##fileformat=VCFv4.1 ##fileDate=20181123 ##source=strelka ##source_version=2.0.17.strelka1 ##startTime=Fri Nov 23 12:09:41 2018 ##reference=file:///gpfs/public/reference_genomes/hs37/hs37d5.fa ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##content=strelka somatic indel calls ##germlineIndelTheta=0.0001 ##priorSomaticIndelRate=1e-06 ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FILTER= ##FILTER= ##FILTER= ##FILTER= ##FILTER= ##cmdline=/gpfs/public/tools/strelka/v2.0.17/libexec/consolidateResults.pl --config=/gpfs/ngs-samples/mutation-signatures/celllines/MCF10A_bulk_clones/Carbopl/AB18Jun40/strelka/config/run.config.ini ##maxDepth_1=125.698489804855 ##maxDepth_2=95.3192904804602 ##maxDepth_3=95.7175299369778 ##maxDepth_4=91.2183460303317 ##maxDepth_5=110.754551753378 ##maxDepth_6=95.9917300429871 ##maxDepth_7=101.673849003483 ##maxDepth_8=119.776254453092 ##maxDepth_9=87.5201358283167 ##maxDepth_10=92.5267117084755 ##maxDepth_11=95.2975232822487 ##maxDepth_12=93.6127843377638 ##maxDepth_13=106.806919535978 ##maxDepth_14=94.2605979371962 ##maxDepth_15=91.5759736431585 ##maxDepth_16=89.8715911932943 ##maxDepth_17=88.3066355113637 ##maxDepth_18=96.1926321026461 ##maxDepth_19=89.9947578869158 ##maxDepth_20=141.01658160453 ##maxDepth_21=97.2157405427725 ##maxDepth_22=87.2403711812262 ##maxDepth_X=90.0707735894559 ##maxDepth_Y=1.03375448763818 ##maxDepth_MT=29769.0977788508 ##maxDepth_GL000207.1=99.9537775692163 ##maxDepth_GL000226.1=1679.07029584222 ##maxDepth_GL000229.1=144.5824335861 ##maxDepth_GL000231.1=151.889432556781 ##maxDepth_GL000210.1=18.3742658255384 ##maxDepth_GL000239.1=36.3410300378429 ##maxDepth_GL000235.1=192.20850496026 ##maxDepth_GL000201.1=5.41623326325108 ##maxDepth_GL000247.1=25.8058316402174 ##maxDepth_GL000245.1=14.5281165588933 ##maxDepth_GL000197.1=2.9075927174646 ##maxDepth_GL000203.1=29.1090724838658 ##maxDepth_GL000246.1=8.74846674005347 ##maxDepth_GL000249.1=1.86582515194016 ##maxDepth_GL000196.1=3.69985095338439 ##maxDepth_GL000248.1=24.5833961695069 ##maxDepth_GL000244.1=20.7667109118686 ##maxDepth_GL000238.1=25.5806354690904 ##maxDepth_GL000202.1=47.5088896092562 ##maxDepth_GL000234.1=174.021242999186 ##maxDepth_GL000232.1=165.328397126833 ##maxDepth_GL000206.1=2.89441720933636 ##maxDepth_GL000240.1=101.453556864522 ##maxDepth_GL000236.1=11.1737015309773 ##maxDepth_GL000241.1=209.514115581704 ##maxDepth_GL000243.1=65.6015089637987 ##maxDepth_GL000242.1=5.74089561840866 ##maxDepth_GL000230.1=52.7646654917489 ##maxDepth_GL000237.1=139.205245601413 ##maxDepth_GL000233.1=48.5214949609281 ##maxDepth_GL000204.1=65.4181527487394 ##maxDepth_GL000198.1=58.5071099517123 ##maxDepth_GL000208.1=221.543926463766 ##maxDepth_GL000191.1=21.4482538310486 ##maxDepth_GL000227.1=8.93162166793899 ##maxDepth_GL000228.1=39.8389405204461 ##maxDepth_GL000214.1=541.795168387575 ##maxDepth_GL000221.1=67.3455086005521 ##maxDepth_GL000209.1=29.5046020267766 ##maxDepth_GL000218.1=246.148299378828 ##maxDepth_GL000220.1=3033.38578633144 ##maxDepth_GL000213.1=16.2298723202163 ##maxDepth_GL000211.1=84.9903821908433 ##maxDepth_GL000199.1=190.255477589272 ##maxDepth_GL000217.1=45.4243939842811 ##maxDepth_GL000216.1=144.354527725864 ##maxDepth_GL000215.1=4.29211510040859 ##maxDepth_GL000205.1=254.846174994845 ##maxDepth_GL000219.1=192.795544593132 ##maxDepth_GL000224.1=383.792479395413 ##maxDepth_GL000223.1=2.10704053642182 ##maxDepth_GL000195.1=343.566644431808 ##maxDepth_GL000212.1=156.860129081977 ##maxDepth_GL000222.1=18.0335543532358 ##maxDepth_GL000200.1=0.00877375892212687 ##maxDepth_GL000193.1=216.219464774039 ##maxDepth_GL000194.1=136.365181831001 ##maxDepth_GL000225.1=140.502578454632 ##maxDepth_GL000192.1=94.987510411035 ##maxDepth_NC_007605=0 ##maxDepth_hs37d5=135.849087550625 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NORMAL TUMOR Transcript Strand cDNA GeneSymbol CHANGE_TYPE AA_Change Ref Context Var Context 1 5288645 . TG T . PASS IC=1;IHP=3;NT=ref;QSI=77;QSI_NT=77;RC=2;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 37:37:37,37:0,0:0,0:35.22:0.00:0.00 40:40:14,14:18,18:9,9:38.66:0.00:0.00 + AGGTTTGGCTT 1 17198108 . CT C . PASS IC=0;IHP=4;NT=ref;QSI=22;QSI_NT=22;RC=1;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 49:49:49,49:0,0:0,0:48.4:0.07:0.00 52:52:43,44:5,7:4,3:47.63:0.00:0.00 + GACCCCTGAGC 1 34905582 . G GA . PASS IC=3;IHP=3;NT=ref;QSI=43;QSI_NT=43;RC=2;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 36:36:35,35:0,0:0,0:36.98:0.77:0.00 30:30:15,15:9,10:5,4:32.39:3.84:0.00 + TTTCAGAACAC 1 71240979 . TG T . PASS IC=1;IHP=7;NT=ref;QSI=57;QSI_NT=57;RC=2;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 36:36:35,35:0,0:0,0:39.46:0.01:0.00 34:34:15,15:11,13:8,7:33.47:0.00:0.00 + ATTTTTGGCTT 1 73638531 . T TA . PASS IC=5;IHP=4;NT=ref;QSI=65;QSI_NT=65;RC=4;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:32,32:0,0:0,0:32.04:0.14:0.00 28:28:12,12:15,16:2,2:35.15:0.00:0.00 + AGCCTTAAAAG 1 83005655 . TA T . PASS IC=1;IHP=2;NT=ref;QSI=48;QSI_NT=48;RC=2;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 31:31:31,31:0,0:0,0:31.4:0.45:0.00 29:29:16,16:12,12:2,2:31.72:0.00:0.00 + TAAATTAATGA 1 87082950 . GA G . PASS IC=0;IHP=3;NT=ref;QSI=43;QSI_NT=43;RC=1;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 27:27:27,27:0,0:0,0:25.43:0.00:0.00 28:28:14,14:11,11:3,3:28.44:0.00:0.00 + TTCAAGATGAG 1 89258193 . G GT . PASS IC=1;IHP=4;NT=ref;QSI=48;QSI_NT=48;RC=0;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:28,29:0,0:0,0:26.63:0.26:0.00 40:40:20,21:16,16:4,3:44.29:0.00:0.00 10 + CCDS714.1xxxPKN2 CAGGGGCTAGG 1 105102870 . AC A . PASS IC=3;IHP=5;NT=ref;QSI=61;QSI_NT=61;RC=4;RU=C;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 31:31:30,30:0,0:1,1:31.35:0.50:0.00 26:26:7,8:11,12:7,6:31.66:0.00:0.00 + CTCTCACCCCT 1 105277381 . TA T . PASS IC=2;IHP=3;NT=ref;QSI=43;QSI_NT=43;RC=3;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 25:25:25,25:0,0:0,0:24.92:0.00:0.00 33:33:16,16:13,13:5,6:31.02:0.00:0.00 + AGCTTTAAATC 1 106871753 . AG A . PASS IC=1;IHP=3;NT=ref;QSI=27;QSI_NT=27;RC=2;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 26:26:26,26:0,0:0,0:24.91:0.00:0.00 40:40:28,28:10,10:2,2:38.01:0.00:0.00 + CAAGCAGGAGA 1 120239646 . GAGCAACAGTGGACTCCACCC G . PASS IC=0;IHP=5;NT=ref;QSI=28;QSI_NT=28;RC=1;RU=AGCAACAGTGGACTCCACCC;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 40:40:41,41:0,0:1,1:39.46:0.09:0.00 29:29:17,18:5,5:9,8:26.21:0.00:0.00 + TTGCTGAGCAA 1 120575408 . CACTG C . PASS IC=0;IHP=2;NT=ref;QSI=41;QSI_NT=41;RC=1;RU=ACTG;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 87:87:82,90:0,0:5,5:85.39:0.01:0.00 75:75:61,68:11,11:11,12:79.7:0.00:0.00 10 - CCDS908.1xxxNOTCH2 CATAGTCAGTG 1 120616145 . TAAAC T . PASS IC=0;IHP=5;NT=ref;QSI=28;QSI_NT=28;RC=1;RU=AAAC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 56:56:54,54:0,0:0,0:57.48:0.33:0.00 44:44:33,34:6,8:4,4:43.6:0.00:0.00 + AAACATAAACA 1 142600191 . AT A . PASS IC=7;IHP=9;NT=ref;QSI=21;QSI_NT=21;RC=8;RU=T;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 84:84:79,81:1,1:4,4:86.15:0.28:0.00 74:74:54,59:11,11:8,8:78.17:0.00:0.00 + TATCTATTTTT 1 142652835 . TACC T . PASS IC=0;IHP=5;NT=ref;QSI=44;QSI_NT=44;RC=1;RU=ACC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 68:68:70,72:0,0:1,1:68.51:0.01:0.00 53:53:36,39:10,11:10,9:54.61:0.01:0.00 + TTATTTACCAC 1 144001640 . A AC . PASS IC=2;IHP=3;NT=ref;QSI=39;QSI_NT=39;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 76:76:75,75:0,0:1,1:80.65:0.01:0.00 58:58:40,41:7,7:11,11:75.08:0.00:0.00 + TCCCAACACAT 1 146969286 . G GT . PASS IC=5;IHP=5;NT=ref;QSI=79;QSI_NT=79;RC=4;RU=T;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 57:57:54,55:0,0:3,2:55.21:1.08:0.00 59:59:31,33:22,22:6,6:60.6:0.01:0.00 + ACCAGGTTTTC 1 149225581 . TCTC T . PASS IC=0;IHP=4;NT=ref;QSI=25;QSI_NT=25;RC=1;RU=CTC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 45:45:45,45:0,0:0,0:50.17:0.36:0.00 83:83:60,65:12,13:11,7:82.17:0.15:0.00 + AGAAATCTCCA 1 153768624 . G GC . PASS IC=1;IHP=7;NT=ref;QSI=72;QSI_NT=72;RC=0;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 50:50:50,50:0,0:0,0:53.13:0.00:0.00 60:60:30,30:20,20:10,10:63.93:0.24:0.00 + GTTGTGGGGGG 1 158400147 . C CA . PASS IC=1;IHP=2;NT=ref;QSI=28;QSI_NT=28;RC=0;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 60:60:60,60:0,0:0,0:61.7:0.14:0.00 38:38:31,31:4,4:3,3:41.23:0.00:0.00 + GATTGCCTGTG 1 158433686 . ATAGTTATAC A . PASS IC=0;IHP=4;NT=ref;QSI=48;QSI_NT=48;RC=1;RU=TAGTTATAC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 48:48:47,48:0,0:2,1:44.79:0.01:0.00 49:49:34,34:13,13:4,4:49.89:0.00:0.00 + TCTTTATAGTT 1 161004680 . G GA . PASS IC=1;IHP=7;NT=ref;QSI=84;QSI_NT=83;RC=0;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 43:43:44,44:0,0:2,2:42.91:0.00:0.00 63:63:33,33:26,26:6,6:64.08:0.00:0.00 + TTTGTGGGGGG 1 170149098 . CA C . PASS IC=2;IHP=4;NT=ref;QSI=66;QSI_NT=66;RC=3;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 47:47:47,49:0,0:0,0:51.33:0.00:0.00 40:40:21,21:15,15:4,4:35.29:0.00:0.00 + GTATACAAATG 1 171097491 . GCCCA G . PASS IC=0;IHP=7;NT=ref;QSI=29;QSI_NT=29;RC=1;RU=CCCA;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 49:49:49,49:0,0:1,1:51.09:0.34:0.00 52:52:40,41:9,9:2,2:55.39:0.00:0.00 + TTTAGGCCCAC 1 179510812 . TA T . PASS IC=1;IHP=4;NT=ref;QSI=25;QSI_NT=25;RC=2;RU=A;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 38:38:39,39:0,0:1,1:42.81:0.01:0.00 51:51:38,39:9,9:6,6:48.73:3.11:0.00 10 + CCDS30948.1xxxAXDND1 CATAATAATAT 1 182851577 . AG A . PASS IC=1;IHP=3;NT=ref;QSI=50;QSI_NT=50;RC=2;RU=G;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 42:42:43,43:0,0:0,0:43.47:0.21:0.00 65:65:40,41:17,18:5,4:63.56:0.00:0.00 10 + CCDS41444.1xxxDHX9 CCAGTAGGTGT 1 185660208 . TG T . PASS IC=3;IHP=4;NT=ref;QSI=40;QSI_NT=40;RC=4;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 50:50:49,50:0,0:0,0:46.65:0.34:0.00 52:52:34,34:11,11:6,7:52.47:0.00:0.00 + AGAGATGGGGT 1 188373244 . AT A . PASS IC=7;IHP=9;NT=ref;QSI=42;QSI_NT=42;RC=8;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 49:49:46,46:0,0:3,3:50.07:0.00:0.00 37:37:21,21:9,9:8,8:42.62:0.00:0.00 + AACCTATTTTT 1 189994141 . TAA T . PASS IC=0;IHP=5;NT=ref;QSI=36;QSI_NT=36;RC=2;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 52:52:51,53:0,0:0,0:48.13:0.07:0.00 35:35:27,28:8,8:0,0:39.43:0.00:0.00 + TTTTGTAAGTT 1 196013665 . ACTT A . PASS IC=1;IHP=7;NT=ref;QSI=51;QSI_NT=51;RC=2;RU=CTT;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 42:42:42,42:0,0:0,0:47.64:0.72:0.00 55:55:33,33:16,16:5,6:56.25:0.40:0.00 + AATTTACTTCT 1 196681728 . CT C . PASS IC=6;IHP=10;NT=ref;QSI=51;QSI_NT=51;RC=7;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 39:39:34,34:0,0:4,4:37.47:0.00:0.00 45:45:20,20:14,14:9,10:41.08:0.00:0.00 10 + CCDS1385.1xxxCFH AATTTCTTTTT 1 197919892 . G GT . PASS IC=6;IHP=5;NT=ref;QSI=77;QSI_NT=76;RC=5;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 53:53:50,51:0,0:3,3:49.74:0.01:0.00 48:48:22,22:18,19:7,7:48.16:0.00:0.00 + AGTAGGTTTTT 1 199498671 . T TCTCTCTCA . PASS IC=1;IHP=2;NT=ref;QSI=20;QSI_NT=20;RC=0;RU=CTCTCTCA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 56:56:47,48:0,0:9,8:53.66:1.69:0.00 42:42:30,31:8,8:4,3:37.81:0.00:0.00 + CTCTCTCTCTC 1 203089889 . GAGGAGCTGGTGCTGGGAGA G . PASS IC=0;IHP=3;NT=ref;QSI=30;QSI_NT=30;RC=1;RU=AGGAGCTGGTGCTGGGAGA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 64:64:71,71:0,0:0,0:67.5:1.07:0.00 42:42:40,41:5,5:5,4:51.28:0.00:0.00 + ATGAAGAGGAG 1 209208613 . GCTGTAC G . PASS