# adklakedata
* Version: 0.6.1
* GitHub: https://github.com/lawinslow/adklakedata
* Source code: https://github.com/cran/adklakedata
* Date/Publication: 2018-02-16 19:08:16 UTC
* Number of recursive dependencies: 61
Run `revdepcheck::cloud_details(, "adklakedata")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘adklakedata-Ex.R’ failed
The error most likely occurred in:
> ### Name: adk_lake_shapes
> ### Title: Return path to Lake Polygons Shapefile
> ### Aliases: adk_lake_shapes
>
> ### ** Examples
>
> library(sf)
Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.4.0; sf_use_s2() is TRUE
> bl = read_sf(adklakedata::adk_shape())
Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, :
package tibble not available: install first?
Calls: read_sf ... st_read -> st_read.character -> process_cpl_read_ogr
Execution halted
```
## In both
* checking LazyData ... NOTE
```
'LazyData' is specified without a 'data' directory
```
# adsoRptionCMF
* Version: 0.1.0
* GitHub: NA
* Source code: https://github.com/cran/adsoRptionCMF
* Date/Publication: 2025-06-05 10:00:05 UTC
* Number of recursive dependencies: 46
Run `revdepcheck::cloud_details(, "adsoRptionCMF")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘adsoRptionCMF-Ex.R’ failed
The error most likely occurred in:
> ### Name: fit_freundlichLM
> ### Title: Freundlich Isotherm Linear Analysis
> ### Aliases: fit_freundlichLM
>
> ### ** Examples
>
> Ce <- c(0.01353, 0.04648, 0.13239, 0.27714, 0.41600, 0.63607, 0.80435, 1.10327, 1.58223)
...
17. │ └─l$compute_geom_2(d, theme = plot@theme)
18. │ └─ggplot2 (local) compute_geom_2(..., self = self)
19. │ └─self$geom$use_defaults(...)
20. │ └─ggplot2 (local) use_defaults(..., self = self)
21. │ └─ggplot2:::check_aesthetics(new_params, nrow(data))
22. │ └─vctrs::list_sizes(x)
23. └─vctrs:::stop_scalar_type(``(``), "x$label", ``)
24. └─vctrs:::stop_vctrs(...)
25. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
Execution halted
```
# adw
* Version: 0.4.0
* GitHub: https://github.com/PanfengZhang/adw
* Source code: https://github.com/cran/adw
* Date/Publication: 2024-04-15 19:10:16 UTC
* Number of recursive dependencies: 59
Run `revdepcheck::cloud_details(, "adw")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘adw-Ex.R’ failed
The error most likely occurred in:
> ### Name: adw
> ### Title: Angular Distance Weighting Interpolation.
> ### Aliases: adw
>
> ### ** Examples
>
> set.seed(2)
...
4 111.75 31.25 -0.47570806
5 112.25 31.25 -1.57521787
6 112.75 31.25 -1.10541492
>
> # example 2
> hmap <- cnmap::getMap(code = "410000") |> sf::st_make_valid() # return a 'sf' object.
Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, :
package tibble not available: install first?
Calls: ... st_read -> st_read.character -> process_cpl_read_ogr
Execution halted
```
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘Introduction.Rmd’ using rmarkdown
Quitting from Introduction.Rmd:47-74 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in `process_cpl_read_ogr()`:
! package tibble not available: install first?
---
Backtrace:
...
Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
package tibble not available: install first?
--- failed re-building ‘Introduction.Rmd’
SUMMARY: processing the following file failed:
‘Introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
```
# afex
* Version: 1.4-1
* GitHub: https://github.com/singmann/afex
* Source code: https://github.com/cran/afex
* Date/Publication: 2024-09-01 16:10:02 UTC
* Number of recursive dependencies: 237
Run `revdepcheck::cloud_details(, "afex")` for more info
## Newly broken
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘afex_analysing_accuracy_data.Rmd’ using rmarkdown
```
# AgroR
* Version: 1.3.6
* GitHub: NA
* Source code: https://github.com/cran/AgroR
* Date/Publication: 2024-04-24 02:20:18 UTC
* Number of recursive dependencies: 117
Run `revdepcheck::cloud_details(, "AgroR")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘AgroR-Ex.R’ failed
The error most likely occurred in:
> ### Name: TBARPLOT.reverse
> ### Title: Graph: Reverse graph of DICT, DBCT and DQL output when
> ### geom="bar"
> ### Aliases: TBARPLOT.reverse
> ### Keywords: Experimental
>
> ### ** Examples
...
3 7.822709e-05 0.59104221 0.46541352 0.3244232 4.189412
4 1.496061e-02 0.09984009 0.09849058 0.1332682 6.462590
5 1.757687e-04 0.67552390 0.42726077 0.3008609 2.566743
6 1.138255e-04 0.70461554 0.37578092 0.6357482 2.093636
> TBARPLOT.reverse(a)
Warning in geom_text(aes(label = letra, y = media + desvio + sup), position = position_dodge(0.9), :
Ignoring empty aesthetics: `size` and `family`.
Error in if (colo == "gray") { : argument is of length zero
Calls: TBARPLOT.reverse
Execution halted
```
# AgroReg
* Version: 1.2.10
* GitHub: NA
* Source code: https://github.com/cran/AgroReg
* Date/Publication: 2024-01-16 12:50:16 UTC
* Number of recursive dependencies: 115
Run `revdepcheck::cloud_details(, "AgroReg")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘AgroReg-Ex.R’ failed
The error most likely occurred in:
> ### Name: adjust_scale
> ### Title: Utils: Adjust y and x scale
> ### Aliases: adjust_scale
>
> ### ** Examples
>
> library(AgroReg)
...
> data("aristolochia")
> attach(aristolochia)
> a=LM(trat,resp)
> b=LL(trat,resp,npar = "LL.3")
> a=plot_arrange(list(a,b),gray = TRUE)
Error in equation[[i]] <- plots[[i]][[3]]$plot$s :
replacement has length zero
Calls: plot_arrange
Execution halted
```
# alookr
* Version: 0.3.9
* GitHub: https://github.com/choonghyunryu/alookr
* Source code: https://github.com/cran/alookr
* Date/Publication: 2024-02-11 07:30:02 UTC
* Number of recursive dependencies: 168
Run `revdepcheck::cloud_details(, "alookr")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘alookr-Ex.R’ failed
The error most likely occurred in:
> ### Name: compare_plot
> ### Title: Comparison plot of train set and test set
> ### Aliases: compare_plot
>
> ### ** Examples
>
> library(dplyr)
...
> sb %>%
+ compare_plot()
Warning: `unite_()` was deprecated in tidyr 1.2.0.
ℹ Please use `unite()` instead.
ℹ The deprecated feature was likely used in the ggmosaic package.
Please report the issue at .
Error in make_title(..., self = self) :
unused arguments ("dataset class", "x")
Calls: %>% ... labels -> -> resolve_label ->
Execution halted
```
# AnalysisLin
* Version: 0.1.2
* GitHub: NA
* Source code: https://github.com/cran/AnalysisLin
* Date/Publication: 2024-01-30 00:10:10 UTC
* Number of recursive dependencies: 118
Run `revdepcheck::cloud_details(, "AnalysisLin")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘AnalysisLin-Ex.R’ failed
The error most likely occurred in:
> ### Name: qq_plot
> ### Title: QQ Plots for Numerical Variables
> ### Aliases: qq_plot
>
> ### ** Examples
>
> data(mtcars)
> qq_plot(mtcars)
Error in eval(substitute(expr), data, enclos = parent.frame()) :
object 'x' not found
Calls: qq_plot ... to_basic.GeomAbline -> with -> with.default -> eval -> eval
Execution halted
```
# andurinha
* Version: 0.0.2
* GitHub: https://github.com/noemiallefs/andurinha
* Source code: https://github.com/cran/andurinha
* Date/Publication: 2020-08-13 08:40:02 UTC
* Number of recursive dependencies: 74
Run `revdepcheck::cloud_details(, "andurinha")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(andurinha)
>
> test_check("andurinha")
sample absMax
1 A 0.465
2 B 0.402
...
── Failure ('test_funtionsOutput.R:29:3'): plotPeaks return a ggplot objetc ────
class(...) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
── Failure ('test_funtionsOutput.R:32:3'): plotPeaks return a ggplot objetc ────
class(...) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 43 ]
Error: Test failures
Execution halted
```
# animbook
* Version: 1.0.0
* GitHub: https://github.com/KrisanatA/animbook
* Source code: https://github.com/cran/animbook
* Date/Publication: 2023-12-05 17:50:07 UTC
* Number of recursive dependencies: 85
Run `revdepcheck::cloud_details(, "animbook")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘animbook-Ex.R’ failed
The error most likely occurred in:
> ### Name: anim_animate
> ### Title: Modified the ggplot object
> ### Aliases: anim_animate
>
> ### ** Examples
>
> animbook <- anim_prep(data = osiris, id = ID, values = sales, time = year, group = japan)
>
> plot <- wallaby_plot(animbook)
You can now use the animbook::anim_animate() function to
transform it into an animated object
>
> animate <- anim_animate(plot)
Error in plot$plot_env : object of type 'object' is not subsettable
Calls: anim_animate
Execution halted
```
# ANN2
* Version: 2.3.4
* GitHub: https://github.com/bflammers/ANN2
* Source code: https://github.com/cran/ANN2
* Date/Publication: 2020-12-01 10:00:02 UTC
* Number of recursive dependencies: 48
Run `revdepcheck::cloud_details(, "ANN2")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ANN2)
>
> # Only test if not on mac
> if (tolower(Sys.info()[["sysname"]]) != "darwin") {
+ test_check("ANN2")
+ }
...
── Failure ('test-plotting.R:59:3'): the reconstruction_plot.ANN() function works correctly ──
p_AE$labels$colour not equal to "col".
target is NULL, current is character
── Failure ('test-plotting.R:77:3'): the compression_plot.ANN() function works correctly ──
p_AE$labels$colour not equal to "col".
target is NULL, current is character
[ FAIL 5 | WARN 2 | SKIP 4 | PASS 143 ]
Error: Test failures
Execution halted
```
## In both
* checking C++ specification ... NOTE
```
Specified C++11: please drop specification unless essential
```
* checking installed package size ... NOTE
```
installed size is 48.9Mb
sub-directories of 1Mb or more:
cereal 1.4Mb
libs 47.4Mb
```
* checking LazyData ... NOTE
```
'LazyData' is specified without a 'data' directory
```
# APackOfTheClones
* Version: 1.2.4
* GitHub: https://github.com/Qile0317/APackOfTheClones
* Source code: https://github.com/cran/APackOfTheClones
* Date/Publication: 2024-11-18 22:30:02 UTC
* Number of recursive dependencies: 174
Run `revdepcheck::cloud_details(, "APackOfTheClones")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘APackOfTheClones-Ex.R’ failed
The error most likely occurred in:
> ### Name: APOTCPlot
> ### Title: Various variations of visualizations of clonal expansion
> ### post-RunAPOTC
> ### Aliases: APOTCPlot
>
> ### ** Examples
>
...
by .GlobalEnv when processing object ‘combined_pbmc’
Warning: namespace ‘colorspace’ is not available and has been replaced
by .GlobalEnv when processing object ‘combined_pbmc’
>
> combined_pbmc <- RunAPOTC(
+ combined_pbmc, run_id = "run1", verbose = FALSE
+ )
>
> # plotting with default arguments will plot the latest "run1"
> clonal_packing_plot <- APOTCPlot(combined_pbmc)
```
* checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
...
27. │ └─vctrs:::stop_names(...)
28. │ └─vctrs:::stop_vctrs(...)
29. │ └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
30. ├─APackOfTheClones:::name_latest_legend_layer(.)
31. │ └─plt %>% name_latest_layer(.ApotcLegendLayerName)
32. └─APackOfTheClones:::name_latest_layer(., .ApotcLegendLayerName)
[ FAIL 5 | WARN 57 | SKIP 10 | PASS 239 ]
Error: Test failures
Execution halted
```
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘APackOfTheClones-install.Rmd’ using rmarkdown
--- finished re-building ‘APackOfTheClones-install.Rmd’
--- re-building ‘APackOfTheClones-runs.Rmd’ using rmarkdown
```
## In both
* checking contents of ‘data’ directory ... WARNING
```
Output for data("combined_pbmc", package = "APackOfTheClones"):
Warning: namespace ‘colorspace’ is not available and has been replaced
by .GlobalEnv when processing object ‘combined_pbmc’
Warning: namespace ‘colorspace’ is not available and has been replaced
by .GlobalEnv when processing object ‘combined_pbmc’
Warning: namespace ‘colorspace’ is not available and has been replaced
by .GlobalEnv when processing object ‘combined_pbmc’
Warning: namespace ‘colorspace’ is not available and has been replaced
by .GlobalEnv when processing object ‘combined_pbmc’
```
* checking installed package size ... NOTE
```
installed size is 7.6Mb
sub-directories of 1Mb or more:
help 1.1Mb
libs 5.3Mb
```
# applicable
* Version: 0.1.1
* GitHub: https://github.com/tidymodels/applicable
* Source code: https://github.com/cran/applicable
* Date/Publication: 2024-04-25 00:00:04 UTC
* Number of recursive dependencies: 114
Run `revdepcheck::cloud_details(, "applicable")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(applicable)
Loading required package: ggplot2
>
> test_check("applicable")
Loading required package: dplyr
...
`expected` is a character vector ('percentile')
── Failure ('test-plot.R:36:3'): output of autoplot.apd_pca is correct when options=distance are provided ──
ad_plot$labels$y (`actual`) not equal to "percentile" (`expected`).
`actual` is NULL
`expected` is a character vector ('percentile')
[ FAIL 3 | WARN 0 | SKIP 22 | PASS 90 ]
Error: Test failures
Execution halted
```
# arena2r
* Version: 1.0.0
* GitHub: https://github.com/pedroliman/arena2r
* Source code: https://github.com/cran/arena2r
* Date/Publication: 2018-10-19 15:30:03 UTC
* Number of recursive dependencies: 86
Run `revdepcheck::cloud_details(, "arena2r")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(arena2r)
>
> test_check("arena2r")
[ FAIL 3 | WARN 6 | SKIP 0 | PASS 4 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
── Failure ('tests_arena2r.R:31:3'): plots_sao_gerados ─────────────────────────
`plot_conf` has type 'object', not 'list'.
── Failure ('tests_arena2r.R:32:3'): plots_sao_gerados ─────────────────────────
`plot_scat` has type 'object', not 'list'.
── Failure ('tests_arena2r.R:33:3'): plots_sao_gerados ─────────────────────────
`plot_box` has type 'object', not 'list'.
[ FAIL 3 | WARN 6 | SKIP 0 | PASS 4 ]
Error: Test failures
Execution halted
```
## In both
* checking dependencies in R code ... NOTE
```
Namespaces in Imports field not imported from:
‘purrr’ ‘shinyBS’ ‘shinydashboard’ ‘shinyjs’
All declared Imports should be used.
```
# ASRgenomics
* Version: 1.1.4
* GitHub: NA
* Source code: https://github.com/cran/ASRgenomics
* Date/Publication: 2024-01-29 21:20:02 UTC
* Number of recursive dependencies: 136
Run `revdepcheck::cloud_details(, "ASRgenomics")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
...
`expected[2:2]`: "ggplot"
── Failure ('test-qc.R:58:3'): filters work ────────────────────────────────────
class(M_filter$plot.maf) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 5 | WARN 7 | SKIP 0 | PASS 258 ]
Error: Test failures
Execution halted
```
## In both
* checking installed package size ... NOTE
```
installed size is 8.9Mb
sub-directories of 1Mb or more:
data 8.5Mb
```
# assignPOP
* Version: 1.3.0
* GitHub: https://github.com/alexkychen/assignPOP
* Source code: https://github.com/cran/assignPOP
* Date/Publication: 2024-03-13 08:30:02 UTC
* Number of recursive dependencies: 138
Run `revdepcheck::cloud_details(, "assignPOP")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(assignPOP)
>
> test_check("assignPOP")
Correct assignment rates were estimated!!
A total of 3 assignment tests for 3 pops.
...
── Failure ('test_accuracy.R:8:3'): Calculate assignment accuracy for Monte-Carlo results ──
`plot` has type 'object', not 'list'.
── Failure ('test_accuracy.R:18:3'): Calculate assignment accuracy for K-fold results ──
`plot` has type 'object', not 'list'.
── Failure ('test_membership.R:5:3'): Plot membership probability ──────────────
`plot` has type 'object', not 'list'.
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 39 ]
Error: Test failures
Execution halted
```
# autocogs
* Version: 0.1.4
* GitHub: https://github.com/schloerke/autocogs
* Source code: https://github.com/cran/autocogs
* Date/Publication: 2021-05-29 17:00:05 UTC
* Number of recursive dependencies: 70
Run `revdepcheck::cloud_details(, "autocogs")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(autocogs)
>
> test_check("autocogs")
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 223 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
8. └─autocogs (local) FUN(X[[i]], ...)
9. └─base::lapply(...)
10. └─autocogs (local) FUN(X[[i]], ...)
11. ├─base::do.call(fn, args)
12. └─autocogs (local) ``(...)
13. └─base::do.call(loess, c(core_params, params$method.args))
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 223 ]
Error: Test failures
Execution halted
```
## In both
* checking dependencies in R code ... NOTE
```
Namespaces in Imports field not imported from:
‘MASS’ ‘broom’ ‘diptest’ ‘ggplot2’ ‘hexbin’ ‘moments’
All declared Imports should be used.
```
# autoplotly
* Version: 0.1.4
* GitHub: https://github.com/terrytangyuan/autoplotly
* Source code: https://github.com/cran/autoplotly
* Date/Publication: 2021-04-18 06:50:11 UTC
* Number of recursive dependencies: 85
Run `revdepcheck::cloud_details(, "autoplotly")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(autoplotly)
>
> test_check("autoplotly")
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 5 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
`expected`: TRUE
── Failure ('test_all.R:16:3'): autoplotly is composable with additional ggplot2 elements ──
inherits(p$ggplot_obj, "ggplot") is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 5 ]
Error: Test failures
Execution halted
```
# bartMan
* Version: 0.1.1
* GitHub: NA
* Source code: https://github.com/cran/bartMan
* Date/Publication: 2024-07-24 12:10:02 UTC
* Number of recursive dependencies: 132
Run `revdepcheck::cloud_details(, "bartMan")` for more info
## Newly broken
* checking whether package ‘bartMan’ can be installed ... ERROR
```
Installation failed.
See ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/00install.out’ for details.
```
## Installation
### Devel
```
* installing *source* package ‘bartMan’ ...
** package ‘bartMan’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
Error in eval(exprs[i], envir) : object 'justify_grobs' not found
Error: unable to load R code in package ‘bartMan’
Execution halted
ERROR: lazy loading failed for package ‘bartMan’
* removing ‘/tmp/workdir/bartMan/new/bartMan.Rcheck/bartMan’
```
### CRAN
```
* installing *source* package ‘bartMan’ ...
** package ‘bartMan’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bartMan)
```
# bayesAB
* Version: 1.1.3
* GitHub: https://github.com/FrankPortman/bayesAB
* Source code: https://github.com/cran/bayesAB
* Date/Publication: 2021-06-25 00:50:02 UTC
* Number of recursive dependencies: 69
Run `revdepcheck::cloud_details(, "bayesAB")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(bayesAB)
>
> test_check("bayesAB")
[ FAIL 1 | WARN 5 | SKIP 0 | PASS 140 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-dists.R:34:3'): Success ──────────────────────────────────────
plotNormalInvGamma(3, 1, 1, 1)$labels$y not equal to "sig_sq".
target is NULL, current is character
[ FAIL 1 | WARN 5 | SKIP 0 | PASS 140 ]
Error: Test failures
Execution halted
```
## In both
* checking Rd files ... NOTE
```
checkRd: (-1) plotDistributions.Rd:32: Lost braces
32 | plot{...} functions are generated programmatically so the function calls in
| ^
```
# bayesassurance
* Version: 0.1.0
* GitHub: https://github.com/jpan928/bayesassurance_rpackage
* Source code: https://github.com/cran/bayesassurance
* Date/Publication: 2022-06-17 10:40:17 UTC
* Number of recursive dependencies: 84
Run `revdepcheck::cloud_details(, "bayesassurance")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(bayesassurance)
>
> test_check("bayesassurance")
[1] 20 10
[1] 30 10
[1] 40 10
...
Error in `out$plot$labels`: object of type 'object' is not subsettable
Backtrace:
▆
1. └─testthat::expect_identical(out$plot$labels$y, "Power/Assurance") at test-pwr_curves.R:114:3
2. └─testthat::quasi_label(enquo(object), label, arg = "object")
3. └─rlang::eval_bare(expr, quo_get_env(quo))
[ FAIL 15 | WARN 92 | SKIP 0 | PASS 125 ]
Error: Test failures
Execution halted
```
# BayesCVI
* Version: 1.0.1
* GitHub: NA
* Source code: https://github.com/cran/BayesCVI
* Date/Publication: 2024-09-04 15:50:02 UTC
* Number of recursive dependencies: 30
Run `revdepcheck::cloud_details(, "BayesCVI")` for more info
## Newly broken
* checking whether package ‘BayesCVI’ can be installed ... WARNING
```
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘BayesCVI’
See ‘/tmp/workdir/BayesCVI/new/BayesCVI.Rcheck/00install.out’ for details.
```
# BayesianReasoning
* Version: 0.4.2
* GitHub: https://github.com/gorkang/BayesianReasoning
* Source code: https://github.com/cran/BayesianReasoning
* Date/Publication: 2023-11-14 11:33:20 UTC
* Number of recursive dependencies: 104
Run `revdepcheck::cloud_details(, "BayesianReasoning")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(BayesianReasoning)
>
> test_check("BayesianReasoning")
Plot created in: ./FP_10_sens_100_screening_1667_diagnostic_44.png
...
`names(expected)` is absent
── Failure ('test-PPV_heatmap.R:1097:3'): Plot with line overlay ───────────────
vapply(p$result$layers, function(x) class(x$geom)[1], "") (`actual`) not identical to c("GeomTile", "GeomSegment", "GeomPoint", "GeomMarkRect") (`expected`).
`names(actual)` is a character vector ('geom_tile', 'annotate', 'annotate...3', 'geom_mark_rect')
`names(expected)` is absent
[ FAIL 8 | WARN 16 | SKIP 4 | PASS 115 ]
Error: Test failures
Execution halted
```
# BayesMultiMode
* Version: 0.7.3
* GitHub: https://github.com/paullabonne/BayesMultiMode
* Source code: https://github.com/cran/BayesMultiMode
* Date/Publication: 2024-10-31 15:30:06 UTC
* Number of recursive dependencies: 104
Run `revdepcheck::cloud_details(, "BayesMultiMode")` for more info
## Newly broken
* checking whether package ‘BayesMultiMode’ can be installed ... WARNING
```
Found the following significant warnings:
Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
See ‘/tmp/workdir/BayesMultiMode/new/BayesMultiMode.Rcheck/00install.out’ for details.
```
## In both
* checking installed package size ... NOTE
```
installed size is 6.5Mb
sub-directories of 1Mb or more:
help 6.1Mb
```
# BCEA
* Version: 2.4.7
* GitHub: https://github.com/n8thangreen/BCEA
* Source code: https://github.com/cran/BCEA
* Date/Publication: 2025-01-14 12:30:08 UTC
* Number of recursive dependencies: 123
Run `revdepcheck::cloud_details(, "BCEA")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘BCEA-Ex.R’ failed
The error most likely occurred in:
> ### Name: plot.bcea
> ### Title: Summary Plot of the Health Economic Analysis
> ### Aliases: plot.bcea
> ### Keywords: hplot
>
> ### ** Examples
>
...
21. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
22. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
23. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
24. │ └─base::withCallingHandlers(...)
25. └─ggplot2::merge_element(t2[[item]], t1[[item]])
26. ├─S7::S7_dispatch()
27. └─ggplot2 (local) `method(merge_element, list(class_any, class_any))`(new = ``, old = ``, ...)
28. └─cli::cli_abort("No method for merging {.cls {class(new)[1]}} into {.cls {class(old)[1]}}.")
29. └─rlang::abort(...)
Execution halted
```
# bdsm
* Version: 0.2.1
* GitHub: NA
* Source code: https://github.com/cran/bdsm
* Date/Publication: 2025-05-02 18:50:02 UTC
* Number of recursive dependencies: 110
Run `revdepcheck::cloud_details(, "bdsm")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
[2] "ggplot" -
[3] "ggplot2::gg" -
[4] "S7_object" -
[5] "gg" | "gg" [1]
- "ggplot" [2]
[6] "ggarrange" | "ggarrange" [3]
[ FAIL 10 | WARN 0 | SKIP 6 | PASS 69 ]
Error: Test failures
Execution halted
```
## In both
* checking re-building of vignette outputs ... WARNING
```
Error(s) in re-building vignettes:
...
--- re-building ‘bdsm_vignette.Rnw’ using Sweave
Error: processing vignette 'bdsm_vignette.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'bdsm_vignette.tex' failed.
LaTeX errors:
! LaTeX Error: File `vmargin.sty' not found.
Type X to quit or to proceed,
or enter new name. (Default extension: sty)
...
l.5 \usepackage
{amsmath}^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘bdsm_vignette.Rnw’
SUMMARY: processing the following file failed:
‘bdsm_vignette.Rnw’
Error: Vignette re-building failed.
Execution halted
```
# BeeBDC
* Version: 1.2.1
* GitHub: https://github.com/jbdorey/BeeBDC
* Source code: https://github.com/cran/BeeBDC
* Date/Publication: 2024-11-04 04:10:02 UTC
* Number of recursive dependencies: 217
Run `revdepcheck::cloud_details(, "BeeBDC")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
attributes(testOut)$class (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-summaryMaps.R:23:3'): summaryMaps expected class ─────────────
`testMap` has type 'object', not 'list'.
[ FAIL 8 | WARN 5 | SKIP 0 | PASS 242 ]
Error: Test failures
Execution halted
```
## In both
* checking data for non-ASCII characters ... NOTE
```
Note: found 219 marked UTF-8 strings
```
# benchr
* Version: 0.2.5
* GitHub: NA
* Source code: https://github.com/cran/benchr
* Date/Publication: 2020-03-07 06:30:03 UTC
* Number of recursive dependencies: 28
Run `revdepcheck::cloud_details(, "benchr")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> if (requireNamespace("tinytest", quietly = TRUE)) {
+ tinytest::test_package("benchr")
+ }
test-benchmark.R.............. 0 tests 0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
...
call| expect_equal(class(pp2), c("gg", "ggplot"))
diff| Lengths (2, 5) differ (string compare on first 2)
diff| 1 string mismatch
----- FAILED[attr]: test-plot.R<62--62>
call| expect_equal(pp2$labels, list(x = "replications", y = "time",
call| --> colour = NULL))
diff| Attributes: < names for current but not for target >
diff| Attributes: < Length mismatch: comparison on first 0 components >
Error: 10 out of 176 tests failed
Execution halted
```
## In both
* checking C++ specification ... NOTE
```
Specified C++11: please drop specification unless essential
```
* checking LazyData ... NOTE
```
'LazyData' is specified without a 'data' directory
```
# biclustermd
* Version: 0.2.3
* GitHub: https://github.com/jreisner/biclustermd
* Source code: https://github.com/cran/biclustermd
* Date/Publication: 2021-06-17 15:10:06 UTC
* Number of recursive dependencies: 81
Run `revdepcheck::cloud_details(, "biclustermd")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(biclustermd)
Loading required package: ggplot2
Loading required package: tidyr
Attaching package: 'tidyr'
...
── Failure ('test-autoplot_biclustermd.R:6:3'): autoplot_biclustermd() correctly plots cluster lines ──
ap$data[[3]]$xintercept[-1] not equal to cumsum(colSums(sbc$P)) + 0.5.
Classes differ: 'mapped_discrete'/'numeric' is not 'numeric'
── Failure ('test-autoplot_biclustermd.R:7:3'): autoplot_biclustermd() correctly plots cluster lines ──
ap$data[[4]]$yintercept[-1] not equal to cumsum(colSums(sbc$Q)) + 0.5.
Classes differ: 'mapped_discrete'/'numeric' is not 'numeric'
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 66 ]
Error: Test failures
Execution halted
```
## In both
* checking dependencies in R code ... NOTE
```
Namespace in Imports field not imported from: ‘nycflights13’
All declared Imports should be used.
```
# biometryassist
* Version: 1.3.0
* GitHub: https://github.com/biometryhub/biometryassist
* Source code: https://github.com/cran/biometryassist
* Date/Publication: 2025-06-11 11:00:12 UTC
* Number of recursive dependencies: 85
Run `revdepcheck::cloud_details(, "biometryassist")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(biometryassist)
>
> test_check("biometryassist")
Starting 2 test processes
[ FAIL 7 | WARN 0 | SKIP 157 | PASS 311 ]
...
• resplot/resplot-for-asreml-pt-2.svg
• resplot/resplot-for-asreml-pt-3.svg
• resplot/resplot-for-asreml-single.svg
• resplot/resplot-for-lme4.svg
• resplot/resplot-for-sommer-mmer.svg
• resplot/resplot-for-sommer-mmes.svg
• resplot/resplot-onepage-true.svg
• resplot/resplot-with-smaller-call.svg
Error: Test failures
Execution halted
```
## In both
* checking package dependencies ... NOTE
```
Packages which this enhances but not available for checking:
'asreml', 'ARTool', 'lme4', 'sommer'
```
* checking Rd cross-references ... NOTE
```
Package unavailable to check Rd xrefs: ‘lme4’
```
# BiVariAn
* Version: 1.0.1
* GitHub: https://github.com/AndresFloresG/BiVariAn
* Source code: https://github.com/cran/BiVariAn
* Date/Publication: 2025-03-05 13:10:02 UTC
* Number of recursive dependencies: 198
Run `revdepcheck::cloud_details(, "BiVariAn")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘BiVariAn-Ex.R’ failed
The error most likely occurred in:
> ### Name: auto_bar_categ
> ### Title: Automatic generation of barplot with percentages
> ### Aliases: auto_bar_categ
>
> ### ** Examples
>
> data<-data.frame(categ = rep(letters[1:2], 10),
...
1. └─BiVariAn::auto_bar_categ(data = data, groupvar = "categ", lang_labs = "EN")
2. └─BiVariAn (local) theme_func()
3. ├─... %+replace% ...
4. │ └─ggplot2::is_theme(e1)
5. │ └─S7::S7_inherits(x, class_theme)
6. └─ggprism::theme_prism(...)
7. └─parent %+replace% t
8. └─cli::cli_abort("{.code %+replace%} requires two theme objects")
9. └─rlang::abort(...)
Execution halted
```
* checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
...
4. │ └─ggplot2::is_theme(e1)
5. │ └─S7::S7_inherits(x, class_theme)
6. └─ggprism::theme_prism(...)
7. └─parent %+replace% t
8. └─cli::cli_abort("{.code %+replace%} requires two theme objects")
9. └─rlang::abort(...)
[ FAIL 8 | WARN 2 | SKIP 7 | PASS 100 ]
Error: Test failures
Execution halted
```
# brolgar
* Version: 1.0.1
* GitHub: https://github.com/njtierney/brolgar
* Source code: https://github.com/cran/brolgar
* Date/Publication: 2024-05-10 14:50:34 UTC
* Number of recursive dependencies: 100
Run `revdepcheck::cloud_details(, "brolgar")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘brolgar-Ex.R’ failed
The error most likely occurred in:
> ### Name: facet_sample
> ### Title: Facet data into groups to facilitate exploration
> ### Aliases: facet_sample
>
> ### ** Examples
>
> library(ggplot2)
> ggplot(heights,
+ aes(x = year,
+ y = height_cm,
+ group = country)) +
+ geom_line() +
+ facet_sample()
Error in if (params$as.table) { : argument is of length zero
Calls: ... -> setup -> -> compute_layout
Execution halted
```
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘exploratory-modelling.Rmd’ using rmarkdown
```
# bullseye
* Version: 1.0.0
* GitHub: https://github.com/cbhurley/bullseye
* Source code: https://github.com/cran/bullseye
* Date/Publication: 2025-05-09 10:10:02 UTC
* Number of recursive dependencies: 158
Run `revdepcheck::cloud_details(, "bullseye")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘bullseye-Ex.R’ failed
The error most likely occurred in:
> ### Name: add_nobs_to_pairwise
> ### Title: Adds number of observations column to pairwise tibble
> ### Aliases: add_nobs_to_pairwise
>
> ### ** Examples
>
> irisc <- pairwise_scores(iris[40:150,], by= "Species")
...
20. │ └─base::lapply(...)
21. │ └─ggplot2 (local) FUN(X[[i]], ...)
22. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
23. │ └─self$draw_panel(...)
24. └─base::.handleSimpleError(...)
25. └─rlang (local) h(simpleError(msg, call))
26. └─handlers[[1L]](cnd)
27. └─cli::cli_abort(...)
28. └─rlang::abort(...)
Execution halted
```
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘calc_pairwise.Rmd’ using rmarkdown
--- finished re-building ‘calc_pairwise.Rmd’
--- re-building ‘integrating.Rmd’ using rmarkdown
```
# calmr
* Version: 0.7.0
* GitHub: https://github.com/victor-navarro/calmr
* Source code: https://github.com/cran/calmr
* Date/Publication: 2025-05-11 21:30:02 UTC
* Number of recursive dependencies: 105
Run `revdepcheck::cloud_details(, "calmr")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(calmr)
Attaching package: 'calmr'
The following object is masked from 'package:stats':
...
── Failure ('test-RSA.R:64:3'): plotting RSA with a test works ─────────────────
`plt` does not have names.
── Failure ('test-graphs.R:15:3'): calmr_model_graph works ─────────────────────
`g` does not have names.
── Failure ('test-graphs.R:25:3'): calmr_model_graph takes a trial ─────────────
`g` does not have names.
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 246 ]
Error: Test failures
Execution halted
```
# canvasXpress
* Version: 1.56.1
* GitHub: https://github.com/neuhausi/canvasXpress
* Source code: https://github.com/cran/canvasXpress
* Date/Publication: 2025-04-08 19:30:02 UTC
* Number of recursive dependencies: 146
Run `revdepcheck::cloud_details(, "canvasXpress")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(canvasXpress)
> require(canvasXpress.data)
Loading required package: canvasXpress.data
>
> test_check("canvasXpress")
Loading required package: htmlwidgets
...
2. │ └─base::withCallingHandlers(...)
3. └─canvasXpress::ggplot.as.list(gplot)
4. └─canvasXpress:::gg_cxplot(o, "canvas", ...)
5. └─canvasXpress:::gg_theme(o)
6. ├─base::as.character(e[[a]])
7. └─base::as.character.default(e[[a]])
[ FAIL 9 | WARN 1 | SKIP 479 | PASS 58 ]
Error: Test failures
Execution halted
```
# carbonr
* Version: 0.2.1
* GitHub: NA
* Source code: https://github.com/cran/carbonr
* Date/Publication: 2024-10-16 18:10:09 UTC
* Number of recursive dependencies: 99
Run `revdepcheck::cloud_details(, "carbonr")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(carbonr)
>
> test_check("carbonr")
[ FAIL 3 | WARN 7 | SKIP 0 | PASS 117 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
── Failure ('test-output_display.R:15:3'): output_display generates gg/ggplot object ──
class(output1) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
── Failure ('test-output_display.R:16:3'): output_display generates gg/ggplot object ──
class(output2) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
[ FAIL 3 | WARN 7 | SKIP 0 | PASS 117 ]
Error: Test failures
Execution halted
```
## In both
* checking dependencies in R code ... NOTE
```
Namespaces in Imports field not imported from:
‘sp’ ‘tibble’
All declared Imports should be used.
```
* checking data for non-ASCII characters ... NOTE
```
Note: found 710 marked UTF-8 strings
```
# caretEnsemble
* Version: 4.0.1
* GitHub: https://github.com/zachmayer/caretEnsemble
* Source code: https://github.com/cran/caretEnsemble
* Date/Publication: 2024-09-12 21:50:09 UTC
* Number of recursive dependencies: 174
Run `revdepcheck::cloud_details(, "caretEnsemble")` for more info
## Newly broken
* checking installed package size ... NOTE
```
installed size is 5.2Mb
sub-directories of 1Mb or more:
data 4.5Mb
```
# cartographr
* Version: 0.2.2
* GitHub: https://github.com/da-wi/cartographr
* Source code: https://github.com/cran/cartographr
* Date/Publication: 2024-06-28 14:50:09 UTC
* Number of recursive dependencies: 95
Run `revdepcheck::cloud_details(, "cartographr")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
> test_check("cartographr")
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 106 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-utils.R:13:3'): add_attribution returns correct ggplot2 labs object ──
`result` inherits from 'ggplot2::labels'/'gg'/'S7_object' not 'labels'.
