\n", "Processing chromosome C6735\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:03,238] [Preprocessor.java:241] [main] Processing chromosome C6759\r\n", "Processing chromosome C6759\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:03,265] [Preprocessor.java:241] [main] Processing chromosome C6787\r\n", "Processing chromosome C6787\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:03,326] [Preprocessor.java:241] [main] Processing chromosome C6807\r\n", "Processing chromosome C6807\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:03,388] [Preprocessor.java:241] [main] Processing chromosome C6811\r\n", "Processing chromosome C6811\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:03,436] [Preprocessor.java:241] [main] Processing chromosome C6841\r\n", "Processing chromosome C6841\r\n", "INFO [2014-03-08 06:25:03,460] [Preprocessor.java:241] [main] Processing chromosome C6911\r\n", "Processing chromosome C6911\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:03,535] [Preprocessor.java:241] [main] Processing chromosome C6927\r\n", "Processing chromosome C6927\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:03,584] [Preprocessor.java:241] [main] Processing chromosome C6933\r\n", "Processing chromosome C6933\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:03,637] [Preprocessor.java:241] [main] Processing chromosome C6937\r\n", "Processing chromosome C6937\r\n", "INFO [2014-03-08 06:25:03,661] [Preprocessor.java:241] [main] Processing chromosome C6965\r\n", "Processing chromosome C6965\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:03,725] [Preprocessor.java:241] [main] Processing chromosome C6989\r\n", "Processing chromosome C6989\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:03,767] [Preprocessor.java:241] [main] Processing chromosome C699\r\n", "Processing chromosome C699\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:03,856] [Preprocessor.java:241] [main] Processing chromosome C7003\r\n", "Processing chromosome C7003\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:03,954] [Preprocessor.java:241] [main] Processing chromosome C7015\r\n", "Processing chromosome C7015\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:04,013] [Preprocessor.java:241] [main] Processing chromosome C7019\r\n", "Processing chromosome C7019\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:04,109] [Preprocessor.java:241] [main] Processing chromosome C705\r\n", "Processing chromosome C705\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:04,193] [Preprocessor.java:241] [main] Processing chromosome C7083\r\n", "Processing chromosome C7083\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:04,218] [Preprocessor.java:241] [main] Processing chromosome C7095\r\n", "Processing chromosome C7095\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:04,292] [Preprocessor.java:241] [main] Processing chromosome C7115\r\n", "Processing chromosome C7115\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:04,322] [Preprocessor.java:241] [main] Processing chromosome C7141\r\n", "Processing chromosome C7141\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:04,449] [Preprocessor.java:241] [main] Processing chromosome C7145\r\n", "Processing chromosome C7145\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:04,507] [Preprocessor.java:241] [main] Processing chromosome C7147\r\n", "Processing chromosome C7147\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:04,555] [Preprocessor.java:241] [main] Processing chromosome C7257\r\n", "Processing chromosome C7257\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:04,582] [Preprocessor.java:241] [main] Processing chromosome C7277\r\n", "Processing chromosome C7277\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:04,650] [Preprocessor.java:241] [main] Processing chromosome C7283\r\n", "Processing chromosome C7283\r\n", "INFO [2014-03-08 06:25:04,675] [Preprocessor.java:241] [main] Processing chromosome C7303\r\n", "Processing chromosome C7303\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:04,749] [Preprocessor.java:241] [main] Processing chromosome C7307\r\n", "Processing chromosome C7307\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:04,807] [Preprocessor.java:241] [main] Processing chromosome C7327\r\n", "Processing chromosome C7327\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:04,851] [Preprocessor.java:241] [main] Processing chromosome C7333\r\n", "Processing chromosome C7333\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:04,962] [Preprocessor.java:241] [main] Processing chromosome C7343\r\n", "Processing chromosome C7343\r\n", "INFO [2014-03-08 06:25:04,991] [Preprocessor.java:241] [main] Processing chromosome C7453\r\n", "Processing chromosome C7453\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:05,108] [Preprocessor.java:241] [main] Processing chromosome C7457\r\n", "Processing chromosome C7457\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:05,192] [Preprocessor.java:241] [main] Processing chromosome C7473\r\n", "Processing chromosome C7473\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:05,260] [Preprocessor.java:241] [main] Processing chromosome C7499\r\n", "Processing chromosome C7499\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:05,314] [Preprocessor.java:241] [main] Processing chromosome C7511\r\n", "Processing chromosome C7511\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:05,338] [Preprocessor.java:241] [main] Processing chromosome