sbuild (Debian sbuild) 0.78.1 (09 February 2019) on 8e0e35ca7d18

+==============================================================================+
| bwa 0.7.17-4 (armhf)                         Sat, 21 Dec 2019 09:42:04 +0000 |
+==============================================================================+

Package: bwa
Version: 0.7.17-4
Source Version: 0.7.17-4
Distribution: unstable-amd64-sbuild
Machine Architecture: amd64
Host Architecture: armhf
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-825c6256-c61a-45f5-8e8f-0daa10899125' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/bwa-7HNQiE/resolver-5dwwXh' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Hit:1 http://deb.debian.org/debian unstable InRelease
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages were automatically installed and are no longer required:
  dbus krb5-locales libapparmor1 libatk1.0-0 libavahi-client3
  libavahi-common-data libavahi-common3 libcups2 libdbus-1-3 libgail-common
  libgail18 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-bin libgts-0.7-5 libgts-bin
  libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libxcomposite1
  libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2
Use 'apt autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Local sources
-------------

/home/build/sbuild-setup/repo/pool/main/b/bwa/bwa_0.7.17-4.dsc exists in /home/build/sbuild-setup/repo/pool/main/b/bwa; copying to chroot
I: NOTICE: Log filtering will replace 'build/bwa-7HNQiE/bwa-0.7.17' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bwa-7HNQiE' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 11~), zlib1g-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf
Filtered Build-Depends: debhelper (>= 11~), zlib1g-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [404 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [493 B]
Fetched 1854 B in 0s (117 kB/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  dbus krb5-locales libapparmor1 libatk1.0-0 libavahi-client3
  libavahi-common-data libavahi-common3 libcups2 libdbus-1-3 libgail-common
  libgail18 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-bin libgts-0.7-5 libgts-bin
  libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libxcomposite1
  libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-main-dummy:armhf
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 912 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [912 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 912 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-main-dummy:armhf.
(Reading database ... 31208 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-main-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-main-dummy:armhf (0.invalid.0) ...
Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Initial Foreign Architectures: armhf 
Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 3.16.0-4-amd64 #1 SMP Debian 3.16.51-3 (2017-12-13) amd64 (x86_64)
Toolchain package versions: binutils_2.33.1-6 dpkg-dev_1.19.7 g++-9_9.2.1-21 gcc-9_9.2.1-21 libc6-dev_2.29-6 libstdc++-9-dev_9.2.1-21 libstdc++-9-dev-armhf-cross_9.2.1-21cross1 libstdc++6_9.2.1-21 libstdc++6-armhf-cross_9.2.1-21cross1 linux-libc-dev_5.3.15-1
Package versions: adduser_3.118 adwaita-icon-theme_3.34.0-2 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-5 binutils_2.33.1-6 binutils-arm-linux-gnueabihf_2.33.1-6 binutils-common_2.33.1-6 binutils-x86-64-linux-gnu_2.33.1-6 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 ccache_3.7.6-1 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-9_9.2.1-21 cpp-9-arm-linux-gnueabihf_9.2.1-21cross1 cpp-arm-linux-gnueabihf_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-armhf_12.8 dash_0.5.10.2-6 dbus_1.12.16-2 debconf_1.5.73 debhelper_12.7.2 debian-archive-keyring_2019.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 dirmngr_2.2.17-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.4-1 eatmydata_105-7 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 fontconfig_2.13.1-2+b1 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:9.2.1-3.1 g++-9_9.2.1-21 g++-9-arm-linux-gnueabihf_9.2.1-21cross1 g++-arm-linux-gnueabihf_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-9_9.2.1-21 gcc-9-arm-linux-gnueabihf_9.2.1-21cross1 gcc-9-arm-linux-gnueabihf-base_9.2.1-21cross1 gcc-9-base_9.2.1-21 gcc-9-cross-base_9.2.1-21cross1 gcc-arm-linux-gnueabihf_4:9.2.1-3.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gir1.2-atk-1.0_2.34.1-1 gir1.2-freedesktop_1.62.0-2 gir1.2-gdkpixbuf-2.0_2.40.0+dfsg-1 gir1.2-glib-2.0_1.62.0-2 gir1.2-gtk-2.0_2.24.32-4 gir1.2-harfbuzz-0.0_2.6.4-1 gir1.2-pango-1.0_1.42.4-7 gnupg_2.2.17-3 gnupg-l10n_2.2.17-3 gnupg-utils_2.2.17-3 gpg_2.2.17-3 gpg-agent_2.2.17-3 gpg-wks-client_2.2.17-3 gpg-wks-server_2.2.17-3 gpgconf_2.2.17-3 gpgsm_2.2.17-3 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gtk-update-icon-cache_3.24.13-1 gzip_1.9-3+b1 hicolor-icon-theme_0.17-2 hostname_3.23 icu-devtools_63.2-2 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 krb5-locales_1.17-6 libacl1_2.2.53-5 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+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: bwa
Binary: bwa, libbwa-dev
Architecture: any
Version: 0.7.17-4
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy@debian.org>, Andreas Tille <tille@debian.org>, Carlos Borroto <carlos.borroto@gmail.com>, Ognyan Kulev <ogi@debian.org>, Michael R. Crusoe <michael.crusoe@gmail.com>
Homepage: http://bio-bwa.sourceforge.net/
Standards-Version: 4.4.1
Vcs-Browser: https://salsa.debian.org/med-team/bwa
Vcs-Git: https://salsa.debian.org/med-team/bwa.git
Testsuite: autopkgtest
Build-Depends: debhelper (>= 11~), zlib1g-dev
Package-List:
 bwa deb science optional arch=any
 libbwa-dev deb libdevel optional arch=any
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=ORFs
-----END PGP SIGNATURE-----

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sat Dec 14 13:42:35 2019 UTC
gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./bwa_0.7.17-4.dsc
dpkg-source: info: extracting bwa in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking bwa_0.7.17.orig.tar.gz
dpkg-source: info: unpacking bwa_0.7.17-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_heap_block_overrun
dpkg-source: info: applying fix_build_on_freebsd.patch
dpkg-source: info: applying CVE-2019-10269.patch
dpkg-source: info: applying simde
dpkg-source: info: applying spelling

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CCACHE_COMPRESS=1
CCACHE_DIR=/var/cache/ccache-sbuild
CCACHE_UMASK=002
CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LD_LIBRARY_PATH=/usr/lib/libeatmydata
LD_PRELOAD=libeatmydata.so
LOGNAME=build
PATH=/usr/lib/ccache:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=unstable-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=build
SCHROOT_SESSION_ID=unstable-amd64-sbuild-825c6256-c61a-45f5-8e8f-0daa10899125
SCHROOT_UID=1000
SCHROOT_USER=build
SHELL=/bin/sh
USER=build