IC=0;IHP=2;NT=ref;QSI=34;QSI_NT=34;RC=1;RU=CTGTAC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 71:71:72,73:0,0:1,1:69.02:0.00:0.00 60:60:50,50:8,8:11,11:67.18:0.00:0.00 + CCTGAGCTGTA 1 210630430 . TCAGTGTGTCTG T . PASS IC=0;IHP=6;NT=ref;QSI=24;QSI_NT=24;RC=1;RU=CAGTGTGTCTG;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 58:58:58,58:0,0:2,2:57.55:0.67:0.00 76:76:66,67:4,4:17,16:70.44:0.00:0.00 10 + CCDS1495.1xxxHHAT TTTGTTCAGTG 1 216539924 . TC T . PASS IC=7;IHP=8;NT=ref;QSI=54;QSI_NT=54;RC=8;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 69:69:66,66:0,0:3,3:69.12:0.47:0.00 66:66:41,41:14,14:13,13:65.77:0.00:0.00 10 - CCDS1516.1xxxUSH2A GGGGGGGACAT 1 218124562 . T TG . PASS IC=8;IHP=10;NT=ref;QSI=39;QSI_NT=39;RC=7;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 54:54:53,53:0,0:1,1:56.48:0.25:0.00 71:71:43,43:12,12:16,16:71.56:0.00:0.00 + CAGGGTGGGGG 1 218372761 . CA C . PASS IC=5;IHP=6;NT=ref;QSI=74;QSI_NT=74;RC=6;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 71:71:66,66:0,0:4,4:70.55:0.01:0.00 62:62:36,36:18,20:8,7:59.84:0.00:0.00 + AATGTCAAAAA 1 218848540 . A ATATC . PASS IC=1;IHP=2;NT=ref;QSI=43;QSI_NT=43;RC=0;RU=TATC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 56:56:56,56:0,0:0,0:46.24:6.53:0.00 26:26:16,19:7,11:5,2:24.12:2.29:0.00 + TATATATCTAT 1 219446874 . TG T . PASS IC=1;IHP=3;NT=ref;QSI=94;QSI_NT=94;RC=2;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 78:78:77,78:0,0:2,2:76.98:0.00:0.00 56:56:27,27:18,18:11,11:55.75:0.00:0.00 + TTAAATGGCTA 1 219808597 . G GT . PASS IC=2;IHP=5;NT=ref;QSI=40;QSI_NT=40;RC=1;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 71:71:71,75:0,0:0,0:72.62:1.45:0.00 66:66:50,53:11,12:5,5:65.32:0.06:0.00 + GGGAGGTGGAG 1 220845786 . AC A . PASS IC=3;IHP=4;NT=ref;QSI=27;QSI_NT=27;RC=4;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 45:45:44,44:0,0:1,1:43.32:0.38:0.00 75:75:57,57:12,12:5,5:74.34:0.00:0.00 + TTTCAACCCCA 1 222487911 . TAGGAAACCTAAA T . PASS IC=0;IHP=4;NT=ref;QSI=26;QSI_NT=26;RC=1;RU=AGGAAACCTAAA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 61:61:64,64:0,0:2,2:62.65:0.62:0.00 78:78:74,76:4,4:9,8:78.33:0.00:0.00 + ACTCATAGGAA 1 223118578 . CT C . PASS IC=2;IHP=3;NT=ref;QSI=95;QSI_NT=95;RC=3;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 86:86:81,82:0,0:4,4:81.25:0.00:0.00 80:80:47,47:24,24:9,10:76.4:0.00:0.00 10 + CCDS1536.1xxxDISP1 ACTGGCTTTGA 1 224110637 . ACT A . PASS IC=3;IHP=2;NT=ref;QSI=40;QSI_NT=40;RC=4;RU=CT;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 75:75:75,77:0,0:1,1:74.01:0.00:0.00 30:30:22,24:5,5:2,2:33.1:0.00:0.00 + AATTAACTCTC 1 226487974 . AGGTGT A . PASS IC=0;IHP=4;NT=ref;QSI=21;QSI_NT=21;RC=1;RU=GGTGT;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 49:49:49,49:0,0:1,1:49.61:0.00:0.00 80:80:72,72:5,5:6,7:83.05:0.00:0.00 10 - CCDS1553.1xxxLIN9 GCCACCACACC 1 227728291 . ATAGGT A . PASS IC=0;IHP=3;NT=ref;QSI=29;QSI_NT=29;RC=1;RU=TAGGT;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 66:66:67,67:0,0:2,2:71.79:0.17:0.00 72:72:64,64:4,4:7,7:64.11:0.00:0.00 + AGTGAATAGGT 1 231140529 . G GT . PASS IC=2;IHP=6;NT=ref;QSI=74;QSI_NT=74;RC=1;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 88:88:88,88:0,0:0,0:82.49:0.00:0.00 50:50:31,31:14,14:4,4:52.29:0.00:0.00 + AAGGGGTGGAA 1 233175708 . TA T . PASS IC=2;IHP=4;NT=ref;QSI=53;QSI_NT=53;RC=3;RU=A;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 70:70:71,71:0,0:0,0:72.52:1.23:0.00 64:64:44,45:14,14:7,7:58.53:0.00:0.00 10 - CCDS44335.1xxxPCNXL2 AATATTTACAG 1 237475016 . TAACCCA T . PASS IC=0;IHP=5;NT=ref;QSI=27;QSI_NT=27;RC=1;RU=AACCCA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 61:61:62,62:0,0:1,1:59.76:0.00:0.00 56:56:46,46:4,4:9,9:51.37:0.00:0.00 10 + CCDS55691.1xxxRYR2 TGAAGTAACCC 1 242892566 . GT G . PASS IC=0;IHP=2;NT=ref;QSI=76;QSI_NT=76;RC=1;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 67:67:67,67:0,0:0,0:66.06:0.78:0.00 86:86:51,51:23,24:12,13:79.54:0.00:0.00 + ATTTGGTAACT 1 244036157 . AC A . PASS IC=0;IHP=10;NT=ref;QSI=47;QSI_NT=47;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 61:61:60,60:0,0:1,1:62.98:0.61:0.00 60:60:42,43:14,14:6,6:66.17:0.00:0.00 + CAACAACAAAA 2 641098 . AT A . PASS IC=1;IHP=3;NT=ref;QSI=48;QSI_NT=48;RC=2;RU=T;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:35,36:0,0:0,0:32.3:1.46:0.00 25:25:11,12:9,9:5,5:24.59:0.00:0.00 + ATACTATTGTA 2 2210104 . TC T . PASS IC=0;IHP=9;NT=ref;QSI=61;QSI_NT=61;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:35,35:0,0:0,0:35.89:0.00:0.00 25:25:11,11:12,12:2,2:24.4:0.00:0.00 + CTTTTTCTTTT 2 4618472 . G GT . PASS IC=7;IHP=6;NT=ref;QSI=79;QSI_NT=78;RC=6;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 37:37:34,35:0,0:3,3:38.72:0.00:0.00 31:31:8,8:16,16:6,6:30.5:0.00:0.00 + GTTCAGTTTTT 2 13991856 . GC G . PASS IC=0;IHP=4;NT=ref;QSI=62;QSI_NT=62;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 34:34:34,34:0,0:0,0:36.69:0.01:0.00 37:37:15,15:15,15:7,7:32.92:0.00:0.00 + AGGCAGCAAAG 2 28102816 . CA C . PASS IC=5;IHP=6;NT=ref;QSI=53;QSI_NT=53;RC=6;RU=A;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:33,33:0,0:0,0:32.9:0.00:0.00 29:29:15,16:13,13:1,1:31.31:0.00:0.00 10 - CCDS1762.1xxxRBKS GTTTTTTGGAA 2 32804660 . G GT . PASS IC=2;IHP=5;NT=ref;QSI=68;QSI_NT=68;RC=1;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 30:30:30,31:0,0:0,0:31.2:0.01:0.00 42:42:13,14:22,23:5,5:36.92:0.00:0.00 10 + CCDS33175.2xxxBIRC6 TTGAGGTGGGA 2 49315586 . AG A . PASS IC=0;IHP=3;NT=ref;QSI=58;QSI_NT=58;RC=1;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:33,33:0,0:0,0:33.77:0.01:0.00 35:35:15,15:14,14:5,5:36.01:0.00:0.00 10 - CCDS1843.1xxxFSHR TCAATTCTGAA 2 50109680 . G GT . PASS IC=5;IHP=5;NT=ref;QSI=65;QSI_NT=65;RC=4;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:31,31:0,0:1,1:30.33:0.31:0.00 35:35:12,12:16,16:9,9:37.05:0.00:0.00 + AGGTGGTTTTA 2 50865681 . TC T . PASS IC=0;IHP=3;NT=ref;QSI=79;QSI_NT=79;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 39:39:39,39:0,0:0,0:37.9:0.00:0.00 31:31:13,13:17,17:0,0:29.85:0.00:0.00 10 - CCDS46282.1xxxNRXN1 ATTCAAGAGGT 2 52109215 . T TA . PASS IC=2;IHP=3;NT=ref;QSI=83;QSI_NT=81;RC=1;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 39:39:38,38:0,0:0,0:36.54:0.00:0.00 39:39:16,16:21,21:1,2:38.9:0.00:0.00 + ATATATACCCA 2 70112431 . TAATG T . PASS IC=0;IHP=5;NT=ref;QSI=23;QSI_NT=23;RC=1;RU=AATG;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 39:39:40,40:0,0:0,0:39.68:0.18:0.00 25:25:17,18:4,4:4,3:25.91:0.00:0.00 + AACTGTAATGT 2 75851406 . CT C . PASS IC=6;IHP=8;NT=ref;QSI=68;QSI_NT=68;RC=7;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:31,31:0,0:1,1:33.39:0.24:0.00 32:32:11,11:17,17:4,4:32.7:0.00:0.00 + TTTATCTTTTT 2 83849647 . CA C . PASS IC=0;IHP=1;NT=ref;QSI=74;QSI_NT=74;RC=1;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:35,35:0,0:0,0:35.96:0.32:0.00 43:43:18,18:21,21:2,2:41.58:0.00:0.00 + CTGAGCAGTAG 2 87597911 . AT A . PASS IC=2;IHP=3;NT=ref;QSI=75;QSI_NT=75;RC=3;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 61:61:61,67:0,0:1,1:65.67:0.87:0.00 41:41:18,21:13,16:10,10:36.61:0.00:0.00 + AAGCCATTTAC 2 90372485 . A AT . PASS IC=2;IHP=1;NT=ref;QSI=31;QSI_NT=31;RC=1;RU=T;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 39:39:39,43:0,0:0,0:39.14:0.43:0.00 67:67:45,64:13,15:8,7:61.44:0.71:0.00 + ATTTGATGATG 2 97867770 . TTC T . PASS IC=1;IHP=5;NT=ref;QSI=47;QSI_NT=47;RC=2;RU=TC;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 68:68:66,66:0,0:1,1:64.92:0.06:0.00 86:86:60,61:16,16:11,11:90.75:0.00:0.00 10 + CCDS54379.1xxxANKRD36 CGCTTTTCTCA 2 119353256 . GA G . PASS IC=0;IHP=4;NT=ref;QSI=67;QSI_NT=67;RC=1;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:32,32:0,0:0,0:32.91:0.00:0.00 32:32:12,12:16,16:3,3:35.39:0.00:0.00 + CATTTGAGAAA 2 128348301 . CCA C . PASS IC=1;IHP=4;NT=ref;QSI=28;QSI_NT=28;RC=2;RU=CA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 44:44:44,44:0,0:0,0:45.52:0.29:0.00 25:25:18,18:5,5:2,2:28.35:0.00:0.00 10 + CCDS46405.1xxxMYO7B CCTGCCCACAA 2 131131329 . T TA . PASS IC=2;IHP=2;NT=ref;QSI=61;QSI_NT=61;RC=1;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 37:37:35,35:0,0:1,1:38.11:0.00:0.00 40:40:19,19:16,16:3,3:40.17:0.00:0.00 + AGAGATACAGT 2 132780738 . C CTAGT . PASS IC=1;IHP=2;NT=ref;QSI=23;QSI_NT=23;RC=0;RU=TAGT;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 46:46:45,46:0,0:1,1:48.03:0.00:0.00 39:39:30,33:5,5:3,3:35.91:0.00:0.00 + ACTAACTAGAA 2 135103489 . G GT . PASS IC=5;IHP=7;NT=ref;QSI=66;QSI_NT=66;RC=4;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 37:37:36,36:0,0:1,1:35.41:0.00:0.00 35:35:16,16:16,16:3,3:39.14:0.00:0.00 10 + CCDS2171.1xxxMGAT5 ACTGGGTTTTA 2 140306935 . AT A . PASS IC=0;IHP=2;NT=ref;QSI=80;QSI_NT=79;RC=1;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 36:36:36,36:0,0:0,0:38.15:0.00:0.00 32:32:12,12:16,19:5,3:36.35:0.00:0.00 + TGCTAATCAAG 2 143319864 . GC G . PASS IC=1;IHP=2;NT=ref;QSI=60;QSI_NT=60;RC=2;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 38:38:38,38:0,0:0,0:39.09:0.00:0.00 35:35:17,17:14,14:2,2:38.57:0.00:0.00 + TTCCTGCCTTC 2 144649928 . AC A . PASS IC=2;IHP=6;NT=ref;QSI=38;QSI_NT=38;RC=3;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:32,32:0,0:0,0:31.51:0.00:0.00 26:26:14,14:8,8:3,3:28:0.00:0.00 + AGTTCACCCGC 2 149315384 . TC T . PASS IC=0;IHP=4;NT=ref;QSI=100;QSI_NT=86;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 36:36:37,37:0,0:0,0:36.94:0.14:0.00 27:27:5,5:18,18:4,4:29.1:0.00:0.00 + TCCATTCTTGG 2 160781266 . T TA . PASS IC=8;IHP=13;NT=ref;QSI=76;QSI_NT=76;RC=7;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 37:37:37,37:0,0:0,0:32.35:1.05:0.00 33:33:13,13:16,17:4,3:30.34:0.27:0.00 + AAAAATAAAAA 2 162680916 . CTG C . PASS IC=1;IHP=4;NT=ref;QSI=98;QSI_NT=85;RC=2;RU=TG;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:35,35:0,0:1,1:33.61:0.14:0.00 33:33:7,7:22,22:4,4:32.9:0.00:0.00 10 + CCDS46438.1xxxSLC4A10 GAAAACTGTGT 2 178961950 . C CA . PASS IC=1;IHP=4;NT=ref;QSI=68;QSI_NT=68;RC=0;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 42:42:42,42:0,0:0,0:40.42:0.00:0.00 26:26:11,11:9,12:5,2:28.79:0.00:0.00 10 - CCDS42785.1xxxPDE11A GTTTGGGGCAC 2 184345711 . CA C . PASS IC=1;IHP=2;NT=ref;QSI=94;QSI_NT=85;RC=2;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 38:38:37,37:0,0:0,0:37.22:0.00:0.00 27:27:7,7:17,18:2,1:30.17:0.00:0.00 + AAAAGCAATGG 2 215239837 . AGG A . PASS IC=0;IHP=2;NT=ref;QSI=50;QSI_NT=50;RC=2;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 38:38:38,38:0,0:0,0:38.54:0.01:0.00 36:36:20,20:12,12:2,2:35.22:0.00:0.00 10 + CCDS2396.1xxxSPAG16 CAGGCAGGTAC 2 232577819 . ATTTG A . PASS IC=1;IHP=6;NT=ref;QSI=38;QSI_NT=38;RC=2;RU=TTTG;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 29:29:28,28:0,0:1,1:27.94:0.03:0.00 36:36:18,22:12,12:6,5:36.07:0.00:0.00 + AGGAAATTTGT 2 237243390 . TGG T . PASS IC=1;IHP=4;NT=ref;QSI=39;QSI_NT=39;RC=3;RU=G;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 31:31:31,31:0,0:0,0:29.53:0.50:0.00 27:27:15,16:9,9:2,2:28.29:0.00:0.00 10 - CCDS46549.1xxxIQCA1 GCTCACCCACA 3 2180535 . TTC T . PASS IC=7;IHP=6;NT=ref;QSI=22;QSI_NT=22;RC=8;RU=TC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 30:30:26,26:0,0:3,3:31.59:0.48:0.00 28:28:15,15:5,5:8,8:30.69:0.00:0.00 + TTTTCTTCTCT 3 3436346 . TAGCTCC T . PASS IC=0;IHP=4;NT=ref;QSI=67;QSI_NT=67;RC=1;RU=AGCTCC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 39:39:40,40:0,0:0,0:37.29:0.00:0.00 48:48:23,23:18,18:6,6:42.56:0.00:0.00 + ATGTTTAGCTC 3 6504949 . T TGCCTCAGGA . PASS