C7531\r\n", "Processing chromosome C7531\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:05,399] [Preprocessor.java:241] [main] Processing chromosome C7621\r\n", "Processing chromosome C7621\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:05,479] [Preprocessor.java:241] [main] Processing chromosome C7639\r\n", "Processing chromosome C7639\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:05,509] [Preprocessor.java:241] [main] Processing chromosome C7659\r\n", "Processing chromosome C7659\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:05,558] [Preprocessor.java:241] [main] Processing chromosome C7785\r\n", "Processing chromosome C7785\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:05,611] [Preprocessor.java:241] [main] Processing chromosome C7787\r\n", "Processing chromosome C7787\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:05,663] [Preprocessor.java:241] [main] Processing chromosome C7791\r\n", "Processing chromosome C7791\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:05,773] [Preprocessor.java:241] [main] Processing chromosome C7793\r\n", "Processing chromosome C7793\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:05,838] [Preprocessor.java:241] [main] Processing chromosome C7797\r\n", "Processing chromosome C7797\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:05,960] [Preprocessor.java:241] [main] Processing chromosome C7799\r\n", "Processing chromosome C7799\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:06,001] [Preprocessor.java:241] [main] Processing chromosome C7811\r\n", "Processing chromosome C7811\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:06,051] [Preprocessor.java:241] [main] Processing chromosome C7845\r\n", "Processing chromosome C7845\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:06,190] [Preprocessor.java:241] [main] Processing chromosome C785\r\n", "Processing chromosome C785\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:06,292] [Preprocessor.java:241] [main] Processing chromosome C7855\r\n", "Processing chromosome C7855\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:06,435] [Preprocessor.java:241] [main] Processing chromosome C7875\r\n", "Processing chromosome C7875\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:06,519] [Preprocessor.java:241] [main] Processing chromosome C7891\r\n", "Processing chromosome C7891\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:06,563] [Preprocessor.java:241] [main] Processing chromosome C7899\r\n", "Processing chromosome C7899\r\n", "INFO [2014-03-08 06:25:06,588] [Preprocessor.java:241] [main] Processing chromosome C7993\r\n", "Processing chromosome C7993\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:06,642] [Preprocessor.java:241] [main] Processing chromosome C7999\r\n", "Processing chromosome C7999\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:06,739] [Preprocessor.java:241] [main] Processing chromosome C8003\r\n", "Processing chromosome C8003\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:06,810] [Preprocessor.java:241] [main] Processing chromosome C8005\r\n", "Processing chromosome C8005\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:06,892] [Preprocessor.java:241] [main] Processing chromosome C8031\r\n", "Processing chromosome C8031\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:07,003] [Preprocessor.java:241] [main] Processing chromosome C8037\r\n", "Processing chromosome C8037\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:07,045] [Preprocessor.java:241] [main] Processing chromosome C807\r\n", "Processing chromosome C807\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:07,194] [Preprocessor.java:241] [main] Processing chromosome C8113\r\n", "Processing chromosome C8113\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:07,283] [Preprocessor.java:241] [main] Processing chromosome C8125\r\n", "Processing chromosome C8125\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:07,339] [Preprocessor.java:241] [main] Processing chromosome C8133\r\n", "Processing chromosome C8133\r\n", "INFO [2014-03-08 06:25:07,364] [Preprocessor.java:241] [main] Processing chromosome C8153\r\n", "Processing chromosome C8153\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:07,456] [Preprocessor.java:241] [main] Processing chromosome C8159\r\n", "Processing chromosome C8159\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:07,521] [Preprocessor.java:241] [main] Processing chromosome C8167\r\n", "Processing chromosome C8167\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:07,589] [Preprocessor.java:241] [main] Processing chromosome C8177\r\n", "Processing chromosome C8177\r\n", "INFO [2014-03-08 06:25:07,633] [Preprocessor.java:241] [main] Processing chromosome C8189\r\n", "Processing chromosome C8189\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:07,692] [Preprocessor.java:241] [main] Processing chromosome C8205\r\n", "Processing chromosome C8205\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:07,748] [Preprocessor.java:241] [main] Processing chromosome C8231\r\n", "Processing chromosome C8231\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:07,813] [Preprocessor.java:241] [main] Processing chromosome C827\r\n", "Processing chromosome C827\r\n", "INFO [2014-03-08 06:25:07,851] [Preprocessor.java:241] [main] Processing chromosome C8281\r\n", "Processing chromosome C8281\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:07,943] [Preprocessor.java:241] [main] Processing chromosome