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 106 ]
Error: Test failures
Execution halted
```
## In both
* checking installed package size ... NOTE
```
installed size is 5.3Mb
sub-directories of 1Mb or more:
data 3.5Mb
```
# causact
* Version: 0.5.7
* GitHub: https://github.com/flyaflya/causact
* Source code: https://github.com/cran/causact
* Date/Publication: 2025-01-15 21:20:01 UTC
* Number of recursive dependencies: 98
Run `revdepcheck::cloud_details(, "causact")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(causact)
WARNING: The 'r-causact' Conda environment does not exist. To use the 'dag_numpyro()' function, you need to set up the 'r-causact' environment. Run install_causact_deps() when ready to set up the 'r-causact' environment.
Attaching package: 'causact'
The following objects are masked from 'package:stats':
...
WARNING: The 'r-causact' Conda environment does not exist. To use the 'dag_numpyro()' function, you need to set up the 'r-causact' environment. Run install_causact_deps() when ready to set up the 'r-causact' environment.
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 60 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-dag_plot.R:4:3'): dag plot creates graph ─────────────────────
`plotGr` has type 'object', not 'list'.
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 60 ]
Error: Test failures
Execution halted
```
# CausalImpact
* Version: 1.3.0
* GitHub: NA
* Source code: https://github.com/cran/CausalImpact
* Date/Publication: 2022-11-09 08:40:40 UTC
* Number of recursive dependencies: 73
Run `revdepcheck::cloud_details(, "CausalImpact")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘CausalImpact_import_test.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # Copyright 2014-2022 Google Inc. All rights reserved.
> #
> # Licensed under the Apache License, Version 2.0 (the "License");
> # you may not use this file except in compliance with the License.
> # You may obtain a copy of the License at
> #
...
Lengths differ: 5 is not 2
── Failure ('test-impact-plot.R:147:3'): CreateImpactPlot ──────────────────────
!isTRUE(all.equal(q1, q2, check.environment = FALSE)) is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 3 | WARN 4 | SKIP 0 | PASS 738 ]
Error: Test failures
Execution halted
```
# centerline
* Version: 0.2.2
* GitHub: https://github.com/atsyplenkov/centerline
* Source code: https://github.com/cran/centerline
* Date/Publication: 2025-03-16 04:40:02 UTC
* Number of recursive dependencies: 108
Run `revdepcheck::cloud_details(, "centerline")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘centerline-Ex.R’ failed
The error most likely occurred in:
> ### Name: geom_cnt_text
> ### Title: Plot label or text on centerline with ggplot2
> ### Aliases: geom_cnt_text geom_cnt_label
>
> ### ** Examples
>
> ## Don't show:
...
24. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
25. │ └─self$draw_panel(...)
26. │ └─geomtextpath (local) draw_panel(...)
27. │ └─geomtextpath:::sf_textgrob(...)
28. └─base::.handleSimpleError(...)
29. └─rlang (local) h(simpleError(msg, call))
30. └─handlers[[1L]](cnd)
31. └─cli::cli_abort(...)
32. └─rlang::abort(...)
Execution halted
```
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
6. └─base::lapply(...)
7. └─ggplot2 (local) FUN(X[[i]], ...)
8. ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
9. └─self$draw_panel(...)
10. └─geomtextpath (local) draw_panel(...)
11. └─geomtextpath:::sf_textgrob(...)
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 245 ]
Error: Test failures
Execution halted
```
# Certara.Xpose.NLME
* Version: 2.0.2
* GitHub: NA
* Source code: https://github.com/cran/Certara.Xpose.NLME
* Date/Publication: 2025-01-28 15:50:10 UTC
* Number of recursive dependencies: 98
Run `revdepcheck::cloud_details(, "Certara.Xpose.NLME")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘Certara.Xpose.NLME-Ex.R’ failed
The error most likely occurred in:
> ### Name: eta_vs_cov
> ### Title: ETAs vs covariate Plot
> ### Aliases: eta_vs_cov
>
> ### ** Examples
>
> eta_vs_cov(xpose::xpdb_ex_pk,
...
4. ├─purrr::map_if(...)
5. │ └─purrr:::where_if(.x, .p)
6. │ └─rlang::is_logical(.p)
7. ├─stringr::str_detect(., "@")
8. │ └─stringr:::check_lengths(string, pattern)
9. │ └─vctrs::vec_size_common(...)
10. └─vctrs:::stop_scalar_type(``(``), "string", ``)
11. └─vctrs:::stop_vctrs(...)
12. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
Execution halted
```
# cheem
* Version: 0.4.0.0
* GitHub: https://github.com/nspyrison/cheem
* Source code: https://github.com/cran/cheem
* Date/Publication: 2023-11-08 21:30:02 UTC
* Number of recursive dependencies: 148
Run `revdepcheck::cloud_details(, "cheem")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(cheem)
--------------------------------------------------------
cheem --- version 0.4.0.0
Please share bugs, suggestions, and feature requests at:
https://github.com/nspyrison/cheem/issues/
--------------------------------------------------------
...
`expected[2:2]`: "ggplot"
── Failure ('test-2_visualization.r:66:3'): radial_cheem_tour ──────────────────
class(r_ggt) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 10 ]
Error: Test failures
Execution halted
```
# circumplex
* Version: 1.0.0
* GitHub: https://github.com/jmgirard/circumplex
* Source code: https://github.com/cran/circumplex
* Date/Publication: 2024-10-28 04:30:02 UTC
* Number of recursive dependencies: 93
Run `revdepcheck::cloud_details(, "circumplex")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(circumplex)
>
> test_check("circumplex")
[ FAIL 4 | WARN 8 | SKIP 20 | PASS 97 ]
══ Skipped tests (20) ══════════════════════════════════════════════════════════
...
[ FAIL 4 | WARN 8 | SKIP 20 | PASS 97 ]
Deleting unused snapshots:
• ssm_plot/many-circle-repel.svg
• ssm_plot/many-curve-plots.svg
• ssm_plot/measure-contrast-circle-ssm.svg
• ssm_plot/measure-contrast-curve-ssm.svg
• ssm_plot/single-group-mean-ssm-no-palette.svg
• ssm_plot/single-group-mean-ssm-with-labels.svg
Error: Test failures
Execution halted
```
# clifro
* Version: 3.2-5
* GitHub: https://github.com/ropensci/clifro
* Source code: https://github.com/cran/clifro
* Date/Publication: 2021-05-24 05:50:02 UTC
* Number of recursive dependencies: 80
Run `revdepcheck::cloud_details(, "clifro")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘test-all.R’
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> library(clifro)
>
> test_check("clifro")
[ FAIL 1 | WARN 1 | SKIP 4 | PASS 10 ]
...
• On CRAN (4): 'test-cf_find_station.R:4:3', 'test-cf_last_query.R:4:3',
'test-cf_query.R:4:3', 'test-cf_station.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-windrose.R:15:3'): windrose ──────────────────────────────────
tt$labels inherits from `'ggplot2::labels'/'gg'/'S7_object'` not `'character'`.
[ FAIL 1 | WARN 1 | SKIP 4 | PASS 10 ]
Error: Test failures
Execution halted
```
## In both
* checking Rd files ... NOTE
```
checkRd: (-1) cf_save_kml.Rd:68: Lost braces
68 | \code{\link{cf_find_station}} and code{vignette("choose-station")} for
| ^
```
# climwin
* Version: 1.2.31
* GitHub: https://github.com/LiamDBailey/climwin
* Source code: https://github.com/cran/climwin
* Date/Publication: 2025-06-08 16:40:02 UTC
* Number of recursive dependencies: 80
Run `revdepcheck::cloud_details(, "climwin")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(climwin)
>
> test_check("climwin")
|
| | 0%
...
`expected`: TRUE
── Failure ('testplotwin.R:15:3'): plotwin produces a graph ────────────────────
attr(test, "class")[1] == "gg" is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 7 | WARN 761 | SKIP 3 | PASS 790 ]
Error: Test failures
Execution halted
```
# clockSim
* Version: 0.1.2
* GitHub: https://github.com/yeyuan98/clockSim
* Source code: https://github.com/cran/clockSim
* Date/Publication: 2025-04-22 20:10:01 UTC
* Number of recursive dependencies: 78
Run `revdepcheck::cloud_details(, "clockSim")` for more info
## Newly broken
* checking whether package ‘clockSim’ can be installed ... WARNING
```
Found the following significant warnings:
Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
See ‘/tmp/workdir/clockSim/new/clockSim.Rcheck/00install.out’ for details.
```
# cmcR
* Version: 0.1.11
* GitHub: NA
* Source code: https://github.com/cran/cmcR
* Date/Publication: 2022-12-10 14:00:02 UTC
* Number of recursive dependencies: 120
Run `revdepcheck::cloud_details(, "cmcR")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(cmcR)
>
> test_check("cmcR",reporter = SummaryReporter)
adding: bindata/ (stored 0%)
adding: bindata/data.bin (deflated 58%)
adding: main.xml (deflated 62%)
...
── 2. Failure ('test-diagnosticTools.R:104:3'): diagnosticTools functions work a
all(unlist(purrr::map(cmcPlt_list, ~class(.) == c("gg", "ggplot")))) is not TRUE
`actual`: FALSE
`expected`: TRUE
══ DONE ════════════════════════════════════════════════════════════════════════
Error: Test failures
Execution halted
```
## In both
* checking installed package size ... NOTE
```
installed size is 5.5Mb
sub-directories of 1Mb or more:
data 2.5Mb
doc 2.3Mb
```
# cnmap
* Version: 0.1.0
* GitHub: https://github.com/PanfengZhang/cnmap
* Source code: https://github.com/cran/cnmap
* Date/Publication: 2024-04-02 12:42:06 UTC
* Number of recursive dependencies: 58
Run `revdepcheck::cloud_details(, "cnmap")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘cnmap-Ex.R’ failed
The error most likely occurred in:
> ### Name: getMap
> ### Title: China Map Data from AutoNavi Map
> ### Aliases: getMap
>
> ### ** Examples
>
> library(cnmap)
>
> map1 <- getMap(code = "110000") # get the map data of Beijing City
Error in process_cpl_read_ogr(x, quiet, check_ring_dir = check_ring_dir, :
package tibble not available: install first?
Calls: getMap ... st_read -> st_read.character -> process_cpl_read_ogr
Execution halted
```
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘Introduction.Rmd’ using rmarkdown
Quitting from Introduction.Rmd:28-35 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in `process_cpl_read_ogr()`:
! package tibble not available: install first?
---
Backtrace:
...
Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
package tibble not available: install first?
--- failed re-building ‘Introduction.Rmd’
SUMMARY: processing the following file failed:
‘Introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
```
# cocktailApp
* Version: 0.2.3
* GitHub: https://github.com/shabbychef/cocktailApp
* Source code: https://github.com/cran/cocktailApp
* Date/Publication: 2023-07-19 13:40:09 UTC
* Number of recursive dependencies: 93
Run `revdepcheck::cloud_details(, "cocktailApp")` for more info
## Newly broken
* checking whether package ‘cocktailApp’ can be installed ... ERROR
```
Installation failed.
See ‘/tmp/workdir/cocktailApp/new/cocktailApp.Rcheck/00install.out’ for details.
```
## Newly fixed
* checking data for non-ASCII characters ... NOTE
```
Note: found 14729 marked UTF-8 strings
```
## Installation
### Devel
```
* installing *source* package ‘cocktailApp’ ...
** package ‘cocktailApp’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error: .onLoad failed in loadNamespace() for 'ggtern', details:
call: NULL
error: object properties are invalid:
- @lineend must be or , not S3
Execution halted
ERROR: lazy loading failed for package ‘cocktailApp’
* removing ‘/tmp/workdir/cocktailApp/new/cocktailApp.Rcheck/cocktailApp’
```
### CRAN
```
* installing *source* package ‘cocktailApp’ ...
** package ‘cocktailApp’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cocktailApp)
```
# coda.plot
* Version: 0.1.9
* GitHub: NA
* Source code: https://github.com/cran/coda.plot
* Date/Publication: 2025-04-20 21:30:02 UTC
* Number of recursive dependencies: 41
Run `revdepcheck::cloud_details(, "coda.plot")` for more info
## Newly broken
* checking whether package ‘coda.plot’ can be installed ... ERROR
```
Installation failed.
See ‘/tmp/workdir/coda.plot/new/coda.plot.Rcheck/00install.out’ for details.
```
## Installation
### Devel
```
* installing *source* package ‘coda.plot’ ...
** package ‘coda.plot’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Error: .onLoad failed in loadNamespace() for 'ggtern', details:
call: NULL
error: object properties are invalid:
- @lineend must be or , not S3
Execution halted
ERROR: lazy loading failed for package ‘coda.plot’
* removing ‘/tmp/workdir/coda.plot/new/coda.plot.Rcheck/coda.plot’
```
### CRAN
```
* installing *source* package ‘coda.plot’ ...
** package ‘coda.plot’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (coda.plot)
```
# conquestr
* Version: 1.5.1
* GitHub: NA
* Source code: https://github.com/cran/conquestr
* Date/Publication: 2025-05-18 07:50:02 UTC
* Number of recursive dependencies: 77
Run `revdepcheck::cloud_details(, "conquestr")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(conquestr)
>
> test_check("conquestr")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 25 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-ConQuestRout.R:10:3'): Rout file is of correct type ──────────
`myRoutPlot` has type 'object', not 'list'.
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 25 ]
Error: Test failures
Execution halted
```
# constructive
* Version: 1.1.0
* GitHub: https://github.com/cynkra/constructive
* Source code: https://github.com/cran/constructive
* Date/Publication: 2025-01-10 14:10:01 UTC
* Number of recursive dependencies: 111
Run `revdepcheck::cloud_details(, "constructive")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(constructive)
>
> test_check("constructive")
[ FAIL 6 | WARN 2 | SKIP 113 | PASS 24 ]
══ Skipped tests (113) ═════════════════════════════════════════════════════════
...
13. │ └─constructive:::strip_theme(x)
14. │ └─constructive:::`$<-`(`*tmp*`, size, value = NULL)
15. │ └─constructive:::`[[<-`(...)
16. └─rlang (local) ``(``)
17. └─handlers[[1L]](cnd)
18. └─rlang::abort(...)
[ FAIL 6 | WARN 2 | SKIP 113 | PASS 24 ]
Error: Test failures
Execution halted
```
# CoSMoS
* Version: 2.1.0
* GitHub: https://github.com/TycheLab/CoSMoS
* Source code: https://github.com/cran/CoSMoS
* Date/Publication: 2021-05-29 23:20:08 UTC
* Number of recursive dependencies: 77
Run `revdepcheck::cloud_details(, "CoSMoS")` for more info
## Newly broken
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘vignette.Rmd’ using rmarkdown
```
# countfitteR
* Version: 1.4
* GitHub: https://github.com/BioGenies/countfitteR
* Source code: https://github.com/cran/countfitteR
* Date/Publication: 2020-09-30 21:30:02 UTC
* Number of recursive dependencies: 87
Run `revdepcheck::cloud_details(, "countfitteR")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘spelling.R’
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(countfitteR)
>
> test_check("countfitteR")
[ FAIL 1 | WARN 6 | SKIP 0 | PASS 32 ]
...
1. ├─testthat::expect_equal(p$labels[[1]], "x") at testing.R:45:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─p$labels[[1]]
5. ├─S7:::`[[.S7_object`(p$labels, 1)
6. └─base::NextMethod()
[ FAIL 1 | WARN 6 | SKIP 0 | PASS 32 ]
Error: Test failures
Execution halted
```
## In both
* checking Rd files ... NOTE
```
checkRd: (-1) summary_fitlist.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary_fitlist.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary_fitlist.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary_fitlist.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) summary_fitlist.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
```
# covidcast
* Version: 0.5.2
* GitHub: https://github.com/cmu-delphi/covidcast
* Source code: https://github.com/cran/covidcast
* Date/Publication: 2023-07-12 23:40:06 UTC
* Number of recursive dependencies: 89
Run `revdepcheck::cloud_details(, "covidcast")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(covidcast)
We encourage COVIDcast API users to register on our mailing list:
https://lists.andrew.cmu.edu/mailman/listinfo/delphi-covidcast-api
We'll send announcements about new data sources, package updates,
server maintenance, and new features.
>
...
• plot/default-county-choropleth.svg
• plot/default-hrr-choropleth-with-include.svg
• plot/default-msa-choropleth-with-include.svg
• plot/default-state-choropleth-with-include.svg
• plot/default-state-choropleth-with-range.svg
• plot/state-choropleth-with-no-metadata.svg
• plot/state-line-graph-with-range.svg
• plot/state-line-graph-with-stderrs.svg
Error: Test failures
Execution halted
```
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘correlation-utils.Rmd’ using rmarkdown
--- finished re-building ‘correlation-utils.Rmd’
--- re-building ‘covidcast.Rmd’ using rmarkdown
```
## In both
* checking data for non-ASCII characters ... NOTE
```
Note: found 20 marked UTF-8 strings
```
# cowplot
* Version: 1.1.3
* GitHub: https://github.com/wilkelab/cowplot
* Source code: https://github.com/cran/cowplot
* Date/Publication: 2024-01-22 23:22:51 UTC
* Number of recursive dependencies: 96
Run `revdepcheck::cloud_details(, "cowplot")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(cowplot)
>
> test_check("cowplot")
[ FAIL 1 | WARN 4 | SKIP 7 | PASS 54 ]
══ Skipped tests (7) ═══════════════════════════════════════════════════════════
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_ggdraw.R:7:3'): basic ggdraw usage ───────────────────────────
methods::is(g) not equal to "gg".