IC=2;IHP=2;NT=ref;QSI=39;QSI_NT=39;RC=1;RU=GCCTCAGGA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:25,25:0,0:3,3:28.78:0.00:0.00 49:49:21,21:14,14:13,13:42.07:0.00:0.00 + ACCACTGCCTC 3 12870913 . TG T . PASS IC=2;IHP=3;NT=ref;QSI=91;QSI_NT=85;RC=3;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 37:37:37,38:0,0:0,0:38.54:0.00:0.00 33:33:8,9:18,18:7,7:31.54:0.00:0.00 10 + CCDS43053.1xxxCAND2 AGTGTTGGGAT 3 20708486 . C CA . PASS IC=5;IHP=4;NT=ref;QSI=48;QSI_NT=48;RC=4;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 27:27:27,27:0,0:0,0:29.75:0.00:0.00 51:51:27,27:20,20:4,4:46.29:0.00:0.00 + ACCTTCAAAAT 3 21670483 . AT A . PASS IC=5;IHP=6;NT=ref;QSI=75;QSI_NT=75;RC=6;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 46:46:42,43:0,0:4,3:45.73:1.51:0.00 30:30:12,12:14,14:4,4:30.39:0.00:0.00 10 - CCDS2636.1xxxZNF385D TAAAAAATTGT 3 27975181 . TA T . PASS IC=7;IHP=8;NT=ref;QSI=49;QSI_NT=49;RC=8;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 27:27:26,27:0,0:1,1:30.81:0.00:0.00 35:35:14,15:15,15:6,6:34.28:0.00:0.00 + TGAGCTAAAAA 3 33291746 . C CT . PASS IC=9;IHP=10;NT=ref;QSI=76;QSI_NT=76;RC=8;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 45:45:40,40:0,0:4,4:45.32:0.00:0.00 29:29:9,9:13,13:7,7:32.74:0.00:0.00 + TCATTCTTTTT 3 35564164 . TC T . PASS IC=1;IHP=4;NT=ref;QSI=58;QSI_NT=58;RC=2;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 31:31:31,31:0,0:0,0:30.92:0.00:0.00 33:33:17,17:16,17:0,0:36.74:0.00:0.00 + CCTTTTCCTGC 3 59826047 . TG T . PASS IC=1;IHP=2;NT=ref;QSI=53;QSI_NT=53;RC=2;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 25:25:26,26:0,0:0,0:24.62:0.50:0.00 31:31:12,12:17,17:2,2:29.43:0.00:0.00 10 - CCDS2894.1xxxFHIT GTTTGCCATCC 3 63948059 . TTTATTAAA T . PASS IC=0;IHP=5;NT=ref;QSI=38;QSI_NT=38;RC=1;RU=TTATTAAA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:34,34:0,0:0,0:33.46:0.89:0.00 30:30:16,16:8,8:3,3:33.22:0.00:0.00 10 + CCDS43102.1xxxATXN7 ATATATTTATT 3 69952476 . CTAGTT C . PASS IC=0;IHP=3;NT=ref;QSI=46;QSI_NT=46;RC=1;RU=TAGTT;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:33,33:0,0:0,0:33.32:0.00:0.00 30:30:17,17:11,11:2,2:29.1:0.00:0.00 10 + CCDS2913.1xxxMITF ACAGCCTAGTT 3 74507555 . GA G . PASS IC=7;IHP=8;NT=ref;QSI=43;QSI_NT=43;RC=8;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:33,33:0,0:2,2:34.33:0.25:0.00 36:36:21,21:12,13:3,3:34.73:0.00:0.00 10 - CCDS33790.1xxxCNTN3 TTTTTTTCCAG 3 102829411 . T TA . PASS IC=9;IHP=8;NT=ref;QSI=65;QSI_NT=65;RC=8;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 39:39:37,37:0,0:2,2:36.44:0.36:0.00 37:37:19,19:17,17:1,1:40.81:0.00:0.00 + TAAATTAAAAA 3 109843697 . G GT . PASS IC=5;IHP=6;NT=ref;QSI=40;QSI_NT=40;RC=4;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 36:36:32,32:0,0:3,3:37.41:0.03:0.00 28:28:15,15:9,9:2,2:31.43:0.00:0.00 + GTATTGTTTTA 3 129917602 . CT C . PASS IC=6;IHP=7;NT=ref;QSI=21;QSI_NT=21;RC=7;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 36:36:31,31:0,0:4,4:32.98:1.00:0.00 40:40:29,30:7,10:4,4:38.13:0.00:0.00 + ATCTACTTTTT 3 130606766 . GC G . PASS IC=0;IHP=2;NT=ref;QSI=60;QSI_NT=60;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 34:34:34,34:0,0:0,0:33.04:0.00:0.00 38:38:18,18:16,16:4,4:35.83:0.00:0.00 10 + CCDS46914.1xxxATP2C1 CCACAGCTGGC 3 141171125 . CAGACCT C . PASS IC=1;IHP=4;NT=ref;QSI=24;QSI_NT=24;RC=2;RU=AGACCT;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 34:34:35,35:0,0:0,0:35.01:0.00:0.00 31:31:24,24:6,6:6,6:32.27:0.00:0.00 + GTTTTCAGACC 3 152229353 . TG T . PASS IC=0;IHP=3;NT=ref;QSI=67;QSI_NT=67;RC=1;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 40:40:40,40:0,0:0,0:39.9:0.00:0.00 42:42:17,18:16,16:8,7:42.92:0.00:0.00 + ATGACTGAGGT 3 175723575 . AAG A . PASS IC=0;IHP=2;NT=ref;QSI=51;QSI_NT=51;RC=1;RU=AG;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:28,28:0,0:0,0:29.49:0.48:0.00 32:32:15,15:14,14:3,3:34:0.00:0.00 + TCAGCAAGCCT 3 180985878 . CA C . PASS IC=1;IHP=4;NT=ref;QSI=59;QSI_NT=59;RC=2;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 31:31:31,31:0,0:0,0:33.89:0.39:0.00 33:33:16,16:16,16:1,1:36.42:0.00:0.00 + CTTTTCAAGCT 3 183009500 . AT A . PASS IC=0;IHP=2;NT=ref;QSI=58;QSI_NT=58;RC=1;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 30:30:30,30:0,0:0,0:29.73:0.00:0.00 43:43:22,22:20,20:1,1:42.82:0.00:0.00 10 - CCDS3243.1xxxMCF2L2 GTAAGTATCTA 3 190317893 . GATTAA G . PASS IC=0;IHP=4;NT=ref;QSI=50;QSI_NT=50;RC=1;RU=ATTAA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 47:47:49,49:0,0:0,0:47.49:0.90:0.00 30:30:17,17:9,9:2,2:27.91:0.00:0.00 10 + CCDS46982.1xxxIL1RAP GAAGTGATTAA 4 4190507 . C CTTGTTAGTCA . PASS IC=1;IHP=3;NT=ref;QSI=52;QSI_NT=52;RC=0;RU=TTGTTAGTCA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 26:26:26,26:0,0:0,0:26.23:0.00:0.00 39:39:18,18:19,26:2,2:48.78:0.00:0.00 + TCACTCCTAGG 4 4190511 . G GTTA . PASS IC=1;IHP=2;NT=ref;QSI=49;QSI_NT=49;RC=0;RU=TTA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 25:25:25,25:0,0:0,0:26.65:0.00:0.00 38:38:17,17:19,26:2,2:49.91:0.00:0.00 + TCCTAGGTCTC 4 37943973 . C CT . PASS IC=9;IHP=12;NT=ref;QSI=65;QSI_NT=65;RC=8;RU=T;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 29:29:28,28:0,0:1,1:29.36:0.00:0.00 26:26:7,8:17,17:2,2:25.74:0.00:0.00 10 + CCDS54755.1xxxPTTG2 CCTGCCTTTTT 4 49118400 . G GT . PASS IC=3;IHP=5;NT=ref;QSI=26;QSI_NT=26;RC=2;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 42:42:40,43:0,0:2,1:45.23:1.27:0.00 26:26:18,27:4,10:4,3:28.7:0.64:0.00 + ACTTGGTTGTT 4 49168217 . GT G . PASS IC=2;IHP=4;NT=ref;QSI=34;QSI_NT=34;RC=3;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 75:75:76,93:0,0:1,1:71.3:1.95:0.00 82:82:62,76:8,10:12,13:77.08:0.32:0.00 + TTTGGGTTTCT 4 49521844 . TC T . PASS IC=0;IHP=3;NT=ref;QSI=22;QSI_NT=22;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 40:40:40,42:0,0:2,2:40.4:0.83:0.00 45:45:36,40:7,9:2,1:39.67:0.13:0.00 + GCCTTTCGCCG 4 53621042 . AT A . PASS IC=3;IHP=4;NT=ref;QSI=49;QSI_NT=49;RC=4;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:26,26:0,0:3,3:26.55:0.16:0.00 43:43:19,19:18,18:6,7:37.88:0.00:0.00 + TCTTCATTTTG 4 68614429 . TATA T . PASS IC=4;IHP=4;NT=ref;QSI=20;QSI_NT=20;RC=5;RU=ATA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:32,32:0,0:2,2:34.3:1.47:0.00 29:29:18,18:4,4:7,7:33.25:0.00:0.00 10 - CCDS3517.1xxxGNRHR TATTATTATAC 4 89256374 . TA T . PASS IC=0;IHP=6;NT=ref;QSI=42;QSI_NT=42;RC=1;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 31:31:33,33:0,0:0,0:31.96:0.12:0.00 33:33:17,17:10,10:2,2:30.69:0.00:0.00 + ACGTTTATTTG 4 90994342 . CA C . PASS IC=2;IHP=11;NT=ref;QSI=70;QSI_NT=70;RC=3;RU=A;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 45:45:44,44:0,0:0,0:42.52:0.00:0.00 43:43:22,23:18,18:3,3:37.87:0.00:0.00 + AAAAACAAATT 4 121891666 . TC T . PASS IC=0;IHP=3;NT=ref;QSI=93;QSI_NT=85;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 37:37:37,37:0,0:0,0:33.03:0.00:0.00 33:33:8,8:19,19:5,5:36.46:0.00:0.00 + CACAATCTTCG 4 132035434 . TA T . PASS IC=1;IHP=2;NT=ref;QSI=35;QSI_NT=35;RC=2;RU=A;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 31:31:31,31:0,0:0,0:30.58:0.00:0.00 44:44:27,28:12,12:5,5:43.36:0.00:0.00 + TCCTGTAATGA 4 133413343 . ACCTT A . PASS IC=0;IHP=6;NT=ref;QSI=48;QSI_NT=48;RC=1;RU=CCTT;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 30:30:32,32:0,0:0,0:30.34:0.00:0.00 25:25:14,15:11,11:0,0:25.58:0.00:0.00 + GCCCCACCTTA 4 156650952 . AT A . PASS IC=5;IHP=6;NT=ref;QSI=59;QSI_NT=59;RC=6;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:31,31:0,0:2,2:29.41:0.00:0.00 29:29:13,13:14,14:2,2:25.36:0.00:0.00 10 + CCDS34085.1xxxGUCY1A3 TTATAATTTTT 4 160342640 . GCTTCA G . PASS IC=0;IHP=3;NT=ref;QSI=23;QSI_NT=23;RC=1;RU=CTTCA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 34:34:33,33:0,0:1,1:34.72:0.78:0.00 28:28:19,19:5,5:4,4:28.77:0.00:0.00 + CTGCAGCTTCA 4 178815034 . AT A . PASS IC=2;IHP=3;NT=ref;QSI=42;QSI_NT=42;RC=3;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:32,32:0,0:0,0:32.4:0.02:0.00 39:39:24,24:13,13:3,3:37.05:0.00:0.00 + CTGTAATTTGG 4 178937145 . T TC . PASS IC=2;IHP=3;NT=ref;QSI=26;QSI_NT=26;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:33,33:0,0:0,0:31.96:0.00:0.00 33:33:18,23:6,7:8,8:33.03:0.00:0.00 + GCGCCTCTCCT 4 180507308 . ATCTC A . PASS IC=2;IHP=2;NT=ref;QSI=20;QSI_NT=20;RC=4;RU=TC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:25,25:0,0:3,3:26.79:0.22:0.00 27:27:17,18:5,6:7,6:26.22:0.00:0.00 + ACTTGATCTCT 4 182567045 . GT G . PASS IC=5;IHP=7;NT=ref;QSI=62;QSI_NT=62;RC=6;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:27,27:0,0:2,2:29:0.22:0.00 39:39:10,10:20,20:8,8:38.39:0.00:0.00 + ACATCGTTTTT 4 182772028 . G GT . PASS IC=5;IHP=5;NT=ref;QSI=64;QSI_NT=64;RC=4;RU=T;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:32,32:0,0:2,2:35.37:0.00:0.00 33:33:13,14:16,16:4,4:34.92:0.00:0.00 + TTCCGGTTTTC 4 188671335 . AC A . PASS IC=3;IHP=7;NT=ref;QSI=55;QSI_NT=55;RC=4;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:28,28:0,0:0,0:27.03:0.00:0.00 42:42:18,18:19,19:4,4:37.18:0.00:0.00 + TGCCCACCCCA 5 1644040 . CA C . PASS IC=0;IHP=1;NT=ref;QSI=51;QSI_NT=51;RC=1;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 31:31:31,31:0,0:0,0:32.68:0.16:0.00 32:32:16,16:13,13:2,2:29.08:0.00:0.00 + GCTGTCAGCAT 5 5173828 . TG T . PASS IC=0;IHP=2;NT=ref;QSI=62;QSI_NT=62;RC=1;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 37:37:37,37:0,0:1,1:38.94:0.00:0.00 38:38:20,20:16,17:3,2:36.63:0.00:0.00 10 + CCDS43299.1xxxADAMTS16 TGATCTGCCTG 5 5428003 . G GT . PASS IC=2;IHP=2;NT=ref;QSI=53;QSI_NT=53;RC=1;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:33,33:0,0:0,0:31.23:0.73:0.00 29:29:14,14:12,12:2,2:31.29:0.00:0.00 10 + CCDS47187.1xxxKIAA0947 TTATGGTAAGG 5 16520425 . GGTTTTT G . PASS IC=0;IHP=12;NT=ref;QSI=24;QSI_NT=24;RC=1;RU=GTTTTT;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 30:30:28,28:0,0:1,1:29.89:0.25:0.00 31:31:22,23:7,7:2,1:26.56:0.21:0.00 10 - CCDS43304.1xxxFAM134B CAAAAAAAAAA 5 27743912 . GGCACCCAGTCCCATCGAC G . PASS IC=0;IHP=5;NT=ref;QSI=38;QSI_NT=38;RC=1;RU=GCACCCAGTCCCATCGAC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 46:46:51,51:0,0:0,0:41.66:0.16:0.00 28:28:21,21:7,7:2,2:28.92:0.00:0.00 + CTCCAGGCACC 5 35406722 . AG A . PASS IC=3;IHP=4;NT=ref;QSI=51;QSI_NT=51;RC=4;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 34:34:34,34:0,0:0,0:34.19:0.02:0.00 29:29:16,16:12,12:0,0:27.38:0.00:0.00 + GTTACAGGGGA 5 42802644 . AC A . PASS IC=0;IHP=2;NT=ref;QSI=48;QSI_NT=48;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 43:43:43,43:0,0:0,0:39.33:0.01:0.00 39:39:22,22:11,11:6,8:41.16:0.00:0.00 10 - CCDS43311.1xxxSEPP1 TACACAGTATA 5 83969121 . TC T . PASS IC=1;IHP=4;NT=ref;QSI=65;QSI_NT=65;RC=2;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 36:36:35,35:0,0:1,1:34.25:0.18:0.00 30:30:14,14:15,15:1,1:32.71:0.00:0.00 + CAGCCTCCGAA 5 85131234 . AAG A . PASS IC=0;IHP=4;NT=ref;QSI=52;QSI_NT=52;RC=1;RU=AG;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 25:25:25,25:0,0:0,0:28.41:0.01:0.00 25:25:8,9:14,15:5,4:28.19:0.00:0.00 + GGAAGAAGGTG 5 86960681 . C CA . PASS IC=9;IHP=10;NT=ref;QSI=63;QSI_NT=63;RC=8;RU=A;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 42:42:41,41:0,0:1,1:41.63:0.74:0.00 27:27:12,13:11,12:4,3:30.09:0.00:0.00 + GTGAACAAAAA 5 89043496 . AT A . PASS IC=3;IHP=10;NT=ref;QSI=41;QSI_NT=41;RC=4;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 25:25:24,24:0,0:1,1:23.89:0.00:0.00 28:28:12,12:11,11:5,5:27.83:0.00:0.00 + AAAAAATTTTC 5 103757953 . A AT . PASS IC=4;IHP=3;NT=ref;QSI=72;QSI_NT=72;RC=3;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:34,34:0,0:1,1:36.37:0.09:0.00 