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot -j16
dpkg-buildpackage: info: source package bwa
dpkg-buildpackage: info: source version 0.7.17-4
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Michael R. Crusoe <michael.crusoe@gmail.com>
dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean
   dh_auto_clean
	make -j16 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f gmon.out *.o a.out bwa *~ *.a
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules build-arch
dh build-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -- CFLAGS="-Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now" DFLAGS="-DHAVE_PTHREAD"
	make -j16 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc "CFLAGS=-Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now" DFLAGS=-DHAVE_PTHREAD
make[2]: Entering directory '/<<PKGBUILDDIR>>'
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  utils.c -o utils.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  kthread.c -o kthread.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  kstring.c -o kstring.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  ksw.c -o ksw.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  bwt.c -o bwt.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  bntseq.c -o bntseq.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  bwa.c -o bwa.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  bwamem.c -o bwamem.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  bwamem_pair.c -o bwamem_pair.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  bwamem_extra.c -o bwamem_extra.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  malloc_wrap.c -o malloc_wrap.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  QSufSort.c -o QSufSort.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  bwt_gen.c -o bwt_gen.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  rope.c -o rope.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  rle.c -o rle.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  is.c -o is.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  bwtindex.c -o bwtindex.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  bwashm.c -o bwashm.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  bwase.c -o bwase.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  bwaseqio.c -o bwaseqio.o
bwashm.c: In function ‘bwa_shm_stage’:
bwashm.c:29:2: warning: ignoring return value of ‘ftruncate’, declared with attribute warn_unused_result [-Wunused-result]
   29 |  ftruncate(shmid, BWA_CTL_SIZE);
      |  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bwashm.c:66:2: warning: ignoring return value of ‘ftruncate’, declared with attribute warn_unused_result [-Wunused-result]
   66 |  ftruncate(shmid, idx->l_mem);
      |  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  bwtgap.c -o bwtgap.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  bwtaln.c -o bwtaln.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  bamlite.c -o bamlite.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  bwape.c -o bwape.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  kopen.c -o kopen.o
rope.c: In function ‘rope_restore_node’:
rope.c:282:2: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
  282 |  fread(&is_bottom, 1, 1, fp);
      |  ^~~~~~~~~~~~~~~~~~~~~~~~~~~
rope.c:283:2: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
  283 |  fread(&n, 2, 1, fp);
      |  ^~~~~~~~~~~~~~~~~~~
rope.c:291:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
  291 |    fread(p[i].c, 8, 6, fp);
      |    ^~~~~~~~~~~~~~~~~~~~~~~
rope.c:292:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
  292 |    fread(q, 2, 1, fp);
      |    ^~~~~~~~~~~~~~~~~~
rope.c:293:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
  293 |    fread(q + 1, 1, *q, fp);
      |    ^~~~~~~~~~~~~~~~~~~~~~~
rope.c: In function ‘rope_restore’:
rope.c:312:2: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
  312 |  fread(&r->max_nodes, 4, 1, fp);
      |  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rope.c:313:2: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
  313 |  fread(&r->block_len, 4, 1, fp);
      |  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  pemerge.c -o pemerge.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  maxk.c -o maxk.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  bwtsw2_core.c -o bwtsw2_core.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  bwtsw2_main.c -o bwtsw2_main.o
bwamem_pair.c: In function ‘mem_pestat’:
bwamem_pair.c:65:99: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
   65 |  if (bwa_verbose >= 3) fprintf(stderr, "[M::%s] # candidate unique pairs for (FF, FR, RF, RR): (%ld, %ld, %ld, %ld)\n", __func__, isize[0].n, isize[1].n, isize[2].n, isize[3].n);
      |                                                                                                 ~~^                               ~~~~~~~~~~
      |                                                                                                   |                                       |
      |                                                                                                   long int                                size_t {aka unsigned int}
      |                                                                                                 %d
bwamem_pair.c:65:104: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
   65 |  if (bwa_verbose >= 3) fprintf(stderr, "[M::%s] # candidate unique pairs for (FF, FR, RF, RR): (%ld, %ld, %ld, %ld)\n", __func__, isize[0].n, isize[1].n, isize[2].n, isize[3].n);
      |                                                                                                      ~~^                                      ~~~~~~~~~~
      |                                                                                                        |                                              |
      |                                                                                                        long int                                       size_t {aka unsigned int}
      |                                                                                                      %d
bwamem_pair.c:65:109: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
   65 |  if (bwa_verbose >= 3) fprintf(stderr, "[M::%s] # candidate unique pairs for (FF, FR, RF, RR): (%ld, %ld, %ld, %ld)\n", __func__, isize[0].n, isize[1].n, isize[2].n, isize[3].n);
      |                                                                                                           ~~^                                             ~~~~~~~~~~
      |                                                                                                             |                                                     |
      |                                                                                                             long int                                              size_t {aka unsigned int}
      |                                                                                                           %d
bwamem_pair.c:65:114: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
   65 |  if (bwa_verbose >= 3) fprintf(stderr, "[M::%s] # candidate unique pairs for (FF, FR, RF, RR): (%ld, %ld, %ld, %ld)\n", __func__, isize[0].n, isize[1].n, isize[2].n, isize[3].n);
      |                                                                                                                ~~^                                                    ~~~~~~~~~~
      |                                                                                                                  |                                                            |
      |                                                                                                                  long int                                                     size_t {aka unsigned int}
      |                                                                                                                %d
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  bwtsw2_aux.c -o bwtsw2_aux.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  bwt_lite.c -o bwt_lite.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  bwtsw2_chain.c -o bwtsw2_chain.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  fastmap.c -o fastmap.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  bwtsw2_pair.c -o bwtsw2_pair.o
arm-linux-gnueabihf-gcc -c -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD  main.c -o main.o
fastmap.c: In function ‘main_fastmap’:
fastmap.c:413:25: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
  413 |   err_printf("SQ\t%s\t%ld", seq->name.s, seq->seq.l);
      |                       ~~^                ~~~~~~~~~~
      |                         |                        |
      |                         long int                 size_t {aka unsigned int}
      |                       %d
bwt_gen.c: In function ‘BWTIncBuildRelativeRank’:
bwt_gen.c:879:10: warning: variable ‘oldInverseSa0RelativeRank’ set but not used [-Wunused-but-set-variable]
  879 |  bgint_t oldInverseSa0RelativeRank = 0;
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~
bwt_gen.c: In function ‘BWTIncMergeBwt’:
bwt_gen.c:953:15: warning: variable ‘bitsInWordMinusBitPerChar’ set but not used [-Wunused-but-set-variable]
  953 |  unsigned int bitsInWordMinusBitPerChar;
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~
bwamem.c: In function ‘mem_align1_core’:
bwamem.c:1075:19: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
 1075 |   err_printf("* %ld chains remain after removing duplicated chains\n", regs.n);
      |                 ~~^                                                    ~~~~~~
      |                   |                                                        |
      |                   long int                                                 size_t {aka unsigned int}
      |                 %d
ar -csru libbwa.a utils.o kthread.o kstring.o ksw.o bwt.o bntseq.o bwa.o bwamem.o bwamem_pair.o bwamem_extra.o malloc_wrap.o QSufSort.o bwt_gen.o rope.o rle.o is.o bwtindex.o
ar: `u' modifier ignored since `D' is the default (see `U')
arm-linux-gnueabihf-gcc -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_PTHREAD bwashm.o bwase.o bwaseqio.o bwtgap.o bwtaln.o bamlite.o bwape.o kopen.o pemerge.o maxk.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o fastmap.o bwtsw2_pair.o main.o -o bwa -L. -lbwa -lm -lz -lpthread -lrt
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test -a
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary-arch
dh binary-arch
   dh_testroot -a
   dh_prep -a
   dh_auto_install -a
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
    sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a
   debian/rules override_dh_installchangelogs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installchangelogs NEWS.md
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installexamples -a
   dh_installman -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb -a
   dh_gencontrol -a
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'bwa' in '../bwa_0.7.17-4_armhf.deb'.
dpkg-deb: building package 'libbwa-dev' in '../libbwa-dev_0.7.17-4_armhf.deb'.
dpkg-deb: building package 'bwa-dbgsym' in '../bwa-dbgsym_0.7.17-4_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any >../bwa_0.7.17-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-12-21T09:42:21Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