C8283\r\n", "Processing chromosome C8283\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:08,019] [Preprocessor.java:241] [main] Processing chromosome C8293\r\n", "Processing chromosome C8293\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:08,068] [Preprocessor.java:241] [main] Processing chromosome C8303\r\n", "Processing chromosome C8303\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:08,142] [Preprocessor.java:241] [main] Processing chromosome C8309\r\n", "Processing chromosome C8309\r\n", "INFO [2014-03-08 06:25:08,184] [Preprocessor.java:241] [main] Processing chromosome C8315\r\n", "Processing chromosome C8315\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:08,301] [Preprocessor.java:241] [main] Processing chromosome C8339\r\n", "Processing chromosome C8339\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:08,363] [Preprocessor.java:241] [main] Processing chromosome C8363\r\n", "Processing chromosome C8363\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:08,423] [Preprocessor.java:241] [main] Processing chromosome C8365\r\n", "Processing chromosome C8365\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:08,482] [Preprocessor.java:241] [main] Processing chromosome C8377\r\n", "Processing chromosome C8377\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:08,527] [Preprocessor.java:241] [main] Processing chromosome C8379\r\n", "Processing chromosome C8379\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:08,568] [Preprocessor.java:241] [main] Processing chromosome C8383\r\n", "Processing chromosome C8383\r\n", "INFO [2014-03-08 06:25:08,594] [Preprocessor.java:241] [main] Processing chromosome C8393\r\n", "Processing chromosome C8393\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:08,637] [Preprocessor.java:241] [main] Processing chromosome C8433\r\n", "Processing chromosome C8433\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:08,684] [Preprocessor.java:241] [main] Processing chromosome C8461\r\n", "Processing chromosome C8461\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:08,738] [Preprocessor.java:241] [main] Processing chromosome C8465\r\n", "Processing chromosome C8465\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:08,805] [Preprocessor.java:241] [main] Processing chromosome C8485\r\n", "Processing chromosome C8485\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:08,931] [Preprocessor.java:241] [main] Processing chromosome C8503\r\n", "Processing chromosome C8503\r\n", "INFO [2014-03-08 06:25:08,962] [Preprocessor.java:241] [main] Processing chromosome C8513\r\n", "Processing chromosome C8513\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:09,047] [Preprocessor.java:241] [main] Processing chromosome C8519\r\n", "Processing chromosome C8519\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:09,115] [Preprocessor.java:241] [main] Processing chromosome C8563\r\n", "Processing chromosome C8563\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:09,140] [Preprocessor.java:241] [main] Processing chromosome C8569\r\n", "Processing chromosome C8569\r\n", "INFO [2014-03-08 06:25:09,181] [Preprocessor.java:241] [main] Processing chromosome C8575\r\n", "Processing chromosome C8575\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:09,270] [Preprocessor.java:241] [main] Processing chromosome C8585\r\n", "Processing chromosome C8585\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:09,339] [Preprocessor.java:241] [main] Processing chromosome C859\r\n", "Processing chromosome C859\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:09,391] [Preprocessor.java:241] [main] Processing chromosome C8591\r\n", "Processing chromosome C8591\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:09,478] [Preprocessor.java:241] [main] Processing chromosome C8599\r\n", "Processing chromosome C8599\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:09,565] [Preprocessor.java:241] [main] Processing chromosome C8601\r\n", "Processing chromosome C8601\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:09,594] [Preprocessor.java:241] [main] Processing chromosome C8605\r\n", "Processing chromosome C8605\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:09,665] [Preprocessor.java:241] [main] Processing chromosome C8665\r\n", "Processing chromosome C8665\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:09,733] [Preprocessor.java:241] [main] Processing chromosome C8671\r\n", "Processing chromosome C8671\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:09,791] [Preprocessor.java:241] [main] Processing chromosome C8695\r\n", "Processing chromosome C8695\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:09,816] [Preprocessor.java:241] [main] Processing chromosome C8739\r\n", "Processing chromosome C8739\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:09,854] [Preprocessor.java:241] [main] Processing chromosome C8751\r\n", "Processing chromosome C8751\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:09,927] [Preprocessor.java:241] [main] Processing chromosome C8757\r\n", "Processing chromosome C8757\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:09,996] [Preprocessor.java:241] [main] Processing chromosome C8767\r\n", "Processing chromosome C8767\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:10,087] [Preprocessor.java:241] [main] Processing chromosome C8771\r\n", "Processing chromosome C8771\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:10,115] [Preprocessor.java:241] [main] Processing chromosome