##fileformat=VCFv4.1
##fileDate=20151102
##reference=file:///data/seq/fakeGenomeV0.fa
##contig=<ID=chr1,length=1000000>
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	ind1	ind2	ind3
chr1	3	snp1	A	C	90	PASS	DP=100;AF=0.5	GT:GQ:DP	0/0:99:34	0/1:99:33	1/1:99:33
chr1	7	snp2	A	C	90	PASS	DP=100;AF=0.5	GT:GQ:DP	0/1:99:34	./.:0:0	./.:0:0
chr1	10	indel1	TTG	T	90	PASS	DP=100;AF=0.5	GT:GQ:DP	0/0:99:34	0/1:50:33	1/1:75:33