bwa_0.7.17-4_armhf.changes:
---------------------------

Format: 1.8
Date: Sat, 14 Dec 2019 11:38:00 +0100
Source: bwa
Binary: bwa bwa-dbgsym libbwa-dev
Built-For-Profiles: cross nocheck
Architecture: armhf
Version: 0.7.17-4
Distribution: unstable-amd64-sbuild
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <michael.crusoe@gmail.com>
Description:
 bwa        - Burrows-Wheeler Aligner
 libbwa-dev - Burrows-Wheeler Aligner source files
Changes:
 bwa (0.7.17-4) unstable; urgency=medium
 .
   * debian/control: update my email address
   * debian/patches/spelling: fix a few typos
   * Enable for all architectures using simde
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Files:
 91ba8e703b56bb6a08dfd597080e7901 491264 debug optional bwa-dbgsym_0.7.17-4_armhf.deb
 90a7efa77a354075bfc65b82c41f19d5 4870 science optional bwa_0.7.17-4_armhf.buildinfo
 5cfdc191fcab0178a04c87430d783734 207796 science optional bwa_0.7.17-4_armhf.deb
 e20e2994032a6119cb58f82a38013b25 143028 libdevel optional libbwa-dev_0.7.17-4_armhf.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: bwa
Binary: bwa libbwa-dev
Architecture: armhf
Version: 0.7.17-4
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Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Sat, 21 Dec 2019 09:42:20 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
 autoconf (= 2.69-11),
 automake (= 1:1.16.1-4),
 autopoint (= 0.19.8.1-10),
 autotools-dev (= 20180224.1),
 base-files (= 11),
 base-passwd (= 3.5.47),
 bash (= 5.0-5),
 binutils (= 2.33.1-6),
 binutils-common (= 2.33.1-6),
 binutils-x86-64-linux-gnu (= 2.33.1-6),
 bsdmainutils (= 11.1.2+b1),
 bsdutils (= 1:2.34-0.1),
 build-essential (= 12.8),
 bzip2 (= 1.0.8-2),
 coreutils (= 8.30-3+b1),
 cpp (= 4:9.2.1-3.1),
 cpp-9 (= 9.2.1-21),
 dash (= 0.5.10.2-6),
 debconf (= 1.5.73),
 debhelper (= 12.7.2),
 debianutils (= 4.9.1),
 dh-autoreconf (= 19),
 dh-strip-nondeterminism (= 1.6.3-1),
 diffutils (= 1:3.7-3),
 dpkg (= 1.19.7),
 dpkg-dev (= 1.19.7),
 dwz (= 0.13-5),
 fdisk (= 2.34-0.1),
 file (= 1:5.37-6),
 findutils (= 4.7.0-1),
 g++ (= 4:9.2.1-3.1),
 g++-9 (= 9.2.1-21),
 gcc (= 4:9.2.1-3.1),
 gcc-9 (= 9.2.1-21),
 gcc-9-base (= 9.2.1-21),
 gettext (= 0.19.8.1-10),
 gettext-base (= 0.19.8.1-10),
 grep (= 3.3-1),
 groff-base (= 1.22.4-3),
 gzip (= 1.9-3+b1),
 hostname (= 3.23),
 init-system-helpers (= 1.57),
 intltool-debian (= 0.35.0+20060710.5),
 libacl1 (= 2.2.53-5),
 libarchive-zip-perl (= 1.67-1),
 libasan5 (= 9.2.1-21),
 libatomic1 (= 9.2.1-21),
 libattr1 (= 1:2.4.48-5),
 libaudit-common (= 1:2.8.5-2),
 libaudit1 (= 1:2.8.5-2+b1),
 libbinutils (= 2.33.1-6),
 libblkid1 (= 2.34-0.1),
 libbsd0 (= 0.10.0-1),
 libbz2-1.0 (= 1.0.8-2),
 libc-bin (= 2.29-6),
 libc-dev-bin (= 2.29-6),
 libc6 (= 2.29-6),
 libc6-dev (= 2.29-6),
 libcap-ng0 (= 0.7.9-2.1+b1),
 libcc1-0 (= 9.2.1-21),
 libcroco3 (= 0.6.13-1),
 libcrypt1 (= 1:4.4.10-7),
 libcrypt1-dev (= 1:4.4.10-7),
 libdb5.3 (= 5.3.28+dfsg1-0.6),
 libdebconfclient0 (= 0.250),
 libdebhelper-perl (= 12.7.2),
 libdpkg-perl (= 1.19.7),
 libelf1 (= 0.176-1.1),
 libfdisk1 (= 2.34-0.1),
 libffi6 (= 3.2.1-9),
 libfile-stripnondeterminism-perl (= 1.6.3-1),
 libgcc-9-dev (= 9.2.1-21),
 libgcc1 (= 1:9.2.1-21),
 libgcrypt20 (= 1.8.5-3),
 libgdbm-compat4 (= 1.18.1-5),
 libgdbm6 (= 1.18.1-5),
 libglib2.0-0 (= 2.62.3-2),
 libgmp10 (= 2:6.1.2+dfsg-4),
 libgomp1 (= 9.2.1-21),
 libgpg-error0 (= 1.36-7),
 libicu63 (= 63.2-2),
 libisl22 (= 0.22-2),
 libitm1 (= 9.2.1-21),
 liblsan0 (= 9.2.1-21),
 liblz4-1 (= 1.9.2-2),
 liblzma5 (= 5.2.4-1+b1),
 libmagic-mgc (= 1:5.37-6),
 libmagic1 (= 1:5.37-6),
 libmount1 (= 2.34-0.1),
 libmpc3 (= 1.1.0-1),
 libmpfr6 (= 4.0.2-1),
 libncursesw6 (= 6.1+20191019-1),
 libpam-modules (= 1.3.1-5),
 libpam-modules-bin (= 1.3.1-5),
 libpam-runtime (= 1.3.1-5),
 libpam0g (= 1.3.1-5),
 libpcre2-8-0 (= 10.34-7),
 libpcre3 (= 2:8.39-12+b1),
 libperl5.30 (= 5.30.0-9),
 libpipeline1 (= 1.5.1-3),
 libquadmath0 (= 9.2.1-21),
 libseccomp2 (= 2.4.2-2),
 libselinux1 (= 3.0-1),
 libsigsegv2 (= 2.12-2),
 libsmartcols1 (= 2.34-0.1),
 libstdc++-9-dev (= 9.2.1-21),
 libstdc++6 (= 9.2.1-21),
 libsub-override-perl (= 0.09-2),
 libsystemd0 (= 244-3),
 libtinfo6 (= 6.1+20191019-1),
 libtool (= 2.4.6-11),
 libtsan0 (= 9.2.1-21),
 libubsan1 (= 9.2.1-21),
 libuchardet0 (= 0.0.6-3),
 libudev1 (= 244-3),
 libunistring2 (= 0.9.10-2),
 libuuid1 (= 2.34-0.1),
 libxml2 (= 2.9.4+dfsg1-8),
 linux-libc-dev (= 5.3.15-1),
 login (= 1:4.8-1),
 lsb-base (= 11.1.0),
 m4 (= 1.4.18-4),
 make (= 4.2.1-1.2),
 man-db (= 2.9.0-2),
 mawk (= 1.3.3-17+b3),
 ncurses-base (= 6.1+20191019-1),
 ncurses-bin (= 6.1+20191019-1),
 patch (= 2.7.6-6),
 perl (= 5.30.0-9),
 perl-base (= 5.30.0-9),
 perl-modules-5.30 (= 5.30.0-9),
 po-debconf (= 1.0.21),
 sed (= 4.7-1),
 sensible-utils (= 0.0.12+nmu1),
 sysvinit-utils (= 2.96-1),
 tar (= 1.30+dfsg-6+b1),
 util-linux (= 2.34-0.1),
 xz-utils (= 5.2.4-1+b1),
 zlib1g (= 1:1.2.11.dfsg-1+b1),
 zlib1g-dev (= 1:1.2.11.dfsg-1+b1)
Environment:
 DEB_BUILD_OPTIONS="nocheck parallel=16"
 DEB_BUILD_PROFILES="cross nocheck"
 LANG="en_US.UTF-8"
 LC_ALL="C.UTF-8"
 LD_LIBRARY_PATH="/usr/lib/libeatmydata"
 MAKEFLAGS=" -j16"
 SOURCE_DATE_EPOCH="1576319880"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