C8793\r\n", "Processing chromosome C8793\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:10,198] [Preprocessor.java:241] [main] Processing chromosome C8843\r\n", "Processing chromosome C8843\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:10,329] [Preprocessor.java:241] [main] Processing chromosome C8845\r\n", "Processing chromosome C8845\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:10,388] [Preprocessor.java:241] [main] Processing chromosome C8855\r\n", "Processing chromosome C8855\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:10,447] [Preprocessor.java:241] [main] Processing chromosome C8887\r\n", "Processing chromosome C8887\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:10,517] [Preprocessor.java:241] [main] Processing chromosome C8891\r\n", "Processing chromosome C8891\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:10,581] [Preprocessor.java:241] [main] Processing chromosome C89\r\n", "Processing chromosome C89\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:10,652] [Preprocessor.java:241] [main] Processing chromosome C8905\r\n", "Processing chromosome C8905\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:10,677] [Preprocessor.java:241] [main] Processing chromosome C8907\r\n", "Processing chromosome C8907\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:10,720] [Preprocessor.java:241] [main] Processing chromosome C897\r\n", "Processing chromosome C897\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:10,802] [Preprocessor.java:241] [main] Processing chromosome C8987\r\n", "Processing chromosome C8987\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:10,871] [Preprocessor.java:241] [main] Processing chromosome C9001\r\n", "Processing chromosome C9001\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:10,919] [Preprocessor.java:241] [main] Processing chromosome C901\r\n", "Processing chromosome C901\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:11,008] [Preprocessor.java:241] [main] Processing chromosome C9013\r\n", "Processing chromosome C9013\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:11,101] [Preprocessor.java:241] [main] Processing chromosome C9015\r\n", "Processing chromosome C9015\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:11,163] [Preprocessor.java:241] [main] Processing chromosome C9019\r\n", "Processing chromosome C9019\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:11,218] [Preprocessor.java:241] [main] Processing chromosome C9023\r\n", "Processing chromosome C9023\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:11,295] [Preprocessor.java:241] [main] Processing chromosome C9065\r\n", "Processing chromosome C9065\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:11,339] [Preprocessor.java:241] [main] Processing chromosome C9069\r\n", "Processing chromosome C9069\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:11,436] [Preprocessor.java:241] [main] Processing chromosome C909\r\n", "Processing chromosome C909\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:11,507] [Preprocessor.java:241] [main] Processing chromosome C9097\r\n", "Processing chromosome C9097\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:11,535] [Preprocessor.java:241] [main] Processing chromosome C91\r\n", "Processing chromosome C91\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:11,624] [Preprocessor.java:241] [main] Processing chromosome C9117\r\n", "Processing chromosome C9117\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:11,683] [Preprocessor.java:241] [main] Processing chromosome C913\r\n", "Processing chromosome C913\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:11,778] [Preprocessor.java:241] [main] Processing chromosome C915\r\n", "Processing chromosome C915\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:11,832] [Preprocessor.java:241] [main] Processing chromosome C9161\r\n", "Processing chromosome C9161\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:11,879] [Preprocessor.java:241] [main] Processing chromosome C9191\r\n", "Processing chromosome C9191\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:11,920] [Preprocessor.java:241] [main] Processing chromosome C9255\r\n", "Processing chromosome C9255\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:11,982] [Preprocessor.java:241] [main] Processing chromosome C9265\r\n", "Processing chromosome C9265\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:12,035] [Preprocessor.java:241] [main] Processing chromosome C9271\r\n", "Processing chromosome C9271\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:12,092] [Preprocessor.java:241] [main] Processing chromosome C9273\r\n", "Processing chromosome C9273\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:12,148] [Preprocessor.java:241] [main] Processing chromosome C9287\r\n", "Processing chromosome C9287\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:12,214] [Preprocessor.java:241] [main] Processing chromosome C9293\r\n", "Processing chromosome C9293\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:12,278] [Preprocessor.java:241] [main] Processing chromosome C9297\r\n", "Processing chromosome C9297\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:12,353] [Preprocessor.java:241] [main] Processing chromosome C9301\r\n", "Processing chromosome C9301\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:12,436] [Preprocessor.java:241] [main] Processing chromosome C9303\r\n", "Processing chromosome