{
 "metadata": {},
 "nbformat": 3,
 "nbformat_minor": 0,
 "worksheets": [
  {
   "cells": [
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "from architecture_further_formulas import *"
     ],
     "language": "python",
     "metadata": {},
     "outputs": []
    },
    {
     "cell_type": "markdown",
     "metadata": {},
     "source": [
      "<a id='timePeriodAndRefractoryCalcs'></a><div style='font-size:1.7em;text-decoration:underline;font-weight:bold'>timePeriodAndRefractoryCalcs</div>"
     ]
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "def timePeriodAndRefractoryCalcs(timeAndRefrac):\n",
      "\ttimeAndRefrac.time = timeAndRefrac.time + timeAndRefrac.timeStepInterval\n",
      "\ttimeAndRefrac.refractoryPointCounter = timeAndRefrac.refractoryPointCounter + timeAndRefrac.timeStepInterval\t\n",
      "\ttT = (Decimal(format(timeAndRefrac.time, '.1f')))\n",
      "\tsIU = (Decimal(format(timeAndRefrac.spikeIntervalUnformatted, '.1f')))\n",
      "\ttimeAndRefrac.spikeIntervalCounter = int(tT/sIU)\n",
      "\n",
      "\t# if statement below corrects for offset of spiketimes starting at .1 sec.\n",
      "\tif timeAndRefrac.time >= .1:\n",
      "\t\ttimeAndRefrac.neuronIndexCounter = timeAndRefrac.neuronIndexCounter + timeAndRefrac.timeStepInterval\n",
      "\n",
      "\ttimeAndRefrac.refractoryPointSwitch = False\n",
      "\tif timeAndRefrac.refractoryPointCounter >= timeAndRefrac.spikeIntervalUnformatted:\n",
      "\t\ttimeAndRefrac.refractoryPointCounter = 0.000\n",
      "\t\ttimeAndRefrac.refractoryPointSwitch = True\n",
      "\t\ttimeAndRefrac.lastSpikeInterval = timeAndRefrac.time-timeAndRefrac.timeStepInterval\n",
      "\n",
      "\treturn timeAndRefrac"
     ],
     "language": "python",
     "metadata": {},
     "outputs": []
    },
    {
     "cell_type": "markdown",
     "metadata": {},
     "source": [
      "<a id='checkForResets'></a><div style='font-size:1.7em;text-decoration:underline;font-weight:bold'>checkForResets</div>"
     ]
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "def checkForResets(neuronIndex, ADDSObj, dendObj, somaDirectObj, timeAndRefrac):\n",
      "\tif ADDSObj.v2[neuronIndex] == 10*mV:\n",
      "\t\tADDSObj.v2[neuronIndex] = 0*mV\t\t\t\t\t\t\n",
      "\n",
      "\telif ADDSObj.v[neuronIndex] != -0.002 * mV:\n",
      "\t\tADDSObj.v2[neuronIndex] = ADDSObj.v[neuronIndex]\n",
      "\n",
      "\t#if somaDirectObj.v2[neuronIndex] == 10*mV:\n",
      "\t#\tsomaDirectObj.v2[neuronIndex] = 0*mV\t\n",
      "\n",
      "\tif (timeAndRefrac.beginRefrac[neuronIndex] == 1*mV) and (timeAndRefrac.relRefracTimeActivated[neuronIndex] == False):\n",
      "\t\ttimeAndRefrac.beginRefrac[neuronIndex] = 0*mV\n",
      "\t\ttimeAndRefrac.absRefracTime[neuronIndex] = timeAndRefrac.time\n",
      "\t\ttimeAndRefrac.relRefracTime[neuronIndex] = timeAndRefrac.time\n",
      "\t\ttimeAndRefrac.absRefracTimeActivated[neuronIndex] = True\n",
      "\t\ttimeAndRefrac.relRefracTimeActivated[neuronIndex] = True\n",
      "\t# Absolute refrac\n",
      "\tif timeAndRefrac.absRefracTimeActivated[neuronIndex] == True:\n",
      "\t\tif timeAndRefrac.time >= (timeAndRefrac.absRefracTime[neuronIndex] + timeAndRefrac.absRefracTimeDuration):\n",
      "\t\t\ttimeAndRefrac.absRefracTimeActivated[neuronIndex] = False\n",
      "\t# Relative refrac\n",
      "\tif timeAndRefrac.relRefracTimeActivated[neuronIndex] == True:\n",
      "\t\tif timeAndRefrac.time >= (timeAndRefrac.relRefracTime[neuronIndex] + timeAndRefrac.relRefracTimeDuration):\n",
      "\t\t\ttimeAndRefrac.relRefracTimeActivated[neuronIndex] = False\n",
      "\n",
      "\treturn ADDSObj.v2, somaDirectObj.v2, timeAndRefrac"
     ],
     "language": "python",
     "metadata": {},
     "outputs": []
    }
   ],
   "metadata": {}
  }
 ]
}