34:34:10,10:15,15:8,8:34.43:0.00:0.00 + ATGGAATTTAG 5 123323930 . C CA . PASS IC=2;IHP=6;NT=ref;QSI=58;QSI_NT=58;RC=1;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 68:68:67,67:0,0:1,1:61.16:0.38:0.00 56:56:37,37:14,14:5,5:54.44:0.00:0.00 + GTGGCCACCCC 5 125678206 . AATAGGTTTCTTG A . PASS IC=0;IHP=3;NT=ref;QSI=61;QSI_NT=61;RC=1;RU=ATAGGTTTCTTG;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 61:61:65,65:0,0:0,0:59.3:0.00:0.00 68:68:49,49:17,17:5,5:66.77:0.00:0.00 + ATCAGAATAGG 5 127563373 . G GT . PASS IC=2;IHP=3;NT=ref;QSI=58;QSI_NT=58;RC=1;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 44:44:44,44:0,0:0,0:45.69:0.04:0.00 59:59:34,34:18,19:7,6:58.64:0.00:0.00 + TAGTTGTAAGT 5 132301731 . TC T . PASS IC=0;IHP=3;NT=ref;QSI=41;QSI_NT=41;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:32,33:0,0:0,0:31.45:0.10:0.00 47:47:30,30:15,15:5,5:51.71:0.00:0.00 + TGACCTCGTGA 5 139751805 . G GT . PASS IC=1;IHP=3;NT=ref;QSI=56;QSI_NT=56;RC=0;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 52:52:52,52:0,0:0,0:52.26:0.34:0.00 51:51:30,30:14,14:6,6:48.92:0.00:0.00 10 + CCDS47278.1xxxSLC4A9 GCCTGGGCCAT 5 151279806 . GTGAGCA G . PASS IC=0;IHP=3;NT=ref;QSI=20;QSI_NT=20;RC=1;RU=TGAGCA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 46:46:47,47:0,0:0,0:44.5:0.02:0.00 47:47:41,41:4,4:7,7:50.94:0.00:0.00 10 - CCDS4320.1xxxGLRA1 ATGAGGTGCTC 5 157953691 . A AT . PASS IC=9;IHP=8;NT=ref;QSI=50;QSI_NT=50;RC=8;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 37:37:37,37:0,0:0,0:39.54:0.00:0.00 53:53:28,28:16,17:7,7:54.73:0.00:0.00 + TTATGATTTTT 5 159439971 . G GT . PASS IC=7;IHP=6;NT=ref;QSI=68;QSI_NT=68;RC=6;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 54:54:53,53:0,0:1,1:52.15:0.02:0.00 61:61:36,36:20,20:4,4:65.79:0.00:0.00 10 + CCDS4348.1xxxTTC1 AGGTGGTTTTT 5 159489691 . G GA . PASS IC=2;IHP=3;NT=ref;QSI=50;QSI_NT=50;RC=1;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 47:47:47,47:0,0:0,0:44.58:0.29:0.00 62:62:36,36:15,15:7,7:59.53:0.00:0.00 10 + CCDS4348.1xxxTTC1 CCATGGAGCTG 5 162333820 . ACATATATG A . PASS IC=0;IHP=2;NT=ref;QSI=33;QSI_NT=33;RC=1;RU=CATATATG;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 67:67:64,71:0,0:1,1:59.96:1.42:0.00 51:51:37,54:7,8:10,6:40.39:1.26:0.00 + CACATACATAT 5 165741112 . T TA . PASS IC=2;IHP=8;NT=ref;QSI=36;QSI_NT=36;RC=1;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 41:41:41,41:0,0:0,0:45.1:0.00:0.00 57:57:36,37:12,12:9,8:56.46:0.00:0.00 + TTTTTTACAAA 5 165823072 . CG C . PASS IC=0;IHP=3;NT=ref;QSI=35;QSI_NT=35;RC=1;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 38:38:38,39:0,0:0,0:38.93:0.03:0.00 48:48:32,32:11,11:3,3:44.09:0.00:0.00 + AGACACGTTTA 5 165970381 . AT A . PASS IC=7;IHP=9;NT=ref;QSI=44;QSI_NT=44;RC=8;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 43:43:42,42:0,0:2,2:41.74:0.00:0.00 55:55:35,35:14,14:5,5:63.2:0.00:0.00 + TCAGAATTTTT 5 174112425 . T TAAA . PASS IC=8;IHP=14;NT=ref;QSI=23;QSI_NT=23;RC=5;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:31,31:0,0:2,2:35.02:1.76:0.00 33:33:25,25:7,7:4,4:37.33:0.71:0.00 + TTTTTTAAAAA 5 175669057 . GA G . PASS IC=6;IHP=7;NT=ref;QSI=28;QSI_NT=28;RC=7;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 44:44:40,41:0,0:3,3:38.17:0.00:0.00 66:66:50,50:12,15:4,4:64.35:0.00:0.00 10 + CCDS4398.2xxxSIMC1 ATGTGGAAAAA 5 176967564 . GCTTGCTCA G . PASS IC=0;IHP=3;NT=ref;QSI=27;QSI_NT=27;RC=1;RU=CTTGCTCA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 56:56:59,60:0,0:0,0:54.52:0.05:0.00 43:43:38,38:5,5:1,1:43.12:0.51:0.00 10 - CCDS54954.1xxxFAM193B CAGGAGTGAGC 5 179416660 . AT A . PASS IC=2;IHP=3;NT=ref;QSI=26;QSI_NT=26;RC=3;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 49:49:49,49:0,0:1,1:44.65:0.34:0.00 35:35:25,26:4,5:5,4:42.47:0.00:0.00 10 - CCDS4451.1xxxRNF130 TTTTAAATGAC 6 11109994 . G GT . PASS IC=4;IHP=3;NT=ref;QSI=72;QSI_NT=71;RC=3;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 44:44:43,43:0,0:0,0:40.55:0.00:0.00 46:46:21,21:18,18:8,8:48.8:0.00:0.00 10 + CCDS56396.1xxxSMIM13 TTAGGGTTTGG 6 13388513 . AC A . PASS IC=1;IHP=6;NT=ref;QSI=21;QSI_NT=21;RC=2;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:37,37:0,0:0,0:36.25:0.13:0.00 39:39:31,33:6,7:3,3:39.73:0.00:0.00 10 - CCDS4524.1xxxGFOD1 TTTTTGGTTCC 6 14213027 . C CAA . PASS IC=2;IHP=7;NT=ref;QSI=56;QSI_NT=56;RC=0;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 34:34:33,34:0,0:1,0:36.6:0.43:0.00 48:48:22,22:17,17:7,7:37.68:0.00:0.00 + CACATCCCCCC 6 18750069 . C CA . PASS IC=4;IHP=3;NT=ref;QSI=48;QSI_NT=48;RC=3;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 25:25:24,24:0,0:1,1:26.54:0.00:0.00 28:28:10,10:15,15:3,3:28.59:0.00:0.00 + AGACTCAAACT 6 23851728 . GA G . PASS IC=1;IHP=2;NT=ref;QSI=72;QSI_NT=71;RC=2;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:33,33:0,0:0,0:35.31:0.01:0.00 34:34:14,14:19,19:1,1:32.82:0.00:0.00 + TTCTGGAATTC 6 51435437 . G GA . PASS IC=2;IHP=5;NT=ref;QSI=84;QSI_NT=83;RC=1;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 50:50:49,49:0,0:1,1:48.04:0.00:0.00 27:27:11,11:14,14:2,2:27.13:0.00:0.00 + CAGAAGACCCC 6 53970799 . TG T . PASS IC=0;IHP=1;NT=ref;QSI=94;QSI_NT=88;RC=1;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 43:43:43,43:0,0:0,0:43.54:0.01:0.00 27:27:7,7:15,15:3,3:29.37:0.00:0.00 10 + CCDS64448.1xxxMLIP CTTGCTGCTAT 6 54018004 . TG T . PASS IC=1;IHP=9;NT=ref;QSI=63;QSI_NT=63;RC=2;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 40:40:40,40:0,0:2,2:41.07:0.00:0.00 34:34:17,17:14,14:4,4:39.99:0.00:0.00 10 + CCDS64448.1xxxMLIP TTTTTTGGTGC 6 58194429 . TAA T . PASS IC=0;IHP=3;NT=ref;QSI=23;QSI_NT=23;RC=2;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 40:40:41,41:0,0:0,0:40.53:0.00:0.00 33:33:25,25:5,7:4,4:30.69:0.00:0.00 + ATATATAAGTG 6 66952954 . ACC A . PASS IC=0;IHP=3;NT=ref;QSI=43;QSI_NT=43;RC=2;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:34,35:0,0:0,0:32.21:0.01:0.00 42:42:23,23:12,12:3,3:36.5:0.00:0.00 + CTCCTACCTCA 6 72331631 . G GT . PASS IC=2;IHP=3;NT=ref;QSI=71;QSI_NT=71;RC=1;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:35,35:0,0:0,0:34.9:0.14:0.00 33:33:11,11:15,15:7,7:31.44:0.00:0.00 + AGCAGGTGTGA 6 76022006 . G GT . PASS IC=2;IHP=2;NT=ref;QSI=54;QSI_NT=54;RC=1;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 31:31:30,31:0,0:0,0:30.06:0.01:0.00 29:29:10,10:11,11:8,8:32.27:0.00:0.00 10 - CCDS4984.1xxxFILIP1 ATGCTACCTGA 6 79524898 . A AT . PASS IC=1;IHP=5;NT=ref;QSI=44;QSI_NT=44;RC=0;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:33,33:0,0:0,0:34.37:0.00:0.00 42:42:23,23:12,14:3,2:41.7:0.00:0.00 + CGGCAAAATAC 6 97211954 . AG A . PASS IC=0;IHP=3;NT=ref;QSI=82;QSI_NT=80;RC=1;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 36:36:36,36:0,0:0,0:32.03:0.00:0.00 48:48:18,18:25,25:4,5:48.9:0.00:0.00 + TTTAAAGTCTC 6 104173271 . A AT . PASS IC=3;IHP=3;NT=ref;QSI=49;QSI_NT=49;RC=2;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 30:30:29,29:0,0:1,1:31.28:0.01:0.00 47:47:23,23:17,17:6,6:43.56:0.00:0.00 + CCATAATTGCA 6 115610240 . GT G . PASS IC=3;IHP=7;NT=ref;QSI=43;QSI_NT=43;RC=4;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:32,32:0,0:0,0:29.56:0.01:0.00 35:35:16,16:10,10:8,8:38.94:0.00:0.00 + TATTTGTTTTA 6 123185211 . AT A . PASS IC=6;IHP=8;NT=ref;QSI=86;QSI_NT=83;RC=7;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 40:40:37,38:0,0:4,4:36.73:0.00:0.00 40:40:12,12:19,20:8,8:36.34:0.00:0.00 + GGCTAATTTTT 6 133961949 . ATG A . PASS IC=6;IHP=2;NT=ref;QSI=20;QSI_NT=20;RC=7;RU=TG;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 39:39:36,36:0,0:3,3:36.07:0.65:0.00 34:34:20,21:4,4:10,9:31.36:0.00:0.00 + TGTGTATGTGT 6 163455085 . TC T . PASS IC=0;IHP=2;NT=ref;QSI=22;QSI_NT=22;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 47:47:47,47:0,0:0,0:48.7:0.01:0.00 48:48:36,37:5,9:6,6:46.39:0.10:0.00 10 + CCDS43524.1xxxPACRG ACCATTCATTC 7 1640117 . A AT . PASS IC=1;IHP=5;NT=ref;QSI=41;QSI_NT=41;RC=0;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 27:27:27,27:0,0:0,0:27:0.01:0.00 35:35:20,20:13,13:2,2:40.09:0.00:0.00 + TTTTTAGACAG 7 7661679 . C CAT . PASS IC=6;IHP=2;NT=ref;QSI=48;QSI_NT=48;RC=5;RU=AT;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:33,34:0,0:2,2:35.04:0.36:0.00 36:36:15,15:11,11:10,12:32.39:0.00:0.00 + TGTTGCATATA 7 10910264 . AC A . PASS IC=0;IHP=4;NT=ref;QSI=45;QSI_NT=45;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:32,32:0,0:0,0:32.12:0.06:0.00 25:25:14,14:10,10:1,1:23.48:0.00:0.00 + AGGATACAAAT 7 18385427 . AT A . PASS IC=7;IHP=8;NT=ref;QSI=43;QSI_NT=43;RC=8;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 29:29:28,28:0,0:0,0:27.17:0.00:0.00 33:33:19,19:13,14:1,1:32.64:0.00:0.00 10 + CCDS47557.1xxxHDAC9 TCAGCATTTTT 7 37585231 . T TA . PASS IC=1;IHP=4;NT=ref;QSI=99;QSI_NT=87;RC=0;RU=A;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 40:40:40,40:0,0:0,0:39.88:0.22:0.00 42:42:13,14:25,25:3,3:41.49:0.00:0.00 + AATCCTCCAGG 7 41783558 . TC T . PASS IC=0;IHP=4;NT=ref;QSI=73;QSI_NT=73;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 52:52:51,51:0,0:0,0:47.89:0.01:0.00 33:33:17,17:13,14:3,2:32.72:0.00:0.00 + GCCTTTCACCC 7 42641845 . CA C . PASS IC=3;IHP=4;NT=ref;QSI=20;QSI_NT=20;RC=4;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 31:31:29,29:1,1:1,1:33.22:0.01:0.00 34:34:13,13:16,16:5,5:37.43:0.00:0.00 + TCACGCAAAAT 7 43188799 . AC A . PASS IC=4;IHP=5;NT=ref;QSI=41;QSI_NT=41;RC=5;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 42:42:40,40:0,0:2,2:40.37:0.02:0.00 34:34:19,19:9,10:6,6:34.85:0.00:0.00 + CAGCGACCCCC 7 48220026 . G GT . PASS IC=9;IHP=12;NT=ref;QSI=42;QSI_NT=42;RC=8;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 40:40:36,37:0,0:4,4:36.61:0.00:0.00 26:26:13,13:8,8:6,6:31.11:0.00:0.00 10 + CCDS47584.1xxxABCA13 CTTTTGTTTTT 7 49781851 . A AAAAG . PASS IC=1;IHP=2;NT=ref;QSI=77;QSI_NT=76;RC=0;RU=AAAG;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 41:41:41,41:0,0:0,0:42.54:0.00:0.00 37:37:15,15:16,16:1,1:39.64:0.00:0.00 + ATCATATCATT 7 51624100 . T TG . PASS IC=3;IHP=3;NT=ref;QSI=80;QSI_NT=78;RC=2;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 34:34:33,33:0,0:0,0:28.85:0.00:0.00 39:39:12,12:23,23:0,0:35.13:0.00:0.00 + TAGTTTGGCTG 7 52192099 . GC G . PASS IC=0;IHP=2;NT=ref;QSI=89;QSI_NT=88;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 58:58:56,56:0,0:0,0:52:0.31:0.00 45:45:21,21:19,19:3,3:42.9:0.00:0.00 + TTCTAGCTAAG 7 55074381 . GT G . PASS IC=1;IHP=2;NT=ref;QSI=68;QSI_NT=68;RC=2;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 47:47:47,47:0,0:0,0:45.59:0.01:0.00 27:27:11,11:11,11:4,4:30.91:0.00:0.00 + GCCTGGTTCAG 7 62711298 . C CA . PASS IC=5;IHP=7;NT=ref;QSI=25;QSI_NT=25;RC=4;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:32,34:0,0:0,0:37.91:0.25:0.00 29:29:19,19:6,7:4,4:31.06:0.00:0.00 + CGTCTCAAAAC 7 65256142 . CTCTCACA C . PASS IC=0;IHP=2;NT=ref;QSI=55;QSI_NT=55;RC=1;RU=TCTCACA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 34:34:35,35:0,0:0,0:32.88:0.00:0.00 32:32:17,17:13,14:2,2:31.88:0.00:0.00 + TTCAGCTCTCA 7 67988413 . A ACAATATAAAGACACAGAGGGAAGG . PASS IC=1;IHP=3;NT=ref;QSI=34;QSI_NT=34;RC=0;RU=CAATATAAAGACACAGAGGGAAGG;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 25:25:18,18:0,0:7,7:23.17:0.00:0.00 26:26:6,6:9,10:16,16:27.19:0.00:0.00 + GGAAGACAATA 7 79702052 . GA G . PASS IC=4;IHP=6;NT=ref;QSI=77;QSI_NT=76;RC=5;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:33,33:0,0:1,1:36.58:0.00:0.00 27:27:9,9:17,17:1,1:27.91:0.00:0.00 + ACATAGAAAAA 7 81916743 . TA T . PASS IC=0;IHP=3;NT=ref;QSI=72;QSI_NT=72;RC=1;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 