C9303\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:12,524] [Preprocessor.java:241] [main] Processing chromosome C9305\r\n", "Processing chromosome C9305\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:12,612] [Preprocessor.java:241] [main] Processing chromosome C9311\r\n", "Processing chromosome C9311\r\n", "INFO [2014-03-08 06:25:12,641] [Preprocessor.java:241] [main] Processing chromosome C9317\r\n", "Processing chromosome C9317\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:12,735] [Preprocessor.java:241] [main] Processing chromosome C9319\r\n", "Processing chromosome C9319\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:12,788] [Preprocessor.java:241] [main] Processing chromosome C937\r\n", "Processing chromosome C937\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:12,835] [Preprocessor.java:241] [main] Processing chromosome C9375\r\n", "Processing chromosome C9375\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:12,881] [Preprocessor.java:241] [main] Processing chromosome C9381\r\n", "Processing chromosome C9381\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:12,980] [Preprocessor.java:241] [main] Processing chromosome C9383\r\n", "Processing chromosome C9383\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:13,034] [Preprocessor.java:241] [main] Processing chromosome C9389\r\n", "Processing chromosome C9389\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:13,087] [Preprocessor.java:241] [main] Processing chromosome C9391\r\n", "Processing chromosome C9391\r\n", "INFO [2014-03-08 06:25:13,123] [Preprocessor.java:241] [main] Processing chromosome C9401\r\n", "Processing chromosome C9401\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:13,180] [Preprocessor.java:241] [main] Processing chromosome C9405\r\n", "Processing chromosome C9405\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:13,206] [Preprocessor.java:241] [main] Processing chromosome C9407\r\n", "Processing chromosome C9407\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:13,252] [Preprocessor.java:241] [main] Processing chromosome C9417\r\n", "Processing chromosome C9417\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:13,330] [Preprocessor.java:241] [main] Processing chromosome C9437\r\n", "Processing chromosome C9437\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:13,385] [Preprocessor.java:241] [main] Processing chromosome C9481\r\n", "Processing chromosome C9481\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:13,451] [Preprocessor.java:241] [main] Processing chromosome C9483\r\n", "Processing chromosome C9483\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:13,505] [Preprocessor.java:241] [main] Processing chromosome C9485\r\n", "Processing chromosome C9485\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:13,575] [Preprocessor.java:241] [main] Processing chromosome C9509\r\n", "Processing chromosome C9509\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:13,650] [Preprocessor.java:241] [main] Processing chromosome C9515\r\n", "Processing chromosome C9515\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:13,706] [Preprocessor.java:241] [main] Processing chromosome C9521\r\n", "Processing chromosome C9521\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:13,753] [Preprocessor.java:241] [main] Processing chromosome C9531\r\n", "Processing chromosome C9531\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:13,780] [Preprocessor.java:241] [main] Processing chromosome C9565\r\n", "Processing chromosome C9565\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:13,842] [Preprocessor.java:241] [main] Processing chromosome C9569\r\n", "Processing chromosome C9569\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:13,909] [Preprocessor.java:241] [main] Processing chromosome C9575\r\n", "Processing chromosome C9575\r\n", "INFO [2014-03-08 06:25:13,935] [Preprocessor.java:241] [main] Processing chromosome C9585\r\n", "Processing chromosome C9585\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:14,014] [Preprocessor.java:241] [main] Processing chromosome C9589\r\n", "Processing chromosome C9589\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:14,080] [Preprocessor.java:241] [main] Processing chromosome C9609\r\n", "Processing chromosome C9609\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:14,136] [Preprocessor.java:241] [main] Processing chromosome C9651\r\n", "Processing chromosome C9651\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:14,179] [Preprocessor.java:241] [main] Processing chromosome C9661\r\n", "Processing chromosome C9661\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:14,239] [Preprocessor.java:241] [main] Processing chromosome C9663\r\n", "Processing chromosome C9663\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:14,299] [Preprocessor.java:241] [main] Processing chromosome C9667\r\n", "Processing chromosome C9667\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:14,358] [Preprocessor.java:241] [main] Processing chromosome C9671\r\n", "Processing chromosome C9671\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:14,425] [Preprocessor.java:241] [main] Processing chromosome C9691\r\n", "Processing chromosome C9691\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:14,504] [Preprocessor.java:241] [main] Processing chromosome C9751\r\n", "Processing chromosome C9751\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:14,564] [Preprocessor.java:241] [main] Processing chromosome C9757\r\n", "Processing chromosome