bwa-dbgsym_0.7.17-4_armhf.deb
-----------------------------

 new Debian package, version 2.0.
 size 491264 bytes: control archive=528 bytes.
     356 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: bwa-dbgsym
 Source: bwa
 Version: 0.7.17-4
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 513
 Depends: bwa (= 0.7.17-4)
 Section: debug
 Priority: optional
 Description: debug symbols for bwa
 Build-Ids: 28fccbb3c71d87be47778837abd566dc12bd3c46

drwxr-xr-x root/root         0 2019-12-14 10:38 ./
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/lib/
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/lib/debug/
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/lib/debug/.build-id/28/
-rw-r--r-- root/root    515060 2019-12-14 10:38 ./usr/lib/debug/.build-id/28/fccbb3c71d87be47778837abd566dc12bd3c46.debug
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/share/
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/share/doc/
lrwxrwxrwx root/root         0 2019-12-14 10:38 ./usr/share/doc/bwa-dbgsym -> bwa


bwa_0.7.17-4_armhf.deb
----------------------

 new Debian package, version 2.0.
 size 207796 bytes: control archive=1312 bytes.
     977 bytes,    21 lines      control              
     983 bytes,    15 lines      md5sums              
 Package: bwa
 Version: 0.7.17-4
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 342
 Depends: libc6 (>= 2.29), zlib1g (>= 1:1.1.4), perl:any
 Suggests: samtools
 Section: science
 Priority: optional
 Homepage: http://bio-bwa.sourceforge.net/
 Description: Burrows-Wheeler Aligner
  BWA is a software package for mapping low-divergent sequences against
  a large reference genome, such as the human genome. It consists of
  three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first
  algorithm is designed for Illumina sequence reads up to 100bp, while
  the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM
  and BWA-SW share similar features such as long-read support and split
  alignment, but BWA-MEM, which is the latest, is generally recommended
  for high-quality queries as it is faster and more accurate. BWA-MEM
  also has better performance than BWA-backtrack for 70-100bp Illumina
  reads.

