@prefix : <https://www.github.com/superphy#> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix doid: <http://purl.obolibrary.org/obo/DOID_> .
@prefix envo: <http://purl.obolibrary.org/obo/ENVO_> .
@prefix faldo: <http://biohackathon.org/resource/faldo#> .
@prefix g: <http://www.biointerchange.org/gfvo#> .
@prefix ge: <http://purl.obolibrary.org/obo/GENEPIO_> .
@prefix ncbi: <http://purl.obolibrary.org/obo/NCBI_Taxon_> .
@prefix obi: <http://purl.obolibrary.org/obo/OBI_> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix so: <http://purl.obolibrary.org/obo/SO_> .
@prefix subt: <https://www.github.com/superphy/typing#> .
@prefix typon: <http://purl.phyloviz.net/ontology/typon#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

faldo:Begin rdfs:subClassOf faldo:Position .

faldo:End rdfs:subClassOf faldo:Position .

faldo:ForwardStrandPosition rdfs:subClassOf faldo:ExactPosition .

faldo:Reference a owl:Class ;
    rdf:comment "a g:Contig that is referenced in some :Marker" ;
    rdfs:subClassOf g:Contig .

faldo:ReverseStrandPosition rdfs:subClassOf faldo:ExactPosition .

faldo:position a owl:DatatypeProperty ;
    rdfs:comment "the numerical location of a position" ;
    rdfs:domain faldo:Position .

<http://purl.obolibrary.org/obo/GENEPIO_0000024> dc:description "Upload_Date" .

<http://purl.obolibrary.org/obo/GENEPIO_0001076> a owl:DatatypeProperty ;
    dc:description "O-Type" ;
    rdfs:comment "o-antigen" ;
    rdfs:domain :spfyId .

<http://purl.obolibrary.org/obo/GENEPIO_0001077> a owl:DatatypeProperty ;
    dc:description "H-Type" ;
    rdfs:comment "h-antigen" ;
    rdfs:domain :spfyId .

<http://purl.obolibrary.org/obo/GENEPIO_0001567> a owl:DatatypeProperty ;
    rdfs:comment "subject species" ;
    rdfs:domain :spfyId .

<http://purl.obolibrary.org/obo/GENEPIO_0001684> a owl:DatatypeProperty ;
    rdfs:comment "k-antigen" ;
    rdfs:domain :spfyId .

dc:date a owl:DatatypeProperty ;
    rdfs:comment "submission date" ;
    rdfs:domain g:Genome .

dc:description a owl:DatatypeProperty ;
    rdfs:comment "class descriptor" ;
    rdfs:domain g:Genome .

g:DNASequence a owl:DatatypeProperty ;
    rdfs:comment "a dna sequence" ;
    rdfs:domain g:Contig .

g:Description a owl:DatatypeProperty ;
    rdfs:comment "record.description" ;
    rdfs:domain g:Contig .

g:Identifier a owl:DatatypeProperty ;
    rdfs:comment "accession number ie. record.id" ;
    rdfs:domain g:Contig .

: a owl:Ontology ;
    dc:license <https://www.apache.org/licenses/LICENSE-2.0> .

:AntimicrobialResistanceGene dc:description "AMR_Gene" ;
    rdfs:subClassOf :Marker .

:PanGenomeRegion rdfs:subClassOf :Marker .

:VirulenceFactor dc:description "Virulence_Factor" ;
    rdfs:subClassOf :Marker .

:hasPart_SO__gfv a owl:ObjectProperty,
        owl:TransitiveProperty ;
    rdfs:domain <http://purl.obolibrary.org/obo/SO_0001462> ;
    rdfs:range g:Contig .

:hasPart_fal_fal a owl:ObjectProperty,
        owl:TransitiveProperty ;
    rdfs:domain faldo:Region ;
    rdfs:range faldo:Position .

:hasPart_fal_sup a owl:ObjectProperty,
        owl:TransitiveProperty ;
    rdfs:domain faldo:Region ;
    rdfs:range :Marker .

:hasPart_gfv_SO_ a owl:ObjectProperty,
        owl:TransitiveProperty ;
    rdfs:domain g:Genome ;
    rdfs:range <http://purl.obolibrary.org/obo/SO_0001462> .

:hasPart_gfv_fal a owl:ObjectProperty,
        owl:TransitiveProperty ;
    rdfs:domain g:Contig ;
    rdfs:range faldo:Region .

:hasPart_sup_gfv a owl:ObjectProperty,
        owl:TransitiveProperty ;
    rdfs:domain :spfyId ;
    rdfs:range g:Genome .

:isFoundIn_SO__gfv a owl:TransitiveProperty ;
    rdfs:domain <http://purl.obolibrary.org/obo/SO_0001462> ;
    rdfs:range g:Genome .

:isFoundIn_fal_fal a owl:TransitiveProperty ;
    rdfs:domain faldo:Position ;
    rdfs:range faldo:Region .

:isFoundIn_fal_gfv a owl:TransitiveProperty ;
    rdfs:domain faldo:Region ;
    rdfs:range g:Contig .

:isFoundIn_gfv_SO_ a owl:TransitiveProperty ;
    rdfs:domain g:Contig ;
    rdfs:range <http://purl.obolibrary.org/obo/SO_0001462> .

:isFoundIn_gfv_sup a owl:TransitiveProperty ;
    rdfs:domain g:Genome ;
    rdfs:range :spfyId .

:isFoundIn_sup_fal a owl:TransitiveProperty ;
    rdfs:domain :Marker ;
    rdfs:range faldo:Region .

faldo:ExactPosition rdfs:subClassOf faldo:Position .

<http://purl.obolibrary.org/obo/SO_0001462> a owl:Class ;
    dc:description "Bag_of_Contigs" ;
    rdfs:comment "bag of contigs" .

:Marker a owl:Class ;
    dc:description "Any_Marker" .

faldo:Position a owl:Class .

faldo:Region a owl:Class ;
    rdf:comment "a region containing the start and the end positions" .

g:Genome a owl:Class ;
    rdfs:comment "genome instance" .

:spfyId a owl:Class ;
    dc:description "SpfyId" ;
    rdfs:comment ":spfyid" .

g:Contig a owl:Class ;
    rdfs:comment "a contig" .