1/1 mismatches
x[1]: "ggplot2::ggplot"
y[1]: "gg"
[ FAIL 1 | WARN 4 | SKIP 7 | PASS 54 ]
Error: Test failures
Execution halted
```
# ctrialsgov
* Version: 0.2.5
* GitHub: NA
* Source code: https://github.com/cran/ctrialsgov
* Date/Publication: 2021-10-18 16:00:02 UTC
* Number of recursive dependencies: 96
Run `revdepcheck::cloud_details(, "ctrialsgov")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ctrialsgov)
>
> test_check("ctrialsgov")
[NCT04553939] ible Local Advanved |Bladder| Cancer
[NCT03517995] of Sulforaphane in |Bladder| Cancer Chemoprevent
[NCT04210479] Comparison of |Bladder| Filling vs. Non-Fil
...
[1] "ctgov_bar_plot" - "gg" [2]
[2] "ggplot2::ggplot" -
[3] "ggplot" -
[4] "ggplot2::gg" -
[5] "S7_object" -
[6] "gg" - "ggplot" [3]
[ FAIL 1 | WARN 6 | SKIP 0 | PASS 44 ]
Error: Test failures
Execution halted
```
## In both
* checking data for non-ASCII characters ... NOTE
```
Note: found 1350 marked UTF-8 strings
```
# cvms
* Version: 1.7.0
* GitHub: https://github.com/ludvigolsen/cvms
* Source code: https://github.com/cran/cvms
* Date/Publication: 2025-03-07 11:30:07 UTC
* Number of recursive dependencies: 152
Run `revdepcheck::cloud_details(, "cvms")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(cvms)
>
> if (require("xpectr")) {
+ test_check("cvms")
+ }
Loading required package: xpectr
...
names for target but not for current
── Failure ('test_plotting_functions.R:359:3'): plot_confusion_matrix() with sum tiles, class order, and intensity_by percentage ──
`labels` not equal to list(...).
Attributes: < names for target but not for current >
Attributes: < Length mismatch: comparison on first 0 components >
Length mismatch: comparison on first 4 components
[ FAIL 15 | WARN 0 | SKIP 71 | PASS 3602 ]
Error: Test failures
Execution halted
```
# cylcop
* Version: 0.2.0
* GitHub: https://github.com/r-lib/devtools
* Source code: https://github.com/cran/cylcop
* Date/Publication: 2022-10-29 22:00:21 UTC
* Number of recursive dependencies: 95
Run `revdepcheck::cloud_details(, "cylcop")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘cylcop-Ex.R’ failed
The error most likely occurred in:
> ### Name: plot_circ_hist
> ### Title: Circular Histogram of Turn Angles
> ### Aliases: plot_circ_hist
>
> ### ** Examples
>
> set.seed(123)
...
23. │ └─l$compute_geom_2(d, theme = plot@theme)
24. │ └─ggplot2 (local) compute_geom_2(..., self = self)
25. │ └─self$geom$use_defaults(...)
26. │ └─ggplot2 (local) use_defaults(..., self = self)
27. │ └─ggplot2:::check_aesthetics(new_params, nrow(data))
28. │ └─vctrs::list_sizes(x)
29. └─vctrs:::stop_scalar_type(``(``), "x$label", ``)
30. └─vctrs:::stop_vctrs(...)
31. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
Execution halted
```
## In both
* checking Rd files ... NOTE
```
checkRd: (-1) gammamix.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gammamix.Rd:49-51: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gammamix.Rd:52-53: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) gammamix.Rd:54-55: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) joint.Rd:41-42: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) joint.Rd:43-45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) joint.Rd:46-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lnormmix.Rd:44-45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lnormmix.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) lnormmix.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
...
checkRd: (-1) vonmisesmix.Rd:45-46: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) vonmisesmix.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) weibullmix.Rd:44-45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) weibullmix.Rd:46-48: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) weibullmix.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) weibullmix.Rd:51-52: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wrappedcauchy.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wrappedcauchy.Rd:45-47: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wrappedcauchy.Rd:48-49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) wrappedcauchy.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly
```
# D2MCS
* Version: 1.0.1
* GitHub: https://github.com/drordas/D2MCS
* Source code: https://github.com/cran/D2MCS
* Date/Publication: 2022-08-23 11:40:02 UTC
* Number of recursive dependencies: 178
Run `revdepcheck::cloud_details(, "D2MCS")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘test_all.R’
Running the tests in ‘tests/test_all.R’ failed.
Complete output:
> testthat::test_check("D2MCS")
Loading required package: D2MCS
[ FAIL 5 | WARN 6 | SKIP 15 | PASS 755 ]
══ Skipped tests (15) ══════════════════════════════════════════════════════════
• On CRAN (2): 'test_D2MCS.R:129:3', 'test_D2MCS.R:213:3'
• {ranger} is not installed (13): 'test_D2MCS.R:411:3',
...
── Failure ('test_clustering.strategies.TypeBasedStrategy.R:226:3'): TypeBasedStrategy works ──
c("gg", "ggplot") not equal to class(strategyNoReal$plot()).
Lengths differ: 2 is not 5
── Failure ('test_clustering.strategies.TypeBasedStrategy.R:234:3'): TypeBasedStrategy works ──
c("gg", "ggplot") not equal to class(strategyNoBinary$plot()).
Lengths differ: 2 is not 5
[ FAIL 5 | WARN 6 | SKIP 15 | PASS 755 ]
Error: Test failures
Execution halted
```
# dabestr
* Version: 2025.3.14
* GitHub: https://github.com/ACCLAB/dabestr
* Source code: https://github.com/cran/dabestr
* Date/Publication: 2025-02-26 12:50:02 UTC
* Number of recursive dependencies: 82
Run `revdepcheck::cloud_details(, "dabestr")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
• 001_plotter/two-groups-unpaired-mean-diff-colour-float-true.svg
• 001_plotter/two-groups-unpaired-mean-diff-float-false.svg
• 001_plotter/two-groups-unpaired-mean-diff-float-true.svg
• 002_forest_plot/deltadelta-forest-plot-mean-diff.svg
• 002_forest_plot/deltadelta-forest-plot-with-plot-kwargs.svg
• 002_forest_plot/minimeta-forest-plot-mean-diff.svg
• 002_forest_plot/minimeta-forest-plot-median-diff.svg
• 002_forest_plot/minimeta-forest-plot-with-plot-kwargs.svg
Error: Test failures
Execution halted
```
# daiquiri
* Version: 1.1.1
* GitHub: https://github.com/ropensci/daiquiri
* Source code: https://github.com/cran/daiquiri
* Date/Publication: 2023-07-18 16:50:09 UTC
* Number of recursive dependencies: 104
Run `revdepcheck::cloud_details(, "daiquiri")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(daiquiri)
>
> test_check("daiquiri")
Quitting from report_htmldoc.Rmd:466-528 [daiquiri-individual-fields]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
...
36. └─rlang::abort(message, ..., call = call, arg = arg)
[ FAIL 4 | WARN 0 | SKIP 8 | PASS 472 ]
Deleting unused snapshots:
• aggregate_data/test_[ALL_FIELDS_COMBINED].csv
• aggregate_data/test_[DUPLICATES].csv
• aggregate_data/test_col1.csv
• aggregate_data/test_col2.csv
Error: Test failures
Execution halted
```
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘daiquiri.Rmd’ using rmarkdown
```
# DAISIEprep
* Version: 1.0.0
* GitHub: https://github.com/joshwlambert/DAISIEprep
* Source code: https://github.com/cran/DAISIEprep
* Date/Publication: 2024-12-18 00:20:02 UTC
* Number of recursive dependencies: 145
Run `revdepcheck::cloud_details(, "DAISIEprep")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(DAISIEprep)
>
> test_check("DAISIEprep")
[ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ]
══ Skipped tests (14) ══════════════════════════════════════════════════════════
...
── Failure ('test-plot_phylod.R:8:3'): plot_phylod runs silent without error ───
`plot_phylod(phylod = phylod, node_pies = FALSE)` produced warnings.
── Failure ('test-plot_phylod.R:13:3'): plot_phylod runs silent without error ──
`plot_phylod(phylod = phylod, node_pies = TRUE)` produced warnings.
── Failure ('test-plot_phylod.R:18:3'): plot_phylod runs silent without error ──
`plot_phylod(phylod = phylod, node_pies = TRUE)` produced warnings.
[ FAIL 4 | WARN 2 | SKIP 14 | PASS 2235 ]
Error: Test failures
Execution halted
```
# dams
* Version: 0.3.0
* GitHub: https://github.com/jsta/dams
* Source code: https://github.com/cran/dams
* Date/Publication: 2020-05-20 16:00:03 UTC
* Number of recursive dependencies: 87
Run `revdepcheck::cloud_details(, "dams")` for more info
## Newly broken
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘dams.Rmd’ using rmarkdown
```
## In both
* checking data for non-ASCII characters ... NOTE
```
Note: found 5 marked UTF-8 strings
```
# Deducer
* Version: 0.9-0
* GitHub: NA
* Source code: https://github.com/cran/Deducer
* Date/Publication: 2025-05-07 13:50:06 UTC
* Number of recursive dependencies: 114
Run `revdepcheck::cloud_details(, "Deducer")` for more info
## Newly broken
* checking whether package ‘Deducer’ can be installed ... WARNING
```
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘Deducer’
See ‘/tmp/workdir/Deducer/new/Deducer.Rcheck/00install.out’ for details.
```
# dendextend
* Version: 1.19.0
* GitHub: https://github.com/talgalili/dendextend
* Source code: https://github.com/cran/dendextend
* Date/Publication: 2024-11-15 10:40:06 UTC
* Number of recursive dependencies: 128
Run `revdepcheck::cloud_details(, "dendextend")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
>
> library(dendextend)
---------------------
Welcome to dendextend version 1.19.0
Type citation('dendextend') for how to cite the package.
...
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 872 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-ggdend.R:168:4'): ggplot doesn't have warnings for dendrograms ──
names(ggplot_build(g)) not identical to c("data", "layout", "plot").
target is NULL, current is character
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 872 ]
Error: Test failures
Execution halted
```
## In both
* checking package dependencies ... NOTE
```
Packages which this enhances but not available for checking:
'ggdendro', 'dendroextras', 'Hmisc', 'WGCNA', 'moduleColor',
'distory', 'phangorn', 'zoo'
```
* checking installed package size ... NOTE
```
installed size is 6.9Mb
sub-directories of 1Mb or more:
doc 5.8Mb
```
* checking Rd cross-references ... NOTE
```
Packages unavailable to check Rd xrefs: ‘WGCNA’, ‘dendroextras’, ‘moduleColor’, ‘distory’, ‘phangorn’, ‘ggdendro’, ‘zoo’
```
# DImodelsVis
* Version: 1.0.1
* GitHub: NA
* Source code: https://github.com/cran/DImodelsVis
* Date/Publication: 2024-02-26 14:10:15 UTC
* Number of recursive dependencies: 111
Run `revdepcheck::cloud_details(, "DImodelsVis")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘DImodelsVis-Ex.R’ failed
The error most likely occurred in:
> ### Name: conditional_ternary
> ### Title: Conditional ternary diagrams
> ### Aliases: conditional_ternary
>
> ### ** Examples
>
> library(DImodels)
...
14. │ └─base::withCallingHandlers(...)
15. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
16. └─l$compute_position(d, layout)
17. └─ggplot2 (local) compute_position(..., self = self)
18. └─self$position$use_defaults(data, self$aes_params)
19. └─ggplot2 (local) use_defaults(..., self = self)
20. └─ggplot2:::check_aesthetics(new, nrow(data))
21. └─cli::cli_abort(...)
22. └─rlang::abort(...)
Execution halted
```
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘DImodelsVis-with-complex-models.Rmd’ using rmarkdown
```
# directlabels
* Version: 2025.5.20
* GitHub: https://github.com/tdhock/directlabels
* Source code: https://github.com/cran/directlabels
* Date/Publication: 2025-05-20 10:50:02 UTC
* Number of recursive dependencies: 79
Run `revdepcheck::cloud_details(, "directlabels")` for more info
## Newly broken
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘examples.Rmd’ using knitr
```
# DiSCos
* Version: 0.1.1
* GitHub: https://github.com/Davidvandijcke/DiSCos
* Source code: https://github.com/cran/DiSCos
* Date/Publication: 2024-07-23 03:30:03 UTC
* Number of recursive dependencies: 118
Run `revdepcheck::cloud_details(, "DiSCos")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
`expected`: TRUE
── Failure ('test-DiSCoTEA.R:142:3'): cdfDiff works ────────────────────────────
typeof(discot$plot) == "list" is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 8 | WARN 2 | SKIP 1 | PASS 107 ]
Error: Test failures
Execution halted
```
# distributions3
* Version: 0.2.2
* GitHub: https://github.com/alexpghayes/distributions3
* Source code: https://github.com/cran/distributions3
* Date/Publication: 2024-09-16 16:20:02 UTC
* Number of recursive dependencies: 88
Run `revdepcheck::cloud_details(, "distributions3")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(distributions3)
Attaching package: 'distributions3'
The following object is masked from 'package:stats':
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-plot.R:50:3'): ggplot2 implementation works ──────────────────
`print(gg1)` produced warnings.
── Failure ('test-plot.R:56:3'): ggplot2 implementation works ──────────────────
`print(gg3)` produced warnings.
[ FAIL 2 | WARN 14 | SKIP 0 | PASS 2766 ]
Error: Test failures
Execution halted
```
# dittoViz
* Version: 1.0.3
* GitHub: https://github.com/dtm2451/dittoViz
* Source code: https://github.com/cran/dittoViz
* Date/Publication: 2025-02-25 18:30:02 UTC
* Number of recursive dependencies: 95
Run `revdepcheck::cloud_details(, "dittoViz")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘dittoViz-Ex.R’ failed
The error most likely occurred in:
> ### Name: freqPlot
> ### Title: Plot discrete observation frequencies per sample and per
> ### grouping
> ### Aliases: freqPlot
>
> ### ** Examples
>
...
▆
1. └─dittoViz::freqPlot(...)
2. └─dittoViz::yPlot(...)
3. └─dittoViz:::.yPlot_add_data_y_direction(...)
4. └─ggplot2::geom_violin(draw_quantiles = vlnplot.quantiles)
5. └─ggplot2:::check_numeric(draw_quantiles)
6. └─ggplot2:::check_object(x, is.numeric, what, ..., arg = arg, call = call)
7. └─ggplot2:::stop_input_type(...)
8. └─rlang::abort(message, ..., call = call, arg = arg)
Execution halted
```
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(dittoViz)
Loading required package: ggplot2
> test_check("dittoViz")
Picking joint bandwidth of 11.2
Picking joint bandwidth of 11.2
Picking joint bandwidth of 11.2
...
6. └─dittoViz:::.yPlot_add_data_y_direction(...)
7. └─ggplot2::geom_violin(draw_quantiles = vlnplot.quantiles)
8. └─ggplot2:::check_numeric(draw_quantiles)
9. └─ggplot2:::check_object(x, is.numeric, what, ..., arg = arg, call = call)
10. └─ggplot2:::stop_input_type(...)
11. └─rlang::abort(message, ..., call = call, arg = arg)
[ FAIL 37 | WARN 19 | SKIP 0 | PASS 220 ]
Error: Test failures
Execution halted
```
# duke
* Version: 0.0.3
* GitHub: https://github.com/aidangildea/duke
* Source code: https://github.com/cran/duke
* Date/Publication: 2023-12-15 21:50:16 UTC
* Number of recursive dependencies: 85
Run `revdepcheck::cloud_details(, "duke")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─testthat::expect_equal(ggplot2::layer_data(p3)$fill[9], "#B5B5B5")
[ FAIL 1 | WARN 10 | SKIP 0 | PASS 27 ]
Error: Test failures
Execution halted
```
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘duke.Rmd’ using rmarkdown
```
# easyalluvial
* Version: 0.3.2
* GitHub: https://github.com/erblast/easyalluvial
* Source code: https://github.com/cran/easyalluvial
* Date/Publication: 2023-12-07 13:40:06 UTC
* Number of recursive dependencies: 148
Run `revdepcheck::cloud_details(, "easyalluvial")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(easyalluvial)
>
> test_check("easyalluvial")
[ FAIL 3 | WARN 6 | SKIP 18 | PASS 41 ]
══ Skipped tests (18) ══════════════════════════════════════════════════════════
...
• plot_marginal_histograms/mod-num-num.svg
• plot_marginal_histograms/mod-num-pred-train.svg
• plot_marginal_histograms/plot-hist-long-cat-fill.svg
• plot_marginal_histograms/plot-hist-long-cat.svg
• plot_marginal_histograms/plot-hist-long-num-has-fill.svg
• plot_marginal_histograms/plot-hist-long-num-is-fill.svg
• plot_marginal_histograms/plot-hist-long-num.svg
• plot_marginal_histograms/plot-hist-wide-num.svg
Error: Test failures
Execution halted
```
# easysurv
* Version: 2.0.1
* GitHub: https://github.com/Maple-Health-Group/easysurv
* Source code: https://github.com/cran/easysurv
* Date/Publication: 2024-06-21 10:30:06 UTC
* Number of recursive dependencies: 152
Run `revdepcheck::cloud_details(, "easysurv")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘easysurv-Ex.R’ failed
The error most likely occurred in:
> ### Name: get_km
> ### Title: Generate Kaplan-Meier estimates
> ### Aliases: get_km
>
> ### ** Examples
>
> km_results <- get_km(
...
Poor Poor 228 145 3.101736 0.1772520 2.183562 1.978082 2.619178
Median follow-up
Good 4.452055
Medium 4.712329
Poor 4.115068
Error in .construct_risktable(x, geom_blank.times = NULL, geom_blank.risktable_stats = "{n.risk}", :
argument "risktable_height" is missing, with no default
Calls: ... ggsurvfit_build -> -> .construct_risktable
Execution halted
```
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘easysurv.Rmd’ using rmarkdown
Quitting from easysurv.Rmd:148-157 [km]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in `.construct_risktable()`:
! argument "risktable_height" is missing, with no default
---
Backtrace:
...
Error: processing vignette 'easysurv.Rmd' failed with diagnostics:
argument "risktable_height" is missing, with no default
--- failed re-building ‘easysurv.Rmd’
SUMMARY: processing the following file failed:
‘easysurv.Rmd’
Error: Vignette re-building failed.