drwxr-xr-x root/root         0 2019-12-14 10:38 ./
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/bin/
-rwxr-xr-x root/root    284636 2019-12-14 10:38 ./usr/bin/bwa
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/share/
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/share/bash-completion/
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/share/bash-completion/completions/
-rw-r--r-- root/root       384 2019-12-14 10:13 ./usr/share/bash-completion/completions/bwa
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/share/bwa/
-rwxr-xr-x root/root       613 2019-12-14 10:38 ./usr/share/bwa/qualfa2fq.pl
-rwxr-xr-x root/root       727 2019-12-14 10:38 ./usr/share/bwa/xa2multi.pl
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/share/doc/bwa/
-rw-r--r-- root/root       225 2019-12-14 10:13 ./usr/share/doc/bwa/NEWS.Debian.gz
-rw-r--r-- root/root      4216 2017-10-23 17:10 ./usr/share/doc/bwa/README-alt.md.gz
-rw-r--r-- root/root      3511 2017-10-23 17:10 ./usr/share/doc/bwa/README.md.gz
-rw-r--r-- root/root      3489 2019-12-14 10:38 ./usr/share/doc/bwa/changelog.Debian.gz
-rw-r--r-- root/root     14186 2019-12-14 10:38 ./usr/share/doc/bwa/changelog.gz
-rw-r--r-- root/root      4497 2019-12-14 10:38 ./usr/share/doc/bwa/copyright
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/share/doc/bwa/examples/
-rw-r--r-- root/root        96 2019-12-14 10:13 ./usr/share/doc/bwa/examples/read1.fq
-rw-r--r-- root/root        96 2019-12-14 10:13 ./usr/share/doc/bwa/examples/read2.fq
-rw-r--r-- root/root       384 2019-12-14 10:13 ./usr/share/doc/bwa/examples/reads.fq
-rw-r--r-- root/root       192 2019-12-14 10:13 ./usr/share/doc/bwa/examples/ref.fa
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/share/man/
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/share/man/man1/
-rw-r--r-- root/root     10609 2019-12-14 10:38 ./usr/share/man/man1/bwa.1.gz


libbwa-dev_0.7.17-4_armhf.deb
-----------------------------

 new Debian package, version 2.0.
 size 143028 bytes: control archive=1252 bytes.
    1024 bytes,    23 lines      control              
     792 bytes,    13 lines      md5sums              
 Package: libbwa-dev
 Source: bwa
 Version: 0.7.17-4
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 304
 Suggests: samtools
 Section: libdevel
 Priority: optional
 Homepage: http://bio-bwa.sourceforge.net/
 Description: Burrows-Wheeler Aligner source files
  BWA is a software package for mapping low-divergent sequences against
  a large reference genome, such as the human genome. It consists of
  three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first
  algorithm is designed for Illumina sequence reads up to 100bp, while
  the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM
  and BWA-SW share similar features such as long-read support and split
  alignment, but BWA-MEM, which is the latest, is generally recommended
  for high-quality queries as it is faster and more accurate. BWA-MEM
  also has better performance than BWA-backtrack for 70-100bp Illumina
  reads.
  .
  This package contains the source files for use in other programs.

drwxr-xr-x root/root         0 2019-12-14 10:38 ./
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/include/
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/include/bwa/
-rw-r--r-- root/root      1646 2017-10-23 17:10 ./usr/include/bwa/QSufSort.h
-rw-r--r-- root/root      2775 2017-10-23 17:10 ./usr/include/bwa/bntseq.h
-rw-r--r-- root/root      2044 2017-10-23 17:10 ./usr/include/bwa/bwa.h
-rw-r--r-- root/root      7996 2019-12-14 10:38 ./usr/include/bwa/bwamem.h
-rw-r--r-- root/root      4966 2017-10-23 17:10 ./usr/include/bwa/bwt.h
-rw-r--r-- root/root      8857 2017-10-23 17:10 ./usr/include/bwa/kseq.h
-rw-r--r-- root/root      9718 2017-10-23 17:10 ./usr/include/bwa/ksort.h
-rw-r--r-- root/root      2940 2017-10-23 17:10 ./usr/include/bwa/kvec.h
-rw-r--r-- root/root      3821 2017-10-23 17:10 ./usr/include/bwa/utils.h
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/lib/
-rw-r--r-- root/root    230578 2019-12-14 10:38 ./usr/lib/libbwa.a
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/share/
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-12-14 10:38 ./usr/share/doc/libbwa-dev/
-rw-r--r-- root/root      3489 2019-12-14 10:38 ./usr/share/doc/libbwa-dev/changelog.Debian.gz
-rw-r--r-- root/root     14186 2019-12-14 10:38 ./usr/share/doc/libbwa-dev/changelog.gz
-rw-r--r-- root/root      4497 2019-12-14 10:38 ./usr/share/doc/libbwa-dev/copyright


lintian
-------


Setup apt archive
-----------------

Merged Build-Depends: lintian:amd64
Filtered Build-Depends: lintian:amd64
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [963 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [535 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [622 B]
Fetched 2120 B in 0s (159 kB/s)
Reading package lists...
Reading package lists...