C9757\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:14,591] [Preprocessor.java:241] [main] Processing chromosome C9761\r\n", "Processing chromosome C9761\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:14,655] [Preprocessor.java:241] [main] 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"Processing chromosome C9879\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:15,029] [Preprocessor.java:241] [main] Processing chromosome C9917\r\n", "Processing chromosome C9917\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:15,095] [Preprocessor.java:241] [main] Processing chromosome C9947\r\n", "Processing chromosome C9947\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:15,150] [Preprocessor.java:241] [main] Processing chromosome C9949\r\n", "Processing chromosome C9949\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:15,196] [Preprocessor.java:241] [main] Processing chromosome C9951\r\n", "Processing chromosome C9951\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:15,266] [Preprocessor.java:241] [main] Processing chromosome C9963\r\n", "Processing chromosome C9963\r\n", "INFO [2014-03-08 06:25:15,304] [Preprocessor.java:241] [main] Processing chromosome C9971\r\n", "Processing chromosome C9971\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:15,329] [Preprocessor.java:241] [main] Processing chromosome scaffold1\r\n", "Processing chromosome scaffold1\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:15,371] [Preprocessor.java:241] [main] Processing chromosome scaffold10\r\n", "Processing chromosome scaffold10\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:15,432] [Preprocessor.java:241] [main] Processing chromosome scaffold100\r\n", "Processing chromosome scaffold100\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:15,639] [Preprocessor.java:241] [main] Processing chromosome scaffold1000\r\n", "Processing chromosome scaffold1000\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:15,752] [Preprocessor.java:241] [main] Processing chromosome scaffold1001\r\n", "Processing chromosome scaffold1001\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:15,813] [Preprocessor.java:241] [main] Processing chromosome scaffold1002\r\n", "Processing chromosome scaffold1002\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:15,845] [Preprocessor.java:241] [main] Processing chromosome scaffold1004\r\n", "Processing chromosome scaffold1004\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:15,956] [Preprocessor.java:241] [main] Processing chromosome scaffold1005\r\n", "Processing chromosome scaffold1005\r\n", "INFO [2014-03-08 06:25:15,972] [Preprocessor.java:241] [main] Processing chromosome scaffold1006\r\n", "Processing chromosome scaffold1006\r\n", "INFO [2014-03-08 06:25:15,984] [Preprocessor.java:241] [main] Processing chromosome scaffold1008\r\n", "Processing chromosome scaffold1008\r\n", "INFO [2014-03-08 06:25:15,991] [Preprocessor.java:241] [main] Processing chromosome scaffold1009\r\n", "Processing chromosome scaffold1009\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "." ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:16,308] [Preprocessor.java:241] [main] Processing chromosome scaffold101\r\n", "Processing chromosome scaffold101\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:16,426] [Preprocessor.java:241] [main] Processing chromosome scaffold1010\r\n", "Processing chromosome scaffold1010\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:16,468] [Preprocessor.java:241] [main] Processing chromosome scaffold1011\r\n", "Processing chromosome scaffold1011\r\n", "INFO [2014-03-08 06:25:16,483] [Preprocessor.java:241] [main] Processing chromosome scaffold1014\r\n", "Processing chromosome scaffold1014\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:16,607] [Preprocessor.java:241] [main] Processing chromosome scaffold1016\r\n", "Processing chromosome scaffold1016\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:16,654] [Preprocessor.java:241] [main] Processing chromosome scaffold1017\r\n", "Processing chromosome scaffold1017\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:17,007] [Preprocessor.java:241] [main] Processing chromosome scaffold1018\r\n", "Processing chromosome scaffold1018\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:17,163] [Preprocessor.java:241] [main] Processing chromosome scaffold102\r\n", "Processing chromosome scaffold102\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:17,517] 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"Processing chromosome scaffold1042\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:19,308] [Preprocessor.java:241] [main] Processing chromosome scaffold1043\r\n", "Processing chromosome scaffold1043\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:19,323] [Preprocessor.java:241] [main] Processing chromosome scaffold1044\r\n", "Processing chromosome scaffold1044\r\n", "INFO [2014-03-08 06:25:19,366] [Preprocessor.java:241] [main] Processing chromosome scaffold1045\r\n", "Processing chromosome scaffold1045\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:19,397] [Preprocessor.java:241] [main] Processing chromosome scaffold1047\r\n", "Processing chromosome scaffold1047\r\n", "INFO [2014-03-08 06:25:19,413] [Preprocessor.java:241] [main] Processing chromosome scaffold1048\r\n", "Processing chromosome scaffold1048\r\n", "INFO [2014-03-08 06:25:19,421] 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{ "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:34,231] [Preprocessor.java:241] [main] Processing chromosome scaffold1267\r\n", "Processing chromosome scaffold1267\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:34,363] [Preprocessor.java:241] [main] Processing chromosome scaffold1268\r\n", "Processing chromosome scaffold1268\r\n", "INFO [2014-03-08 06:25:34,384] [Preprocessor.java:241] [main] Processing chromosome scaffold1269\r\n", "Processing chromosome scaffold1269\r\n", "INFO [2014-03-08 06:25:34,391] [Preprocessor.java:241] [main] Processing chromosome scaffold127\r\n", "Processing chromosome scaffold127\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:34,426] [Preprocessor.java:241] [main] Processing chromosome scaffold1270\r\n", "Processing chromosome scaffold1270\r\n", "INFO [2014-03-08 06:25:34,446] [Preprocessor.java:241] [main] Processing chromosome 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chromosome scaffold1566\r\n", "Processing chromosome scaffold1566\r\n", "INFO [2014-03-08 06:25:50,807] [Preprocessor.java:241] [main] Processing chromosome scaffold1567\r\n", "Processing chromosome scaffold1567\r\n", "INFO [2014-03-08 06:25:50,836] [Preprocessor.java:241] [main] Processing chromosome scaffold1569\r\n", "Processing chromosome scaffold1569\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:50,952] [Preprocessor.java:241] [main] Processing chromosome scaffold157\r\n", "Processing chromosome scaffold157\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:51,177] [Preprocessor.java:241] [main] Processing chromosome scaffold1570\r\n", "Processing chromosome scaffold1570\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:51,207] [Preprocessor.java:241] [main] Processing chromosome scaffold1571\r\n", "Processing chromosome scaffold1571\r\n" ] }, { 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{ "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:57,766] [Preprocessor.java:241] [main] Processing chromosome scaffold1701\r\n", "Processing chromosome scaffold1701\r\n", "INFO [2014-03-08 06:25:57,776] [Preprocessor.java:241] [main] Processing chromosome scaffold1702\r\n", "Processing chromosome scaffold1702\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:57,797] [Preprocessor.java:241] [main] Processing chromosome scaffold1703\r\n", "Processing chromosome scaffold1703\r\n", "." ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:57,923] [Preprocessor.java:241] [main] Processing chromosome scaffold1704\r\n", "Processing chromosome scaffold1704\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:25:58,013] [Preprocessor.java:241] [main] Processing chromosome scaffold1705\r\n", "Processing chromosome scaffold1705\r\n" ] }, { "output_type": 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scaffold31454\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:26:23,971] [Preprocessor.java:241] [main] Processing chromosome scaffold31464\r\n", "Processing chromosome scaffold31464\r\n", "INFO [2014-03-08 06:26:23,975] [Preprocessor.java:241] [main] Processing chromosome scaffold31478\r\n", "Processing chromosome scaffold31478\r\n", "INFO [2014-03-08 06:26:23,990] [Preprocessor.java:241] [main] Processing chromosome scaffold31484\r\n", "Processing chromosome scaffold31484\r\n", "INFO [2014-03-08 06:26:24,013] [Preprocessor.java:241] [main] Processing chromosome scaffold315\r\n", "Processing chromosome scaffold315\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:26:24,196] [Preprocessor.java:241] [main] Processing chromosome scaffold31512\r\n", "Processing chromosome scaffold31512\r\n", "INFO [2014-03-08 06:26:24,218] [Preprocessor.java:241] [main] Processing chromosome scaffold31514\r\n", "Processing chromosome scaffold31514\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:26:24,254] [Preprocessor.java:241] [main] Processing chromosome scaffold31524\r\n", "Processing chromosome scaffold31524\r\n", "INFO [2014-03-08 06:26:24,267] [Preprocessor.java:241] [main] Processing chromosome scaffold31534\r\n", "Processing chromosome scaffold31534\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:26:24,292] [Preprocessor.java:241] [main] Processing chromosome scaffold31538\r\n", "Processing chromosome scaffold31538\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:26:24,350] [Preprocessor.java:241] [main] Processing chromosome scaffold31556\r\n", "Processing chromosome scaffold31556\r\n", "INFO [2014-03-08 06:26:24,382] [Preprocessor.java:241] [main] Processing chromosome scaffold316\r\n", "Processing chromosome scaffold316\r\n", "INFO [2014-03-08 06:26:24,385] 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}, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:26:25,345] [Preprocessor.java:241] [main] Processing chromosome scaffold32300\r\n", "Processing chromosome scaffold32300\r\n", "INFO [2014-03-08 06:26:25,380] [Preprocessor.java:241] [main] Processing chromosome scaffold32330\r\n", "Processing chromosome scaffold32330\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:26:25,399] [Preprocessor.java:241] [main] Processing chromosome scaffold32342\r\n", "Processing chromosome scaffold32342\r\n", "INFO [2014-03-08 06:26:25,409] [Preprocessor.java:241] [main] Processing chromosome scaffold32346\r\n", "Processing chromosome scaffold32346\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:26:25,444] [Preprocessor.java:241] [main] Processing chromosome scaffold32356\r\n", "Processing chromosome scaffold32356\r\n", "INFO [2014-03-08 06:26:25,469] [Preprocessor.java:241] [main] Processing 