Execution halted
```
# ecocbo
* Version: 0.12.0
* GitHub: NA
* Source code: https://github.com/cran/ecocbo
* Date/Publication: 2024-08-21 08:00:02 UTC
* Number of recursive dependencies: 114
Run `revdepcheck::cloud_details(, "ecocbo")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
|======================================================================| 100%
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 26 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-plot_power.R:5:3'): plots are plotted ────────────────────────
plot_power(epiBetaR, n = 4, m = 4, method = "power") has type 'object', not 'list'.
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 26 ]
Error: Test failures
Execution halted
```
# EGM
* Version: 0.1.0
* GitHub: https://github.com/shah-in-boots/EGM
* Source code: https://github.com/cran/EGM
* Date/Publication: 2024-05-23 16:10:05 UTC
* Number of recursive dependencies: 73
Run `revdepcheck::cloud_details(, "EGM")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(EGM)
Loading required package: vctrs
Loading required package: data.table
> EGM::set_wfdb_path("/usr/local/bin")
>
> test_check("EGM")
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-ggm.R:63:2'): theming works ──────────────────────────────────
g$labels$x (`actual`) not equal to "sample" (`expected`).
`actual` is NULL
`expected` is a character vector ('sample')
[ FAIL 1 | WARN 9 | SKIP 19 | PASS 43 ]
Error: Test failures
Execution halted
```
# eks
* Version: 1.1.0
* GitHub: NA
* Source code: https://github.com/cran/eks
* Date/Publication: 2025-05-18 17:30:02 UTC
* Number of recursive dependencies: 78
Run `revdepcheck::cloud_details(, "eks")` for more info
## Newly broken
* checking S3 generic/method consistency ... WARNING
```
ggplot_add:
function(object, plot, ...)
ggplot_add.scale_rem:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
# ENMTools
* Version: 1.1.2
* GitHub: NA
* Source code: https://github.com/cran/ENMTools
* Date/Publication: 2024-01-16 12:50:11 UTC
* Number of recursive dependencies: 284
Run `revdepcheck::cloud_details(, "ENMTools")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ENMTools)
Loading required package: dismo
Loading required package: raster
Loading required package: sp
>
> test_check("ENMTools")
...
`actual`: FALSE
`expected`: TRUE
Backtrace:
▆
1. └─ENMTools (local) expect_enmtools_model(cyreni.glm.raster2) at test_ENMTools.R:249:3
2. └─testthat::expect_true(...) at test_ENMTools.R:66:3
[ FAIL 9 | WARN 0 | SKIP 3 | PASS 167 ]
Error: Test failures
Execution halted
```
# epos
* Version: 1.1
* GitHub: https://github.com/bernd-mueller/epos
* Source code: https://github.com/cran/epos
* Date/Publication: 2024-03-15 10:10:02 UTC
* Number of recursive dependencies: 94
Run `revdepcheck::cloud_details(, "epos")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(epos)
>
> test_check("epos")
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 13 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
[1] 1 - 11 == -10
Backtrace:
▆
1. └─testthat::expect_that(length(tanimotobaseline), equals(11)) at test_createTanimotoBaseline.R:47:3
2. └─testthat (local) condition(object)
3. └─testthat::expect_equal(x, expected, ..., expected.label = label)
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 13 ]
Error: Test failures
Execution halted
```
## In both
* checking dependencies in R code ... NOTE
```
Namespace in Imports field not imported from: ‘testthat’
All declared Imports should be used.
```
* checking data for non-ASCII characters ... NOTE
```
Note: found 15 marked UTF-8 strings
```
# EQUALSTATS
* Version: 0.5.0
* GitHub: NA
* Source code: https://github.com/cran/EQUALSTATS
* Date/Publication: 2024-09-23 08:30:02 UTC
* Number of recursive dependencies: 128
Run `revdepcheck::cloud_details(, "EQUALSTATS")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘EQUALSTATS-Ex.R’ failed
The error most likely occurred in:
> ### Name: function.Survival_Analysis
> ### Title: Perform Survival Analysis
> ### Aliases: function.Survival_Analysis
>
> ### ** Examples
>
> # Create simulated data ####
...
> rv$second_menu_choice <- NA
> rv$entry[[1]] <- "Admission to care home"
> rv$entry[[2]] <- "Follow-up"
> rv$entry[[3]] <- "Treatment"
> # Final function ####
> Results <- function.Survival_Analysis(Predefined_lists, rv)
Error in .construct_risktable(x, geom_blank.times = NULL, geom_blank.risktable_stats = c("{n.risk}", :
argument "risktable_height" is missing, with no default
Calls: function.Survival_Analysis
Execution halted
```
## In both
* checking Rd cross-references ... NOTE
```
Package unavailable to check Rd xrefs: ‘lmerTest’
```
# equatiomatic
* Version: 0.3.6
* GitHub: https://github.com/datalorax/equatiomatic
* Source code: https://github.com/cran/equatiomatic
* Date/Publication: 2025-03-10 16:50:09 UTC
* Number of recursive dependencies: 145
Run `revdepcheck::cloud_details(, "equatiomatic")` for more info
## Newly broken
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘colors.Rmd’ using rmarkdown
--- finished re-building ‘colors.Rmd’
--- re-building ‘equatiomatic.Rmd’ using rmarkdown
--- finished re-building ‘equatiomatic.Rmd’
--- re-building ‘forecast-arima.Rmd’ using rmarkdown
--- finished re-building ‘forecast-arima.Rmd’
--- re-building ‘lme4-lmer.Rmd’ using rmarkdown
--- finished re-building ‘lme4-lmer.Rmd’
--- re-building ‘plotting-integration.Rmd’ using rmarkdown
```
# errors
* Version: 0.4.3
* GitHub: https://github.com/r-quantities/errors
* Source code: https://github.com/cran/errors
* Date/Publication: 2025-01-18 18:10:05 UTC
* Number of recursive dependencies: 65
Run `revdepcheck::cloud_details(, "errors")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘errors-Ex.R’ failed
The error most likely occurred in:
> ### Name: geom_errors
> ### Title: Errorbars for 'errors' objects
> ### Aliases: geom_errors
>
> ### ** Examples
>
> if (requireNamespace("ggplot2", quietly=TRUE)) {
...
23. │ └─self$draw_panel(data, panel_params, coord, width = 0.05, height = 0.05)
24. │ └─errors (local) draw_panel(...)
25. │ ├─base::append(...)
26. │ └─ggplot2::GeomErrorbarh$draw_panel(...)
27. └─base::.handleSimpleError(...)
28. └─rlang (local) h(simpleError(msg, call))
29. └─handlers[[1L]](cnd)
30. └─cli::cli_abort(...)
31. └─rlang::abort(...)
Execution halted
```
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
...
--- re-building ‘rjournal.Rmd’ using rmarkdown
Quitting from rjournal.Rmd:252-272 [plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rjournal.Rmd' failed with diagnostics:
...
ℹ Error occurred in the 2nd layer.
Caused by error in `draw_panel()`:
! unused argument (height = NULL)
--- failed re-building ‘rjournal.Rmd’
SUMMARY: processing the following file failed:
‘rjournal.Rmd’
Error: Vignette re-building failed.
Execution halted
```
## Newly fixed
* checking re-building of vignette outputs ... WARNING
```
Error(s) in re-building vignettes:
...
--- re-building ‘rjournal.Rmd’ using rmarkdown
tlmgr: Remote database at https://mirrors.mit.edu/CTAN/systems/texlive/tlnet
(revision 75567 of the texlive-scripts package)
seems to be older than the local installation
(revision 75579 of texlive-scripts);
please use a different mirror and/or wait a day or two.
...
Error: processing vignette 'rjournal.Rmd' failed with diagnostics:
LaTeX failed to compile /tmp/workdir/errors/old/errors.Rcheck/vign_test/errors/vignettes/rjournal.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See rjournal.log for more info.
--- failed re-building ‘rjournal.Rmd’
SUMMARY: processing the following file failed:
‘rjournal.Rmd’
Error: Vignette re-building failed.
Execution halted
```
# eventstudyr
* Version: 1.1.3
* GitHub: https://github.com/JMSLab/eventstudyr
* Source code: https://github.com/cran/eventstudyr
* Date/Publication: 2024-03-04 15:00:02 UTC
* Number of recursive dependencies: 97
Run `revdepcheck::cloud_details(, "eventstudyr")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(eventstudyr)
>
> test_check("eventstudyr")
Defaulting to strongest lead of differenced policy variable: proxyIV = z_fd_lead3. To specify a different proxyIV use the proxyIV argument.
Defaulting to strongest lead of differenced policy variable: proxyIV = z_fd_lead3. To specify a different proxyIV use the proxyIV argument.
Defaulting to strongest lead of differenced policy variable: proxyIV = z_fd_lead3. To specify a different proxyIV use the proxyIV argument.
...
`expected` is a character vector ('ci_lower')
── Failure ('test-EventStudyPlot.R:128:5'): confidence intervals are appropriately present or absent ──
p_ci$labels$ymax (`actual`) not equal to "ci_upper" (`expected`).
`actual` is NULL
`expected` is a character vector ('ci_upper')
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 258 ]
Error: Test failures
Execution halted
```
# ez
* Version: 4.4-0
* GitHub: https://github.com/mike-lawrence/ez
* Source code: https://github.com/cran/ez
* Date/Publication: 2016-11-02 18:17:31
* Number of recursive dependencies: 62
Run `revdepcheck::cloud_details(, "ez")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘ez-Ex.R’ failed
The error most likely occurred in:
> ### Name: ezPlot
> ### Title: Plot data from a factorial experiment
> ### Aliases: ezPlot
>
> ### ** Examples
>
> #Read in the ANT data (see ?ANT).
...
Backtrace:
▆
1. └─ez::ezPlot(...)
2. ├─base::eval(parse(text = p))
3. │ └─base::eval(parse(text = p))
4. └─ggplot2::facet_grid(facets = . ~ group, scales = "free_y")
5. └─lifecycle::deprecate_stop("2.2.0", "facet_grid(facets)", "facet_grid(rows)")
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
Execution halted
```
## In both
* checking Rd files ... NOTE
```
checkRd: (-1) ez-package.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ez-package.Rd:33: Lost braces in \itemize; meant \describe ?
```
# ezEDA
* Version: 0.1.1
* GitHub: https://github.com/kviswana/ezEDA
* Source code: https://github.com/cran/ezEDA
* Date/Publication: 2021-06-29 04:40:10 UTC
* Number of recursive dependencies: 76
Run `revdepcheck::cloud_details(, "ezEDA")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ezEDA)
>
> test_check("ezEDA")
[ FAIL 22 | WARN 0 | SKIP 0 | PASS 57 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
── Error ('test_two_measures_relationship.R:19:3'): y axis is labeled 'hwy' ────
Error in `expect_match(p$labels$y, "hwy")`: is.character(act$val) is not TRUE
Backtrace:
▆
1. └─testthat::expect_match(p$labels$y, "hwy") at test_two_measures_relationship.R:19:3
2. └─base::stopifnot(is.character(act$val))
[ FAIL 22 | WARN 0 | SKIP 0 | PASS 57 ]
Error: Test failures
Execution halted
```
# ezplot
* Version: 0.7.13
* GitHub: NA
* Source code: https://github.com/cran/ezplot
* Date/Publication: 2024-01-28 11:30:05 UTC
* Number of recursive dependencies: 105
Run `revdepcheck::cloud_details(, "ezplot")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘ezplot-Ex.R’ failed
The error most likely occurred in:
> ### Name: variable_plot
> ### Title: variable_plot
> ### Aliases: variable_plot
>
> ### ** Examples
>
> suppressPackageStartupMessages(library(tsibble))
> library(tsibbledata)
> variable_plot(ansett, "Week", "Passengers", facet_x = "Class", yoy = TRUE)
Error: object properties are invalid:
- @linewidth must be , , or , not
Execution halted
```
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ezplot)
> suppressPackageStartupMessages(library(tsibble))
>
> test_check("ezplot")
[ FAIL 2 | WARN 6 | SKIP 0 | PASS 90 ]
...
2. ├─ggplot2::theme(...)
3. │ └─ggplot2:::find_args(..., complete = NULL, validate = NULL)
4. │ └─base::mget(args, envir = env)
5. └─ggplot2::element_rect(fill = NA, colour = NA, linewidth = NA)
6. └─S7::new_object(...)
7. └─S7::validate(object, recursive = !parent_validated)
[ FAIL 2 | WARN 6 | SKIP 0 | PASS 90 ]
Error: Test failures
Execution halted
```
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘bar_plot.Rmd’ using rmarkdown
```
# fabletools
* Version: 0.5.0
* GitHub: https://github.com/tidyverts/fabletools
* Source code: https://github.com/cran/fabletools
* Date/Publication: 2024-09-17 07:30:02 UTC
* Number of recursive dependencies: 104
Run `revdepcheck::cloud_details(, "fabletools")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(dplyr)
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
...
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-graphics.R:327:3'): autoplot_dcmp_ts() ───────────────────────
`print(p)` produced messages.
── Failure ('test-graphics.R:346:3'): autoplot_dcmp_ts() ───────────────────────
`print(p)` produced messages.
[ FAIL 2 | WARN 0 | SKIP 1 | PASS 292 ]
Error: Test failures
Execution halted
```
# fairmodels
* Version: 1.2.1
* GitHub: https://github.com/ModelOriented/fairmodels
* Source code: https://github.com/cran/fairmodels
* Date/Publication: 2022-08-23 19:50:06 UTC
* Number of recursive dependencies: 83
Run `revdepcheck::cloud_details(, "fairmodels")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘fairmodels-Ex.R’ failed
The error most likely occurred in:
> ### Name: fairness_heatmap
> ### Title: Fairness heatmap
> ### Aliases: fairness_heatmap
>
> ### ** Examples
>
>
...
[32m Fairness object created succesfully [39m
>
>
> fh <- fairness_heatmap(fobject)
>
> plot(fh)
Error in rep(yes, length.out = len) :
attempt to replicate an object of type 'object'
Calls: plot -> plot.fairness_heatmap -> ifelse
Execution halted
```
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(fairmodels)
>
>
> test_check("fairmodels")
Welcome to DALEX (version: 2.4.3).
Find examples and detailed introduction at: http://ema.drwhy.ai/
...
5. │ └─base::class(object) %in% class
6. ├─fairmodels::plot_fairmodels(fc, type = "fairness_heatmap")
7. └─fairmodels:::plot_fairmodels.fairness_object(fc, type = "fairness_heatmap")
8. └─fairmodels:::plot_fairmodels.default(x, type, ...)
9. └─fairmodels:::plot.fairness_heatmap(fairness_heatmap(x, ...))
10. └─base::ifelse(...)
[ FAIL 3 | WARN 2 | SKIP 0 | PASS 299 ]
Error: Test failures
Execution halted
```
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘Advanced_tutorial.Rmd’ using rmarkdown
```
## In both
* checking Rd files ... NOTE
```
checkRd: (-1) choose_metric.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) choose_metric.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) choose_metric.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) confusion_matrx.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) confusion_matrx.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) confusion_matrx.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) confusion_matrx.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) disparate_impact_remover.Rd:28: Lost braces
28 | pigeonholing. The number of pigeonholes is fixed and equal to min{101, unique(a)}, where a is vector with values for subgroup. So if some subgroup is not numerous and
| ^
...
checkRd: (-1) group_metric.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) group_metric.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) group_metric.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) group_metric.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) metric_scores.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) metric_scores.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) performance_and_fairness.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) performance_and_fairness.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) performance_and_fairness.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) performance_and_fairness.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
```
# fairness
* Version: 1.2.2
* GitHub: https://github.com/kozodoi/fairness
* Source code: https://github.com/cran/fairness
* Date/Publication: 2021-04-14 15:00:02 UTC
* Number of recursive dependencies: 149
Run `revdepcheck::cloud_details(, "fairness")` for more info
## Newly broken
* checking whether package ‘fairness’ can be installed ... WARNING
```
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘fairness’
See ‘/tmp/workdir/fairness/new/fairness.Rcheck/00install.out’ for details.
```
# faux
* Version: 1.2.2
* GitHub: https://github.com/debruine/faux
* Source code: https://github.com/cran/faux
* Date/Publication: 2025-01-15 09:10:01 UTC
* Number of recursive dependencies: 127
Run `revdepcheck::cloud_details(, "faux")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘faux-Ex.R’ failed
The error most likely occurred in:
> ### Name: norm2likert
> ### Title: Convert normal to likert
> ### Aliases: norm2likert
>
> ### ** Examples
>
>
...
2. └─plt$build()
3. └─private$addLimits(margThemed)
4. └─ggplot2::scale_x_continuous(limits = limits, oob = scales::squish)
5. └─ggplot2::continuous_scale(...)
6. └─ggplot2:::check_continuous_limits(limits, call = call)
7. └─ggplot2:::check_numeric(limits, arg = arg, call = call, allow_na = TRUE)
8. └─ggplot2:::check_object(x, is.numeric, what, ..., arg = arg, call = call)
9. └─ggplot2:::stop_input_type(...)
10. └─rlang::abort(message, ..., call = call, arg = arg)
Execution halted
```
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(faux)
************
Welcome to faux. For support and examples visit:
https://debruine.github.io/faux/
- Get and set global package options with: faux_options()
...
class(p) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
Backtrace:
▆
1. └─global expect_equal(class(p), c("gg", "ggplot")) at test-plot_design.R:288:3
2. └─testthat::expect_equal(..., check.environment = FALSE)
[ FAIL 19 | WARN 0 | SKIP 22 | PASS 1351 ]
Error: Test failures
Execution halted
```
# feasts
* Version: 0.4.1
* GitHub: https://github.com/tidyverts/feasts
* Source code: https://github.com/cran/feasts
* Date/Publication: 2024-09-25 23:40:02 UTC
* Number of recursive dependencies: 97
Run `revdepcheck::cloud_details(, "feasts")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(feasts)
Loading required package: fabletools
>
> test_check("feasts")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 101 ]
...