Install lintian build dependencies (apt-based resolver)
-------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  dbus krb5-locales libapparmor1 libatk1.0-0 libavahi-client3
  libavahi-common-data libavahi-common3 libcups2 libdbus-1-3 libgail-common
  libgail18 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-bin libgts-0.7-5 libgts-bin
  libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libxcomposite1
  libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  diffstat libapt-pkg-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
  libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl
  libclass-accessor-perl libclass-method-modifiers-perl
  libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl
  libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl
  libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl
  libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl
  libimport-into-perl libio-async-loop-epoll-perl libio-async-perl
  libio-pty-perl libio-socket-ssl-perl libipc-run-perl
  libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl
  liblist-moreutils-perl libmailtools-perl libmldbm-perl
  libmodule-implementation-perl libmodule-runtime-perl libmoo-perl
  libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl
  libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl
  libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl
  libparams-classify-perl libpath-tiny-perl librole-tiny-perl
  libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl
  libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl
  libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl
  liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian
  netbase patchutils perl-openssl-defaults t1utils
Suggested packages:
  libxml-parser-perl libdata-dump-perl ca-certificates libscalar-number-perl
  libbareword-filehandles-perl libindirect-perl libmultidimensional-perl
  libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl
  binutils-multiarch libtext-template-perl
Recommended packages:
  libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl
  libsereal-perl libtest-fatal-perl libtest-refcount-perl libfreezethaw-perl
  libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl
  libperl4-corelibs-perl libauthen-sasl-perl libpackage-stash-xs-perl
  libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl
  libperlio-gzip-perl
The following NEW packages will be installed:
  diffstat libapt-pkg-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
  libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl
  libclass-accessor-perl libclass-method-modifiers-perl
  libclass-xsaccessor-perl libclone-perl libdevel-callchecker-perl
  libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl
  libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl
  libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl
  libimport-into-perl libio-async-loop-epoll-perl libio-async-perl
  libio-pty-perl libio-socket-ssl-perl libipc-run-perl
  libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl
  liblist-moreutils-perl libmailtools-perl libmldbm-perl
  libmodule-implementation-perl libmodule-runtime-perl libmoo-perl
  libmoox-aliases-perl libnamespace-clean-perl libnet-dns-perl
  libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl
  libnet-ssleay-perl libnumber-compare-perl libpackage-stash-perl
  libparams-classify-perl libpath-tiny-perl librole-tiny-perl
  libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl
  libsub-identify-perl libsub-name-perl libsub-quote-perl libtext-glob-perl
  libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl
  liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian
  netbase patchutils perl-openssl-defaults
  sbuild-build-depends-lintian-dummy:armhf t1utils
0 upgraded, 70 newly installed, 0 to remove and 0 not upgraded.
Need to get 5264 kB/5410 kB of archives.
After this operation, 17.9 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [844 B]
Get:2 http://deb.debian.org/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b2 [71.3 kB]
Get:3 http://deb.debian.org/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b2 [11.3 kB]
Get:4 http://deb.debian.org/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB]
Get:5 http://deb.debian.org/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b1 [15.9 kB]
Get:6 http://deb.debian.org/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b2 [25.6 kB]
Get:7 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:8 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:9 http://deb.debian.org/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB]
Get:10 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:11 http://deb.debian.org/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b2 [46.0 kB]
Get:12 http://deb.debian.org/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1 [18.6 kB]
Get:13 http://deb.debian.org/debian unstable/main amd64 libberkeleydb-perl amd64 0.62-1+b1 [124 kB]
Get:14 http://deb.debian.org/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB]
Get:15 http://deb.debian.org/debian unstable/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB]
Get:16 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB]
Get:17 http://deb.debian.org/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b4 [105 kB]
Get:18 http://deb.debian.org/debian unstable/main amd64 libcgi-pm-perl all 4.44-1 [223 kB]
Get:19 http://deb.debian.org/debian unstable/main amd64 libsub-name-perl amd64 0.26-1 [13.5 kB]
Get:20 http://deb.debian.org/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB]
Get:21 http://deb.debian.org/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB]
Get:22 http://deb.debian.org/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b3 [38.4 kB]
Get:23 http://deb.debian.org/debian unstable/main amd64 libclone-perl amd64 0.43-2 [15.0 kB]
Get:24 http://deb.debian.org/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB]
Get:25 http://deb.debian.org/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B]
Get:26 http://deb.debian.org/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-2 [321 kB]
Get:27 http://deb.debian.org/debian unstable/main amd64 libio-socket-ssl-perl all 2.066-1 [210 kB]
Get:28 http://deb.debian.org/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B]
Get:29 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB]
Get:30 http://deb.debian.org/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB]
Get:31 http://deb.debian.org/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB]
Get:32 http://deb.debian.org/debian unstable/main amd64 libnet-dns-perl all 1.21-1 [368 kB]
Get:33 http://deb.debian.org/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB]
Get:34 http://deb.debian.org/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB]
Get:35 http://deb.debian.org/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB]
Get:36 http://deb.debian.org/debian unstable/main amd64 libipc-system-simple-perl all 1.25-5 [26.7 kB]
Get:37 http://deb.debian.org/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB]
Get:38 http://deb.debian.org/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B]
Get:39 http://deb.debian.org/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B]
Get:40 http://deb.debian.org/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB]
Get:41 http://deb.debian.org/debian unstable/main amd64 libfont-ttf-perl all 1.06-1 [317 kB]
Get:42 http://deb.debian.org/debian unstable/main amd64 libfuture-perl all 0.42-1 [82.6 kB]