36:36:36,36:0,0:0,0:36.08:0.00:0.00 39:39:16,16:18,18:4,4:35.75:0.00:0.00 10 - CCDS5598.1xxxCACNA2D1 ATATAATAGAA 7 82992449 . CA C . PASS IC=7;IHP=9;NT=ref;QSI=78;QSI_NT=78;RC=8;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 45:45:44,44:0,0:2,2:42.31:0.00:0.00 40:40:18,18:18,18:4,4:38.75:0.00:0.00 + AAATCCAAAAA 7 86102196 . AT A . PASS IC=2;IHP=4;NT=ref;QSI=62;QSI_NT=62;RC=3;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 37:37:37,37:0,0:0,0:39.71:0.01:0.00 39:39:19,19:16,16:4,4:34.67:0.00:0.00 + TATATATTTGT 7 87836763 . TA T . PASS IC=0;IHP=5;NT=ref;QSI=40;QSI_NT=40;RC=1;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 34:34:34,34:0,0:0,0:34.84:0.03:0.00 33:33:20,20:10,10:1,2:31.01:0.00:0.00 10 - CCDS5612.1xxxSRI ACAAAATATAA 7 103973794 . GCA G . PASS IC=0;IHP=3;NT=ref;QSI=61;QSI_NT=61;RC=1;RU=CA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 47:47:46,47:0,0:1,0:47.68:1.02:0.00 40:40:22,22:14,15:1,1:33.54:0.00:0.00 + CAAAGGCAACA 7 107004941 . AT A . PASS IC=3;IHP=6;NT=ref;QSI=49;QSI_NT=49;RC=4;RU=T;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:28,28:0,0:0,0:27.59:0.05:0.00 53:53:27,28:20,20:6,6:47.75:0.00:0.00 10 + CCDS5744.1xxxGPR22 TAAGAATTTTC 7 110336477 . T TTC . PASS IC=3;IHP=6;NT=ref;QSI=27;QSI_NT=27;RC=2;RU=TC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 25:25:19,19:0,0:6,6:23.88:0.88:0.00 33:33:16,17:9,9:8,8:34.35:0.00:0.00 10 + CCDS5754.1xxxLRRN3 CCTTTTTCTCT 7 111081403 . AC A . PASS IC=0;IHP=2;NT=ref;QSI=60;QSI_NT=60;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 39:39:39,39:0,0:0,0:38.97:0.00:0.00 36:36:20,20:15,16:1,1:37.54:0.00:0.00 10 - CCDS5753.1xxxIMMP2L GCAAGTGTGCA 7 112812442 . AT A . PASS IC=4;IHP=5;NT=ref;QSI=36;QSI_NT=36;RC=5;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 43:43:41,41:0,0:2,2:41.98:0.00:0.00 27:27:17,17:7,7:2,2:28.72:0.00:0.00 + TGTTGATTTTT 7 146020440 . A ATC . PASS IC=6;IHP=2;NT=ref;QSI=68;QSI_NT=68;RC=5;RU=TC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 40:40:38,38:0,0:1,1:36.7:0.00:0.00 33:33:11,11:13,13:9,9:30.69:0.00:0.00 10 + CCDS5889.1xxxCNTNAP2 CTTTGATCTCT 7 155092765 . TGTCAAA T . PASS IC=0;IHP=3;NT=ref;QSI=25;QSI_NT=25;RC=1;RU=GTCAAA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:32,32:0,0:1,1:31.8:0.01:0.00 38:38:28,29:8,8:4,3:34.92:0.00:0.00 10 + CCDS5939.1xxxINSIG1 CAGACTGTCAA 7 155404470 . CGG C . PASS IC=1;IHP=5;NT=ref;QSI=69;QSI_NT=69;RC=3;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:33,33:0,0:0,0:34.97:0.42:0.00 32:32:12,12:16,16:4,4:33.46:0.00:0.00 + CCTCCCGGGTT 7 156775783 . CTG C . PASS IC=0;IHP=3;NT=ref;QSI=27;QSI_NT=27;RC=1;RU=TG;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 29:29:29,29:0,0:0,0:28.12:0.00:0.00 47:47:32,33:10,14:1,1:41.82:0.00:0.00 + ATAAACTGTAT 8 860369 . AT A . PASS IC=2;IHP=5;NT=ref;QSI=79;QSI_NT=78;RC=3;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 37:37:35,35:0,0:2,2:38.16:0.22:0.00 29:29:10,10:17,17:2,2:28.98:0.00:0.00 + TGATTATTTGT 8 3685599 . A AG . PASS IC=2;IHP=2;NT=ref;QSI=45;QSI_NT=45;RC=1;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 26:26:26,26:0,0:0,0:26.51:0.00:0.00 38:38:21,21:16,16:1,1:37.83:0.00:0.00 10 - CCDS55189.1xxxCSMD1 AAGCTCTGTGT 8 14402575 . GC G . PASS IC=0;IHP=2;NT=ref;QSI=89;QSI_NT=85;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 41:41:40,40:0,0:0,0:39.91:0.01:0.00 38:38:15,15:21,21:2,2:34.38:0.00:0.00 10 - CCDS5992.2xxxSGCZ TTTACAGCTGG 8 43753293 . G GT . PASS IC=1;IHP=5;NT=ref;QSI=57;QSI_NT=57;RC=0;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 29:29:28,28:0,0:0,0:26.94:0.00:0.00 33:33:14,14:17,17:2,2:35.81:0.00:0.00 + TGGGGGCTCCA 8 43793147 . GT G . PASS IC=3;IHP=4;NT=ref;QSI=27;QSI_NT=27;RC=4;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:32,33:0,0:0,0:30.63:0.00:0.00 43:43:25,26:8,8:5,5:48.06:0.41:0.00 + GAGCAGTTTTG 8 47133881 . CT C . PASS IC=2;IHP=3;NT=ref;QSI=55;QSI_NT=55;RC=3;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:29,30:0,0:0,0:28.23:0.92:0.00 42:42:20,21:19,20:3,2:36.37:0.00:0.00 + CCTGGCTTTGG 8 63665112 . CA C . PASS IC=0;IHP=3;NT=ref;QSI=64;QSI_NT=64;RC=1;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 41:41:42,42:0,0:0,0:42.17:0.00:0.00 33:33:17,17:12,14:3,1:36.79:0.00:0.00 10 + CCDS55239.1xxxNKAIN3 TGCCTCACAAG 8 68534912 . G GA . PASS IC=8;IHP=11;NT=ref;QSI=31;QSI_NT=31;RC=7;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:24,24:0,0:4,4:27.16:0.47:0.00 30:30:17,17:9,9:4,4:36.47:0.00:0.00 10 - CCDS6200.1xxxCPA6 TTTTTTCTTTT 8 69335348 . TGGAGA T . PASS IC=0;IHP=3;NT=ref;QSI=49;QSI_NT=49;RC=1;RU=GGAGA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:34,34:0,0:0,0:32.05:0.00:0.00 47:47:25,25:14,15:6,5:42.73:0.00:0.00 10 + CCDS6203.2xxxC8orf34 TGTCTTGGAGA 8 72054181 . ATC A . PASS IC=0;IHP=2;NT=ref;QSI=75;QSI_NT=75;RC=1;RU=TC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 43:43:42,42:0,0:2,2:41.8:0.00:0.00 40:40:17,17:17,17:6,6:37:0.00:0.00 + GAGATATCTAG 8 82941336 . GC G . PASS IC=5;IHP=8;NT=ref;QSI=56;QSI_NT=56;RC=6;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 38:38:38,38:0,0:1,1:37.43:0.00:0.00 39:39:21,21:15,15:3,3:38.89:0.00:0.00 + GCTCTGCCCCC 8 84240458 . GC G . PASS IC=0;IHP=4;NT=ref;QSI=49;QSI_NT=49;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 36:36:36,36:0,0:0,0:36.21:0.00:0.00 36:36:21,21:13,13:2,2:34.79:0.00:0.00 + TACCTGCTTTC 8 86056562 . TTCTC T . PASS IC=0;IHP=3;NT=ref;QSI=63;QSI_NT=63;RC=2;RU=TC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 30:30:30,30:0,0:1,1:31.87:0.10:0.00 33:33:12,12:17,18:4,4:32.54:0.00:0.00 10 + CCDS43750.1xxxLRRCC1 TGGGATTCTCT 8 100267769 . AG A . PASS IC=2;IHP=3;NT=ref;QSI=78;QSI_NT=78;RC=3;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 58:58:57,57:0,0:0,0:60.67:0.00:0.00 48:48:25,26:18,18:5,4:47.36:0.00:0.00 10 + CCDS6280.1xxxVPS13B GTGGAAGGGAA 8 100391506 . AAG A . PASS IC=0;IHP=5;NT=ref;QSI=48;QSI_NT=48;RC=1;RU=AG;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 51:51:52,52:0,0:1,1:49.5:0.62:0.00 36:36:23,23:10,10:3,3:39.63:0.00:0.00 10 + CCDS6280.1xxxVPS13B TTCACAAGAAA 8 100416613 . TCA T . PASS IC=1;IHP=2;NT=ref;QSI=26;QSI_NT=26;RC=2;RU=CA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 57:57:55,55:0,0:1,1:56.43:0.42:0.00 37:37:28,28:4,4:5,5:36.76:0.00:0.00 10 + CCDS6280.1xxxVPS13B GAATGTCACAT 8 101968874 . GAGTGA G . PASS IC=0;IHP=3;NT=ref;QSI=22;QSI_NT=22;RC=1;RU=AGTGA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 44:44:45,45:0,0:0,0:45.95:0.47:0.00 45:45:34,34:5,6:4,5:44.43:0.00:0.00 + TTCAGGAGTGA 8 107945653 . G GA . PASS IC=4;IHP=5;NT=ref;QSI=40;QSI_NT=40;RC=3;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 46:46:45,45:0,0:1,1:45.74:0.12:0.00 41:41:27,27:10,10:4,4:43.09:0.00:0.00 + AATAGGAAATA 8 111712829 . AT A . PASS IC=7;IHP=8;NT=ref;QSI=31;QSI_NT=31;RC=8;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 42:42:39,39:1,1:2,2:42.06:0.01:0.00 48:48:25,25:15,15:8,8:48.23:0.00:0.00 + ATATAATTTTT 8 113186369 . C CA . PASS IC=4;IHP=5;NT=ref;QSI=60;QSI_NT=60;RC=3;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 69:69:66,66:0,0:2,2:67.25:0.69:0.00 40:40:19,19:10,10:9,9:36.86:0.00:0.00 + AATAACAAATT 8 116048848 . GCCCTTCACC G . PASS IC=0;IHP=5;NT=ref;QSI=20;QSI_NT=20;RC=1;RU=CCCTTCACC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 42:42:43,44:0,0:1,0:44.37:0.87:0.00 41:41:36,37:5,5:6,6:45.56:0.09:0.00 + GAGGGGCCCTT 8 118073910 . TG T . PASS IC=2;IHP=3;NT=ref;QSI=34;QSI_NT=34;RC=3;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 38:38:36,36:0,0:2,2:38.79:0.89:0.00 52:52:32,32:11,12:9,9:55.55:0.01:0.00 + AAATCTGGGCT 8 119711831 . G GT . PASS IC=9;IHP=9;NT=ref;QSI=59;QSI_NT=59;RC=8;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 62:62:57,58:0,0:5,5:58.07:1.61:0.00 53:53:31,31:14,14:6,6:47.12:0.00:0.00 + GTTTGGTTTTT 8 121301558 . TA T . PASS IC=1;IHP=3;NT=ref;QSI=56;QSI_NT=56;RC=2;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 53:53:53,53:0,0:0,0:55.5:0.01:0.00 53:53:31,31:14,14:8,8:55.15:0.00:0.00 10 + CCDS34938.1xxxCOL14A1 TCCTGTAATTT 8 121652056 . GC G . PASS IC=1;IHP=2;NT=ref;QSI=90;QSI_NT=89;RC=2;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 59:59:57,57:0,0:0,0:54.84:0.01:0.00 42:42:19,19:18,18:5,5:41.39:0.00:0.00 10 - CCDS6334.1xxxSNTB1 CTGAAGGCATC 8 124327819 . TG T . PASS IC=6;IHP=10;NT=ref;QSI=22;QSI_NT=22;RC=7;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 51:51:48,55:0,0:3,3:49.62:7.51:0.00 55:55:46,49:6,7:4,4:45.67:0.11:0.00 + ATGGGTGGGGG 8 128553545 . C CAT . PASS IC=2;IHP=6;NT=ref;QSI=43;QSI_NT=43;RC=1;RU=AT;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 50:50:49,49:0,0:1,1:52.17:0.18:0.00 55:55:36,39:13,13:7,7:55.89:0.00:0.00 + CTCATCATTTT 9 3360715 . TA T . PASS IC=5;IHP=8;NT=ref;QSI=52;QSI_NT=52;RC=6;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 31:31:30,30:0,0:1,1:33.13:0.09:0.00 36:36:18,18:15,15:3,3:42.03:0.00:0.00 10 - CCDS6449.1xxxRFX3 CTTTTTTAAAA 9 8461822 . A AT . PASS IC=9;IHP=9;NT=ref;QSI=50;QSI_NT=50;RC=8;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 31:31:29,29:0,0:2,2:31.92:0.22:0.00 34:34:15,15:13,13:5,5:29.6:0.00:0.00 10 - CCDS43786.1xxxPTPRD AAAAAATTTTT 9 11734387 . AG A . PASS IC=1;IHP=2;NT=ref;QSI=59;QSI_NT=59;RC=2;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 29:29:29,29:0,0:0,0:26.94:0.00:0.00 41:41:18,18:20,20:2,2:39.14:0.00:0.00 + CATACAGGCTT 9 33839470 . AG A . PASS IC=1;IHP=3;NT=ref;QSI=47;QSI_NT=47;RC=2;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:35,37:0,0:0,0:36.07:0.00:0.00 28:28:17,18:11,11:0,0:32.43:0.00:0.00 10 + CCDS6546.1xxxUBE2R2 ACCTCAGGTGA 9 40548084 . C CT . PASS IC=4;IHP=4;NT=ref;QSI=21;QSI_NT=21;RC=3;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 43:43:41,44:0,0:2,2:38.54:0.34:0.00 48:48:39,41:6,6:2,2:39.28:0.00:0.00 + GGTATCTTTGG 9 45357072 . G GC . PASS IC=3;IHP=3;NT=ref;QSI=25;QSI_NT=25;RC=2;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 39:39:39,39:0,0:0,0:38.53:0.00:0.00 25:25:15,15:4,6:5,6:23.42:0.52:0.00 + CCTGCGCCGGG 9 73899843 . A AT . PASS IC=7;IHP=8;NT=ref;QSI=56;QSI_NT=56;RC=6;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 31:31:29,29:0,0:2,2:29.84:0.00:0.00 28:28:11,11:13,13:3,3:30.89:0.00:0.00 + ATTACATTTTT 9 75203370 . AG A . PASS IC=0;IHP=3;NT=ref;QSI=53;QSI_NT=53;RC=1;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:33,33:0,0:0,0:34.33:0.00:0.00 28:28:11,12:11,11:6,5:27.75:0.00:0.00 + CAGGCAGTGGA 9 95543241 . TC T . PASS IC=2;IHP=6;NT=ref;QSI=50;QSI_NT=50;RC=3;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 25:25:25,25:0,0:0,0:26.39:0.00:0.00 34:34:13,13:18,18:2,2:31.47:0.00:0.00 + TGCCCTCCCTT 9 99848953 . AAC A . PASS IC=0;IHP=4;NT=ref;QSI=49;QSI_NT=49;RC=1;RU=AC;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 29:29:28,28:0,0:0,0:30.56:0.00:0.00 39:39:19,20:15,16:4,3:38.69:0.00:0.00 + CCATAAACTCA 9 107903499 . GA G . PASS IC=2;IHP=4;NT=ref;QSI=33;QSI_NT=33;RC=3;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 30:30:30,30:0,0:0,0:30.48:0.00:0.00 38:38:21,21:8,11:7,4:34.58:0.39:0.00 + GCCCCGAAAGG 9 120811784 . C CT . PASS IC=8;IHP=8;NT=ref;QSI=52;QSI_NT=52;RC=7;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 39:39:37,37:0,0:2,2:38.78:0.00:0.00 31:31:15,15:11,11:5,5:32.14:0.00:0.00 + TGTATCTTTTT 9 122330456 . AG A . PASS IC=0;IHP=5;NT=ref;QSI=51;QSI_NT=51;RC=1;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:33,33:0,0:0,0:34.36:0.10:0.00 39:39:22,22:15,15:1,1:39.01:0.06:0.00 + AAAAGAGATCA 9 128843587 . CG C . PASS IC=4;IHP=6;NT=ref;QSI=58;QSI_NT=58;RC=5;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:28,28:0,0:0,0:30:0.00:0.00 