▆
1. ├─ggplot2::ggplot_build(p[[1]]) at test-graphics.R:194:3
2. ├─ggplot2:::ggplot_build.default(p[[1]])
3. │ └─ggplot2::build_ggplot(plot)
4. │ └─S7::S7_dispatch()
5. └─S7:::method_lookup_error("build_ggplot", ``)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 101 ]
Error: Test failures
Execution halted
```
# fec16
* Version: 0.1.4
* GitHub: https://github.com/baumer-lab/fec16
* Source code: https://github.com/cran/fec16
* Date/Publication: 2023-08-09 10:50:14 UTC
* Number of recursive dependencies: 91
Run `revdepcheck::cloud_details(, "fec16")` for more info
## Newly broken
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘fec_vignette.Rmd’ using rmarkdown
```
## In both
* checking data for non-ASCII characters ... NOTE
```
Note: found 20 marked UTF-8 strings
```
# flextable
* Version: 0.9.9
* GitHub: https://github.com/davidgohel/flextable
* Source code: https://github.com/cran/flextable
* Date/Publication: 2025-05-31 09:40:02 UTC
* Number of recursive dependencies: 131
Run `revdepcheck::cloud_details(, "flextable")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘flextable-Ex.R’ failed
The error most likely occurred in:
> ### Name: gg_chunk
> ### Title: 'ggplots' chunk wrapper
> ### Aliases: gg_chunk
>
> ### ** Examples
>
> library(data.table)
...
Loading required package: ggplot2
a flextable object.
col_keys: `Species`, `gg`
header has 1 row(s)
body has 3 row(s)
original dataset sample:
Error in format.default(unlist(xx), ...) :
c("Found no format() method for class \"ggplot2::ggplot\"", "Found no format() method for class \"ggplot\"", "Found no format() method for class \"ggplot2::gg\"", "Found no format() method for class \"S7_object\"", "Found no format() method for class \"gg\"")
Calls: ... format -> format.default -> lapply -> FUN -> format.default
Execution halted
```
# fmf
* Version: 1.1.1
* GitHub: NA
* Source code: https://github.com/cran/fmf
* Date/Publication: 2020-09-03 07:32:12 UTC
* Number of recursive dependencies: 175
Run `revdepcheck::cloud_details(, "fmf")` for more info
## Newly broken
* checking whether package ‘fmf’ can be installed ... WARNING
```
Found the following significant warnings:
Warning: replacing previous import ‘e1071::element’ by ‘ggplot2::element’ when loading ‘fmf’
See ‘/tmp/workdir/fmf/new/fmf.Rcheck/00install.out’ for details.
```
## In both
* checking C++ specification ... NOTE
```
Specified C++11: please drop specification unless essential
```
# forestPSD
* Version: 1.0.0
* GitHub: NA
* Source code: https://github.com/cran/forestPSD
* Date/Publication: 2024-11-11 16:50:05 UTC
* Number of recursive dependencies: 44
Run `revdepcheck::cloud_details(, "forestPSD")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘forestPSD-Ex.R’ failed
The error most likely occurred in:
> ### Name: psdfun
> ### Title: Regression analysis for survival curves.
> ### Aliases: psdfun
>
> ### ** Examples
>
> data(Npop)
...
16. │ └─l$compute_geom_2(d, theme = plot@theme)
17. │ └─ggplot2 (local) compute_geom_2(..., self = self)
18. │ └─self$geom$use_defaults(...)
19. │ └─ggplot2 (local) use_defaults(..., self = self)
20. │ └─ggplot2:::check_aesthetics(new_params, nrow(data))
21. │ └─vctrs::list_sizes(x)
22. └─vctrs:::stop_scalar_type(``(``), "x$label", ``)
23. └─vctrs:::stop_vctrs(...)
24. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
Execution halted
```
## In both
* checking dependencies in R code ... NOTE
```
Namespaces in Imports field not imported from:
‘ggplot2’ ‘reshape2’
All declared Imports should be used.
```
# FunnelPlotR
* Version: 0.5.0
* GitHub: https://github.com/nhs-r-community/FunnelPlotR
* Source code: https://github.com/cran/FunnelPlotR
* Date/Publication: 2024-04-12 08:40:02 UTC
* Number of recursive dependencies: 81
Run `revdepcheck::cloud_details(, "FunnelPlotR")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘FunnelPlotR-Ex.R’ failed
The error most likely occurred in:
> ### Name: funnel_plot
> ### Title: Funnel plots for comparing institutional performance
> ### Aliases: funnel_plot
>
> ### ** Examples
>
> # We will use the 'medpar' dataset from the 'COUNT' package.
...
>
> # Get predicted values for building ratio
> medpar$prds<- predict(mod, type="response")
>
> # Draw plot, returning just the plot object
> fp<-funnel_plot(medpar, denominator=prds, numerator=los,
+ group = provnum, limit=95, title="An example funnel plot")
Error in validate_funnel_plot(rtn) : Invalid ggplot object
Calls: funnel_plot -> validate_funnel_plot
Execution halted
```
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(FunnelPlotR)
>
> test_check("FunnelPlotR")
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 34 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
── Error ('test-funnel_plot.R:7:3'): `funnel_plot()` works with input and returns expected list ──
Error in `validate_funnel_plot(rtn)`: Invalid ggplot object
Backtrace:
▆
1. └─FunnelPlotR::funnel_plot(dt, num, denom, group) at test-funnel_plot.R:7:3
2. └─FunnelPlotR:::validate_funnel_plot(rtn)
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 34 ]
Error: Test failures
Execution halted
```
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘changing_funnel_plot_options.Rmd’ using rmarkdown
Quitting from changing_funnel_plot_options.Rmd:32-49 [dtsetup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in `validate_funnel_plot()`:
! Invalid ggplot object
---
Backtrace:
...
▆
1. └─FunnelPlotR::funnel_plot(...)
2. └─FunnelPlotR:::validate_funnel_plot(rtn)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'changing_funnel_plot_options.Rmd' failed with diagnostics:
Invalid ggplot object
--- failed re-building ‘changing_funnel_plot_options.Rmd’
--- re-building ‘funnel_plots.Rmd’ using rmarkdown
```
# gapfill
* Version: 0.9.6-1
* GitHub: https://github.com/florafauna/gapfill
* Source code: https://github.com/cran/gapfill
* Date/Publication: 2021-02-12 10:10:05 UTC
* Number of recursive dependencies: 67
Run `revdepcheck::cloud_details(, "gapfill")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘run-all.R’
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
> library(testthat)
> test_check('gapfill')
Loading required package: gapfill
Loading required package: ggplot2
--> See ?Gapfill and https://doi.org/10.1109/TGRS.2017.2785240 <--
[ FAIL 5 | WARN 6 | SKIP 0 | PASS 870 ]
...
── Failure ('test-Image.R:10:4'): Image ────────────────────────────────────────
class(Image(unname(ndvi))) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
── Failure ('test-Image.R:11:4'): Image ────────────────────────────────────────
class(Image(ndvi, zlim = c(1, 2))) not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
[ FAIL 5 | WARN 6 | SKIP 0 | PASS 870 ]
Error: Test failures
Execution halted
```
## In both
* checking package dependencies ... NOTE
```
Packages which this enhances but not available for checking:
'raster', 'doParallel', 'doMPI'
```
* checking Rd files ... NOTE
```
checkRd: (-1) Gapfill.Rd:66-68: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:69-70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:71-77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) Gapfill.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ndvi.Rd:10: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ndvi.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ndvi.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) ndvi.Rd:13: Lost braces in \itemize; meant \describe ?
```
# genekitr
* Version: 1.2.8
* GitHub: https://github.com/GangLiLab/genekitr
* Source code: https://github.com/cran/genekitr
* Date/Publication: 2024-09-06 13:00:06 UTC
* Number of recursive dependencies: 196
Run `revdepcheck::cloud_details(, "genekitr")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘genekitr-Ex.R’ failed
The error most likely occurred in:
> ### Name: plotVenn
> ### Title: Venn plot for groups of genes
> ### Aliases: plotVenn
>
> ### ** Examples
>
> k1 = requireNamespace("ComplexUpset",quietly = TRUE)
...
32. │ └─ggplot2 (local) `method(merge_element, list(ggplot2::element, class_any))`(...)
33. │ └─S7::props(old, idx)
34. │ └─S7::check_is_S7(object)
35. │ └─base::stop(msg, call. = FALSE)
36. └─base::.handleSimpleError(...)
37. └─rlang (local) h(simpleError(msg, call))
38. └─handlers[[1L]](cnd)
39. └─cli::cli_abort(...)
40. └─rlang::abort(...)
Execution halted
```
# geneSLOPE
* Version: 0.38.3
* GitHub: https://github.com/psobczyk/geneSLOPE
* Source code: https://github.com/cran/geneSLOPE
* Date/Publication: 2025-06-20 04:40:02 UTC
* Number of recursive dependencies: 76
Run `revdepcheck::cloud_details(, "geneSLOPE")` for more info
## Newly broken
* checking whether package ‘geneSLOPE’ can be installed ... WARNING
```
Found the following significant warnings:
Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
See ‘/tmp/workdir/geneSLOPE/new/geneSLOPE.Rcheck/00install.out’ for details.
```
# geofacet
* Version: 0.2.1
* GitHub: https://github.com/hafen/geofacet
* Source code: https://github.com/cran/geofacet
* Date/Publication: 2023-11-30 08:00:11 UTC
* Number of recursive dependencies: 93
Run `revdepcheck::cloud_details(, "geofacet")` for more info
## Newly broken
* checking S3 generic/method consistency ... WARNING
```
ggplot_add:
function(object, plot, ...)
ggplot_add.facet_geo_spec:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
## In both
* checking data for non-ASCII characters ... NOTE
```
Note: found 646 marked UTF-8 strings
```
# geomtextpath
* Version: 0.1.5
* GitHub: https://github.com/AllanCameron/geomtextpath
* Source code: https://github.com/cran/geomtextpath
* Date/Publication: 2025-01-14 17:40:02 UTC
* Number of recursive dependencies: 91
Run `revdepcheck::cloud_details(, "geomtextpath")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘geomtextpath-Ex.R’ failed
The error most likely occurred in:
> ### Name: geom_textsf
> ### Title: Visualise sf objects with labels
> ### Aliases: geom_textsf geom_labelsf
>
> ### ** Examples
>
> ggplot(waterways) +
...
22. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
23. │ └─self$draw_panel(...)
24. │ └─geomtextpath (local) draw_panel(...)
25. │ └─geomtextpath:::sf_textgrob(...)
26. └─base::.handleSimpleError(...)
27. └─rlang (local) h(simpleError(msg, call))
28. └─handlers[[1L]](cnd)
29. └─cli::cli_abort(...)
30. └─rlang::abort(...)
Execution halted
```
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(geomtextpath)
Loading required package: ggplot2
>
> test_check("geomtextpath")
[ FAIL 2 | WARN 0 | SKIP 4 | PASS 462 ]
...
`expected` is an expression vector
── Error ('test-sf.R:91:3'): We can make grobs from sf features ────────────────
Error in `(x$boxlinewidth %||% defaults$linewidth[type_ind]) * 3.779528`: non-numeric argument to binary operator
Backtrace:
▆
1. └─geomtextpath:::sf_textgrob(river, as_textbox = TRUE) at test-sf.R:91:3
[ FAIL 2 | WARN 0 | SKIP 4 | PASS 462 ]
Error: Test failures
Execution halted
```
# gfoRmulaICE
* Version: 0.1.0
* GitHub: NA
* Source code: https://github.com/cran/gfoRmulaICE
* Date/Publication: 2024-12-02 12:50:08 UTC
* Number of recursive dependencies: 89
Run `revdepcheck::cloud_details(, "gfoRmulaICE")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
`expected[2:2]`: "ggplot"
── Failure ('test_plot.R:534:5'): plot complicated scenario 3 - intervention-specific time options ──
class(plots) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 15 | WARN 176 | SKIP 0 | PASS 47 ]
Error: Test failures
Execution halted
```
# gg1d
* Version: 0.1.0
* GitHub: https://github.com/selkamand/gg1d
* Source code: https://github.com/cran/gg1d
* Date/Publication: 2024-12-09 19:40:02 UTC
* Number of recursive dependencies: 87
Run `revdepcheck::cloud_details(, "gg1d")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘gg1d-Ex.R’ failed
The error most likely occurred in:
> ### Name: gg1d
> ### Title: AutoPlot an entire data.frame
> ### Aliases: gg1d
>
> ### ** Examples
>
> path_gg1d <- system.file("example.csv", package = "gg1d")
...
31. │ └─base::lapply(...)
32. │ └─ggplot2 (local) FUN(X[[i]], ...)
33. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
34. │ └─self$draw_panel(...)
35. └─base::.handleSimpleError(...)
36. └─rlang (local) h(simpleError(msg, call))
37. └─handlers[[1L]](cnd)
38. └─cli::cli_abort(...)
39. └─rlang::abort(...)
Execution halted
```
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
Expected `gg1d(...)` to run without any errors.
i Actually got a with text:
Problem while converting geom to grob.
i Error occurred in the 1st layer.
Caused by error in `draw_panel()`:
! unused arguments (lineend = "butt", linejoin = "mitre")
[ FAIL 9 | WARN 1 | SKIP 2 | PASS 47 ]
Error: Test failures
Execution halted
```
# ggalign
* Version: 1.0.2
* GitHub: https://github.com/Yunuuuu/ggalign
* Source code: https://github.com/cran/ggalign
* Date/Publication: 2025-05-14 14:00:08 UTC
* Number of recursive dependencies: 56
Run `revdepcheck::cloud_details(, "ggalign")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘ggalign-Ex.R’ failed
The error most likely occurred in:
> ### Name: align_dendro
> ### Title: Plot dendrogram tree
> ### Aliases: align_dendro
>
> ### ** Examples
>
> # align_dendro will always add a plot area
...
37. │ ├─S7::S7_dispatch()
38. │ └─ggplot2 (local) `method(+, list(ggplot2::ggplot, class_any))`(...)
39. │ └─ggplot2:::add_ggplot(e1, e2, e2name)
40. │ ├─ggplot2::ggplot_add(object, p, objectname)
41. │ └─ggalign:::ggplot_add.ggalign_design(object, p, objectname)
42. └─base::.handleSimpleError(...)
43. └─rlang (local) h(simpleError(msg, call))
44. └─handlers[[1L]](cnd)
45. └─rlang::cnd_signal(e)
Execution halted
```
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
• plot-align/reorder-left-reverse.svg
• plot-align/reorder-left.svg
• plot-align/reorder-right.svg
• plot-align/reorder-top-reverse.svg
• plot-align/reorder-top-within-group.svg
• plot-align/reorder-top.svg
• plot-align/stack-no-data-dendrogram-input.svg
• plot-align/stack-no-data-hclust-input.svg
Error: Test failures
Execution halted
```
* checking S3 generic/method consistency ... WARNING
```
ggplot_add:
function(object, plot, ...)
ggplot_add.ggalign_default_expansion:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.FacetSector:
function(object, plot, object_name)
...
function(plot, ...)
ggplot_build.ggalign_facet_sector_plot:
function(plot)
ggplot_build:
function(plot, ...)
ggplot_build.ggalign_heatmap:
function(plot)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
* checking Rd cross-references ... WARNING
```
Packages unavailable to check Rd xrefs: ‘ape’, ‘patchwork’, ‘maftools’, ‘ComplexHeatmap’, ‘pheatmap’
Missing link or links in Rd file 'scheme_theme.Rd':
‘[ggplot2:+.gg]{+.gg()}’
See section 'Cross-references' in the 'Writing R Extensions' manual.
```
* checking for code/documentation mismatches ... WARNING
```
Codoc mismatches from Rd file 'scheme_theme.Rd':
scheme_theme
Code: function(..., line, rect, text, title, point, polygon, geom,
spacing, margins, aspect.ratio, axis.title,
axis.title.x, axis.title.x.top, axis.title.x.bottom,
axis.title.y, axis.title.y.left, axis.title.y.right,
axis.text, axis.text.x, axis.text.x.top,
axis.text.x.bottom, axis.text.y, axis.text.y.left,
axis.text.y.right, axis.text.theta, axis.text.r,
axis.ticks, axis.ticks.x, axis.ticks.x.top,
...
strip.text.y.right, strip.switch.pad.grid,
strip.switch.pad.wrap, complete = FALSE, validate =
TRUE)
Argument names in code not in docs:
point polygon geom spacing margins legend.key.justification
panel.widths panel.heights
Mismatches in argument names (first 3):
Position: 6 Code: point Docs: aspect.ratio
Position: 7 Code: polygon Docs: axis.title
Position: 8 Code: geom Docs: axis.title.x
```
## Newly fixed
* checking Rd cross-references ... NOTE
```
Packages unavailable to check Rd xrefs: ‘ape’, ‘patchwork’, ‘maftools’, ‘ComplexHeatmap’, ‘pheatmap’
```
## In both
* checking package dependencies ... NOTE
```
Packages which this enhances but not available for checking:
'patchwork', 'ggrastr', 'maftools'
```
# GGally
* Version: 2.2.1
* GitHub: https://github.com/ggobi/ggally
* Source code: https://github.com/cran/GGally
* Date/Publication: 2024-02-14 00:53:32 UTC
* Number of recursive dependencies: 142
Run `revdepcheck::cloud_details(, "GGally")` for more info
## Newly broken
* checking whether package ‘GGally’ can be installed ... ERROR
```
Installation failed.
See ‘/tmp/workdir/GGally/new/GGally.Rcheck/00install.out’ for details.
```
## Installation
### Devel
```
* installing *source* package ‘GGally’ ...
** package ‘GGally’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in eval(exprs[i], envir) : object 'is.rel' not found
Error: unable to load R code in package ‘GGally’
Execution halted
ERROR: lazy loading failed for package ‘GGally’
* removing ‘/tmp/workdir/GGally/new/GGally.Rcheck/GGally’
```
### CRAN
```
* installing *source* package ‘GGally’ ...
** package ‘GGally’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GGally)
```
# ggblend
* Version: 0.1.0
* GitHub: https://github.com/mjskay/ggblend
* Source code: https://github.com/cran/ggblend
* Date/Publication: 2023-05-22 08:30:05 UTC
* Number of recursive dependencies: 59
Run `revdepcheck::cloud_details(, "ggblend")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggblend)
>
> test_check("ggblend")
[ FAIL 3 | WARN 2 | SKIP 7 | PASS 99 ]
══ Skipped tests (7) ═══════════════════════════════════════════════════════════
...