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}, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:26:28,909] [Preprocessor.java:241] [main] Processing chromosome scaffold34008\r\n", "Processing chromosome scaffold34008\r\n", "INFO [2014-03-08 06:26:28,918] [Preprocessor.java:241] [main] Processing chromosome scaffold34016\r\n", "Processing chromosome scaffold34016\r\n", "INFO [2014-03-08 06:26:28,928] [Preprocessor.java:241] [main] Processing chromosome scaffold34018\r\n", "Processing chromosome scaffold34018\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:26:28,966] [Preprocessor.java:241] [main] Processing chromosome scaffold34020\r\n", "Processing chromosome scaffold34020\r\n", "INFO [2014-03-08 06:26:28,969] [Preprocessor.java:241] [main] Processing chromosome scaffold34026\r\n", "Processing chromosome scaffold34026\r\n", "INFO [2014-03-08 06:26:29,003] [Preprocessor.java:241] [main] Processing chromosome scaffold34032\r\n", "Processing chromosome 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[Preprocessor.java:241] [main] Processing chromosome scaffold35286\r\n", "Processing chromosome scaffold35286\r\n", "INFO [2014-03-08 06:26:32,296] [Preprocessor.java:241] [main] Processing chromosome scaffold35296\r\n", "Processing chromosome scaffold35296\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:26:32,322] [Preprocessor.java:241] [main] Processing chromosome scaffold353\r\n", "Processing chromosome scaffold353\r\n", "INFO [2014-03-08 06:26:32,334] [Preprocessor.java:241] [main] Processing chromosome scaffold35306\r\n", "Processing chromosome scaffold35306\r\n", "INFO [2014-03-08 06:26:32,359] [Preprocessor.java:241] [main] Processing chromosome scaffold35310\r\n", "Processing chromosome scaffold35310\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:26:32,364] [Preprocessor.java:241] [main] Processing chromosome scaffold35330\r\n", "Processing chromosome scaffold35330\r\n", "INFO [2014-03-08 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}, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:26:41,206] [Preprocessor.java:241] [main] Processing chromosome scaffold37944\r\n", "Processing chromosome scaffold37944\r\n", "INFO [2014-03-08 06:26:41,225] [Preprocessor.java:241] [main] Processing chromosome scaffold37946\r\n", "Processing chromosome scaffold37946\r\n", "INFO [2014-03-08 06:26:41,240] [Preprocessor.java:241] [main] Processing chromosome scaffold37966\r\n", "Processing chromosome scaffold37966\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:26:41,258] [Preprocessor.java:241] [main] Processing chromosome scaffold37968\r\n", "Processing chromosome scaffold37968\r\n", "INFO [2014-03-08 06:26:41,266] [Preprocessor.java:241] [main] Processing chromosome scaffold37972\r\n", "Processing chromosome scaffold37972\r\n", "INFO [2014-03-08 06:26:41,291] [Preprocessor.java:241] [main] Processing chromosome scaffold37990\r\n", "Processing chromosome 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[main] Processing chromosome scaffold999\r\n", "Processing chromosome scaffold999\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "INFO [2014-03-08 06:27:50,178] [TDFWriter.java:304] [main] Group idx: 1\r\n", "Group idx: 1\r\n" ] }, { "output_type": "stream", "stream": "stdout", "text": [ "100.0% \r\n", "Done\r\n" ] } ], "prompt_number": 11 }, { "cell_type": "heading", "level": 4, "metadata": {}, "source": [ "E" ] }, { "cell_type": "code", "collapsed": false, "input": [ "Run with SE worflow that includes quality read step" ], "language": "python", "metadata": {}, "outputs": [] }, { "cell_type": "markdown", "metadata": {}, "source": [ "---" ] }, { "cell_type": "heading", "level": 1, "metadata": {}, "source": [ "CLC Model" ] }, { "cell_type": "heading", "level": 2, "metadata": {}, "source": [ "RNA-Seq_DH3" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "RNA-Seq DH3; pooled gill, Drayton Harbor" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "[Direct Link](https://sqlshare.escience.washington.edu/sqlshare#s=query/sr320%40washington.edu/RNA-Seq_DH3)" ] }, { "cell_type": "code", "collapsed": false, "input": [ "!python /Users/sr320/sqlshare-pythonclient/tools/fetchdata.py -s \"set rowcount 10 SELECT * FROM [sr320@washington.edu].[RNA-Seq_DH3]\" -f tsv -o /Volumes/web/cnidarian/pDOD_DH3.txt\n" ], "language": "python", "metadata": {}, "outputs": [], "prompt_number": 1 }, { "cell_type": "code", "collapsed": false, "input": [ "!head -4 /Volumes/web/cnidarian/pDOD_DH3.txt" ], "language": "python", "metadata": {}, "outputs": [ { "output_type": "stream", "stream": "stdout", "text": [ "Feature ID\tExpression values\tTranscripts annotated\tDetected transcripts\tExon length\tUnique gene reads\tTotal gene reads\tUnique exon reads\tTotal exon reads\tRatio of unique to total (exon reads)\tUnique exon-exon reads\tTotal exon-exon reads\tUnique intron-exon reads\tTotal intron-exon reads\tExons\tPutative exons\tRPKM\tMedian coverage\tChromosome\tChromosome region start\tChromosome region end\r", "\r\n", "CGI_10000001\t9.471\t1\t1\t351\t0\t31\t0\t31\t0\t0\t0\t0\t0\t1\t0\t9.471\t0\tC16582\t35\t385\r", "\r\n", "CGI_10000002\t8.695\t1\t1\t333\t27\t27\t27\t27\t1\t0\t0\t0\t0\t1\t0\t8.695\t3\tC17212\t31\t363\r", "\r\n", "CGI_10000003\t3.763\t1\t1\t228\t5\t8\t5\t8\t0.625\t0\t0\t0\t0\t1\t0\t3.763\t1\tC17316\t30\t257\r", "\r\n" ] } ], "prompt_number": 12 }, { "cell_type": "code", "collapsed": false, "input": [], "language": "python", "metadata": {}, "outputs": [] } ], "metadata": {} } ] }