43:43:16,16:21,21:6,6:43.01:0.00:0.00 + GGATGCGGGGG 10 2532984 . TA T . PASS IC=1;IHP=4;NT=ref;QSI=47;QSI_NT=47;RC=2;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 29:29:30,31:0,0:0,0:31.41:0.01:0.00 39:39:18,18:13,13:9,9:34.7:0.00:0.00 + AAACCTAATTT 10 6834076 . A ATT . PASS IC=2;IHP=12;NT=ref;QSI=20;QSI_NT=20;RC=0;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 43:43:42,42:0,0:3,3:45.97:1.72:0.00 29:29:24,25:5,6:6,5:37.65:0.00:0.00 + GAAGAAAAAAA 10 14298190 . TAATTGA T . PASS IC=0;IHP=6;NT=ref;QSI=67;QSI_NT=67;RC=1;RU=AATTGA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:35,35:0,0:1,1:33.69:0.00:0.00 33:33:15,15:16,16:2,2:34.73:0.00:0.00 10 - CCDS7101.1xxxFRMD4A TATTTTTCAAT 10 23178850 . TCC T . PASS IC=0;IHP=2;NT=ref;QSI=98;QSI_NT=85;RC=2;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 37:37:36,36:0,0:1,1:41.81:0.00:0.00 27:27:7,8:20,22:0,0:29.13:0.00:0.00 + TCCCTTCCTTA 10 32454465 . GT G . PASS IC=4;IHP=10;NT=ref;QSI=52;QSI_NT=52;RC=5;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 30:30:28,28:0,0:2,2:28.01:0.00:0.00 50:50:22,22:19,19:7,7:50.64:0.00:0.00 + CTTTTGTTTTT 10 37116822 . A AT . PASS IC=6;IHP=6;NT=ref;QSI=68;QSI_NT=68;RC=5;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 31:31:31,32:0,0:0,0:32.08:0.36:0.00 31:31:12,12:18,18:0,0:40.83:0.00:0.00 + AATACATTTTT 10 38941716 . CA C . PASS IC=2;IHP=5;NT=ref;QSI=26;QSI_NT=26;RC=3;RU=A;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 43:43:43,44:0,0:0,0:43.92:0.28:0.00 26:26:17,21:5,5:4,4:26.17:0.00:0.00 + CATAACAAAGG 10 48493023 . CA C . PASS IC=0;IHP=3;NT=ref;QSI=43;QSI_NT=43;RC=1;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:28,28:0,0:0,0:31.5:0.00:0.00 27:27:13,13:10,10:3,3:30.12:0.00:0.00 + CAGCCCAGCTC 10 50960807 . AGGGTG A . PASS IC=0;IHP=7;NT=ref;QSI=20;QSI_NT=20;RC=1;RU=GGGTG;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 37:37:38,38:0,0:0,0:35.63:0.00:0.00 34:34:29,29:5,5:1,1:35.81:0.00:0.00 10 - CCDS44390.1xxxOGDHL CAGCCCCACCC 10 53802930 . AAAAAT A . PASS IC=0;IHP=6;NT=ref;QSI=62;QSI_NT=62;RC=1;RU=AAAAT;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 31:31:32,33:0,0:0,0:32.09:0.00:0.00 35:35:15,15:16,16:5,5:34.55:0.00:0.00 10 + CCDS44399.1xxxPRKG1 CCTCAAAAAAT 10 57580317 . GAGAAGAGCTGCTAACTC G . PASS IC=0;IHP=3;NT=ref;QSI=59;QSI_NT=59;RC=1;RU=AGAAGAGCTGCTAACTC;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 39:39:41,41:0,0:0,0:40.24:0.00:0.00 40:40:20,21:14,14:2,1:34.95:0.30:0.00 + GTCCTGAGAAG 10 85394403 . G GT . PASS IC=4;IHP=5;NT=ref;QSI=52;QSI_NT=52;RC=3;RU=T;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 30:30:30,30:0,0:0,0:30.9:0.74:0.00 35:35:17,18:15,15:2,2:33.28:0.00:0.00 + CAGGGGTTTGT 10 100513465 . GC G . PASS IC=5;IHP=6;NT=ref;QSI=45;QSI_NT=45;RC=6;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:27,27:0,0:2,2:27.51:0.01:0.00 37:37:16,17:13,13:8,7:34.36:0.00:0.00 10 - CCDS53566.1xxxHPSE2 TGGGGGGCTGG 10 101584846 . T TA . PASS IC=1;IHP=6;NT=ref;QSI=32;QSI_NT=32;RC=0;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 29:29:29,30:0,0:0,0:27.97:0.00:0.00 50:50:33,36:13,15:4,3:44.55:0.00:0.00 10 + CCDS7484.1xxxABCC2 CATTTTTTCCT 10 113885249 . TCG T . PASS IC=0;IHP=2;NT=ref;QSI=51;QSI_NT=51;RC=1;RU=CG;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:28,28:0,0:0,0:28.3:0.00:0.00 34:34:16,17:14,15:5,4:33.92:0.00:0.00 + GAAGCTCGTTA 10 120305420 . ACCTGCAGAGCTGTTGT A . PASS IC=0;IHP=5;NT=ref;QSI=39;QSI_NT=39;RC=1;RU=CCTGCAGAGCTGTTGT;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 38:38:40,40:0,0:0,0:36.79:0.00:0.00 39:39:23,23:9,9:5,5:42.04:0.00:0.00 + CAAGCACCTGC 11 7526774 . AC A . PASS IC=0;IHP=3;NT=ref;QSI=42;QSI_NT=42;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 36:36:36,37:0,0:0,0:37.24:0.26:0.00 35:35:19,19:10,11:5,5:36.04:0.00:0.00 10 + CCDS7779.1xxxOLFML1 AGTCCACAACT 11 10970430 . GA G . PASS IC=1;IHP=2;NT=ref;QSI=50;QSI_NT=50;RC=2;RU=A;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 30:30:30,30:0,0:0,0:29.45:0.00:0.00 29:29:15,16:13,13:1,1:28.18:0.21:0.00 + GCTGTGAATCC 11 20479743 . AT A . PASS IC=3;IHP=7;NT=ref;QSI=81;QSI_NT=80;RC=4;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 39:39:36,36:0,0:3,3:37.58:0.00:0.00 28:28:8,8:15,15:5,5:32.16:0.00:0.00 10 + CCDS44554.1xxxPRMT3 GGTTTATTTTG 11 21384794 . G GT . PASS IC=1;IHP=4;NT=ref;QSI=60;QSI_NT=60;RC=0;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:35,35:0,0:0,0:40.24:0.01:0.00 39:39:17,17:15,15:7,7:38.2:0.00:0.00 10 + CCDS44555.1xxxNELL1 CTGGGGCTCAA 11 23068917 . AG A . PASS IC=2;IHP=4;NT=ref;QSI=77;QSI_NT=76;RC=3;RU=G;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:35,35:0,0:0,0:34.16:0.00:0.00 43:43:16,17:22,22:4,4:37.49:0.00:0.00 + GAACAAGGGCT 11 23692259 . A AT . PASS IC=2;IHP=2;NT=ref;QSI=76;QSI_NT=75;RC=1;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 36:36:35,35:0,0:0,0:37.56:0.03:0.00 28:28:8,8:14,14:4,4:27.47:0.00:0.00 + ACAGTATAGTG 11 25313745 . TG T . PASS IC=3;IHP=6;NT=ref;QSI=50;QSI_NT=50;RC=4;RU=G;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 26:26:26,26:0,0:0,0:21.8:0.01:0.00 36:36:14,16:17,17:5,4:32.38:0.00:0.00 + AATGGTGGGGA 11 25989207 . G GC . PASS IC=1;IHP=3;NT=ref;QSI=68;QSI_NT=68;RC=0;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 30:30:30,30:0,0:0,0:33.34:0.02:0.00 41:41:14,14:23,24:4,4:39.69:0.00:0.00 + ATTAGGTGTAA 11 42528747 . AT A . PASS IC=7;IHP=9;NT=ref;QSI=62;QSI_NT=62;RC=8;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:30,30:0,0:3,3:30.49:0.00:0.00 45:45:10,11:13,16:21,18:41.18:0.00:0.00 + ATGCTATTTTT 11 55731331 . TC T . PASS IC=0;IHP=2;NT=ref;QSI=85;QSI_NT=82;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 36:36:35,35:0,0:0,0:33.64:0.01:0.00 37:37:12,12:23,23:3,3:37:0.00:0.00 + ACAACTCTGGA 11 62927012 . G GT . PASS IC=2;IHP=4;NT=ref;QSI=85;QSI_NT=82;RC=1;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 37:37:37,37:0,0:0,0:33.98:0.00:0.00 43:43:16,16:23,23:4,4:40.13:0.00:0.00 + GCCAGGTGGAA 11 76007055 . TG T . PASS IC=4;IHP=5;NT=ref;QSI=50;QSI_NT=50;RC=5;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 26:26:24,25:0,0:2,2:27.49:0.00:0.00 40:40:10,10:18,18:12,12:35.7:0.00:0.00 + TGAGTTGGGGG 11 82716999 . TA T . PASS IC=5;IHP=11;NT=ref;QSI=43;QSI_NT=43;RC=6;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 39:39:38,38:1,1:0,0:41.56:0.78:0.00 26:26:10,11:14,15:2,1:29.35:0.00:0.00 + TTTTTTAAAAA 11 98506109 . TGC T . PASS IC=0;IHP=3;NT=ref;QSI=54;QSI_NT=54;RC=1;RU=GC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 29:29:28,28:0,0:1,1:26.95:0.14:0.00 30:30:14,14:14,14:2,2:31.6:0.00:0.00 + ATAAATGCACA 11 105503030 . CA C . PASS IC=0;IHP=2;NT=ref;QSI=67;QSI_NT=67;RC=1;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 41:41:41,41:0,0:0,0:38.49:0.25:0.00 25:25:11,12:12,13:2,3:24.14:0.00:0.00 10 + CCDS41707.1xxxGRIA4 CATCTCATCTC 11 112616403 . AG A . PASS IC=0;IHP=3;NT=ref;QSI=74;QSI_NT=74;RC=1;RU=G;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 43:43:43,43:0,0:0,0:41.76:0.20:0.00 38:38:16,18:17,17:5,4:33.45:0.00:0.00 + CAGCCAGAGGA 11 115975229 . GC G . PASS IC=0;IHP=2;NT=ref;QSI=81;QSI_NT=80;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 44:44:44,44:0,0:0,0:41.34:0.09:0.00 48:48:23,24:22,22:2,1:45.07:0.00:0.00 + TTACAGCTTGG 11 131539297 . G GT . PASS IC=6;IHP=6;NT=ref;QSI=43;QSI_NT=43;RC=5;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 27:27:25,25:0,0:2,2:28.9:0.00:0.00 37:37:19,19:15,15:3,3:37.57:0.00:0.00 10 + CCDS44778.1xxxNTM AGGAGGTTTTT 12 3705449 . C CA . PASS IC=2;IHP=4;NT=ref;QSI=92;QSI_NT=89;RC=1;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 51:51:50,50:0,0:1,1:47.94:0.00:0.00 40:40:14,15:18,18:8,7:34.72:0.00:0.00 + CTGATCACCCG 12 5422415 . CA C . PASS IC=1;IHP=4;NT=ref;QSI=89;QSI_NT=85;RC=2;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 42:42:42,42:0,0:0,0:39.68:0.00:0.00 40:40:15,15:20,20:5,5:42.6:0.00:0.00 + CTTAACAAGTT 12 18490056 . G GA . PASS IC=6;IHP=6;NT=ref;QSI=49;QSI_NT=49;RC=5;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 29:29:27,28:0,0:2,2:28.94:0.00:0.00 36:36:15,15:14,14:7,7:33.58:0.00:0.00 10 + CCDS44839.1xxxPIK3C2G TTTTTGAAAAA 12 21570089 . CAA C . PASS IC=1;IHP=7;NT=ref;QSI=46;QSI_NT=46;RC=3;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 25:25:24,24:0,0:0,0:25.66:0.31:0.00 44:44:18,18:24,24:2,2:41.54:0.00:0.00 + AGAAACAAAGA 12 28633855 . GA G . PASS IC=0;IHP=3;NT=ref;QSI=61;QSI_NT=61;RC=1;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 43:43:43,43:0,0:0,0:42.18:0.00:0.00 41:41:22,22:15,15:4,4:37.61:0.00:0.00 10 + CCDS8716.1xxxCCDC91 TAGTAGATTTA 12 40525874 . GA G . PASS IC=4;IHP=5;NT=ref;QSI=103;QSI_NT=87;RC=5;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 40:40:40,40:0,0:0,0:37.54:0.34:0.00 37:37:11,11:24,24:2,2:37.76:0.00:0.00 + CTGTTGAAAAA 12 57431998 . AC A . PASS IC=0;IHP=3;NT=ref;QSI=62;QSI_NT=62;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 30:30:30,30:0,0:1,1:31.23:0.75:0.00 26:26:10,10:14,14:2,2:24.95:0.00:0.00 10 - CCDS8929.1xxxMYO1A ATAGAAGTGAG 12 58934615 . A AT . PASS IC=8;IHP=8;NT=ref;QSI=66;QSI_NT=66;RC=7;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:32,32:0,0:1,1:33.16:0.59:0.00 30:30:10,10:14,15:5,5:33.45:0.00:0.00 + AAATGATTTTT 12 77280262 . TC T . PASS IC=3;IHP=6;NT=ref;QSI=76;QSI_NT=76;RC=4;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 45:45:42,42:0,0:1,1:42.43:0.13:0.00 36:36:18,18:18,18:2,2:39.81:0.00:0.00 + AGACCTCCCCA 12 78029433 . TA T . PASS IC=4;IHP=5;NT=ref;QSI=55;QSI_NT=55;RC=5;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 29:29:29,29:0,0:0,0:32.19:0.01:0.00 36:36:16,16:16,16:3,3:37.23:0.00:0.00 + CACCTTAAAAA 12 87200788 . G GTATA . PASS IC=7;IHP=5;NT=ref;QSI=31;QSI_NT=31;RC=5;RU=TA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 37:37:35,36:0,0:2,2:34.77:0.83:0.00 31:31:16,18:6,6:9,7:33.69:0.21:0.00 + AAAAAGTATAT 12 93974348 . AATCTT A . PASS IC=0;IHP=3;NT=ref;QSI=20;QSI_NT=20;RC=1;RU=ATCTT;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 29:29:29,29:0,0:0,0:27.57:2.87:0.00 26:26:18,20:5,5:6,6:28.11:0.00:0.00 + GCGGCAATCTT 12 106517902 . GT G . PASS IC=4;IHP=10;NT=ref;QSI=61;QSI_NT=61;RC=5;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:30,30:0,0:3,3:30.36:0.00:0.00 37:37:13,13:16,16:8,8:34.07:0.00:0.00 10 - CCDS31892.1xxxNUAK1 ACAAAAACTCT 12 110093885 . CCCCA C . PASS IC=0;IHP=7;NT=ref;QSI=24;QSI_NT=24;RC=1;RU=CCCA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:32,32:0,0:1,1:35.13:0.00:0.00 26:26:17,17:5,5:5,5:27.51:0.00:0.00 + CTGGGCCCCAC 12 114710274 . AG A . PASS IC=4;IHP=6;NT=ref;QSI=69;QSI_NT=69;RC=5;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:36,36:0,0:0,0:38.77:0.53:0.00 32:32:13,13:15,15:4,4:34.66:0.00:0.00 + AGCAGAGGGGG 13 22554463 . AT A . PASS IC=3;IHP=5;NT=ref;QSI=65;QSI_NT=65;RC=4;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:32,32:0,0:0,0:32.29:0.00:0.00 49:49:20,20:21,21:7,7:44.97:0.00:0.00 + TATGTATTTTA 13 23496516 . AT A . PASS IC=2;IHP=4;NT=ref;QSI=69;QSI_NT=69;RC=3;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 41:41:41,41:0,0:0,0:40.97:0.39:0.00 29:29:12,12:13,13:2,2:26.14:0.00:0.00 + TGAACATTTAT 13 25995369 . GTT G . PASS IC=2;IHP=8;NT=ref;QSI=62;QSI_NT=62;RC=4;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 30:30:31,31:0,0:0,0:29.45:0.00:0.00 39:39:15,15:17,17:7,7:39.06:0.00:0.00 10 + CCDS41873.1xxxATP8A2 ATTTTGTTTTC 13 31324176 . GCATCA G . PASS IC=0;IHP=2;NT=ref;QSI=26;QSI_NT=26;RC=1;RU=CATCA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 29:29:31,31:0,0:0,0:31.77:0.00:0.00 43:43:31,32:9,9:6,6:42.46:0.54:0.00 10 + CCDS9337.1xxxALOX5AP CATCAGCATCA 13 32621189 . T TATAG . PASS IC=1;IHP=2;NT=ref;QSI=23;QSI_NT=23;RC=0;RU=ATAG;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 41:41:38,38:0,0:3,3:41.93:8.42:0.00 30:30:4,17:4,4:21,8:28.18:4.70:0.00 10 + CCDS41875.1xxxFRY ATGTATATATA 13 51815716 . G GA . PASS IC=1;IHP=3;NT=ref;QSI=53;QSI_NT=53;RC=0;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:35,36:0,0:0,0:37.69:0.00:0.00 39:39:19,19:13,15:3,1:43.48:6.82:0.00 10 + CCDS55900.1xxxFAM124A TGACTGTCTTA 13 53984658 . TG T . PASS IC=1;IHP=2;NT=ref;QSI=55;QSI_NT=55;RC=2;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 31:31:31,31:0,0:0,0:34.5:0.00:0.00 33:33:15,15:14,14:2,2:40.45:0.00:0.00 + ACCCTTGGCCT 13 70102659 . CG C . PASS IC=3;IHP=4;NT=ref;QSI=30;QSI_NT=30;RC=4;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:27,27:0,0:1,1:26.8:0.00:0.00 30:30:18,18:7,9:6,5:29.81:0.00:0.00 + AGAGACGGGGT 13 71829513 . AG A . PASS IC=0;IHP=2;NT=ref;QSI=66;QSI_NT=66;RC=1;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 30:30:31,32:0,0:0,0:32.35:0.22:0.00 28:28:11,11:16,16:1,1:32.62:0.05:0.00 + GATCCAGACTC 13 96025647 . AT A . PASS IC=5;IHP=6;NT=ref;QSI=56;QSI_NT=56;RC=6;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 47:47:44,45:0,0:3,3:44.21:0.07:0.00 55:55:35,36:18,18:3,3:57.51:0.00:0.00 + AAGTAATTTTT 13 96790587 . AT A . PASS IC=3;IHP=6;NT=ref;QSI=22;QSI_NT=22;RC=4;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 36:36:35,35:0,0:1,1:35.34:0.02:0.00 46:46:31,31:7,7:9,9:43.11:0.00:0.00 10 + CCDS9481.1xxxHS6ST3 AACTTATTTTA 13 97160187 . T TA . PASS IC=2;IHP=3;NT=ref;QSI=79;QSI_NT=78;RC=1;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 61:61:59,59:0,0:1,1:58.22:0.01:0.00 49:49:27,27:18,19:2,2:52.71:0.00:0.00 10 + CCDS9481.1xxxHS6ST3 TACTTTACCAA 13 104082703 . GC G . PASS IC=0;IHP=4;NT=ref;QSI=50;QSI_NT=50;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 31:31:31,31:0,0:0,0:34.01:0.52:0.00 40:40:23,23:16,16:1,1:41.85:0.00:0.00 + TAGCTGCTTTT 13 106418747 . AG A . PASS IC=0;IHP=2;NT=ref;QSI=35;QSI_NT=35;RC=1;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 25:25:24,24:0,0:0,0:30.15:0.00:0.00 27:27:16,16:10,10:1,1:25.17:0.00:0.00 + TTGCAAGCAAC 13 112963878 . AG A . PASS IC=1;IHP=2;NT=ref;QSI=28;QSI_NT=28;RC=2;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 64:64:61,67:0,0:2,2:61.35:2.43:0.00 54:54:45,45:6,7:3,3:52.4:0.00:0.00 + GAGCCAGGTAA 13 114947730 . TCTCCG T . PASS IC=0;IHP=5;NT=ref;QSI=20;QSI_NT=20;RC=1;RU=CTCCG;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 39:39:40,40:0,0:0,0:36.42:0.00:0.00 42:42:33,35:5,6:5,5:37.84:0.00:0.00 + GTTTCTCTCCG 14 20146392 . GT G . PASS IC=3;IHP=4;NT=ref;QSI=22;QSI_NT=22;RC=4;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 43:43:39,42:0,0:0,0:37.98:0.00:0.00 69:69:52,57:10,11:7,8:65.14:0.00:0.00 + CGGAAGTTTTG 14 24158560 . CTGGAGA C . PASS IC=0;IHP=3;NT=ref;QSI=78;QSI_NT=77;RC=1;RU=TGGAGA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:35,35:0,0:1,1:34.98:0.00:0.00 33:33:13,13:17,19:4,3:32.85:0.00:0.00 + CTTTGCTGGAG 14 25976256 . TA T . PASS IC=3;IHP=10;NT=ref;QSI=36;QSI_NT=36;RC=4;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:36,36:0,0:0,0:37.67:0.30:0.00 29:29:18,18:8,8:3,3:33.29:0.00:0.00 + TTTTTTAAAAG 14 37673275 . C CA . PASS IC=1;IHP=3;NT=ref;QSI=67;QSI_NT=66;RC=0;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:32,33:0,0:0,0:31.25:0.27:0.00 31:31:11,11:15,15:3,3:31.88:0.00:0.00 + AGCCACTGCGC 14 48767397 . G GT . PASS IC=2;IHP=6;NT=ref;QSI=75;QSI_NT=75;RC=1;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:33,34:0,0:0,0:29.52:0.01:0.00 44:44:16,16:24,24:4,4:44.47:0.00:0.00 + TGGGGGTGCCC 14 50255266 . TTC T . PASS IC=4;IHP=5;NT=ref;QSI=30;QSI_NT=30;RC=5;RU=TC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 27:27:24,24:0,0:3,3:25.16:0.45:0.00 25:25:7,7:5,5:13,14:22.09:0.00:0.00 10 - CCDS9694.1xxxNEMF GAGAGAGAAAA 14 52683620 . TTTATATTA T . PASS IC=0;IHP=4;NT=ref;QSI=34;QSI_NT=34;RC=1;RU=TTATATTA;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 25:25:24,24:0,0:1,1:24.7:0.00:0.00 32:32:18,19:11,11:3,3:26.74:0.00:0.00 + ATGGATTTATA 14 56553552 . GT G . PASS IC=6;IHP=7;NT=ref;QSI=72;QSI_NT=71;RC=7;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 31:31:31,31:0,0:0,0:31.34:0.01:0.00 26:26:8,8:16,16:2,2:29.9:0.00:0.00 + AAAAAGTTTTT 14 67306204 . GT G . PASS IC=3;IHP=4;NT=ref;QSI=64;QSI_NT=64;RC=4;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 36:36:36,36:0,0:0,0:38.38:0.04:0.00 46:46:21,21:18,18:6,6:43.59:0.00:0.00 10 + CCDS32103.1xxxGPHN GGTCAGTTTTG 14 77538874 . AT A . PASS IC=1;IHP=4;NT=ref;QSI=39;QSI_NT=39;RC=2;RU=T;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 25:25:24,24:0,0:1,1:25.44:0.00:0.00 40:40:19,20:14,14:5,5:43.25:0.00:0.00 + GTCAAATTCTT 14 79138951 . AG A . PASS IC=0;IHP=3;NT=ref;QSI=53;QSI_NT=53;RC=1;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 29:29:28,28:0,0:0,0:32.68:0.00:0.00 47:47:21,21:19,20:7,7:43.48:0.00:0.00 10 + CCDS45145.1xxxNRXN3 AGAGAAGACTA 14 82510386 . GA G . PASS IC=6;IHP=9;NT=ref;QSI=76;QSI_NT=75;RC=7;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 37:37:35,35:0,0:2,2:34.58:0.00:0.00 37:37:13,13:18,18:4,4:37.38:0.00:0.00 + AAGAAGAAAAA 14 83908990 . AT A . PASS IC=0;IHP=6;NT=ref;QSI=67;QSI_NT=67;RC=1;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 34:34:34,34:0,0:0,0:34.82:0.01:0.00 26:26:11,11:14,14:2,2:30.18:0.00:0.00 + GAGTGATGGGG 14 94430952 . G GA . PASS IC=5;IHP=5;NT=ref;QSI=66;QSI_NT=66;RC=4;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:32,32:0,0:0,0:33.45:0.30:0.00 35:35:15,15:18,19:2,2:34.43:0.00:0.00 + AATCAGAAAAC 14 97168116 . AGG A . PASS IC=2;IHP=8;NT=ref;QSI=50;QSI_NT=50;RC=4;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 27:27:26,26:0,0:1,1:28.07:0.00:0.00 38:38:16,17:17,17:5,4:30.89:0.00:0.00 + TGGCCAGGGGA 15 24343916 . A AAT . PASS IC=9;IHP=4;NT=ref;QSI=47;QSI_NT=47;RC=8;RU=AT;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 34:34:29,30:0,0:5,4:36.44:0.28:0.00 32:32:13,14:11,13:8,8:33.99:0.04:0.00 + TACTAAATATA 15 46313819 . A AT . PASS IC=8;IHP=7;NT=ref;QSI=68;QSI_NT=68;RC=7;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 43:43:38,38:0,0:5,5:39.09:0.00:0.00 39:39:18,18:17,17:5,5:37.21:0.36:0.00 + GAGAAATTTTT 15 77219061 . ATGTGCGTATTTGC A . PASS IC=0;IHP=3;NT=ref;QSI=56;QSI_NT=56;RC=1;RU=TGTGCGTATTTGC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 29:29:32,32:0,0:0,0:31.32:0.00:0.00 32:32:16,16:14,14:7,7:32.71:0.00:0.00 + ATGAAATGTGC 15 79846454 . AG A . PASS IC=1;IHP=5;NT=ref;QSI=57;QSI_NT=57;RC=2;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 31:31:32,33:0,0:0,0:30.33:0.50:0.00 27:27:13,13:13,13:1,1:30.88:0.00:0.00 + AGCCAAGGCGG 15 87184636 . A AT . PASS IC=9;IHP=8;NT=ref;QSI=41;QSI_NT=41;RC=8;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:32,32:0,0:2,2:35.15:0.22:0.00 36:36:19,20:11,11:5,4:39.5:0.00:0.00 10 + CCDS58398.1xxxAGBL1 ACTCAATTTTT 15 95686455 . CACAATG C . PASS IC=0;IHP=3;NT=ref;QSI=50;QSI_NT=50;RC=1;RU=ACAATG;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 42:42:44,44:0,0:1,1:37.86:0.00:0.00 32:32:17,18:10,10:2,1:29.12:0.33:0.00 + ATCATCACAAT 15 99668206 . C CTTCATTCA . PASS IC=10;IHP=2;NT=ref;QSI=31;QSI_NT=31;RC=8;RU=TTCA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 45:45:38,38:0,0:7,7:42.77:0.02:0.00 28:28:12,12:5,5:11,11:25.6:0.00:0.00 + ACTTGCTTCAT 16 7575551 . AG A . PASS IC=1;IHP=4;NT=ref;QSI=49;QSI_NT=49;RC=2;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 31:31:29,30:0,0:2,2:29.74:0.00:0.00 31:31:12,12:11,11:8,8:34.77:0.00:0.00 10 + CCDS10532.1xxxRBFOX1 TAAGAAGGCCT 16 10093121 . CA C . PASS IC=1;IHP=4;NT=ref;QSI=28;QSI_NT=28;RC=2;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:33,33:0,0:0,0:32.95:0.26:0.00 34:34:21,21:7,7:6,6:34.21:0.00:0.00 10 - CCDS10539.1xxxGRIN2A ACTTCTTGAGT 16 10263994 . TA T . PASS IC=4;IHP=5;NT=ref;QSI=58;QSI_NT=58;RC=5;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 34:34:31,31:0,0:3,3:30.57:0.31:0.00 26:26:12,12:13,13:1,1:24.89:0.00:0.00 10 - CCDS10539.1xxxGRIN2A CATTTTTAAAT 16 32438432 . AT A . PASS IC=1;IHP=3;NT=ref;QSI=20;QSI_NT=20;RC=2;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 40:40:39,40:0,0:0,0:39.5:0.00:0.00 47:47:31,33:5,7:11,10:40.44:0.00:0.00 + ATTATATTACT 16 32490381 . CA C . PASS IC=0;IHP=5;NT=ref;QSI=22;QSI_NT=22;RC=1;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 37:37:36,40:0,0:0,0:35.39:0.03:0.00 60:60:47,58:9,17:4,4:56.44:0.00:0.00 + GAGACCAGGGG 16 33865573 . TG T . PASS IC=1;IHP=2;NT=ref;QSI=29;QSI_NT=29;RC=2;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 44:44:37,91:0,0:8,0:46.27:7.20:0.00 61:61:27,104:6,12:28,10:57.5:10.17:0.00 + TGGATTGGAAT 16 33916563 . AT A . PASS IC=7;IHP=10;NT=ref;QSI=55;QSI_NT=55;RC=8;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:30,30:0,0:3,3:32:0.93:0.00 27:27:11,11:12,12:4,5:32.43:0.00:0.00 + CAATAATTTTT 16 35157069 . T TA . PASS IC=8;IHP=8;NT=ref;QSI=55;QSI_NT=55;RC=7;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:33,33:0,0:2,2:33.72:0.00:0.00 33:33:13,13:12,13:8,8:33.8:0.00:0.00 + GATTCTAAAAA 16 65953734 . C CG . PASS IC=7;IHP=6;NT=ref;QSI=44;QSI_NT=44;RC=6;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:34,34:0,0:1,1:35.27:0.55:0.00 52:52:26,26:14,14:8,8:48.73:0.00:0.00 + AATCACGGGGG 16 70258859 . A AG . PASS IC=2;IHP=2;NT=ref;QSI=31;QSI_NT=31;RC=1;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:29,30:0,0:2,2:33.05:1.31:0.00 33:33:22,22:9,10:2,2:34.21:0.00:0.00 + GGCAGAGACAC 16 82460788 . ACGTAAT A . PASS IC=0;IHP=3;NT=ref;QSI=51;QSI_NT=51;RC=1;RU=CGTAAT;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:35,35:0,0:0,0:31.38:0.00:0.00 27:27:15,15:11,12:1,1:25.82:0.00:0.00 + AGCACACGTAA 17 13417882 . T TC . PASS IC=1;IHP=2;NT=ref;QSI=52;QSI_NT=52;RC=0;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:28,28:0,0:0,0:30.34:0.02:0.00 38:38:17,17:16,17:4,4:39.9:0.00:0.00 10 - CCDS11165.1xxxHS3ST3A1 AATGCCAGGAC 17 34027957 . ATTG A . PASS IC=0;IHP=4;NT=ref;QSI=50;QSI_NT=50;RC=1;RU=TTG;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 27:27:26,26:0,0:0,0:27.66:0.46:0.00 52:52:23,23:25,25:4,4:51.45:0.00:0.00 10 + CCDS32621.1xxxAP2B1 TTAATATTGTT 17 57821387 . G GT . PASS IC=6;IHP=6;NT=ref;QSI=59;QSI_NT=59;RC=5;RU=T;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 30:30:30,30:0,0:0,0:29.87:0.02:0.00 34:34:15,16:17,17:2,2:33.39:0.00:0.00 10 + CCDS11619.1xxxVMP1 TGTAGGTTTTT 17 59602939 . G GT . PASS IC=3;IHP=2;NT=ref;QSI=53;QSI_NT=53;RC=2;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:32,32:0,0:0,0:30.7:0.00:0.00 43:43:23,23:17,18:3,3:39.38:0.00:0.00 + TTTTGGTTGAG 18 11156 . GA G . PASS IC=1;IHP=3;NT=ref;QSI=31;QSI_NT=31;RC=2;RU=A;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 26:26:27,27:0,0:0,0:28.21:0.00:0.00 27:27:16,17:8,8:4,4:25.78:0.00:0.00 + AACCCGAACCC 18 18512102 . G GA . PASS IC=5;IHP=4;NT=ref;QSI=43;QSI_NT=43;RC=4;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 25:25:23,23:0,0:1,1:24.54:0.00:0.00 76:76:28,28:21,72:27,10:74.39:3.70:0.00 + ACGGTGAAAAG 18 28221227 . AC A . PASS IC=3;IHP=5;NT=ref;QSI=39;QSI_NT=39;RC=4;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:28,28:0,0:0,0:28.22:0.30:0.00 38:38:21,21:12,12:6,6:39.43:0.00:0.00 + CCTTCACCCCA 19 3349885 . GC G . PASS IC=1;IHP=2;NT=ref;QSI=61;QSI_NT=61;RC=2;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 30:30:29,30:0,0:1,0:27.9:0.19:0.00 31:31:10,10:15,15:4,4:31.33:0.00:0.00 + CCTTGGCCTAG 19 24618958 . T TG . PASS IC=1;IHP=5;NT=ref;QSI=24;QSI_NT=24;RC=0;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 