`actual$mapping` is an S3 object of class , a list
`expected$mapping` is an S7 object of class
Backtrace:
▆
1. └─ggblend:::expect_equal_layer(...) at test-operation-adjust.R:19:3
2. └─testthat::expect_equal(...) at tests/testthat/helper-layer.R:26:3
[ FAIL 3 | WARN 2 | SKIP 7 | PASS 99 ]
Error: Test failures
Execution halted
```
# ggborderline
* Version: 0.2.0
* GitHub: https://github.com/wurli/ggborderline
* Source code: https://github.com/cran/ggborderline
* Date/Publication: 2022-10-25 13:45:14 UTC
* Number of recursive dependencies: 42
Run `revdepcheck::cloud_details(, "ggborderline")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘ggborderline-Ex.R’ failed
The error most likely occurred in:
> ### Name: geom_borderpath
> ### Title: Connect observations
> ### Aliases: geom_borderpath geom_borderline geom_borderstep
>
> ### ** Examples
>
> require(ggplot2)
...
5. └─ggplot2::build_ggplot(plot)
6. ├─S7::S7_dispatch()
7. └─ggplot2 (local) `method(build_ggplot, ggplot2::ggplot)`(...)
8. └─npscales$set_palettes(plot@theme)
9. └─ggplot2 (local) set_palettes(..., self = self)
10. ├─scales::as_discrete_pal(elem)
11. └─scales:::as_discrete_pal.default(elem)
12. └─cli::cli_abort("Cannot convert {.arg x} to a discrete palette.")
13. └─rlang::abort(...)
Execution halted
```
# ggbrain
* Version: 0.9.0
* GitHub: https://github.com/michaelhallquist/ggbrain
* Source code: https://github.com/cran/ggbrain
* Date/Publication: 2025-03-20 01:30:02 UTC
* Number of recursive dependencies: 71
Run `revdepcheck::cloud_details(, "ggbrain")` for more info
## Newly broken
* checking S3 generic/method consistency ... WARNING
```
ggplot_add:
function(object, plot, ...)
ggplot_add.ggbrain_panel:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.ggbrain_label:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.ggbrain_layer:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
## In both
* checking installed package size ... NOTE
```
installed size is 10.1Mb
sub-directories of 1Mb or more:
doc 1.6Mb
extdata 2.2Mb
libs 5.5Mb
```
# ggbreak
* Version: 0.1.4
* GitHub: https://github.com/YuLab-SMU/ggbreak
* Source code: https://github.com/cran/ggbreak
* Date/Publication: 2025-02-04 17:50:10 UTC
* Number of recursive dependencies: 61
Run `revdepcheck::cloud_details(, "ggbreak")` for more info
## Newly broken
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘ggbreak.Rmd’ using rmarkdown
Quitting from ggbreak.Rmd:61-78 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in `UseMethod()`:
! no applicable method for 'as.grob' applied to an object of class "c('LayerInstance', 'Layer', 'ggproto', 'gg')"
---
Backtrace:
...
Error: processing vignette 'ggbreak.Rmd' failed with diagnostics:
no applicable method for 'as.grob' applied to an object of class "c('LayerInstance', 'Layer', 'ggproto', 'gg')"
--- failed re-building ‘ggbreak.Rmd’
SUMMARY: processing the following file failed:
‘ggbreak.Rmd’
Error: Vignette re-building failed.
Execution halted
```
* checking S3 generic/method consistency ... WARNING
```
ggplot_add:
function(object, plot, ...)
ggplot_add.wrap_params:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.ggcut_params:
function(object, plot, object_name)
...
function(object, plot, ...)
ggplot_add.ggbreak:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.gg:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
# ggbump
* Version: 0.1.0
* GitHub: NA
* Source code: https://github.com/cran/ggbump
* Date/Publication: 2020-04-24 16:00:02 UTC
* Number of recursive dependencies: 50
Run `revdepcheck::cloud_details(, "ggbump")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggbump)
>
> test_check("ggbump")
[ FAIL 3 | WARN 1 | SKIP 0 | PASS 1 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
── Failure ('test-numeric_inputs.R:21:3'): multiplication works ────────────────
... %>% class() not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
── Failure ('test-numeric_inputs.R:26:3'): multiplication works ────────────────
... %>% class() not equal to c("gg", "ggplot").
Lengths differ: 5 is not 2
[ FAIL 3 | WARN 1 | SKIP 0 | PASS 1 ]
Error: Test failures
Execution halted
```
## In both
* checking LazyData ... NOTE
```
'LazyData' is specified without a 'data' directory
```
# ggdark
* Version: 0.2.1
* GitHub: NA
* Source code: https://github.com/cran/ggdark
* Date/Publication: 2019-01-11 17:30:06 UTC
* Number of recursive dependencies: 42
Run `revdepcheck::cloud_details(, "ggdark")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘ggdark-Ex.R’ failed
The error most likely occurred in:
> ### Name: dark_mode
> ### Title: Activate dark mode on a 'ggplot2' theme
> ### Aliases: dark_mode
>
> ### ** Examples
>
> library(ggplot2)
...
>
> p1 <- ggplot(iris, aes(Sepal.Width, Sepal.Length, color = Species)) +
+ geom_point()
>
> p1 # theme returned by theme_get()
> p1 + dark_mode() # activate dark mode on theme returned by theme_get()
Error in match(x, table, nomatch = 0L) :
'match' requires vector arguments
Calls: dark_mode -> %in%
Execution halted
```
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggdark)
>
> test_check("ggdark")
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
...
── Error ('test_dark_mode.R:10:1'): (code run outside of `test_that()`) ────────
Error in `match(x, table, nomatch = 0L)`: 'match' requires vector arguments
Backtrace:
▆
1. └─ggdark::dark_mode(light_theme) at test_dark_mode.R:10:1
2. └─geoms[["GeomPoint"]]$default_aes$colour %in% ...
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
```
## In both
* checking LazyData ... NOTE
```
'LazyData' is specified without a 'data' directory
```
# ggdemetra
* Version: 0.2.8
* GitHub: https://github.com/AQLT/ggdemetra
* Source code: https://github.com/cran/ggdemetra
* Date/Publication: 2024-02-04 14:50:02 UTC
* Number of recursive dependencies: 51
Run `revdepcheck::cloud_details(, "ggdemetra")` for more info
## Newly broken
* checking whether package ‘ggdemetra’ can be installed ... WARNING
```
Found the following significant warnings:
Warning: `aes_()` was deprecated in ggplot2 3.0.0.
See ‘/tmp/workdir/ggdemetra/new/ggdemetra.Rcheck/00install.out’ for details.
```
# ggDoubleHeat
* Version: 0.1.2
* GitHub: https://github.com/PursuitOfDataScience/ggDoubleHeat
* Source code: https://github.com/cran/ggDoubleHeat
* Date/Publication: 2023-08-24 21:00:04 UTC
* Number of recursive dependencies: 55
Run `revdepcheck::cloud_details(, "ggDoubleHeat")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘ggDoubleHeat-Ex.R’ failed
The error most likely occurred in:
> ### Name: geom_heat_circle
> ### Title: Heatcircle
> ### Aliases: geom_heat_circle
>
> ### ** Examples
>
>
...
+ y = rep(c("d", "e", "f"), 3),
+ outside_values = rep(c(1,5,7),3),
+ inside_values = rep(c(2,3,4),3))
>
> ggplot(data, aes(x,y)) +
+ geom_heat_circle(outside = outside_values,
+ inside = inside_values)
Error in scale_title(title) : object 'outside_values' not found
Calls: ... extract_params -> -> make_title -> scale_title
Execution halted
```
# ggEDA
* Version: 0.1.0
* GitHub: https://github.com/CCICB/ggEDA
* Source code: https://github.com/cran/ggEDA
* Date/Publication: 2025-05-07 12:00:02 UTC
* Number of recursive dependencies: 92
Run `revdepcheck::cloud_details(, "ggEDA")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘ggEDA-Ex.R’ failed
The error most likely occurred in:
> ### Name: ggstack
> ### Title: AutoPlot an entire data.frame
> ### Aliases: ggstack
>
> ### ** Examples
>
>
...
31. │ └─base::lapply(...)
32. │ └─ggplot2 (local) FUN(X[[i]], ...)
33. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
34. │ └─self$draw_panel(...)
35. └─base::.handleSimpleError(...)
36. └─rlang (local) h(simpleError(msg, call))
37. └─handlers[[1L]](cnd)
38. └─cli::cli_abort(...)
39. └─rlang::abort(...)
Execution halted
```
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
...
Expected `ggstack(...)` to run without any errors.
i Actually got a with text:
Problem while converting geom to grob.
i Error occurred in the 1st layer.
Caused by error in `draw_panel()`:
! unused arguments (lineend = "butt", linejoin = "mitre")
[ FAIL 11 | WARN 12 | SKIP 2 | PASS 114 ]
Error: Test failures
Execution halted
```
# ggedit
* Version: 0.4.1
* GitHub: https://github.com/yonicd/ggedit
* Source code: https://github.com/cran/ggedit
* Date/Publication: 2024-03-04 14:40:02 UTC
* Number of recursive dependencies: 91
Run `revdepcheck::cloud_details(, "ggedit")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘ggedit-Ex.R’ failed
The error most likely occurred in:
> ### Name: compare
> ### Title: compare
> ### Aliases: compare
>
> ### ** Examples
>
> compare(ggplot2::theme_bw(),ggplot2::theme_get())
Error in as.vector(x, "list") :
cannot coerce type 'object' to vector of type 'list'
Calls: compare ... themeFetchFull -> lapply -> as.list -> as.list.default
Execution halted
```
# ggfixest
* Version: 0.3.0
* GitHub: https://github.com/grantmcdermott/ggfixest
* Source code: https://github.com/cran/ggfixest
* Date/Publication: 2025-05-14 02:20:02 UTC
* Number of recursive dependencies: 77
Run `revdepcheck::cloud_details(, "ggfixest")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> ## Throttle CPU threads if R CMD check (for CRAN)
>
> if (any(grepl("_R_CHECK", names(Sys.getenv()), fixed = TRUE))) {
+ # fixest
+ if (requireNamespace("fixest", quietly = TRUE)) {
+ library(fixest)
+ setFixest_nthreads(1)
...
call| expect_snapshot_plot(p19a, label = "ggiplot_multi_complex_kitchen_iid")
diff| 1774
info| Diff plot saved to: _tinysnapshot_review/ggiplot_multi_complex_kitchen_iid.png
----- FAILED[]: test_ggiplot.R<193--193>
call| expect_snapshot_plot(p19b, label = "ggiplot_multi_complex_kitchen_iid")
diff| 1774
info| Diff plot saved to: _tinysnapshot_review/ggiplot_multi_complex_kitchen_iid.png
Error: 5 out of 111 tests failed
In addition: There were 11 warnings (use warnings() to see them)
Execution halted
```
# ggfocus
* Version: 1.0.0
* GitHub: https://github.com/Freguglia/ggfocus
* Source code: https://github.com/cran/ggfocus
* Date/Publication: 2020-01-23 13:20:02 UTC
* Number of recursive dependencies: 52
Run `revdepcheck::cloud_details(, "ggfocus")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘ggfocus-Ex.R’ failed
The error most likely occurred in:
> ### Name: ggfocus
> ### Title: (Deprecated) Sets focus scales to an existing 'ggplot' object
> ### Aliases: ggfocus
>
> ### ** Examples
>
> library(ggplot2)
...
> p <- ggplot(iris,aes(x=Sepal.Length,y=Petal.Length)) + geom_point()
> ggfocus(p, Species, "versicolor")
The function 'ggfocus()' is deprecated, consider using the family scale_*_focus() instead.
Warning: `select_()` was deprecated in dplyr 0.7.0.
ℹ Please use `select()` instead.
ℹ The deprecated feature was likely used in the ggfocus package.
Please report the issue at .
Error in scale_title(title) : object 'Species' not found
Calls: ... extract_params -> -> make_title -> scale_title
Execution halted
```
* checking S3 generic/method consistency ... WARNING
```
ggplot_add:
function(object, plot, ...)
ggplot_add.ggfocus_fill:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.ggfocus_shape:
function(object, plot, object_name)
...
function(object, plot, ...)
ggplot_add.ggfocus_size:
function(object, plot, object_name)
ggplot_add:
function(object, plot, ...)
ggplot_add.ggfocus_linetype:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
## In both
* checking LazyData ... NOTE
```
'LazyData' is specified without a 'data' directory
```
# ggformula
* Version: 0.12.0
* GitHub: https://github.com/ProjectMOSAIC/ggformula
* Source code: https://github.com/cran/ggformula
* Date/Publication: 2023-11-09 12:30:07 UTC
* Number of recursive dependencies: 119
Run `revdepcheck::cloud_details(, "ggformula")` for more info
## Newly broken
* checking for code/documentation mismatches ... WARNING
```
Codoc mismatches from Rd file 'gf_lines.Rd':
gf_hline
Code: function(object = NULL, gformula = NULL, data = NULL, ...,
yintercept, color, linetype, linewidth, alpha, xlab,
ylab, title, subtitle, caption, position = "identity",
show.legend = NA, show.help = NULL, inherit = FALSE,
environment = parent.frame())
Docs: function(object = NULL, gformula = NULL, data = NULL, ...,
yintercept, color, linetype, linewidth, alpha, xlab,
ylab, title, subtitle, caption, show.legend = NA,
...
xintercept, color, linetype, linewidth, alpha, xlab,
ylab, title, subtitle, caption, show.legend = NA,
show.help = NULL, inherit = FALSE, environment =
parent.frame())
Argument names in code not in docs:
position
Mismatches in argument names (first 3):
Position: 15 Code: position Docs: show.legend
Position: 16 Code: show.legend Docs: show.help
Position: 17 Code: show.help Docs: inherit
```
## In both
* checking Rd cross-references ... NOTE
```
Packages unavailable to check Rd xrefs: ‘akima’, ‘ggforce’
```
# ggfortify
* Version: 0.4.17
* GitHub: https://github.com/sinhrks/ggfortify
* Source code: https://github.com/cran/ggfortify
* Date/Publication: 2024-04-17 04:30:04 UTC
* Number of recursive dependencies: 121
Run `revdepcheck::cloud_details(, "ggfortify")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘test-all.R’
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
>
> suppressWarnings(RNGversion("3.5.0"))
> set.seed(1, sample.kind = "Rejection")
>
> test_check('ggfortify')
Loading required package: ggfortify
...
x[3]: "#595959FF"
y[3]: "grey35"
x[4]: "#595959FF"
y[4]: "grey35"
[ FAIL 5 | WARN 13 | SKIP 48 | PASS 734 ]
Error: Test failures
Execution halted
```
# ggfx
* Version: 1.0.1
* GitHub: https://github.com/thomasp85/ggfx
* Source code: https://github.com/cran/ggfx
* Date/Publication: 2022-08-22 08:00:06 UTC
* Number of recursive dependencies: 62
Run `revdepcheck::cloud_details(, "ggfx")` for more info
## Newly broken
* checking S3 generic/method consistency ... WARNING
```
ggplot_build:
function(plot, ...)
ggplot_build.filtered_ggplot:
function(plot)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
## In both
* checking Rd files ... NOTE
```
checkRd: (-1) render_context.Rd:42: Lost braces; missing escapes or markup?
42 | \item{xmin, ymin, xmax, ymax}{Boundaries of the area in pixels. {0,0} is the
| ^
```
# gggenomes
* Version: 1.0.1
* GitHub: https://github.com/thackl/gggenomes
* Source code: https://github.com/cran/gggenomes
* Date/Publication: 2024-08-30 11:40:02 UTC
* Number of recursive dependencies: 109
Run `revdepcheck::cloud_details(, "gggenomes")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘gggenomes-Ex.R’ failed
The error most likely occurred in:
> ### Name: add_feats
> ### Title: Add different types of tracks
> ### Aliases: add_feats add_links add_subfeats add_sublinks add_clusters
> ### add_tracks
>
> ### ** Examples
>
...
+ add_feats(repeats = emale_tirs) +
+ geom_seq() + geom_feat()
Warning: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
ℹ Please use the `linewidth` argument instead.
ℹ The deprecated feature was likely used in the gggenomes package.
Please report the issue at .
Error in UseMethod("add_feats") :
no applicable method for 'add_feats' applied to an object of class "NULL"
Calls: %>% -> add_feats
Execution halted
```
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘emales.Rmd’ using rmarkdown
--- finished re-building ‘emales.Rmd’
--- re-building ‘flip.Rmd’ using rmarkdown
Quitting from flip.Rmd:16-44 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in `UseMethod()`:
...
Error: processing vignette 'gggenomes.Rmd' failed with diagnostics:
no applicable method for 'track_info' applied to an object of class "NULL"
--- failed re-building ‘gggenomes.Rmd’
SUMMARY: processing the following files failed:
‘flip.Rmd’ ‘gggenomes.Rmd’
Error: Vignette re-building failed.
Execution halted
```
# ggghost
* Version: 0.2.2
* GitHub: https://github.com/jonocarroll/ggghost
* Source code: https://github.com/cran/ggghost
* Date/Publication: 2025-04-15 05:50:07 UTC
* Number of recursive dependencies: 46
Run `revdepcheck::cloud_details(, "ggghost")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘ggghost-Ex.R’ failed
The error most likely occurred in:
> ### Name: -.gg
> ### Title: Remove a call from a ggghost object
> ### Aliases: -.gg
>
> ### ** Examples
>
> ## create a ggghost object
...
> ## remove the geom_smooth
> z - geom_smooth()
>
> ## remove the labels
> ## NOTE: argument must be present and able to be
> ## evaluated in scope
> z - labs(TRUE) # works
Error: object is invalid:
- every label must be named.
Execution halted
```
# gghalves
* Version: 0.1.4
* GitHub: https://github.com/erocoar/gghalves
* Source code: https://github.com/cran/gghalves
* Date/Publication: 2022-11-20 11:40:02 UTC
* Number of recursive dependencies: 49
Run `revdepcheck::cloud_details(, "gghalves")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘gghalves-Ex.R’ failed
The error most likely occurred in:
> ### Name: geom_half_point
> ### Title: Points with jitter for half geoms.
> ### Aliases: geom_half_point
>
> ### ** Examples
>
> ggplot(iris, aes(x = Species, y = Petal.Width, fill = Species)) +
...
32. │ └─base::lapply(...)
33. │ └─ggplot2 (local) FUN(X[[i]], ...)
34. │ └─ggplot2 (local) apply_fun(cur_data)
35. │ └─ggplot2 (local) fun(x, ...)
36. └─base::.handleSimpleError(...)
37. └─rlang (local) h(simpleError(msg, call))
38. └─handlers[[1L]](cnd)
39. └─cli::cli_abort(...)
