---
title: "Conferences"
author: "Author: Daniela Cassol (danielac@ucr.edu) and Thomas Girke (thomas.girke@ucr.edu)"
date: "Last update: 04 December, 2021"
type: docs
weight: 4
exclude_search: false
---
## BioC2021
+ [BioC2021{blk}](https://bioc2021.bioconductor.org/)
+ systemPipe: Workflow and Visualization Toolkit - Workshop
+ [Workshop Website{blk}](https://systempipe.org/systemPipeWorkshop2021/)
+ [Bioc2021 Workshop{blk}](http://app.orchestra.cancerdatasci.org/1)
+ [GitHub Material{blk}](https://github.com/systemPipeR/systemPipeWorkshop2021)
## BioC2020
+ [BioC2020{blk}](https://bioc2020.bioconductor.org/)
+ `systemPipeShiny`: An Interactive Framework for Workflow Management and Visualization - [F1000{blk}](https://f1000research.com/posters/9-749)
+ `systemPipeR`: a generic workflow environment federates R with command-line software - [F1000{blk}](https://f1000research.com/posters/9-747)
## BioC2019
+ [BioC2019{blk}](https://bioc2019.bioconductor.org/)
+ `systemPipeR's` New CWL Command-line Interface - Workshop
+ [GitHub Material{blk}](https://github.com/dcassol/BioC2019_Workshop/blob/master/workshop-sytemPipeR.md)
[[ View Slides in Separate Browser Tab ]{blk}](https://systempipe.org/presentations/Bioc2019.html#/)
## Bioc2018
+ [BioC2018{blk}](https://bioc2018.bioconductor.org/)
+ [Poster Bioc2018{blk}](https://systempipe.org/posters/Poster_BioC2018.pdf)
## Bioc2016
+ [BioC2016{blk}](https://bioc2019.bioconductor.org/)
[[ View Slides in Separate Browser Tab ]{blk}](https://docs.google.com/presentation/d/175aup31LvnbIJUAvEEoSkpGsKgtBJ2RpQYd0Gs23dLo/embed?start=false&loop=false&delayms=60000&slide=id.p)
### Material for Bioc2016 Tutorial
+ [Intro Slide Show{blk}](https://docs.google.com/presentation/d/175aup31LvnbIJUAvEEoSkpGsKgtBJ2RpQYd0Gs23dLo/embed?start=false&loop=false&delayms=60000)
+ Tutorial Material
+ Introduction to `systemPipeR`
+ [HTML{blk}](https://htmlpreview.github.io/?https://raw.githubusercontent.com/tgirke/systemPipeRdata/master_github_deprecated/vignettes/systemPipeR_Intro.html)
+ [PDF{blk}](https://raw.githubusercontent.com/tgirke/systemPipeRdata/master_github_deprecated/vignettes/systemPipeR_Intro.pdf)
+ [Rmd{blk}](https://raw.githubusercontent.com/tgirke/systemPipeRdata/master_github_deprecated/vignettes/systemPipeR_Intro.Rmd)
+ Demo Workflow: RIBO-Seq
+ [HTML{blk}](https://htmlpreview.github.io/?https://raw.githubusercontent.com/tgirke/systemPipeRdata/master_github_deprecated/inst/extdata/workflows/riboseq/systemPipeRIBOseq.html)
+ [PDF{blk}](https://raw.githubusercontent.com/tgirke/systemPipeRdata/master_github_deprecated/inst/extdata/workflows/riboseq/systemPipeRIBOseq.pdf)
+ [Rmd{blk}](https://raw.githubusercontent.com/tgirke/systemPipeRdata/master_github_deprecated/inst/extdata/workflows/riboseq/systemPipeRIBOseq.Rmd)
### Installation
Please install _systemPipeRdata_ from this GitHub repository as shown below. This package provides the data and `Rmd` files for the tutorial.
Its parent package _systemPipeR_ is a dependency and it should install along with all its own dependencies automatically. If it doesn't then please also install the package, using the `BiocManager::install` command given below.
```
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("tgirke/systemPipeRdata", build_vignettes=TRUE, dependencies=TRUE)
```
## BioC2015
+ [BioC2015{blk}](https://bioconductor.org/help/course-materials/2015/BioC2015/)
[[ View Slides in Separate Browser Tab ]{blk}](https://systempipe.org/presentations/systemPipeRslides.html#1)