Get:43 http://deb.debian.org/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB]
Get:44 http://deb.debian.org/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB]
Get:45 http://deb.debian.org/debian unstable/main amd64 libio-async-perl all 0.75-1 [269 kB]
Get:46 http://deb.debian.org/debian unstable/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.8 kB]
Get:47 http://deb.debian.org/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB]
Get:48 http://deb.debian.org/debian unstable/main amd64 libio-pty-perl amd64 1:1.12-1 [36.3 kB]
Get:49 http://deb.debian.org/debian unstable/main amd64 libipc-run-perl all 20180523.0-2 [101 kB]
Get:50 http://deb.debian.org/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB]
Get:51 http://deb.debian.org/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b5 [63.6 kB]
Get:52 http://deb.debian.org/debian unstable/main amd64 libmldbm-perl all 2.05-2 [18.4 kB]
Get:53 http://deb.debian.org/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB]
Get:54 http://deb.debian.org/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB]
Get:55 http://deb.debian.org/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB]
Get:56 http://deb.debian.org/debian unstable/main amd64 libmoo-perl all 2.003006-1 [58.7 kB]
Get:57 http://deb.debian.org/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB]
Get:58 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB]
Get:59 http://deb.debian.org/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB]
Get:60 http://deb.debian.org/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:61 http://deb.debian.org/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB]
Get:62 http://deb.debian.org/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB]
Get:63 http://deb.debian.org/debian unstable/main amd64 libtype-tiny-perl all 1.008000-1 [332 kB]
Get:64 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB]
Get:65 http://deb.debian.org/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.80+repack-2+b1 [34.8 kB]
Get:66 http://deb.debian.org/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB]
Get:67 http://deb.debian.org/debian unstable/main amd64 lintian all 2.42.0 [1304 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package libsub-identify-perl.
Preparing to unpack .../59-libsub-identify-perl_0.14-1+b2_amd64.deb ...
Unpacking libsub-identify-perl (0.14-1+b2) ...
Selecting previously unselected package libnamespace-clean-perl.
Preparing to unpack .../60-libnamespace-clean-perl_0.27-1_all.deb ...
Unpacking libnamespace-clean-perl (0.27-1) ...
Selecting previously unselected package libpath-tiny-perl.
Preparing to unpack .../61-libpath-tiny-perl_0.108-1_all.deb ...
Unpacking libpath-tiny-perl (0.108-1) ...
Selecting previously unselected package libtext-levenshtein-perl.
Preparing to unpack .../62-libtext-levenshtein-perl_0.13-1_all.deb ...
Unpacking libtext-levenshtein-perl (0.13-1) ...
Selecting previously unselected package libtype-tiny-perl.
Preparing to unpack .../63-libtype-tiny-perl_1.008000-1_all.deb ...
Unpacking libtype-tiny-perl (1.008000-1) ...
Selecting previously unselected package libyaml-0-2:amd64.
Preparing to unpack .../64-libyaml-0-2_0.2.2-1_amd64.deb ...
Unpacking libyaml-0-2:amd64 (0.2.2-1) ...
Selecting previously unselected package libyaml-libyaml-perl.
Preparing to unpack .../65-libyaml-libyaml-perl_0.80+repack-2+b1_amd64.deb ...
Unpacking libyaml-libyaml-perl (0.80+repack-2+b1) ...
Selecting previously unselected package patchutils.
Preparing to unpack .../66-patchutils_0.3.4-2+b1_amd64.deb ...
Unpacking patchutils (0.3.4-2+b1) ...
Selecting previously unselected package t1utils.
Preparing to unpack .../67-t1utils_1.41-3_amd64.deb ...
Unpacking t1utils (1.41-3) ...
Selecting previously unselected package lintian.
Preparing to unpack .../68-lintian_2.42.0_all.deb ...
Unpacking lintian (2.42.0) ...
Selecting previously unselected package sbuild-build-depends-lintian-dummy:armhf.
Preparing to unpack .../69-sbuild-build-depends-lintian-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ...
Setting up libapt-pkg-perl (0.1.36+b2) ...
Setting up libberkeleydb-perl:amd64 (0.62-1+b1) ...
Setting up libstruct-dumb-perl (0.09-1) ...
Setting up libdynaloader-functions-perl (0.003-1) ...
Setting up libtext-glob-perl (0.10-1) ...
Setting up libclass-method-modifiers-perl (2.13-1) ...
Setting up liblist-compare-perl (0.53-1) ...
Setting up libio-pty-perl (1:1.12-1) ...
Setting up libclone-perl (0.43-2) ...
Setting up libyaml-0-2:amd64 (0.2.2-1) ...
Setting up libsub-identify-perl (0.14-1+b2) ...
Setting up libhtml-tagset-perl (3.20-4) ...
Setting up libfuture-perl (0.42-1) ...
Setting up libyaml-libyaml-perl (0.80+repack-2+b1) ...
Setting up libtry-tiny-perl (0.30-1) ...
Setting up perl-openssl-defaults:amd64 (3) ...
Setting up libmldbm-perl (2.05-2) ...
Setting up libtext-levenshtein-perl (0.13-1) ...
Setting up libnumber-compare-perl (0.03-1) ...
Setting up libio-async-perl (0.75-1) ...
Setting up patchutils (0.3.4-2+b1) ...
Setting up libfile-find-rule-perl (0.34-1) ...
Setting up libdigest-hmac-perl (1.03+dfsg-2) ...
Setting up libipc-system-simple-perl (1.25-5) ...
Setting up libnet-domain-tld-perl (1.75-1) ...
Setting up t1utils (1.41-3) ...
Setting up liblinux-epoll-perl (0.017-1) ...
Setting up diffstat (1.63-1) ...
Setting up libvariable-magic-perl (0.62-1+b2) ...
Setting up libb-hooks-op-check-perl (0.22-1+b2) ...
Setting up libipc-run-perl (20180523.0-2) ...
Setting up libsub-exporter-progressive-perl (0.001013-1) ...
Setting up libcapture-tiny-perl (0.48-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsub-name-perl (0.26-1) ...
Setting up libpath-tiny-perl (0.108-1) ...
Setting up librole-tiny-perl (2.001004-1) ...
Setting up netbase (5.8) ...
Setting up libstrictures-perl (2.000006-1) ...
Setting up libsub-quote-perl (2.006006-1) ...
Setting up libclass-xsaccessor-perl (1.19-3+b3) ...
Setting up libexporter-tiny-perl (1.002001-1) ...
Setting up libclass-accessor-perl (0.51-1) ...
Setting up libfont-ttf-perl (1.06-1) ...
Setting up libnet-ip-perl (1.26-2) ...
Setting up liburi-perl (1.76-1) ...
Setting up libnet-ssleay-perl (1.88-2) ...
Setting up libfile-basedir-perl (0.08-1) ...
Setting up liblist-moreutils-perl (0.416-1+b5) ...
Setting up libtype-tiny-perl (1.008000-1) ...
Setting up libnet-dns-perl (1.21-1) ...
Setting up libdevel-callchecker-perl (0.008-1+b1) ...
Setting up libio-async-loop-epoll-perl (0.20-1) ...
Setting up libhtml-parser-perl (3.72-3+b4) ...
Setting up libio-socket-ssl-perl (2.066-1) ...
Setting up libparams-classify-perl (0.015-1+b2) ...
Setting up libcgi-pm-perl (4.44-1) ...
Setting up libnet-smtp-ssl-perl (1.04-1) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up libmailtools-perl (2.21-1) ...
Setting up libmodule-implementation-perl (0.09-1) ...
Setting up libemail-valid-perl (1.202-1) ...
Setting up libpackage-stash-perl (0.38-1) ...
Setting up libimport-into-perl (1.002005-1) ...
Setting up libmoo-perl (2.003006-1) ...
Setting up libmoox-aliases-perl (0.001006-1) ...
Setting up libb-hooks-endofscope-perl (0.24-1) ...
Setting up libnamespace-clean-perl (0.27-1) ...
Setting up lintian (2.42.0) ...
Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ...
Processing triggers for man-db (2.9.0-2) ...
Not building database; man-db/auto-update is not 'true'.
Processing triggers for libc-bin (2.29-6) ...
W: bwa source: incorrect-packaging-filename debian/NEWS.Debian -> debian/NEWS