40. └─rlang::abort(...)
Execution halted
```
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
...
--- re-building ‘gghalves.Rmd’ using rmarkdown
Quitting from gghalves.Rmd:39-42 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'gghalves.Rmd' failed with diagnostics:
...
ℹ Error occurred in the 1st layer.
Caused by error in `fun()`:
! argument "layout" is missing, with no default
--- failed re-building ‘gghalves.Rmd’
SUMMARY: processing the following file failed:
‘gghalves.Rmd’
Error: Vignette re-building failed.
Execution halted
```
## In both
* checking dependencies in R code ... NOTE
```
Namespaces in Imports field not imported from:
‘grDevices’ ‘gtable’
All declared Imports should be used.
```
# ggimage
* Version: 0.3.3
* GitHub: https://github.com/GuangchuangYu/ggimage
* Source code: https://github.com/cran/ggimage
* Date/Publication: 2023-06-19 04:10:02 UTC
* Number of recursive dependencies: 56
Run `revdepcheck::cloud_details(, "ggimage")` for more info
## Newly broken
* checking S3 generic/method consistency ... WARNING
```
ggplot_add:
function(object, plot, ...)
ggplot_add.bgimage:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
# ggiraph
* Version: 0.8.13
* GitHub: https://github.com/davidgohel/ggiraph
* Source code: https://github.com/cran/ggiraph
* Date/Publication: 2025-03-28 10:20:02 UTC
* Number of recursive dependencies: 86
Run `revdepcheck::cloud_details(, "ggiraph")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘ggiraph-Ex.R’ failed
The error most likely occurred in:
> ### Name: geom_bar_interactive
> ### Title: Create interactive bars
> ### Aliases: geom_bar_interactive geom_col_interactive
>
> ### ** Examples
>
> # add interactive bar -------
...
23. │ └─base::lapply(...)
24. │ └─ggplot2 (local) FUN(X[[i]], ...)
25. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
26. │ └─self$draw_panel(...)
27. └─base::.handleSimpleError(...)
28. └─rlang (local) h(simpleError(msg, call))
29. └─handlers[[1L]](cnd)
30. └─cli::cli_abort(...)
31. └─rlang::abort(...)
Execution halted
```
* checking tests ... ERROR
```
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> if (requireNamespace("tinytest", quietly = TRUE)) {
+ tinytest::test_package("ggiraph")
+ }
test-annotate_interactive.R... 0 tests
test-annotate_interactive.R... 0 tests
test-annotate_interactive.R... 0 tests
...
33. │ └─base::lapply(...)
34. │ └─ggplot2 (local) FUN(X[[i]], ...)
35. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
36. │ └─self$draw_panel(...)
37. └─base::.handleSimpleError(...)
38. └─rlang (local) h(simpleError(msg, call))
39. └─handlers[[1L]](cnd)
40. └─cli::cli_abort(...)
41. └─rlang::abort(...)
Execution halted
```
## In both
* checking installed package size ... NOTE
```
installed size is 8.1Mb
sub-directories of 1Mb or more:
R 1.5Mb
libs 5.2Mb
```
# ggiraphExtra
* Version: 0.3.0
* GitHub: https://github.com/cardiomoon/ggiraphExtra
* Source code: https://github.com/cran/ggiraphExtra
* Date/Publication: 2020-10-06 07:00:02 UTC
* Number of recursive dependencies: 106
Run `revdepcheck::cloud_details(, "ggiraphExtra")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘ggiraphExtra-Ex.R’ failed
The error most likely occurred in:
> ### Name: ggBar
> ### Title: Draw an interactive barplot
> ### Aliases: ggBar
>
> ### ** Examples
>
> require(moonBook)
...
24. │ └─base::lapply(...)
25. │ └─ggplot2 (local) FUN(X[[i]], ...)
26. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
27. │ └─self$draw_panel(...)
28. └─base::.handleSimpleError(...)
29. └─rlang (local) h(simpleError(msg, call))
30. └─handlers[[1L]](cnd)
31. └─cli::cli_abort(...)
32. └─rlang::abort(...)
Execution halted
```
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘ggPredict.Rmd’ using rmarkdown
```
# ggmap
* Version: 4.0.1
* GitHub: https://github.com/dkahle/ggmap
* Source code: https://github.com/cran/ggmap
* Date/Publication: 2025-04-07 19:40:02 UTC
* Number of recursive dependencies: 62
Run `revdepcheck::cloud_details(, "ggmap")` for more info
## Newly broken
* checking whether package ‘ggmap’ can be installed ... WARNING
```
Found the following significant warnings:
Warning: `aes_()` was deprecated in ggplot2 3.0.0.
See ‘/tmp/workdir/ggmap/new/ggmap.Rcheck/00install.out’ for details.
```
## In both
* checking installed package size ... NOTE
```
installed size is 7.4Mb
sub-directories of 1Mb or more:
data 7.0Mb
```
# ggmosaic
* Version: 0.3.3
* GitHub: https://github.com/haleyjeppson/ggmosaic
* Source code: https://github.com/cran/ggmosaic
* Date/Publication: 2021-02-23 19:50:02 UTC
* Number of recursive dependencies: 73
Run `revdepcheck::cloud_details(, "ggmosaic")` for more info
## Newly broken
* checking whether package ‘ggmosaic’ can be installed ... ERROR
```
Installation failed.
See ‘/tmp/workdir/ggmosaic/new/ggmosaic.Rcheck/00install.out’ for details.
```
## Newly fixed
* checking dependencies in R code ... NOTE
```
':::' call which should be '::': ‘scales:::censor’
See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘productplots:::bound’
See the note in ?`:::` about the use of this operator.
```
## Installation
### Devel
```
* installing *source* package ‘ggmosaic’ ...
** package ‘ggmosaic’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in get(x, envir = ns, inherits = FALSE) :
object 'is.waive' not found
Error: unable to load R code in package ‘ggmosaic’
Execution halted
ERROR: lazy loading failed for package ‘ggmosaic’
* removing ‘/tmp/workdir/ggmosaic/new/ggmosaic.Rcheck/ggmosaic’
```
### CRAN
```
* installing *source* package ‘ggmosaic’ ...
** package ‘ggmosaic’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggmosaic)
```
# ggmulti
* Version: 1.0.7
* GitHub: NA
* Source code: https://github.com/cran/ggmulti
* Date/Publication: 2024-04-09 09:40:05 UTC
* Number of recursive dependencies: 123
Run `revdepcheck::cloud_details(, "ggmulti")` for more info
## Newly broken
* checking whether package ‘ggmulti’ can be installed ... ERROR
```
Installation failed.
See ‘/tmp/workdir/ggmulti/new/ggmulti.Rcheck/00install.out’ for details.
```
## Installation
### Devel
```
* installing *source* package ‘ggmulti’ ...
** package ‘ggmulti’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Error in get(x, envir = ns, inherits = FALSE) :
object 'new_aes' not found
Error: unable to load R code in package ‘ggmulti’
Execution halted
ERROR: lazy loading failed for package ‘ggmulti’
* removing ‘/tmp/workdir/ggmulti/new/ggmulti.Rcheck/ggmulti’
```
### CRAN
```
* installing *source* package ‘ggmulti’ ...
** package ‘ggmulti’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ggmulti)
```
# ggpackets
* Version: 0.2.1
* GitHub: https://github.com/dgkf/ggpackets
* Source code: https://github.com/cran/ggpackets
* Date/Publication: 2022-10-10 23:30:02 UTC
* Number of recursive dependencies: 72
Run `revdepcheck::cloud_details(, "ggpackets")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘ggpackets-Ex.R’ failed
The error most likely occurred in:
> ### Name: ggpacket
> ### Title: A container for lazy ggplot layers
> ### Aliases: ggpacket
>
> ### ** Examples
>
> library(ggplot2)
...
+ geom_line(...) %+%
+ geom_point(color = "red", ...)
+ }
>
> ggplot(mtcars, aes(x = wt, y = mpg)) +
+ ggpk_func(color = "purple", size = 2, point.size = 4)
Error in if (grepl("^Ignoring unknown (parameters|aesthetics):", w$message)) invokeRestart("muffleWarning") :
the condition has length > 1
Calls: Ops.S7_object ... withOneRestart -> doWithOneRestart -> signalCondition ->
Execution halted
```
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘composing-functions.Rmd’ using rmarkdown
```
* checking S3 generic/method consistency ... WARNING
```
ggplot_add:
function(object, plot, ...)
ggplot_add.ggpacket:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
```
# ggparallel
* Version: 0.4.0
* GitHub: https://github.com/heike/ggparallel
* Source code: https://github.com/cran/ggparallel
* Date/Publication: 2024-03-09 22:00:02 UTC
* Number of recursive dependencies: 47
Run `revdepcheck::cloud_details(, "ggparallel")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
...
▆
1. ├─ggplot2::ggplot_build(test_mtcars_plot) at test-ggparallel.R:12:3
2. ├─ggplot2:::ggplot_build.default(test_mtcars_plot)
3. │ └─ggplot2::build_ggplot(plot)
4. │ └─S7::S7_dispatch()
5. └─S7:::method_lookup_error("build_ggplot", ``)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
```
# ggpath
* Version: 1.0.2
* GitHub: https://github.com/mrcaseb/ggpath
* Source code: https://github.com/cran/ggpath
* Date/Publication: 2024-08-20 09:30:02 UTC
* Number of recursive dependencies: 64
Run `revdepcheck::cloud_details(, "ggpath")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggpath)
>
> test_check("ggpath")
[ FAIL 1 | WARN 0 | SKIP 5 | PASS 3 ]
══ Skipped tests (5) ═══════════════════════════════════════════════════════════
...
• geom_lines/p1.svg
• geom_lines/p2.svg
• geom_lines/p3.svg
• geom_lines/p4.svg
• geom_lines/p5.svg
• theme-elements/p1.svg
• theme-elements/p2.svg
• theme-elements/p3.svg
Error: Test failures
Execution halted
```
# ggplot2.utils
* Version: 0.3.2
* GitHub: https://github.com/insightsengineering/ggplot2.utils
* Source code: https://github.com/cran/ggplot2.utils
* Date/Publication: 2024-06-25 21:10:02 UTC
* Number of recursive dependencies: 70
Run `revdepcheck::cloud_details(, "ggplot2.utils")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggplot2.utils)
Loading required package: ggplot2
>
> test_check("ggplot2.utils")
Attaching package: 'dplyr'
...
── Failure ('test-geom_km_ticks.R:10:3'): geom_km_ticks works as expected ──────
Names of `first_layer` ('time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'x', 'y', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill') don't match 'x', 'y', 'time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill'
── Failure ('test-stat_km.R:10:3'): stat_km works as expected ──────────────────
Names of `first_layer` ('time', 'survival', 'PANEL', 'group', 'x', 'y', 'colour', 'fill', 'linewidth', 'linetype', 'weight', 'alpha') don't match 'x', 'y', 'time', 'survival', 'PANEL', 'group', 'colour', 'fill', 'linewidth', 'linetype', 'weight', 'alpha'
── Failure ('test-stat_km_ticks.R:10:3'): stat_km_ticks works as expected ──────
Names of `first_layer` ('time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'x', 'y', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill') don't match 'x', 'y', 'time', 'survival', 'n.risk', 'n.censor', 'n.event', 'PANEL', 'group', 'shape', 'colour', 'size', 'alpha', 'stroke', 'fill'
[ FAIL 4 | WARN 0 | SKIP 7 | PASS 44 ]
Error: Test failures
Execution halted
```
# ggPMX
* Version: 1.2.11
* GitHub: https://github.com/ggPMXdevelopment/ggPMX
* Source code: https://github.com/cran/ggPMX
* Date/Publication: 2023-11-30 16:10:06 UTC
* Number of recursive dependencies: 173
Run `revdepcheck::cloud_details(, "ggPMX")` for more info
## Newly broken
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘ggPMX-guide.Rmd’ using rmarkdown
Quitting from ggPMX-guide.Rmd:24-37 [load_package]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error in `+.gg`:
! 'ggmatrix' does not know how to add objects that do not have class 'theme', 'labels' or 'ggproto'. Received object with class: 'character'
---
Backtrace:
...
Error: processing vignette 'ggPMX-guide.Rmd' failed with diagnostics:
'ggmatrix' does not know how to add objects that do not have class 'theme', 'labels' or 'ggproto'. Received object with class: 'character'
--- failed re-building ‘ggPMX-guide.Rmd’
SUMMARY: processing the following file failed:
‘ggPMX-guide.Rmd’
Error: Vignette re-building failed.
Execution halted
```
## In both
* checking package dependencies ... NOTE
```
Package suggested but not available for checking: ‘lixoftConnectors’
```
* checking installed package size ... NOTE
```
installed size is 9.0Mb
sub-directories of 1Mb or more:
doc 1.1Mb
help 2.4Mb
testdata 4.8Mb
```
# ggpol
* Version: 0.0.7
* GitHub: https://github.com/erocoar/ggpol
* Source code: https://github.com/cran/ggpol
* Date/Publication: 2020-11-08 13:40:02 UTC
* Number of recursive dependencies: 51
Run `revdepcheck::cloud_details(, "ggpol")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘ggpol-Ex.R’ failed
The error most likely occurred in:
> ### Name: GeomConfmat
> ### Title: Confusion Matrix
> ### Aliases: GeomConfmat geom_confmat stat_confmat
>
> ### ** Examples
>
> x <- sample(LETTERS[seq(4)], 50, replace = TRUE)
...
24. │ └─ggpol (local) draw_panel(...)
25. │ └─base::lapply(GeomText$default_aes[missing_aes], rlang::eval_tidy)
26. │ └─rlang (local) FUN(X[[i]], ...)
27. ├─ggplot2::from_theme(fontsize)
28. └─base::.handleSimpleError(...)
29. └─rlang (local) h(simpleError(msg, call))
30. └─handlers[[1L]](cnd)
31. └─cli::cli_abort(...)
32. └─rlang::abort(...)
Execution halted
```
## In both
* checking dependencies in R code ... NOTE
```
Namespaces in Imports field not imported from:
‘dplyr’ ‘grDevices’
All declared Imports should be used.
```
* checking LazyData ... NOTE
```
'LazyData' is specified without a 'data' directory
```
# ggprism
* Version: 1.0.6
* GitHub: https://github.com/csdaw/ggprism
* Source code: https://github.com/cran/ggprism
* Date/Publication: 2025-05-17 10:50:02 UTC
* Number of recursive dependencies: 98
Run `revdepcheck::cloud_details(, "ggprism")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘ggprism-Ex.R’ failed
The error most likely occurred in:
> ### Name: annotation_ticks
> ### Title: Add ticks as ggplot annotation
> ### Aliases: annotation_ticks
>
> ### ** Examples
>
> ## Generally it is better to use the guide_prism_minor function.
...
Please report the issue at .
Error in `parent %+replace% t`:
! `%+replace%` requires two theme objects
Backtrace:
▆
1. └─ggprism::theme_prism(border = TRUE)
2. └─parent %+replace% t
3. └─cli::cli_abort("{.code %+replace%} requires two theme objects")
4. └─rlang::abort(...)
Execution halted
```
* checking tests ... ERROR
```
Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
>
> if ( requireNamespace("tinytest", quietly=TRUE) ){
+ tinytest::test_package("ggprism")
+ }
test-add_pvalue.R............. 0 tests
test-add_pvalue.R............. 0 tests
...
ℹ It has been replaced by a ggproto system that can be extended.
3: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0.
ℹ Please use the `linewidth` argument instead.
ℹ The deprecated feature was likely used in the ggprism package.
Please report the issue at .
4: The `size` argument of `element_rect()` is deprecated as of ggplot2 3.4.0.
ℹ Please use the `linewidth` argument instead.
ℹ The deprecated feature was likely used in the ggprism package.
Please report the issue at .
Execution halted
```
* checking re-building of vignette outputs ... ERROR
```
Error(s) in re-building vignettes:
--- re-building ‘axes.Rmd’ using rmarkdown
Quitting from axes.Rmd:37-48 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'axes.Rmd' failed with diagnostics:
`%+replace%` requires two theme objects
...
Error: processing vignette 'themes.Rmd' failed with diagnostics:
`%+replace%` requires two theme objects
--- failed re-building ‘themes.Rmd’
SUMMARY: processing the following files failed:
‘axes.Rmd’ ‘colours.Rmd’ ‘ggprism.Rmd’ ‘pvalues.Rmd’ ‘themes.Rmd’
Error: Vignette re-building failed.
Execution halted
```
# ggpubr
* Version: 0.6.0
* GitHub: https://github.com/kassambara/ggpubr
* Source code: https://github.com/cran/ggpubr
* Date/Publication: 2023-02-10 16:20:02 UTC
* Number of recursive dependencies: 88
Run `revdepcheck::cloud_details(, "ggpubr")` for more info
## Newly broken
* checking tests ... ERROR
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggpubr)
Loading required package: ggplot2
>
> test_check("ggpubr")
[ FAIL 2 | WARN 6 | SKIP 0 | PASS 183 ]
...
[6] 6 - 10 == -4
[7] 19 - 9 == 10
[9] 1 - 7 == -6
[10] 6 - 7 == -1
[11] 13 - 6 == 7
...
[ FAIL 2 | WARN 6 | SKIP 0 | PASS 183 ]
Error: Test failures
Execution halted
```
# ggraph
* Version: 2.2.1
* GitHub: https://github.com/thomasp85/ggraph
* Source code: https://github.com/cran/ggraph
* Date/Publication: 2024-03-07 12:40:02 UTC
* Number of recursive dependencies: 112
Run `revdepcheck::cloud_details(, "ggraph")` for more info
## Newly broken
* checking examples ... ERROR
```
Running examples in ‘ggraph-Ex.R’ failed
The error most likely occurred in:
> ### Name: geom_conn_bundle
> ### Title: Create hierarchical edge bundles between node connections
> ### Aliases: geom_conn_bundle geom_conn_bundle2 geom_conn_bundle0
>
> ### ** Examples
>
> # Create a graph of the flare class system
...
+ ) +
+ geom_node_point(aes(filter = leaf, colour = class)) +
+ scale_edge_colour_distiller('', direction = 1, guide = 'edge_direction') +
+ coord_fixed() +
+ ggforce::theme_no_axes()
Error in get_layer_key(...) :
unused argument (list(