51:51:49,55:0,0:0,0:46.25:0.44:0.00 35:35:29,29:4,6:0,0:46.56:0.00:0.00 + TCATATAAAAT 19 40571868 . GT G . PASS IC=4;IHP=5;NT=ref;QSI=37;QSI_NT=37;RC=5;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 34:34:34,34:0,0:0,0:34.98:0.36:0.00 30:30:16,16:8,8:3,3:28.17:0.00:0.00 + GGCTAGTTTTT 19 48423423 . A AACAACAACG . PASS IC=1;IHP=4;NT=ref;QSI=27;QSI_NT=27;RC=0;RU=ACAACAACG;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 42:42:42,46:0,0:1,1:44.64:0.01:0.00 43:43:31,37:8,9:1,2:38.03:0.07:0.00 + ACAACAATAAC 19 48423448 . ACAG A . PASS IC=0;IHP=4;NT=ref;QSI=69;QSI_NT=69;RC=1;RU=CAG;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 47:47:52,59:0,0:1,1:46.68:0.02:0.00 39:39:22,27:15,15:2,3:35.91:0.07:0.00 + CAACAACAGCA 19 55978582 . AG A . PASS IC=1;IHP=3;NT=ref;QSI=78;QSI_NT=77;RC=2;RU=G;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:32,32:0,0:0,0:31.69:0.00:0.00 64:64:16,19:34,34:13,12:58.85:0.00:0.00 + ATTACAGGCGT 20 9555698 . TGC T . PASS IC=0;IHP=4;NT=ref;QSI=44;QSI_NT=44;RC=1;RU=GC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 46:46:47,47:0,0:0,0:49.01:0.13:0.00 56:56:33,33:12,12:7,7:54.87:0.00:0.00 10 - CCDS13107.1xxxPAK7 CTTCCCGCATC 20 22243466 . AGACCCTGGCTGTTCACTAACTGATGTGTAT A . PASS IC=0;IHP=2;NT=ref;QSI=41;QSI_NT=41;RC=1;RU=GACCCTGGCTGTTCACTAACTGATGTGTAT;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 68:68:82,83:0,0:0,0:71.28:0.00:0.00 56:56:49,49:8,8:16,16:49.74:0.01:0.00 + GCTGCAGACCC 20 25240000 . TG T . PASS IC=2;IHP=5;NT=ref;QSI=46;QSI_NT=46;RC=3;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 49:49:51,51:0,0:0,0:52.18:0.11:0.00 40:40:28,28:11,12:1,1:44.15:0.00:0.00 10 + CCDS13171.1xxxPYGB GCTTCTGGGTG 20 26078130 . AG A . PASS IC=0;IHP=2;NT=ref;QSI=21;QSI_NT=21;RC=1;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 40:40:40,40:0,0:0,0:38.83:0.04:0.00 38:38:30,31:5,6:4,4:39.24:0.00:0.00 + TCAGCAGCTCT 20 34211238 . CT C . PASS IC=4;IHP=5;NT=ref;QSI=45;QSI_NT=45;RC=5;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 51:51:51,51:0,0:0,0:48.25:0.00:0.00 49:49:34,34:12,12:3,4:51.85:0.00:0.00 + GATAACTTTTT 20 37072268 . AT A . PASS IC=1;IHP=8;NT=ref;QSI=47;QSI_NT=47;RC=2;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 43:43:42,44:0,0:1,1:42.21:0.09:0.00 40:40:22,22:11,11:7,7:36.8:0.00:0.00 + ATAAAATTAGG 20 39811823 . GTA G . PASS IC=7;IHP=2;NT=ref;QSI=21;QSI_NT=21;RC=8;RU=TA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 46:46:40,40:0,0:6,6:44.16:0.00:0.00 55:55:34,34:6,6:15,15:57.3:0.00:0.00 + TGTGTGTATAT 20 41779113 . TG T . PASS IC=1;IHP=13;NT=ref;QSI=36;QSI_NT=36;RC=2;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 42:42:43,44:0,0:0,0:45.53:0.02:0.00 46:46:30,30:10,11:6,6:45.3:0.00:0.00 10 - CCDS42874.1xxxPTPRT AATCTCCAAAA 20 49108407 . GAGTGAAC G . PASS IC=0;IHP=3;NT=ref;QSI=20;QSI_NT=20;RC=1;RU=AGTGAAC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 42:42:43,43:0,0:0,0:43.21:0.00:0.00 38:38:30,30:4,4:8,8:37.79:0.00:0.00 + TTCAGGAGTGA 20 52836505 . AG A . PASS IC=0;IHP=5;NT=ref;QSI=42;QSI_NT=42;RC=1;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 63:63:63,63:0,0:0,0:56.97:0.02:0.00 45:45:35,35:10,10:0,0:45.54:0.00:0.00 + ACAAAAGACAA 20 54060164 . AGGAGTGGGGCCT A . PASS IC=0;IHP=3;NT=ref;QSI=30;QSI_NT=30;RC=1;RU=GGAGTGGGGCCT;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 64:64:63,63:0,0:3,3:61.39:0.00:0.00 52:52:43,44:7,7:6,6:49.03:0.00:0.00 + ATCCCAGGAGT 20 60774504 . ATC A . PASS IC=0;IHP=2;NT=ref;QSI=57;QSI_NT=57;RC=1;RU=TC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 41:41:41,41:0,0:0,0:41.1:0.00:0.00 42:42:21,21:14,14:4,4:40.93:0.00:0.00 10 + CCDS13492.1xxxMTG2 ACACCATCCTG 21 10712487 . GT G . PASS IC=4;IHP=6;NT=ref;QSI=37;QSI_NT=37;RC=5;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 69:69:67,67:0,0:2,2:65.98:0.71:0.00 78:78:54,54:11,11:11,12:77.68:0.18:0.00 + GTGTAGTTTTT 21 11117654 . CATAG C . PASS IC=1;IHP=2;NT=ref;QSI=42;QSI_NT=42;RC=2;RU=ATAG;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 89:89:88,90:0,0:2,2:76.91:0.15:0.00 70:70:54,56:9,11:9,9:55.17:0.03:0.00 + AGAGACATAGA 21 11117695 . T TGATA . PASS IC=2;IHP=1;NT=ref;QSI=35;QSI_NT=35;RC=1;RU=GATA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 71:71:65,66:0,0:5,5:74.82:0.03:0.00 42:42:28,29:6,7:8,8:53.26:0.03:0.00 + ATAGATGATAA 21 24861315 . C CTA . PASS IC=5;IHP=2;NT=ref;QSI=41;QSI_NT=41;RC=4;RU=TA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 31:31:29,29:0,0:2,2:33.58:0.02:0.00 38:38:17,17:11,11:10,10:37.03:0.00:0.00 + CCCTGCTATAT 21 25485194 . C CT . PASS IC=6;IHP=5;NT=ref;QSI=27;QSI_NT=27;RC=5;RU=T;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:27,27:0,0:1,1:27.78:0.79:0.00 27:27:15,17:7,7:4,2:31.21:0.00:0.00 + TCTTACTTTTT 21 26774706 . TC T . PASS IC=1;IHP=3;NT=ref;QSI=43;QSI_NT=43;RC=2;RU=C;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:32,32:0,0:0,0:32.12:0.00:0.00 29:29:17,18:11,11:1,1:29.39:0.00:0.00 + CAGCTTCCACA 21 30911387 . TA T . PASS IC=4;IHP=6;NT=ref;QSI=74;QSI_NT=73;RC=5;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 38:38:34,34:0,0:2,2:40.67:0.01:0.00 55:55:24,24:28,28:3,3:55.75:0.00:0.00 10 - CCDS33530.1xxxGRIK1 AGTTTTTATGT 21 33672986 . ATG A . PASS IC=1;IHP=2;NT=ref;QSI=21;QSI_NT=21;RC=2;RU=TG;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 34:34:28,33:0,0:6,1:30.3:6.81:0.00 53:53:35,41:9,9:9,3:46.61:4.80:0.00 10 + CCDS13613.1xxxMRAP GTCGGATGTGT 21 33673003 . TGTCAGGGGC T . PASS IC=0;IHP=5;NT=ref;QSI=21;QSI_NT=21;RC=1;RU=GTCAGGGGC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 36:36:18,23:0,0:18,13:30.02:6.45:0.00 60:60:21,28:9,9:34,27:49.9:4.66:0.00 10 + CCDS13613.1xxxMRAP TCCTATGTCAG 21 44712375 . A AG . PASS IC=2;IHP=2;NT=ref;QSI=23;QSI_NT=23;RC=1;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 51:51:50,52:0,0:1,1:42.87:0.00:0.00 57:57:45,47:6,6:6,6:49.91:0.51:0.00 + GGCCGAGACAG 22 18949375 . G GTT . PASS IC=2;IHP=2;NT=ref;QSI=23;QSI_NT=23;RC=0;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:26,32:0,0:1,1:28.06:1.01:0.00 28:28:18,18:6,6:4,4:23.58:0.05:0.00 + TTCCAGCTCAC 22 18949383 . CCTCT C . PASS IC=0;IHP=4;NT=ref;QSI=23;QSI_NT=23;RC=2;RU=CT;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 27:27:29,35:0,0:1,1:28.54:0.79:0.00 27:27:21,21:6,6:2,2:24.08:0.05:0.00 + CACTCCCTCTA 22 33341255 . AC A . PASS IC=0;IHP=2;NT=ref;QSI=50;QSI_NT=50;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:32,32:0,0:0,0:33.55:0.00:0.00 31:31:15,15:12,14:3,3:30.55:0.00:0.00 10 - CCDS13908.1xxxSYN3 GGTAGCGTGAT 22 39300310 . T TG . PASS IC=2;IHP=13;NT=ref;QSI=32;QSI_NT=32;RC=1;RU=G;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:31,32:0,0:1,1:32.6:0.00:0.00 37:37:20,22:8,8:11,9:36.63:0.00:0.00 + TTTTTTGAGAT 22 45500298 . GCCA G . PASS IC=0;IHP=4;NT=ref;QSI=27;QSI_NT=27;RC=1;RU=CCA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 26:26:26,27:0,0:0,0:25.25:0.00:0.00 31:31:20,20:8,8:4,4:31.24:0.00:0.00 + ATCAGGCCACC 22 47188674 . TGTGGGA T . PASS IC=0;IHP=4;NT=ref;QSI=21;QSI_NT=21;RC=1;RU=GTGGGA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 37:37:38,38:0,0:0,0:37.61:0.36:0.00 26:26:21,21:4,4:4,4:29.32:0.00:0.00 10 + CCDS14078.1xxxTBC1D22A GCGGATGTGGG X 11534047 . A AC . PASS IC=7;IHP=8;NT=ref;QSI=51;QSI_NT=51;RC=6;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 26:26:24,24:0,0:2,2:26.27:0.01:0.00 26:26:8,8:15,15:3,3:26.04:0.00:0.00 10 - CCDS14140.1xxxARHGAP6 GGGGGGTGGTC X 12534034 . CTCT C . PASS IC=1;IHP=4;NT=ref;QSI=75;QSI_NT=74;RC=2;RU=TCT;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:34,34:0,0:2,2:34.35:0.01:0.00 28:28:8,8:15,16:4,4:27.16:0.00:0.00 10 + CCDS35201.1xxxFRMPD4 GTTAGCTCTTC X 22528506 . GC G . PASS IC=0;IHP=3;NT=ref;QSI=78;QSI_NT=77;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 36:36:35,35:0,0:0,0:36.54:0.01:0.00 36:36:15,15:21,21:0,0:35.35:0.00:0.00 + CATTTGCTTAG X 23122939 . AT A . PASS IC=2;IHP=5;NT=ref;QSI=54;QSI_NT=54;RC=3;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 36:36:35,36:0,0:1,1:36.12:0.60:0.00 25:25:13,13:11,11:2,2:29.4:0.00:0.00 + AAACAATTTAA X 25775896 . CA C . PASS IC=3;IHP=5;NT=ref;QSI=39;QSI_NT=39;RC=4;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:26,26:0,0:2,2:29.52:0.00:0.00 35:35:18,19:12,12:5,4:35.27:0.00:0.00 + AGAGACAAAAG X 30596434 . C CA . PASS IC=7;IHP=7;NT=ref;QSI=55;QSI_NT=55;RC=6;RU=A;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 39:39:33,33:0,0:6,6:39.47:1.57:0.00 36:36:17,17:14,14:5,5:32.23:0.00:0.00 + AAATACAAAAA X 32497764 . C CAT . PASS IC=6;IHP=2;NT=ref;QSI=49;QSI_NT=49;RC=5;RU=AT;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:27,27:0,0:1,1:29.01:0.30:0.00 25:25:12,12:12,12:1,1:25.38:0.00:0.00 10 - CCDS55395.1xxxDMD ATATATGCAAT X 36329912 . TC T . PASS IC=0;IHP=2;NT=ref;QSI=62;QSI_NT=62;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 29:29:29,29:0,0:0,0:27.63:0.00:0.00 53:53:20,20:27,27:5,5:46.57:0.00:0.00 10 + CCDS55396.1xxxCXorf30 ATCAATCTGAT X 38371700 . CT C . PASS IC=6;IHP=10;NT=ref;QSI=65;QSI_NT=65;RC=7;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 35:35:33,33:0,0:2,2:32.69:0.00:0.00 34:34:14,14:16,16:3,3:33.08:0.00:0.00 + TATTTCTTTTT X 51658172 . AC A . PASS IC=0;IHP=4;NT=ref;QSI=82;QSI_NT=80;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 36:36:36,36:0,0:0,0:32.39:0.01:0.00 31:31:10,10:17,17:4,4:29.88:0.00:0.00 + CAAATACTTCT X 77278302 . A AC . PASS IC=2;IHP=3;NT=ref;QSI=56;QSI_NT=56;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 29:29:29,29:0,0:0,0:29.92:0.20:0.00 42:42:19,19:18,19:5,5:47.52:0.00:0.00 10 + CCDS35339.1xxxATP7A GAGCCACTGTG X 80010437 . G GT . PASS IC=1;IHP=4;NT=ref;QSI=33;QSI_NT=33;RC=0;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 26:26:26,26:0,0:0,0:28.53:0.00:0.00 27:27:14,14:8,8:1,1:30.57:0.00:0.00 10 - CCDS14447.1xxxBRWD3 CCTCCGCCTTC X 90724914 . AC A . PASS IC=3;IHP=4;NT=ref;QSI=51;QSI_NT=51;RC=4;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:31,31:0,0:1,1:34.76:0.00:0.00 41:41:20,20:15,15:7,7:36.98:0.00:0.00 + CTGGAACCCCA X 98928028 . GACC G . PASS IC=0;IHP=2;NT=ref;QSI=84;QSI_NT=81;RC=1;RU=ACC;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 33:33:34,34:0,0:0,0:33.72:0.00:0.00 25:25:7,7:17,17:1,1:24.77:0.00:0.00 + GCTGAGACCAG X 126383207 . A AT . PASS IC=9;IHP=8;NT=ref;QSI=43;QSI_NT=43;RC=8;RU=T;SGT=ref->het;SOMATIC;TQSI=2;TQSI_NT=2 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 26:26:24,24:0,0:2,2:26.56:0.01:0.00 35:35:13,15:14,14:7,6:37.17:0.00:0.00 + TTGTCATTTTT X 127041881 . AC A . PASS IC=4;IHP=5;NT=ref;QSI=41;QSI_NT=41;RC=5;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 30:30:28,28:0,0:2,2:29.17:0.34:0.00 28:28:14,14:10,10:3,3:31.19:0.00:0.00 + TTTGTACCCCC X 128189670 . G GT . PASS IC=1;IHP=5;NT=ref;QSI=33;QSI_NT=33;RC=0;RU=T;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 26:26:26,26:0,0:0,0:26.6:0.00:0.00 28:28:17,17:9,9:3,3:29.43:0.00:0.00 + TTTGGGGTGTC X 147466179 . TAAGGTA T . PASS IC=0;IHP=4;NT=ref;QSI=22;QSI_NT=22;RC=1;RU=AAGGTA;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 28:28:29,30:0,0:1,0:29.03:0.86:0.00 25:25:17,17:5,5:2,2:22.68:0.00:0.00 + TCAGGTAAGGT X 152618060 . TC T . PASS IC=0;IHP=4;NT=ref;QSI=35;QSI_NT=35;RC=1;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 32:32:32,32:0,0:0,0:31.2:0.91:0.00 40:40:23,23:10,10:6,6:38.97:0.00:0.00 + CTGTCTCTTTA X 153230972 . TC T . PASS IC=3;IHP=4;NT=ref;QSI=58;QSI_NT=58;RC=4;RU=C;SGT=ref->het;SOMATIC;TQSI=1;TQSI_NT=1 DP:DP2:TAR:TIR:TOR:DP50:FDP50:SUBDP50 30:30:30,30:0,0:1,1:30.77:0.51:0.00 47:47:24,24:20,22:2,0:44.5:0.00:0.00 10 - CCDS44020.1xxxHCFC1 TTCGGGGAAGC