I: Lintian run was successful.

+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  dbus krb5-locales libapparmor1 libatk1.0-0 libavahi-client3
  libavahi-common-data libavahi-common3 libcups2 libdbus-1-3 libgail-common
  libgail18 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-bin libgts-0.7-5 libgts-bin
  libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libxcomposite1
  libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2
Use 'apt autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  dbus krb5-locales libapparmor1 libatk1.0-0 libavahi-client3
  libavahi-common-data libavahi-common3 libcups2 libdbus-1-3 libgail-common
  libgail18 libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-bin libgts-0.7-5 libgts-bin
  libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libxcomposite1
  libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2
Use 'apt autoremove' to remove them.
The following packages will be REMOVED:
  diffstat* libapt-pkg-perl* libb-hooks-endofscope-perl*
  libb-hooks-op-check-perl* libberkeleydb-perl* libcapture-tiny-perl*
  libcgi-pm-perl* libclass-accessor-perl* libclass-method-modifiers-perl*
  libclass-xsaccessor-perl* libclone-perl* libdevel-callchecker-perl*
  libdigest-hmac-perl* libdynaloader-functions-perl* libemail-valid-perl*
  libexporter-tiny-perl* libfile-basedir-perl* libfile-find-rule-perl*
  libfont-ttf-perl* libfuture-perl* libhtml-parser-perl* libhtml-tagset-perl*
  libimport-into-perl* libio-async-loop-epoll-perl* libio-async-perl*
  libio-pty-perl* libio-socket-ssl-perl* libipc-run-perl*
  libipc-system-simple-perl* liblinux-epoll-perl* liblist-compare-perl*
  liblist-moreutils-perl* libmailtools-perl* libmldbm-perl*
  libmodule-implementation-perl* libmodule-runtime-perl* libmoo-perl*
  libmoox-aliases-perl* libnamespace-clean-perl* libnet-dns-perl*
  libnet-domain-tld-perl* libnet-ip-perl* libnet-smtp-ssl-perl*
  libnet-ssleay-perl* libnumber-compare-perl* libpackage-stash-perl*
  libparams-classify-perl* libpath-tiny-perl* librole-tiny-perl*
  libstrictures-perl* libstruct-dumb-perl* libsub-exporter-progressive-perl*
  libsub-identify-perl* libsub-name-perl* libsub-quote-perl*
  libtext-glob-perl* libtext-levenshtein-perl* libtimedate-perl*
  libtry-tiny-perl* libtype-tiny-perl* liburi-perl* libvariable-magic-perl*
  libyaml-0-2* libyaml-libyaml-perl* lintian* netbase* patchutils*
  perl-openssl-defaults* sbuild-build-depends-lintian-dummy:armhf*
  sbuild-build-depends-main-dummy:armhf* t1utils*
0 upgraded, 0 newly installed, 71 to remove and 0 not upgraded.
After this operation, 17.9 MB disk space will be freed.
(Reading database ... 35170 files and directories currently installed.)
Removing sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ...
Removing lintian (2.42.0) ...
Removing diffstat (1.63-1) ...
Removing libapt-pkg-perl (0.1.36+b2) ...
Removing libnamespace-clean-perl (0.27-1) ...
Removing libb-hooks-endofscope-perl (0.24-1) ...
Removing libmoox-aliases-perl (0.001006-1) ...
Removing libmoo-perl (2.003006-1) ...
Removing libpackage-stash-perl (0.38-1) ...
Removing libmodule-implementation-perl (0.09-1) ...
Removing libberkeleydb-perl:amd64 (0.62-1+b1) ...
Removing libcapture-tiny-perl (0.48-1) ...
Removing libcgi-pm-perl (4.44-1) ...
Removing libclass-accessor-perl (0.51-1) ...
Removing librole-tiny-perl (2.001004-1) ...
Removing libclass-method-modifiers-perl (2.13-1) ...
Removing libclass-xsaccessor-perl (1.19-3+b3) ...
Removing libclone-perl (0.43-2) ...
Removing libemail-valid-perl (1.202-1) ...
Removing libnet-dns-perl (1.21-1) ...
Removing libdigest-hmac-perl (1.03+dfsg-2) ...
Removing libtype-tiny-perl (1.008000-1) ...
Removing liblist-moreutils-perl (0.416-1+b5) ...
Removing libexporter-tiny-perl (1.002001-1) ...
Removing libfile-basedir-perl (0.08-1) ...
Removing libfile-find-rule-perl (0.34-1) ...
Removing libfont-ttf-perl (1.06-1) ...
Removing libio-async-loop-epoll-perl (0.20-1) ...
Removing libio-async-perl (0.75-1) ...
Removing libfuture-perl (0.42-1) ...
Removing libhtml-parser-perl (3.72-3+b4) ...
Removing libhtml-tagset-perl (3.20-4) ...
Removing libimport-into-perl (1.002005-1) ...
Removing libipc-run-perl (20180523.0-2) ...
Removing libio-pty-perl (1:1.12-1) ...
Removing libmailtools-perl (2.21-1) ...
Removing libnet-smtp-ssl-perl (1.04-1) ...
Removing libio-socket-ssl-perl (2.066-1) ...
Removing libipc-system-simple-perl (1.25-5) ...
Removing liblinux-epoll-perl (0.017-1) ...
Removing liblist-compare-perl (0.53-1) ...
Removing libmldbm-perl (2.05-2) ...
Removing libnet-domain-tld-perl (1.75-1) ...
Removing libnet-ip-perl (1.26-2) ...
Removing libnet-ssleay-perl (1.88-2) ...
Removing libnumber-compare-perl (0.03-1) ...
Removing libpath-tiny-perl (0.108-1) ...
Removing libstrictures-perl (2.000006-1) ...
Removing libstruct-dumb-perl (0.09-1) ...
Removing libsub-exporter-progressive-perl (0.001013-1) ...
Removing libsub-identify-perl (0.14-1+b2) ...
Removing libsub-name-perl (0.26-1) ...
Removing libsub-quote-perl (2.006006-1) ...
Removing libtext-glob-perl (0.10-1) ...
Removing libtext-levenshtein-perl (0.13-1) ...
Removing libtimedate-perl (2.3000-2) ...
Removing libtry-tiny-perl (0.30-1) ...
Removing liburi-perl (1.76-1) ...
Removing libvariable-magic-perl (0.62-1+b2) ...
Removing libyaml-libyaml-perl (0.80+repack-2+b1) ...
Removing libyaml-0-2:amd64 (0.2.2-1) ...
Removing netbase (5.8) ...
Removing patchutils (0.3.4-2+b1) ...
Removing perl-openssl-defaults:amd64 (3) ...
Removing sbuild-build-depends-main-dummy:armhf (0.invalid.0) ...
Removing t1utils (1.41-3) ...
Removing libmodule-runtime-perl (0.016-1) ...
Removing libparams-classify-perl (0.015-1+b2) ...
Removing libdevel-callchecker-perl (0.008-1+b1) ...
Removing libb-hooks-op-check-perl (0.22-1+b2) ...
Removing libdynaloader-functions-perl (0.003-1) ...
Processing triggers for man-db (2.9.0-2) ...
Not building database; man-db/auto-update is not 'true'.
Processing triggers for libc-bin (2.29-6) ...
(Reading database ... 31212 files and directories currently installed.)
Purging configuration files for lintian (2.42.0) ...
Purging configuration files for netbase (5.8) ...

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: 8604
Build-Time: 10
Distribution: unstable-amd64-sbuild
Foreign Architectures: armhf
Host Architecture: armhf
Install-Time: 3
Job: /home/build/sbuild-setup/repo/pool/main/b/bwa/bwa_0.7.17-4.dsc
Lintian: warn
Machine Architecture: amd64
Package: bwa
Package-Time: 17
Source-Version: 0.7.17-4
Space: 8604
Status: successful
Version: 0.7.17-4
--------------------------------------------------------------------------------
Finished at 2019-12-21T09:42:21Z
Build needed 00:00:17, 8604k disk space